Query 046223
Match_columns 408
No_of_seqs 491 out of 2557
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 17:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.4E-33 8E-38 252.6 16.1 163 79-304 12-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.8E-31 6.3E-36 229.8 19.5 157 83-302 1-166 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 9.7E-31 3.3E-35 231.8 18.0 169 77-306 8-186 (196)
4 1b7f_A Protein (SXL-lethal pro 100.0 1.7E-30 5.8E-35 224.4 18.8 155 81-300 2-168 (168)
5 3tyt_A Heterogeneous nuclear r 100.0 2.8E-30 9.5E-35 230.6 20.6 192 80-300 2-204 (205)
6 2adc_A Polypyrimidine tract-bi 100.0 3.9E-30 1.3E-34 234.1 21.4 196 77-303 29-228 (229)
7 3nmr_A Cugbp ELAV-like family 100.0 1.9E-30 6.5E-35 225.5 17.9 160 81-301 2-175 (175)
8 3pgw_A U1-A; protein-RNA compl 100.0 7.6E-30 2.6E-34 239.4 23.3 218 77-301 4-281 (282)
9 1fxl_A Paraneoplastic encephal 100.0 2.7E-30 9.2E-35 222.7 18.2 155 81-300 1-167 (167)
10 1fje_B Nucleolin RBD12, protei 100.0 1.3E-30 4.4E-35 227.0 15.0 163 77-303 8-174 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 9.9E-30 3.4E-34 225.7 20.8 179 80-305 2-196 (198)
12 2qfj_A FBP-interacting repress 100.0 1.4E-30 4.7E-35 234.4 15.1 171 80-304 26-206 (216)
13 2g4b_A Splicing factor U2AF 65 100.0 9.9E-30 3.4E-34 220.5 18.2 154 80-300 2-171 (172)
14 1qm9_A Polypyrimidine tract-bi 100.0 1.5E-29 5.2E-34 224.8 18.3 192 81-303 2-197 (198)
15 2cjk_A Nuclear polyadenylated 100.0 1.3E-30 4.5E-35 225.0 10.9 155 81-303 2-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 1.2E-27 4.3E-32 224.5 20.8 152 80-304 20-176 (284)
17 3smz_A Protein raver-1, ribonu 100.0 1.3E-27 4.3E-32 224.5 20.6 164 81-306 94-267 (284)
18 3sde_A Paraspeckle component 1 100.0 1E-27 3.4E-32 222.5 18.3 155 78-304 18-180 (261)
19 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-27 4.6E-32 225.2 17.7 156 77-305 36-199 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.8E-27 6.2E-32 224.3 17.8 164 81-303 116-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.1E-21 1.1E-25 164.9 14.8 80 226-305 68-152 (158)
22 2i2y_A Fusion protein consists 99.8 1.6E-20 5.5E-25 159.0 10.3 138 117-304 11-149 (150)
23 4f25_A Polyadenylate-binding p 99.8 2.1E-20 7.1E-25 150.9 9.5 73 81-157 4-79 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 4.8E-19 1.6E-23 138.8 10.5 75 228-302 19-98 (99)
25 3r27_A HnRNP L, heterogeneous 99.8 2.3E-18 7.9E-23 133.8 10.0 80 78-160 17-96 (100)
26 2lea_A Serine/arginine-rich sp 99.8 7E-19 2.4E-23 146.0 7.2 80 227-306 46-130 (135)
27 2lxi_A RNA-binding protein 10; 99.7 3.9E-18 1.3E-22 131.5 9.3 78 228-305 1-85 (91)
28 1sjq_A Polypyrimidine tract-bi 99.7 1E-17 3.6E-22 131.4 10.6 81 78-161 12-92 (105)
29 4f25_A Polyadenylate-binding p 99.7 9E-18 3.1E-22 135.4 10.2 79 228-306 5-86 (115)
30 4fxv_A ELAV-like protein 1; RN 99.7 7.8E-18 2.7E-22 131.9 9.5 76 80-159 17-97 (99)
31 3s8s_A Histone-lysine N-methyl 99.7 1.4E-17 4.7E-22 133.0 10.8 78 228-305 6-88 (110)
32 1wex_A Hypothetical protein (r 99.7 3.5E-17 1.2E-21 129.1 12.2 81 77-160 10-90 (104)
33 2fy1_A RNA-binding motif prote 99.7 2.7E-17 9.2E-22 132.8 11.6 81 226-306 5-89 (116)
34 3r27_A HnRNP L, heterogeneous 99.7 1.9E-17 6.6E-22 128.6 10.1 79 225-304 18-98 (100)
35 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.3E-17 2.1E-21 127.7 12.9 82 225-306 12-96 (103)
36 2dgo_A Cytotoxic granule-assoc 99.7 9.6E-17 3.3E-21 129.3 14.0 82 225-306 12-98 (115)
37 2lkz_A RNA-binding protein 5; 99.7 2.1E-17 7.2E-22 128.1 9.7 76 227-302 8-94 (95)
38 1sjq_A Polypyrimidine tract-bi 99.7 1.8E-17 6.3E-22 130.0 9.3 79 227-306 15-95 (105)
39 1x4a_A Splicing factor, argini 99.7 8.5E-17 2.9E-21 128.3 13.4 81 225-305 19-101 (109)
40 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.9E-17 1E-21 125.3 10.2 77 227-303 5-86 (87)
41 1whw_A Hypothetical protein ri 99.7 6E-17 2.1E-21 126.8 12.2 80 226-305 6-90 (99)
42 2wbr_A GW182, gawky, LD47780P; 99.7 2E-17 6.9E-22 123.9 8.8 73 228-301 7-79 (89)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.8E-17 2E-21 127.6 11.9 81 226-306 10-95 (102)
44 3md1_A Nuclear and cytoplasmic 99.7 4.3E-17 1.5E-21 123.2 10.7 76 229-304 2-82 (83)
45 2x1f_A MRNA 3'-END-processing 99.7 5E-17 1.7E-21 126.5 11.1 77 228-304 2-83 (96)
46 2cpz_A CUG triplet repeat RNA- 99.7 7.5E-17 2.6E-21 129.9 12.5 81 225-305 22-107 (115)
47 3s8s_A Histone-lysine N-methyl 99.7 2.9E-17 1E-21 131.1 9.8 75 80-158 4-83 (110)
48 2cq1_A PTB-like protein L; RRM 99.7 6.1E-17 2.1E-21 126.9 11.4 81 77-160 10-90 (101)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.6E-17 1.6E-21 123.7 10.4 75 227-301 6-85 (85)
50 2dnm_A SRP46 splicing factor; 99.7 4E-17 1.4E-21 128.8 10.2 82 225-306 10-96 (103)
51 2ad9_A Polypyrimidine tract-bi 99.7 3.1E-17 1E-21 132.0 9.6 81 78-161 27-107 (119)
52 2do4_A Squamous cell carcinoma 99.7 7.5E-17 2.6E-21 126.5 11.6 81 225-305 14-98 (100)
53 3lqv_A PRE-mRNA branch site pr 99.7 1.1E-17 3.9E-22 134.7 6.9 76 80-159 6-83 (115)
54 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.9E-17 1.3E-21 140.3 10.6 81 226-306 70-155 (165)
55 2cq0_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 128.0 10.6 82 225-306 12-98 (103)
56 1x5u_A Splicing factor 3B subu 99.7 7.2E-17 2.5E-21 127.8 11.3 81 225-305 12-97 (105)
57 1x4d_A Matrin 3; structural ge 99.7 1.6E-17 5.6E-22 130.2 7.3 78 79-159 12-90 (102)
58 2dgs_A DAZ-associated protein 99.7 8.3E-17 2.8E-21 126.0 11.4 80 226-306 8-92 (99)
59 2cq3_A RNA-binding protein 9; 99.7 1.6E-16 5.4E-21 125.3 13.1 82 225-306 12-96 (103)
60 2dgu_A Heterogeneous nuclear r 99.7 1.3E-16 4.6E-21 125.8 12.5 80 226-308 9-88 (103)
61 2hvz_A Splicing factor, argini 99.7 3.2E-17 1.1E-21 128.9 8.8 73 83-159 1-73 (101)
62 2jvr_A Nucleolar protein 3; RN 99.7 4.8E-17 1.6E-21 129.7 9.9 77 228-304 28-106 (111)
63 2wbr_A GW182, gawky, LD47780P; 99.7 4.7E-17 1.6E-21 122.0 9.1 73 81-158 6-78 (89)
64 2dnz_A Probable RNA-binding pr 99.7 7.3E-17 2.5E-21 125.3 10.7 79 227-305 4-87 (95)
65 2cq1_A PTB-like protein L; RRM 99.7 1.4E-16 4.7E-21 124.9 12.3 80 226-306 13-94 (101)
66 1x5t_A Splicing factor 3B subu 99.7 7.8E-17 2.7E-21 125.3 10.7 80 227-306 4-89 (96)
67 1x5s_A Cold-inducible RNA-bind 99.7 6.4E-17 2.2E-21 127.4 10.3 81 226-306 10-95 (102)
68 1x4d_A Matrin 3; structural ge 99.7 4.8E-17 1.6E-21 127.5 9.4 78 226-304 13-93 (102)
69 2d9p_A Polyadenylate-binding p 99.7 7.2E-17 2.4E-21 127.3 10.5 82 225-306 12-96 (103)
70 2jvo_A Nucleolar protein 3; nu 99.7 5.5E-17 1.9E-21 129.1 9.8 80 224-306 27-106 (108)
71 2dgt_A RNA-binding protein 30; 99.7 1.8E-16 6.1E-21 122.4 12.3 78 225-305 7-84 (92)
72 2err_A Ataxin-2-binding protei 99.7 7.6E-17 2.6E-21 128.6 10.5 80 224-303 25-107 (109)
73 2e5h_A Zinc finger CCHC-type a 99.7 1E-16 3.4E-21 124.2 10.8 76 226-301 14-94 (94)
74 2cph_A RNA binding motif prote 99.7 1.4E-16 4.8E-21 126.5 11.9 81 225-305 12-99 (107)
75 2cqc_A Arginine/serine-rich sp 99.7 1.1E-16 3.9E-21 124.1 11.1 77 226-302 13-94 (95)
76 2do0_A HnRNP M, heterogeneous 99.7 2.7E-16 9.2E-21 126.4 13.6 80 226-305 13-96 (114)
77 4a8x_A RNA-binding protein wit 99.7 9.5E-17 3.3E-21 122.7 10.3 77 228-304 4-86 (88)
78 1oo0_B CG8781-PA, drosophila Y 99.7 9.1E-17 3.1E-21 128.3 10.6 80 226-305 24-108 (110)
79 1x4h_A RNA-binding protein 28; 99.7 1.5E-16 5.1E-21 127.2 11.9 81 226-306 13-104 (111)
80 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-16 5.1E-21 132.6 12.3 84 223-306 37-125 (139)
81 1x4c_A Splicing factor, argini 99.7 1.9E-16 6.5E-21 126.1 12.2 78 226-305 13-95 (108)
82 2fc9_A NCL protein; structure 99.7 1.7E-16 6E-21 124.6 11.8 80 226-305 13-93 (101)
83 2dnq_A RNA-binding protein 4B; 99.7 1E-16 3.5E-21 123.2 10.2 77 226-305 6-82 (90)
84 1fjc_A Nucleolin RBD2, protein 99.7 5.4E-17 1.8E-21 126.3 8.7 81 226-306 14-94 (96)
85 2cpe_A RNA-binding protein EWS 99.7 1.7E-16 5.8E-21 127.4 11.8 82 225-306 12-106 (113)
86 2dnp_A RNA-binding protein 14; 99.7 1.5E-16 5.2E-21 122.2 11.0 77 226-305 7-83 (90)
87 2cpf_A RNA binding motif prote 99.7 9.6E-17 3.3E-21 125.4 9.9 79 227-305 4-90 (98)
88 2dgv_A HnRNP M, heterogeneous 99.7 8.2E-17 2.8E-21 124.2 9.4 79 227-305 7-88 (92)
89 2dnh_A Bruno-like 5, RNA bindi 99.7 1.6E-16 5.5E-21 125.7 11.3 81 226-306 13-100 (105)
90 2cpd_A Apobec-1 stimulating pr 99.7 3.1E-16 1.1E-20 122.8 12.8 77 226-305 13-91 (99)
91 1x4f_A Matrin 3; structural ge 99.7 3.3E-17 1.1E-21 130.3 7.1 79 78-159 21-100 (112)
92 1wex_A Hypothetical protein (r 99.7 1.4E-16 4.8E-21 125.6 10.7 80 226-306 13-94 (104)
93 2xnq_A Nuclear polyadenylated 99.7 1.8E-16 6.1E-21 123.6 11.0 77 225-304 19-96 (97)
94 2dgx_A KIAA0430 protein; RRM d 99.7 2E-16 6.7E-21 123.2 11.2 78 227-304 8-91 (96)
95 2jrs_A RNA-binding protein 39; 99.7 9.3E-17 3.2E-21 127.8 9.5 81 224-304 22-107 (108)
96 2cqp_A RNA-binding protein 12; 99.7 1.7E-16 5.9E-21 123.9 10.9 78 227-304 14-96 (98)
97 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-16 3.6E-21 130.4 9.8 84 228-311 28-114 (130)
98 2dgp_A Bruno-like 4, RNA bindi 99.7 1.7E-16 5.7E-21 125.9 10.7 81 225-305 10-98 (106)
99 1p27_B RNA-binding protein 8A; 99.7 8.9E-17 3E-21 127.5 8.8 79 226-304 21-104 (106)
100 2e5j_A Methenyltetrahydrofolat 99.7 1.3E-16 4.3E-21 124.5 9.4 79 226-304 17-95 (97)
101 2cqh_A IGF-II mRNA-binding pro 99.7 1.5E-16 5.2E-21 123.0 9.8 78 227-306 7-86 (93)
102 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 128.6 9.4 80 226-306 29-110 (119)
103 1why_A Hypothetical protein ri 99.7 1.4E-16 4.9E-21 124.2 9.7 79 226-305 15-95 (97)
104 3p5t_L Cleavage and polyadenyl 99.7 2.1E-17 7.3E-22 127.1 4.8 76 229-304 2-84 (90)
105 2la4_A Nuclear and cytoplasmic 99.7 9.6E-17 3.3E-21 126.1 8.7 76 227-303 26-101 (101)
106 2ywk_A Putative RNA-binding pr 99.7 1.5E-16 5E-21 123.5 9.6 76 227-302 15-94 (95)
107 2la6_A RNA-binding protein FUS 99.7 1.6E-16 5.5E-21 124.4 9.9 76 226-301 11-99 (99)
108 2lkz_A RNA-binding protein 5; 99.7 6.9E-17 2.4E-21 125.2 7.4 80 78-159 5-93 (95)
109 1x4g_A Nucleolysin TIAR; struc 99.7 2.5E-16 8.4E-21 125.6 10.8 78 227-305 24-101 (109)
110 2a3j_A U1 small nuclear ribonu 99.7 1.2E-16 4E-21 130.7 9.0 80 226-305 27-112 (127)
111 2fc8_A NCL protein; structure 99.7 2.8E-16 9.7E-21 123.6 10.9 82 225-306 12-95 (102)
112 2hvz_A Splicing factor, argini 99.7 1.3E-16 4.3E-21 125.5 8.8 78 229-306 1-78 (101)
113 2khc_A Testis-specific RNP-typ 99.7 1.3E-16 4.6E-21 129.0 9.2 77 225-301 37-118 (118)
114 3zzy_A Polypyrimidine tract-bi 99.7 2E-16 6.8E-21 128.8 10.1 79 82-162 28-107 (130)
115 2cqd_A RNA-binding region cont 99.7 5.2E-16 1.8E-20 125.2 12.6 79 225-304 14-97 (116)
116 1wi8_A EIF-4B, eukaryotic tran 99.7 3E-16 1E-20 124.0 10.9 79 226-306 13-97 (104)
117 2err_A Ataxin-2-binding protei 99.7 1.3E-16 4.5E-21 127.2 8.8 81 75-159 22-105 (109)
118 2dhg_A TRNA selenocysteine ass 99.7 1.4E-16 4.9E-21 125.8 8.9 81 226-306 7-93 (104)
119 2cqi_A Nucleolysin TIAR; RNA r 99.7 5E-16 1.7E-20 122.5 12.0 79 77-159 10-91 (103)
120 3ex7_B RNA-binding protein 8A; 99.7 1.4E-16 4.9E-21 130.4 9.1 81 226-306 20-105 (126)
121 3ns6_A Eukaryotic translation 99.7 4.9E-17 1.7E-21 127.6 6.0 76 228-303 6-93 (100)
122 2lxi_A RNA-binding protein 10; 99.7 3.4E-17 1.1E-21 126.2 5.0 74 82-159 1-81 (91)
123 1wf1_A RNA-binding protein RAL 99.7 3.1E-16 1.1E-20 125.3 10.7 77 226-305 25-102 (110)
124 1x4a_A Splicing factor, argini 99.7 5.1E-16 1.7E-20 123.8 12.0 79 77-159 17-97 (109)
125 2la6_A RNA-binding protein FUS 99.7 3E-16 1E-20 122.9 10.4 75 79-157 10-97 (99)
126 3ulh_A THO complex subunit 4; 99.7 3.4E-16 1.2E-20 124.3 10.9 76 226-301 27-106 (107)
127 3n9u_C Cleavage and polyadenyl 99.7 1.3E-16 4.4E-21 135.5 8.8 76 80-159 53-135 (156)
128 2rs2_A Musashi-1, RNA-binding 99.7 2.3E-16 7.9E-21 125.8 9.8 82 224-306 21-107 (109)
129 2dng_A Eukaryotic translation 99.7 5.1E-16 1.8E-20 122.4 11.6 78 226-305 13-95 (103)
130 2div_A TRNA selenocysteine ass 99.7 1.9E-16 6.5E-21 123.9 9.0 78 227-304 8-95 (99)
131 2khc_A Testis-specific RNP-typ 99.7 5.9E-16 2E-20 125.2 12.2 73 77-151 35-112 (118)
132 2ytc_A PRE-mRNA-splicing facto 99.7 2.3E-16 7.8E-21 119.8 9.1 75 226-301 10-85 (85)
133 3ucg_A Polyadenylate-binding p 99.7 2.8E-16 9.7E-21 120.3 9.6 76 228-304 6-86 (89)
134 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.9E-16 9.9E-21 119.2 9.6 75 79-157 4-83 (85)
135 2m2b_A RNA-binding protein 10; 99.7 1.7E-16 6E-21 130.9 9.0 80 225-305 20-110 (131)
136 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.3E-21 131.3 8.1 80 225-304 43-127 (129)
137 1why_A Hypothetical protein ri 99.7 5.2E-16 1.8E-20 120.9 11.1 79 78-159 13-91 (97)
138 2e5h_A Zinc finger CCHC-type a 99.7 3.5E-16 1.2E-20 121.2 10.0 77 77-157 11-92 (94)
139 2kvi_A Nuclear polyadenylated 99.7 1.2E-16 4.3E-21 124.3 7.4 78 226-306 8-86 (96)
140 2dnz_A Probable RNA-binding pr 99.7 4.7E-16 1.6E-20 120.6 10.7 76 80-159 3-83 (95)
141 2cpj_A Non-POU domain-containi 99.7 4.5E-16 1.5E-20 121.8 10.5 78 226-304 13-90 (99)
142 2nlw_A Eukaryotic translation 99.7 3.2E-16 1.1E-20 124.1 9.8 78 226-303 13-100 (105)
143 1nu4_A U1A RNA binding domain; 99.7 2E-16 6.8E-21 123.3 8.3 80 226-305 6-91 (97)
144 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.6E-16 9E-21 119.9 8.8 76 80-159 4-84 (87)
145 1u6f_A Tcubp1, RNA-binding pro 99.7 1.3E-15 4.4E-20 126.9 13.7 79 77-159 37-120 (139)
146 2cq3_A RNA-binding protein 9; 99.7 1.1E-15 3.9E-20 120.4 12.7 79 77-159 10-91 (103)
147 2ek1_A RNA-binding protein 12; 99.7 2.3E-16 7.8E-21 122.4 8.5 75 228-302 15-94 (95)
148 1x5u_A Splicing factor 3B subu 99.7 5.1E-16 1.7E-20 122.8 10.6 79 77-159 10-93 (105)
149 2xnq_A Nuclear polyadenylated 99.7 4.4E-16 1.5E-20 121.4 10.1 75 78-159 18-93 (97)
150 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-16 8.5E-21 133.1 9.3 81 228-308 46-129 (164)
151 2dnm_A SRP46 splicing factor; 99.7 3.5E-16 1.2E-20 123.3 9.7 80 76-159 7-91 (103)
152 2cpx_A Hypothetical protein FL 99.7 3.5E-16 1.2E-20 125.9 9.8 82 225-306 22-108 (115)
153 2ytc_A PRE-mRNA-splicing facto 99.7 4.5E-16 1.5E-20 118.1 9.8 76 77-157 7-83 (85)
154 2x1f_A MRNA 3'-END-processing 99.7 3.7E-16 1.3E-20 121.6 9.5 75 81-159 1-80 (96)
155 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-16 1.6E-20 131.5 10.6 82 79-162 43-125 (164)
156 2dgv_A HnRNP M, heterogeneous 99.7 5.8E-16 2E-20 119.4 10.2 77 79-159 5-84 (92)
157 2cpz_A CUG triplet repeat RNA- 99.7 6.1E-16 2.1E-20 124.6 10.8 79 77-159 20-103 (115)
158 2dh8_A DAZ-associated protein 99.7 3.2E-16 1.1E-20 124.0 9.0 81 225-306 13-98 (105)
159 2cpf_A RNA binding motif prote 99.7 3.9E-16 1.3E-20 121.9 9.3 76 80-159 3-86 (98)
160 2jrs_A RNA-binding protein 39; 99.6 7E-16 2.4E-20 122.7 10.9 79 77-159 21-104 (108)
161 2dnh_A Bruno-like 5, RNA bindi 99.6 8.7E-16 3E-20 121.5 11.4 80 78-159 11-95 (105)
162 2dgw_A Probable RNA-binding pr 99.6 1E-15 3.5E-20 117.7 11.5 77 226-304 8-88 (91)
163 2cqc_A Arginine/serine-rich sp 99.6 6E-16 2.1E-20 120.0 10.2 78 77-158 10-92 (95)
164 2ywk_A Putative RNA-binding pr 99.6 4.1E-16 1.4E-20 121.0 9.1 78 77-158 11-92 (95)
165 1h2v_Z 20 kDa nuclear CAP bind 99.6 8.3E-16 2.8E-20 130.7 11.9 81 226-306 37-122 (156)
166 1p27_B RNA-binding protein 8A; 99.6 4.9E-16 1.7E-20 123.1 9.7 78 77-158 18-100 (106)
167 2cq2_A Hypothetical protein LO 99.6 2.4E-16 8.2E-21 125.4 7.8 80 79-159 22-104 (114)
168 1whw_A Hypothetical protein ri 99.6 5.5E-16 1.9E-20 121.3 9.8 77 79-159 5-86 (99)
169 2a3j_A U1 small nuclear ribonu 99.6 4.4E-16 1.5E-20 127.3 9.6 78 79-160 26-109 (127)
170 2do4_A Squamous cell carcinoma 99.6 1E-15 3.4E-20 120.0 11.3 79 77-159 12-94 (100)
171 2cpi_A CCR4-NOT transcription 99.6 2.6E-16 8.8E-21 126.0 8.0 78 227-304 14-102 (111)
172 3s7r_A Heterogeneous nuclear r 99.6 7.3E-16 2.5E-20 117.5 10.2 75 225-300 8-87 (87)
173 1x4e_A RNA binding motif, sing 99.6 3.9E-16 1.3E-20 118.5 8.6 68 80-149 3-75 (85)
174 2dnq_A RNA-binding protein 4B; 99.6 8.5E-16 2.9E-20 118.0 10.6 74 79-159 5-78 (90)
175 2cq0_A Eukaryotic translation 99.6 5E-16 1.7E-20 122.5 9.4 80 76-159 9-93 (103)
176 3n9u_C Cleavage and polyadenyl 99.6 3.7E-16 1.3E-20 132.7 9.2 77 227-303 54-137 (156)
177 1x5p_A Negative elongation fac 99.6 1.8E-15 6.1E-20 117.9 12.5 77 226-305 13-89 (97)
178 2dgs_A DAZ-associated protein 99.6 8.7E-16 3E-20 120.1 10.7 77 78-159 6-87 (99)
179 2kt5_A RNA and export factor-b 99.6 3.1E-15 1.1E-19 122.1 14.4 80 225-304 32-115 (124)
180 2cpj_A Non-POU domain-containi 99.6 7.2E-16 2.5E-20 120.6 10.2 78 77-159 10-87 (99)
181 3pgw_S U1-70K; protein-RNA com 99.6 1.5E-16 5.2E-21 157.1 7.8 80 226-305 100-184 (437)
182 3md1_A Nuclear and cytoplasmic 99.6 5.7E-16 1.9E-20 117.0 9.2 74 82-159 1-79 (83)
183 2cph_A RNA binding motif prote 99.6 9.8E-16 3.4E-20 121.6 10.9 79 77-159 10-95 (107)
184 2dgo_A Cytotoxic granule-assoc 99.6 7.9E-16 2.7E-20 123.9 10.4 79 77-159 10-93 (115)
185 2e5i_A Heterogeneous nuclear r 99.6 1.2E-15 4.1E-20 123.7 11.4 77 83-162 26-103 (124)
186 1x4c_A Splicing factor, argini 99.6 7.3E-16 2.5E-20 122.7 10.0 76 80-159 13-91 (108)
187 1x4f_A Matrin 3; structural ge 99.6 1.4E-16 4.8E-21 126.7 5.8 78 226-304 23-103 (112)
188 2diu_A KIAA0430 protein; struc 99.6 7.2E-16 2.5E-20 116.6 9.3 73 228-305 8-86 (96)
189 2krb_A Eukaryotic translation 99.6 2.9E-16 1E-20 118.1 7.3 64 82-145 1-73 (81)
190 2la4_A Nuclear and cytoplasmic 99.6 6E-16 2.1E-20 121.5 9.4 74 81-159 26-99 (101)
191 3egn_A RNA-binding protein 40; 99.6 5.3E-16 1.8E-20 130.0 9.6 82 225-306 42-133 (143)
192 1p1t_A Cleavage stimulation fa 99.6 2.5E-16 8.4E-21 124.4 7.1 78 228-305 8-90 (104)
193 1fj7_A Nucleolin RBD1, protein 99.6 2.2E-16 7.4E-21 124.1 6.6 79 226-305 15-97 (101)
194 2jvo_A Nucleolar protein 3; nu 99.6 5.8E-16 2E-20 123.2 9.2 76 77-159 26-101 (108)
195 2cq4_A RNA binding motif prote 99.6 2.8E-16 9.6E-21 126.3 7.3 77 227-304 24-105 (114)
196 2dis_A Unnamed protein product 99.6 8.2E-16 2.8E-20 122.5 10.0 79 227-305 7-94 (109)
197 2jwn_A Embryonic polyadenylate 99.6 6.8E-16 2.3E-20 126.0 9.7 77 228-305 36-117 (124)
198 2d9p_A Polyadenylate-binding p 99.6 1.2E-15 4.2E-20 120.2 10.8 79 77-159 10-91 (103)
199 2dgp_A Bruno-like 4, RNA bindi 99.6 7.5E-16 2.6E-20 122.1 9.6 81 77-159 8-94 (106)
200 2mss_A Protein (musashi1); RNA 99.6 2.8E-16 9.6E-21 116.3 6.6 70 230-300 1-75 (75)
201 1whx_A Hypothetical protein ri 99.6 4.7E-16 1.6E-20 124.4 8.4 76 228-304 10-85 (111)
202 2e5i_A Heterogeneous nuclear r 99.6 6.5E-16 2.2E-20 125.2 9.2 79 229-308 26-107 (124)
203 2jvr_A Nucleolar protein 3; RN 99.6 3.7E-16 1.2E-20 124.6 7.4 74 81-158 27-102 (111)
204 1s79_A Lupus LA protein; RRM, 99.6 2.9E-16 9.8E-21 123.7 6.7 75 227-302 10-88 (103)
205 1x4b_A Heterogeneous nuclear r 99.6 9.6E-16 3.3E-20 123.6 9.9 79 227-306 26-109 (116)
206 1wg1_A KIAA1579 protein, homol 99.6 7.3E-16 2.5E-20 117.9 8.7 76 227-304 4-79 (88)
207 2kxn_B Transformer-2 protein h 99.6 1.2E-15 4E-20 125.4 10.5 79 77-159 41-124 (129)
208 2div_A TRNA selenocysteine ass 99.6 6.5E-16 2.2E-20 120.9 8.5 80 78-159 5-92 (99)
209 1s79_A Lupus LA protein; RRM, 99.6 6.5E-16 2.2E-20 121.7 8.6 73 79-154 8-84 (103)
210 2cqg_A TDP-43, TAR DNA-binding 99.6 3.3E-15 1.1E-19 117.7 12.6 78 226-305 13-95 (103)
211 2krb_A Eukaryotic translation 99.6 2E-16 6.9E-21 119.0 5.3 69 229-297 2-80 (81)
212 3p5t_L Cleavage and polyadenyl 99.6 2.9E-16 1E-20 120.6 6.3 72 83-158 2-80 (90)
213 1x4h_A RNA-binding protein 28; 99.6 1.6E-15 5.6E-20 121.1 10.9 79 77-159 10-99 (111)
214 2cpe_A RNA-binding protein EWS 99.6 1E-15 3.6E-20 122.7 9.7 80 76-159 9-101 (113)
215 2cqb_A Peptidyl-prolyl CIS-tra 99.6 6.5E-16 2.2E-20 121.6 8.2 78 78-159 8-90 (102)
216 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-15 4.5E-20 119.8 9.9 78 78-159 8-90 (102)
217 3ns6_A Eukaryotic translation 99.6 4.5E-16 1.5E-20 122.1 7.1 76 79-158 3-90 (100)
218 1x4e_A RNA binding motif, sing 99.6 1.4E-16 4.6E-21 121.1 3.9 75 227-301 4-83 (85)
219 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.7E-16 9.4E-21 123.3 5.7 77 226-304 17-99 (100)
220 2j76_E EIF-4B, EIF4B, eukaryot 99.6 4.4E-16 1.5E-20 122.2 6.9 76 78-159 15-96 (100)
221 3d2w_A TAR DNA-binding protein 99.6 9.7E-16 3.3E-20 117.4 8.5 74 79-158 8-81 (89)
222 2fy1_A RNA-binding motif prote 99.6 2.1E-15 7.3E-20 121.5 11.0 77 79-159 4-84 (116)
223 2do0_A HnRNP M, heterogeneous 99.6 1.8E-15 6.3E-20 121.5 10.6 79 77-159 10-92 (114)
224 1x5t_A Splicing factor 3B subu 99.6 5.9E-16 2E-20 120.3 7.4 76 80-159 3-84 (96)
225 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2E-15 6.8E-20 125.8 11.1 75 226-300 61-140 (140)
226 3ulh_A THO complex subunit 4; 99.6 1.4E-15 4.7E-20 120.8 9.5 72 78-151 25-100 (107)
227 1nu4_A U1A RNA binding domain; 99.6 8.8E-16 3E-20 119.6 8.2 78 78-159 4-87 (97)
228 3lqv_A PRE-mRNA branch site pr 99.6 1E-15 3.4E-20 123.2 8.8 78 227-304 7-86 (115)
229 2dgt_A RNA-binding protein 30; 99.6 1.8E-15 6.2E-20 116.7 9.7 76 77-159 5-80 (92)
230 1oo0_B CG8781-PA, drosophila Y 99.6 1.3E-15 4.5E-20 121.6 9.2 79 77-159 21-104 (110)
231 4a8x_A RNA-binding protein wit 99.6 1.6E-15 5.5E-20 115.7 9.4 73 81-157 3-81 (88)
232 2dgx_A KIAA0430 protein; RRM d 99.6 1.5E-15 5.1E-20 118.1 9.3 76 80-159 7-88 (96)
233 1x4g_A Nucleolysin TIAR; struc 99.6 1.7E-15 5.8E-20 120.7 9.7 77 78-159 21-97 (109)
234 1wg5_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 119.9 9.4 78 226-304 13-95 (104)
235 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-15 9.3E-20 116.9 10.6 77 78-159 15-92 (97)
236 2dhg_A TRNA selenocysteine ass 99.6 2.2E-15 7.4E-20 119.0 10.1 77 79-159 6-88 (104)
237 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.4E-20 120.6 8.6 69 77-145 10-87 (105)
238 1whx_A Hypothetical protein ri 99.6 8.5E-16 2.9E-20 122.9 7.6 76 79-159 7-82 (111)
239 2cq2_A Hypothetical protein LO 99.6 2.1E-15 7.1E-20 120.0 9.7 76 227-303 24-106 (114)
240 2m2b_A RNA-binding protein 10; 99.6 1.8E-15 6.2E-20 124.7 9.7 78 77-159 18-106 (131)
241 2db1_A Heterogeneous nuclear r 99.6 1.8E-15 6.1E-20 122.4 9.3 77 226-303 15-98 (118)
242 1x5o_A RNA binding motif, sing 99.6 3.6E-15 1.2E-19 119.8 11.0 80 225-304 22-113 (114)
243 2e44_A Insulin-like growth fac 99.6 2.7E-15 9.4E-20 116.5 9.8 79 226-304 13-93 (96)
244 2cpi_A CCR4-NOT transcription 99.6 1.4E-15 4.9E-20 121.6 8.4 80 76-159 9-99 (111)
245 2e5g_A U6 snRNA-specific termi 99.6 2.7E-15 9.3E-20 116.1 9.7 76 228-304 8-83 (94)
246 2ki2_A SS-DNA binding protein 99.6 2E-16 6.7E-21 121.5 3.1 75 229-304 2-81 (90)
247 2diu_A KIAA0430 protein; struc 99.6 4.2E-15 1.4E-19 112.4 10.3 73 81-162 7-85 (96)
248 2cpy_A RNA-binding protein 12; 99.6 1.4E-15 4.7E-20 122.3 8.1 78 226-304 13-95 (114)
249 2dgu_A Heterogeneous nuclear r 99.6 2.6E-15 8.9E-20 118.3 9.6 75 78-159 7-81 (103)
250 2dnp_A RNA-binding protein 14; 99.6 2.5E-15 8.6E-20 115.3 9.2 74 79-159 6-79 (90)
251 2cq4_A RNA binding motif prote 99.6 1.8E-15 6.1E-20 121.6 8.7 77 78-159 21-102 (114)
252 2i2y_A Fusion protein consists 99.6 3E-15 1E-19 126.4 10.3 79 77-159 68-146 (150)
253 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.6E-16 1.9E-20 115.2 5.1 71 229-300 1-76 (77)
254 2dh8_A DAZ-associated protein 99.6 3E-15 1E-19 118.4 9.6 78 77-159 11-93 (105)
255 2cpd_A Apobec-1 stimulating pr 99.6 6.7E-15 2.3E-19 115.1 11.5 75 78-159 11-87 (99)
256 1wi8_A EIF-4B, eukaryotic tran 99.6 2.8E-15 9.7E-20 118.3 9.3 75 79-159 12-92 (104)
257 3s7r_A Heterogeneous nuclear r 99.6 2.5E-15 8.5E-20 114.5 8.6 73 77-152 6-83 (87)
258 2cqd_A RNA-binding region cont 99.6 4E-15 1.4E-19 119.9 10.3 78 76-158 11-93 (116)
259 3d2w_A TAR DNA-binding protein 99.6 4.7E-15 1.6E-19 113.6 10.0 75 227-305 10-86 (89)
260 1wel_A RNA-binding protein 12; 99.6 8.6E-16 2.9E-20 125.4 6.2 77 226-303 23-104 (124)
261 2kvi_A Nuclear polyadenylated 99.6 3.6E-15 1.2E-19 116.0 9.2 75 78-159 6-81 (96)
262 1wf1_A RNA-binding protein RAL 99.6 6.5E-15 2.2E-19 117.5 10.9 74 79-159 24-98 (110)
263 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 118.7 6.1 73 81-157 14-91 (95)
264 2cqp_A RNA-binding protein 12; 99.6 1.6E-15 5.6E-20 118.3 7.2 77 78-158 11-92 (98)
265 3ex7_B RNA-binding protein 8A; 99.6 3.8E-15 1.3E-19 121.9 9.7 79 77-159 17-100 (126)
266 2hgl_A HNRPF protein, heteroge 99.6 1.8E-15 6.3E-20 125.0 7.8 77 226-303 42-125 (136)
267 1wez_A HnRNP H', FTP-3, hetero 99.6 1.9E-15 6.4E-20 118.9 7.4 76 227-304 14-93 (102)
268 1wg1_A KIAA1579 protein, homol 99.6 3.1E-15 1.1E-19 114.4 8.3 74 80-159 3-76 (88)
269 2cqh_A IGF-II mRNA-binding pro 99.6 1.8E-15 6.1E-20 116.9 6.9 75 79-159 5-81 (93)
270 1p1t_A Cleavage stimulation fa 99.6 1.1E-15 3.9E-20 120.5 5.9 77 79-159 5-86 (104)
271 1x5o_A RNA binding motif, sing 99.6 8.4E-15 2.9E-19 117.6 11.0 69 77-145 20-92 (114)
272 3beg_B Splicing factor, argini 99.6 2.3E-15 7.7E-20 121.2 7.6 76 227-304 15-95 (115)
273 3tyt_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 131.7 10.6 78 227-304 3-81 (205)
274 2dng_A Eukaryotic translation 99.6 6E-15 2.1E-19 116.2 9.7 76 78-159 11-91 (103)
275 2rs2_A Musashi-1, RNA-binding 99.6 3.2E-15 1.1E-19 119.1 7.9 75 77-154 20-99 (109)
276 3ucg_A Polyadenylate-binding p 99.6 4.6E-15 1.6E-19 113.5 8.5 73 81-158 5-82 (89)
277 2kt5_A RNA and export factor-b 99.6 5.6E-15 1.9E-19 120.6 9.5 78 78-159 31-112 (124)
278 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 9.4E-15 3.2E-19 121.7 10.8 72 78-151 59-135 (140)
279 2lea_A Serine/arginine-rich sp 99.6 1.4E-15 4.9E-20 126.0 5.7 83 73-159 38-125 (135)
280 2lcw_A RNA-binding protein FUS 99.4 1.7E-16 5.8E-21 128.1 0.0 81 226-306 5-98 (116)
281 1iqt_A AUF1, heterogeneous nuc 99.6 1.4E-15 4.7E-20 112.5 4.9 70 230-300 1-75 (75)
282 2dnn_A RNA-binding protein 12; 99.6 7.7E-15 2.6E-19 116.6 9.4 73 228-302 16-92 (109)
283 3beg_B Splicing factor, argini 99.6 3.8E-15 1.3E-19 119.9 7.6 67 80-150 14-80 (115)
284 1fjc_A Nucleolin RBD2, protein 99.6 3.1E-15 1E-19 116.3 6.6 79 77-159 11-89 (96)
285 2dis_A Unnamed protein product 99.6 5.4E-15 1.8E-19 117.7 8.1 76 80-159 6-90 (109)
286 2hzc_A Splicing factor U2AF 65 99.6 5.8E-15 2E-19 112.4 7.9 71 79-153 3-84 (87)
287 2bz2_A Negative elongation fac 99.6 6.9E-15 2.4E-19 119.3 8.8 77 226-305 37-113 (121)
288 2lmi_A GRSF-1, G-rich sequence 99.6 2.1E-15 7E-20 119.8 5.5 77 226-303 9-92 (107)
289 2mss_A Protein (musashi1); RNA 99.6 3.2E-15 1.1E-19 110.5 6.1 65 84-151 1-70 (75)
290 1h2v_Z 20 kDa nuclear CAP bind 99.6 9E-15 3.1E-19 124.3 9.7 78 78-159 35-117 (156)
291 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.5E-15 8.6E-20 111.6 5.4 69 83-154 1-74 (77)
292 1x5p_A Negative elongation fac 99.6 2.3E-14 7.9E-19 111.6 11.1 75 78-159 11-85 (97)
293 1wf0_A TDP-43, TAR DNA-binding 99.6 5.1E-15 1.8E-19 113.1 7.2 75 227-305 4-80 (88)
294 2fc9_A NCL protein; structure 99.6 6.5E-15 2.2E-19 115.6 7.9 78 78-159 11-89 (101)
295 1fj7_A Nucleolin RBD1, protein 99.6 4E-15 1.4E-19 116.8 6.6 77 78-159 13-93 (101)
296 3q2s_C Cleavage and polyadenyl 99.6 2.7E-15 9.4E-20 135.6 6.5 77 227-303 67-150 (229)
297 2cqg_A TDP-43, TAR DNA-binding 99.6 2.1E-14 7.1E-19 113.1 10.7 77 77-159 10-91 (103)
298 2fc8_A NCL protein; structure 99.6 9.2E-15 3.2E-19 114.9 8.5 79 77-159 10-90 (102)
299 1wg5_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 114.4 9.5 72 79-153 12-88 (104)
300 2db1_A Heterogeneous nuclear r 99.6 6E-15 2.1E-19 119.3 7.5 75 79-158 14-95 (118)
301 2cpy_A RNA-binding protein 12; 99.6 5.4E-15 1.9E-19 118.8 7.2 77 78-159 11-92 (114)
302 2cpx_A Hypothetical protein FL 99.6 9.1E-15 3.1E-19 117.5 8.6 77 79-159 22-103 (115)
303 2dgw_A Probable RNA-binding pr 99.6 1.1E-14 3.8E-19 111.9 8.5 75 79-159 7-85 (91)
304 3pgw_A U1-A; protein-RNA compl 99.5 8.7E-14 3E-18 129.8 16.3 79 78-159 203-281 (282)
305 2dnn_A RNA-binding protein 12; 99.5 7.7E-15 2.6E-19 116.6 7.7 72 78-153 12-87 (109)
306 1wf0_A TDP-43, TAR DNA-binding 99.5 6.7E-15 2.3E-19 112.4 6.9 74 80-159 3-76 (88)
307 2e44_A Insulin-like growth fac 99.5 2.3E-14 8E-19 111.2 9.9 76 80-159 13-90 (96)
308 2ki2_A SS-DNA binding protein 99.5 2.8E-15 9.4E-20 115.1 4.5 72 83-159 2-78 (90)
309 1wez_A HnRNP H', FTP-3, hetero 99.5 8.7E-15 3E-19 115.1 7.4 71 79-153 12-86 (102)
310 2f3j_A RNA and export factor b 99.5 1.2E-14 4E-19 126.1 8.6 78 226-303 86-167 (177)
311 2hzc_A Splicing factor U2AF 65 99.5 1.3E-14 4.4E-19 110.5 7.9 70 228-299 6-86 (87)
312 2xs2_A Deleted in azoospermia- 99.5 6.1E-15 2.1E-19 115.9 6.2 76 227-304 8-87 (102)
313 2hgl_A HNRPF protein, heteroge 99.5 6.7E-15 2.3E-19 121.6 6.5 72 79-153 41-119 (136)
314 2jwn_A Embryonic polyadenylate 99.5 1.1E-14 3.6E-19 118.8 7.6 75 80-159 34-113 (124)
315 2e5g_A U6 snRNA-specific termi 99.5 3E-14 1E-18 110.2 9.5 71 79-152 5-75 (94)
316 2dha_A FLJ20171 protein; RRM d 99.5 8.2E-15 2.8E-19 118.9 6.5 75 228-303 23-105 (123)
317 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.4E-14 8.1E-19 122.9 9.7 79 77-159 67-150 (165)
318 1b7f_A Protein (SXL-lethal pro 99.5 3.1E-14 1.1E-18 121.9 10.4 77 228-304 3-84 (168)
319 1x4b_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 116.7 7.6 76 79-159 24-104 (116)
320 2kn4_A Immunoglobulin G-bindin 99.5 2.6E-14 8.7E-19 121.7 9.6 77 79-159 67-148 (158)
321 2dnl_A Cytoplasmic polyadenyla 99.5 1.3E-14 4.4E-19 116.6 7.2 60 79-139 5-72 (114)
322 1fxl_A Paraneoplastic encephal 99.5 4.1E-14 1.4E-18 120.9 10.8 77 228-304 2-83 (167)
323 4f02_A Polyadenylate-binding p 99.5 3.7E-14 1.3E-18 126.9 10.7 77 227-303 14-95 (213)
324 1iqt_A AUF1, heterogeneous nuc 99.5 7.2E-15 2.5E-19 108.6 4.8 67 84-153 1-72 (75)
325 2lmi_A GRSF-1, G-rich sequence 99.5 1.2E-14 4.2E-19 115.3 6.5 70 78-150 7-83 (107)
326 1wel_A RNA-binding protein 12; 99.5 1.5E-14 5.2E-19 118.0 7.2 76 79-159 22-102 (124)
327 2hgn_A Heterogeneous nuclear r 99.5 3.9E-15 1.3E-19 123.5 3.5 77 227-305 45-125 (139)
328 3q2s_C Cleavage and polyadenyl 99.5 1.7E-14 5.8E-19 130.4 7.5 75 81-159 67-148 (229)
329 2bz2_A Negative elongation fac 99.5 4.7E-14 1.6E-18 114.4 8.7 74 79-159 36-109 (121)
330 3egn_A RNA-binding protein 40; 99.5 2.6E-14 9E-19 119.6 7.3 77 79-159 42-128 (143)
331 2xs2_A Deleted in azoospermia- 99.5 1.5E-14 5.3E-19 113.6 5.4 71 77-151 4-78 (102)
332 2pe8_A Splicing factor 45; RRM 99.5 1.2E-13 4E-18 109.0 10.3 76 228-303 8-94 (105)
333 2hgm_A HNRPF protein, heteroge 99.5 3.1E-14 1.1E-18 115.8 7.0 75 226-302 40-120 (126)
334 2j8a_A Histone-lysine N-methyl 99.5 4.9E-14 1.7E-18 112.7 7.9 75 229-303 3-96 (136)
335 2f3j_A RNA and export factor b 99.5 6E-14 2E-18 121.6 9.1 78 78-159 84-165 (177)
336 3pgw_S U1-70K; protein-RNA com 99.5 1E-13 3.4E-18 136.9 11.9 77 79-159 99-180 (437)
337 3md3_A Nuclear and cytoplasmic 99.5 9.7E-14 3.3E-18 118.4 10.0 76 229-304 1-80 (166)
338 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.8E-19 120.1 4.4 70 78-151 42-115 (139)
339 2hgm_A HNRPF protein, heteroge 99.5 7.1E-14 2.4E-18 113.7 8.4 70 79-152 39-114 (126)
340 3u1l_A PRE-mRNA-splicing facto 99.5 4.5E-14 1.5E-18 127.2 7.9 79 225-304 131-230 (240)
341 2dha_A FLJ20171 protein; RRM d 99.5 2.7E-14 9.2E-19 115.9 5.8 68 80-150 21-96 (123)
342 2lcw_A RNA-binding protein FUS 99.2 3E-15 1E-19 120.7 0.0 77 79-159 4-93 (116)
343 2dnl_A Cytoplasmic polyadenyla 99.5 1.7E-13 5.9E-18 109.9 10.1 74 227-302 7-87 (114)
344 2dit_A HIV TAT specific factor 99.5 3.4E-13 1.2E-17 107.8 11.4 79 226-304 13-103 (112)
345 3u1l_A PRE-mRNA-splicing facto 99.5 7.8E-14 2.7E-18 125.7 8.5 65 79-144 131-204 (240)
346 3tht_A Alkylated DNA repair pr 99.5 7.9E-14 2.7E-18 132.3 8.5 82 78-160 14-98 (345)
347 3nmr_A Cugbp ELAV-like family 99.4 2.3E-13 8E-18 117.1 9.3 76 80-157 93-173 (175)
348 2adc_A Polypyrimidine tract-bi 99.4 1.7E-13 5.7E-18 124.0 8.5 79 226-304 32-111 (229)
349 1l3k_A Heterogeneous nuclear r 99.4 2.7E-13 9.1E-18 119.2 9.4 78 226-304 11-93 (196)
350 2pe8_A Splicing factor 45; RRM 99.4 4.2E-13 1.4E-17 105.8 9.4 77 79-159 5-92 (105)
351 1qm9_A Polypyrimidine tract-bi 99.4 1.7E-13 5.9E-18 120.8 7.6 77 228-304 3-80 (198)
352 2qfj_A FBP-interacting repress 99.4 2.5E-13 8.6E-18 121.3 8.7 76 228-303 28-108 (216)
353 3sde_A Paraspeckle component 1 99.4 6.2E-13 2.1E-17 122.7 10.2 77 226-303 20-96 (261)
354 2voo_A Lupus LA protein; RNA-b 99.4 5.1E-13 1.8E-17 117.4 9.2 75 228-303 109-187 (193)
355 1fje_B Nucleolin RBD12, protei 99.4 2.9E-13 9.8E-18 116.9 7.2 78 226-304 11-92 (175)
356 2j8a_A Histone-lysine N-methyl 99.4 2.2E-13 7.6E-18 108.9 5.6 70 83-154 3-91 (136)
357 3v4m_A Splicing factor U2AF 65 99.4 1.6E-12 5.4E-17 102.5 9.5 77 227-303 4-97 (105)
358 2g4b_A Splicing factor U2AF 65 99.4 1.1E-12 3.7E-17 112.8 8.4 74 228-303 4-88 (172)
359 2yh0_A Splicing factor U2AF 65 99.4 1.1E-12 3.9E-17 115.3 8.7 75 228-304 4-89 (198)
360 2cjk_A Nuclear polyadenylated 99.4 1.1E-12 3.8E-17 112.1 8.0 74 228-303 3-81 (167)
361 2dit_A HIV TAT specific factor 99.4 2.5E-12 8.5E-17 102.8 9.2 78 78-159 11-100 (112)
362 2voo_A Lupus LA protein; RNA-b 99.4 1.4E-12 4.7E-17 114.7 8.3 70 81-153 108-181 (193)
363 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.1E-12 1.4E-16 98.9 9.9 66 238-305 27-92 (100)
364 1jmt_A Splicing factor U2AF 35 99.3 5.1E-13 1.7E-17 105.2 4.2 68 233-300 20-103 (104)
365 3ue2_A Poly(U)-binding-splicin 99.3 4.2E-12 1.4E-16 102.0 9.5 75 228-302 20-108 (118)
366 3v4m_A Splicing factor U2AF 65 99.3 2.9E-12 9.9E-17 101.0 7.6 77 79-159 2-95 (105)
367 3tht_A Alkylated DNA repair pr 99.3 3.9E-12 1.3E-16 120.7 9.5 75 226-301 16-97 (345)
368 3s6e_A RNA-binding protein 39; 99.3 1.5E-11 5.3E-16 98.0 10.1 77 228-304 7-94 (114)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 3E-11 1E-15 94.0 10.1 72 82-159 10-88 (100)
370 1jmt_A Splicing factor U2AF 35 99.2 3.7E-12 1.3E-16 100.2 3.0 62 87-150 20-97 (104)
371 3ue2_A Poly(U)-binding-splicin 99.2 3E-11 1E-15 97.0 8.1 75 81-159 19-107 (118)
372 3s6e_A RNA-binding protein 39; 99.2 8.2E-11 2.8E-15 93.8 8.2 76 80-159 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 8.4E-10 2.9E-14 82.6 8.2 72 228-303 7-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.0 1.3E-09 4.3E-14 87.1 9.0 70 79-149 15-86 (121)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 4.2E-14 87.2 8.4 74 227-301 17-94 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 9.6E-09 3.3E-13 77.2 7.1 71 228-302 15-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 8.3E-09 2.8E-13 77.2 6.1 68 81-154 6-81 (91)
378 3dxb_A Thioredoxin N-terminall 98.7 1.3E-08 4.6E-13 91.1 6.6 65 239-303 140-213 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 2.3E-08 7.7E-13 75.2 4.3 68 81-154 14-90 (95)
380 3dxb_A Thioredoxin N-terminall 98.5 2.7E-07 9.1E-12 82.6 7.5 73 82-158 124-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 8.2E-07 2.8E-11 68.0 8.7 71 228-299 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 4.2E-06 1.4E-10 64.1 7.5 70 80-152 19-93 (117)
383 1wey_A Calcipressin 1; structu 97.9 4.2E-05 1.4E-09 58.5 7.6 74 229-303 6-84 (104)
384 2dhx_A Poly (ADP-ribose) polym 97.7 0.00034 1.2E-08 53.2 10.4 57 79-138 5-66 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.4 0.0016 5.6E-08 49.4 10.5 77 228-308 8-89 (104)
386 1wey_A Calcipressin 1; structu 97.3 0.00038 1.3E-08 53.1 6.0 73 82-159 5-82 (104)
387 1uw4_A UPF3X; nonsense mediate 97.2 0.0015 5E-08 49.0 7.8 63 83-145 2-71 (91)
388 1whv_A Poly(A)-specific ribonu 97.2 0.00072 2.5E-08 50.7 6.0 54 83-140 17-70 (100)
389 3ctr_A Poly(A)-specific ribonu 97.0 0.00088 3E-08 50.4 5.1 53 84-140 8-60 (101)
390 1whv_A Poly(A)-specific ribonu 97.0 0.0026 8.8E-08 47.8 7.3 55 228-286 16-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 96.9 0.0025 8.6E-08 50.0 7.2 70 228-300 24-94 (119)
392 3pq1_A Poly(A) RNA polymerase; 96.8 0.00069 2.3E-08 66.3 3.5 56 81-137 52-107 (464)
393 1uw4_A UPF3X; nonsense mediate 96.7 0.0057 2E-07 45.8 7.5 63 229-291 2-71 (91)
394 3ctr_A Poly(A)-specific ribonu 96.4 0.0026 8.8E-08 47.9 3.9 54 229-286 7-60 (101)
395 1wwh_A Nucleoporin 35, nucleop 96.4 0.0081 2.8E-07 47.1 6.8 65 78-145 20-84 (119)
396 3p3d_A Nucleoporin 53; structu 95.9 0.02 6.7E-07 45.6 6.8 71 229-301 8-97 (132)
397 2l08_A Regulator of nonsense t 95.7 0.019 6.6E-07 43.2 5.6 66 80-145 7-79 (97)
398 3pq1_A Poly(A) RNA polymerase; 95.6 0.006 2E-07 59.7 3.3 55 228-283 53-107 (464)
399 2l08_A Regulator of nonsense t 95.2 0.042 1.4E-06 41.4 6.1 73 228-300 9-93 (97)
400 3d45_A Poly(A)-specific ribonu 89.2 0.84 2.9E-05 45.3 7.7 56 82-141 440-495 (507)
401 3p3d_A Nucleoporin 53; structu 89.1 0.29 1E-05 38.8 3.4 62 82-145 7-87 (132)
402 3d45_A Poly(A)-specific ribonu 84.4 2.7 9.3E-05 41.6 8.3 55 228-286 440-494 (507)
403 1jgn_B PAIP2, polyadenylate-bi 82.8 0.58 2E-05 24.7 1.4 14 11-24 4-17 (26)
404 4eyt_A Telomerase associated p 55.6 56 0.0019 23.7 7.3 55 228-285 12-66 (129)
405 2g0c_A ATP-dependent RNA helic 55.0 9.8 0.00033 26.6 3.2 62 239-301 12-75 (76)
406 3j21_T 50S ribosomal protein L 50.1 34 0.0011 24.8 5.4 53 85-137 25-81 (86)
407 4eyt_A Telomerase associated p 41.0 1E+02 0.0034 22.3 8.5 59 80-141 10-68 (129)
408 1jh4_B PAIP1, polyadenylate-bi 39.1 15 0.0005 19.9 1.4 12 12-23 5-16 (26)
409 3lpe_A Putative transcription 38.2 62 0.0021 23.5 5.4 34 108-141 39-72 (92)
410 1vq8_S 50S ribosomal protein L 37.1 36 0.0012 24.6 3.8 50 86-135 25-78 (85)
411 3ts2_A Protein LIN-28 homolog 36.5 6.9 0.00024 31.7 -0.2 28 97-127 2-29 (148)
412 3u5e_X 60S ribosomal protein L 30.7 82 0.0028 25.1 5.2 53 85-137 81-137 (142)
413 3ts2_A Protein LIN-28 homolog 29.4 9.8 0.00034 30.8 -0.4 28 243-273 2-29 (148)
414 4e8u_A Putative uncharacterize 28.9 86 0.0029 25.9 5.2 54 84-137 14-81 (172)
415 2zkr_s 60S ribosomal protein L 28.4 87 0.003 25.4 5.0 53 85-137 95-151 (156)
416 4a17_R RPL23A, 60S ribosomal p 28.4 93 0.0032 25.0 5.2 52 86-137 90-145 (150)
417 3h7h_B Transcription elongatio 27.1 52 0.0018 24.8 3.4 34 108-141 40-73 (106)
418 3iz5_X 60S ribosomal protein L 22.4 74 0.0025 25.6 3.5 51 86-136 92-146 (152)
419 4e8u_A Putative uncharacterize 21.6 1.2E+02 0.0041 25.0 4.8 48 229-276 13-73 (172)
420 3fry_A Probable copper-exporti 21.4 1.8E+02 0.0062 19.1 5.5 55 83-139 7-61 (73)
421 2f06_A Conserved hypothetical 20.5 2.9E+02 0.01 21.2 10.0 113 97-290 21-135 (144)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.4e-33 Score=252.58 Aligned_cols=163 Identities=20% Similarity=0.305 Sum_probs=135.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..+.++|||+|||+++||++|+++|++||+|.+|++++ +++|||||+|.+.++|++|++.+++..+. |+. +
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~--g~~--i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK--GKP--V 87 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC--Ccc--c
Confidence 44678999999999999999999999999999999876 45899999999999999999999998765 563 3
Q ss_pred eccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEE
Q 046223 154 KNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVV 233 (408)
Q Consensus 154 ~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V 233 (408)
++.++... . . .......+|||
T Consensus 88 ~~~~~~~~-----------------~-~-----------------------------------------~~~~~~~~l~v 108 (213)
T 4f02_A 88 RIMWSQRD-----------------P-S-----------------------------------------LRKSGVGNIFI 108 (213)
T ss_dssp EEEECCCC-----------------T-H-----------------------------------------HHHHCTTEEEE
T ss_pred cccccccc-----------------c-c-----------------------------------------ccccccccceE
Confidence 33222100 0 0 00011378999
Q ss_pred cCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 234 FNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 234 ~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
+||+..+|+++|+++|++||.|..++ ..+.++|||||+|.+.++|++|++.|||..|+|+.|+|.+++++.
T Consensus 109 ~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 109 KNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred CCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 99999999999999999999999883 344578999999999999999999999999999999999998754
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.8e-31 Score=229.80 Aligned_cols=157 Identities=18% Similarity=0.314 Sum_probs=134.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
|+|||+|||.++|+++|+++|++||.|.+|++.+ +++|||||+|.+.++|++|++.|+|..+. |+. +++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~--i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE--NNI--VKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--CEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC--CCe--eEEEEc
Confidence 6899999999999999999999999999999875 45899999999999999999999998876 663 333332
Q ss_pred CccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCC
Q 046223 159 SGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDS 238 (408)
Q Consensus 159 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~ 238 (408)
... .........+|||+|||.
T Consensus 77 ~~~-----------------------------------------------------------~~~~~~~~~~l~v~nl~~ 97 (166)
T 3md3_A 77 FQS-----------------------------------------------------------QQSSSDDTFNLFVGDLNV 97 (166)
T ss_dssp CCC-----------------------------------------------------------CCCCCTTCEEEEEESCCT
T ss_pred CCC-----------------------------------------------------------CCCCCCCCceEEECCCCC
Confidence 100 001123358999999999
Q ss_pred CCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 239 GVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.+++++|+++|++||.|..+. .++.++|+|||+|.+.++|.+|++.|||..++|+.|+|.||++
T Consensus 98 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 98 NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999882 4577899999999999999999999999999999999999863
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=9.7e-31 Score=231.83 Aligned_cols=169 Identities=14% Similarity=0.209 Sum_probs=132.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
......++|||+|||.++|+++|+++|+.||.|.+|++.+ .++|||||+|.+.++|++|++. ++..|. |+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~--g~~l 84 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD--GRVV 84 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC--CEEe
Confidence 4456789999999999999999999999999999999876 3589999999999999999975 776654 6643
Q ss_pred ceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceE
Q 046223 152 GLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTI 231 (408)
Q Consensus 152 ~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l 231 (408)
.+. ++.... . ..........++|
T Consensus 85 ~v~--~~~~~~----------------~---------------------------------------~~~~~~~~~~~~l 107 (196)
T 1l3k_A 85 EPK--RAVSRE----------------D---------------------------------------SQRPGAHLTVKKI 107 (196)
T ss_dssp EEE--ECCC------------------------------------------------------------------CCSEE
T ss_pred eee--cccCcc----------------c---------------------------------------ccccccCCCcceE
Confidence 333 222000 0 0000011234899
Q ss_pred EEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 232 VVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 232 ~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
||+|||.++|+++|+++|+.||.|..++ .++.++|||||+|.+.++|.+|++. +|..|+|+.|.|.++.++...
T Consensus 108 ~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 108 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999999999999999999999883 3677899999999999999999986 899999999999999887644
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.7e-30 Score=224.40 Aligned_cols=155 Identities=17% Similarity=0.314 Sum_probs=133.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
++++|||+|||.++|+++|+++|+.||.|.+|++.+ .++|||||+|.+.++|++|++.|+|..+. |+. +++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~--l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR--NKR--LKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEE--CEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC--CcE--EEE
Confidence 578999999999999999999999999999999876 24799999999999999999999998875 663 444
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
.++... .......+|||+|
T Consensus 78 ~~~~~~-------------------------------------------------------------~~~~~~~~l~v~n 96 (168)
T 1b7f_A 78 SYARPG-------------------------------------------------------------GESIKDTNLYVTN 96 (168)
T ss_dssp EECCCC-------------------------------------------------------------SSTTTTCEEEEES
T ss_pred EecCCC-------------------------------------------------------------cccCCCCCEEEeC
Confidence 332200 0112348999999
Q ss_pred CCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEe
Q 046223 236 LDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFS 300 (408)
Q Consensus 236 Lp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a 300 (408)
||..+++++|+++|++||.|..+. .++.++|+|||+|.+.++|.+|++.|||..+.| +.|+|+||
T Consensus 97 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 97 LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999999998883 256778999999999999999999999999988 99999986
No 5
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.8e-30 Score=230.63 Aligned_cols=192 Identities=15% Similarity=0.188 Sum_probs=135.4
Q ss_pred CCCCEEEEcCCC-CCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 80 GPTRTLVLSYVP-GDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 80 ~~~rtlfV~nLp-~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
.++++|||+||+ .++|+++|+++|++||.|.+|++++.++|||||+|.+.++|++||+.|||..|. || .|++.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g~--~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMF--GQ--KMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEET--TE--ECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEEC--Cc--eEEEEEc
Confidence 357899999999 899999999999999999999999878999999999999999999999999876 67 4566565
Q ss_pred CccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCc-CCCCCCCCCCceEEEcCCC
Q 046223 159 SGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPT-CNAVPDGNNQGTIVVFNLD 237 (408)
Q Consensus 159 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~-~~~~~~~~~~~~l~V~nLp 237 (408)
.......... .....+... .+.. .+... ..+..+. ........+.++|||+|||
T Consensus 78 ~~~~~~p~~~--~~~~~~~~~---------------------~~~~-~~~~~-~r~~~~~~~~~~~~~~p~~~l~v~NLp 132 (205)
T 3tyt_A 78 KQPAIMPGQS--YGLEDGSCS---------------------YKDF-SESRN-NRFSTPEQAAKNRIQHPSNVLHFFNAP 132 (205)
T ss_dssp SCSCCCCCSC--CBCTTSCBS---------------------EEEC-TTCTT-CSCSSHHHHTTSCCCCCCSEEEEEEEC
T ss_pred cCCccCCCcc--cccccCCcc---------------------cccc-CCCcc-ccccCcccccccccCCCcceEEEeCCC
Confidence 4322100000 000000000 0000 00000 0000000 0000011235899999999
Q ss_pred CCCcHHHHHHHHhcCCCc--eeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe----EEEEEEe
Q 046223 238 SGVSSSTLKEIFQAFGPV--KELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK----HVVIEFS 300 (408)
Q Consensus 238 ~~~t~~~L~~~F~~~G~v--~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~----~l~v~~a 300 (408)
.++|+++|+++|++||.| ..++ ..+..+|+|||+|.+.++|.+|+..|||..|.|+ .+.|+|+
T Consensus 133 ~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 133 LEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp TTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999998 6663 2234569999999999999999999999999986 5666665
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.9e-30 Score=234.10 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=144.6
Q ss_pred CCCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 77 PSTGPTRTLVLSYVPG-DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~-~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
....++++|||+|||. ++|+++|+++|++||.|.+|++.+..+|||||+|.+.++|++|++.|||..|. |+ .+++
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~--~l~v 104 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH--GK--PIRI 104 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS--SS--BCEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC--Ce--EEEE
Confidence 3455789999999999 99999999999999999999999877999999999999999999999998875 66 3555
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCC-CCCCCCCCceEEEc
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCN-AVPDGNNQGTIVVF 234 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~-~~~~~~~~~~l~V~ 234 (408)
.++............. .... ...+... ...+ ...+... .........+|||+
T Consensus 105 ~~a~~~~~~~~~~~~~---~~~~-----------~~~~~~~--~~~~-----------~~~~~~~~~~~~~~~~~~l~V~ 157 (229)
T 2adc_A 105 TLSKHQNVQLPREGQE---DQGL-----------TKDYGNS--PLHR-----------FKKPGSKNFQNIFPPSATLHLS 157 (229)
T ss_dssp ECCSCCCCCCCCSSSS---TTTT-----------EEECTTC--SSCC-----------CCSTTSGGGTTCCCSCSEEEEE
T ss_pred EEecCccccCcccccc---cccc-----------ccccccC--cccc-----------cCCccccccccCCCCCCEEEEe
Confidence 5554221110000000 0000 0000000 0000 0000000 00112346899999
Q ss_pred CCCCCCcHHHHHHHHhcCC-CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEEEecCC
Q 046223 235 NLDSGVSSSTLKEIFQAFG-PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY-GKHVVIEFSRPG 303 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G-~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~ 303 (408)
||+..+++++|+++|++|| .|..++.....+|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 158 nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 158 NIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999 99999765567999999999999999999999999999 999999999864
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.9e-30 Score=225.52 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=131.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-------cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
++++|||+|||.++|+++|+++|++||+|.+|++.+ +++|||||+|.+.++|++|++.|+|..+.. ++...+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~-~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP-GMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT-TCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc-CCccce
Confidence 578999999999999999999999999999999875 358999999999999999999999977642 221122
Q ss_pred eccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEE
Q 046223 154 KNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVV 233 (408)
Q Consensus 154 ~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V 233 (408)
.+.++... ........+|||
T Consensus 81 ~~~~~~~~------------------------------------------------------------~~~~~~~~~l~v 100 (175)
T 3nmr_A 81 QMKPADSE------------------------------------------------------------KNNAVEDRKLFI 100 (175)
T ss_dssp EEEECGGG------------------------------------------------------------CCSCGGGSEEEE
T ss_pred EEcccccc------------------------------------------------------------ccccCCCCeEEE
Confidence 22211100 001123489999
Q ss_pred cCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeC---CeEEEEEEec
Q 046223 234 FNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY---GKHVVIEFSR 301 (408)
Q Consensus 234 ~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 301 (408)
+|||..+|+++|+++|++||.|..++ ..+.++|||||+|.+.++|.+|++.|||..+. |+.|+|.||.
T Consensus 101 ~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 101 GMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred cCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999999999999999883 35667999999999999999999999998776 4999999984
No 8
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=7.6e-30 Score=239.40 Aligned_cols=218 Identities=18% Similarity=0.249 Sum_probs=144.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVR----RDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~----~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
....++++|||+|||.++|+++|+ ++|++||.|.+|++.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~- 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--DK- 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeC--Cc-
Confidence 455679999999999999999966 9999999999999876 56899999999999999999999998876 66
Q ss_pred cceeccccCcccc--ccCCCCCCCcc----cCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCC----------------
Q 046223 151 YGLKNPYSSGLML--MNNDNNNNNLA----TGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGR---------------- 208 (408)
Q Consensus 151 l~~~~~~s~~~s~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------- 208 (408)
.+++.|+....- ........... ..+........... ...............+.
T Consensus 81 -~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 81 -PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKK---AVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred -EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhh---hccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 455656543321 00000000000 00000000000000 00000000000000000
Q ss_pred -----------------Cc-----------ccc---ccCCcCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCcee
Q 046223 209 -----------------PV-----------WAQ---FIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE 257 (408)
Q Consensus 209 -----------------~~-----------~~~---~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~ 257 (408)
.. ..+ ...+...........++|||+||+..+++++|+++|++||.|.+
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 00 000 00000011123345789999999999999999999999999999
Q ss_pred eccCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEEEec
Q 046223 258 LRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY-GKHVVIEFSR 301 (408)
Q Consensus 258 v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~ 301 (408)
|+.....+|||||+|.+.++|.+|++.|||..|+ |+.|+|+|++
T Consensus 237 v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 237 VRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9655455799999999999999999999999999 9999999986
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.7e-30 Score=222.69 Aligned_cols=155 Identities=22% Similarity=0.408 Sum_probs=131.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
++++|||+|||.++|+++|+++|+.||.|.+|++.+ +++|||||+|.+.++|++|++.|+|..+. |+. +++
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~--l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ--TKT--IKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--CEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC--Cce--EEE
Confidence 368999999999999999999999999999999876 23699999999999999999999998875 563 344
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
.++... .......+|||+|
T Consensus 77 ~~~~~~-------------------------------------------------------------~~~~~~~~l~v~n 95 (167)
T 1fxl_A 77 SYARPS-------------------------------------------------------------SASIRDANLYVSG 95 (167)
T ss_dssp EECCCC-------------------------------------------------------------CGGGTTCEEEEES
T ss_pred EecCCC-------------------------------------------------------------cccCCCCcEEECC
Confidence 332200 0011247899999
Q ss_pred CCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE--EEEEEe
Q 046223 236 LDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH--VVIEFS 300 (408)
Q Consensus 236 Lp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~--l~v~~a 300 (408)
||..+++++|+++|++||.|..++ .++.++|||||+|.+.++|.+|++.|||..+.|+. |+|+||
T Consensus 96 l~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 96 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999998883 35667999999999999999999999999999975 888876
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.3e-30 Score=227.01 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=135.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe----ecCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME----RLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~----~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
....+.++|||+|||.++|+++|+++|+.||.|..+.+. ..++|||||+|.+.++|++|+ .|||..|. |+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~-- 82 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF--GNE-- 82 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET--TEE--
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC--CeE--
Confidence 345678999999999999999999999999976552221 257999999999999999999 49998876 664
Q ss_pred eeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEE
Q 046223 153 LKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIV 232 (408)
Q Consensus 153 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~ 232 (408)
+++.++... .........+||
T Consensus 83 l~v~~~~~~-----------------------------------------------------------~~~~~~~~~~l~ 103 (175)
T 1fje_B 83 IKLEKPKGR-----------------------------------------------------------DSKKVRAARTLL 103 (175)
T ss_dssp EEEECCCCS-----------------------------------------------------------SCSTTGGGGEEE
T ss_pred EEEecCCCc-----------------------------------------------------------cccccccCCEEE
Confidence 444332210 000112248999
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 233 VFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 233 V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
|+|||..+++++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|++++
T Consensus 104 v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 104 AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999988667789999999999999999999999999999999999999875
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=9.9e-30 Score=225.70 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=137.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVF----G-------EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~----G-------~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
..+++|||+|||.++|+++|+++|++| | .|..+.+. +++|||||+|.+.++|++|+ .|||..|. |
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g~afV~F~~~~~A~~Al-~l~g~~~~--g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQ--G 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTTEEEEEESCSHHHHHHG-GGTTEEET--T
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCCEEEEEeCCHHHHHHHH-HhcCCEEc--C
Confidence 357999999999999999999999999 5 67777665 57999999999999999999 89998875 6
Q ss_pred cccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCC
Q 046223 149 QSYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQ 228 (408)
Q Consensus 149 r~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 228 (408)
+. +++.++....... .. . .. .....+...........
T Consensus 78 ~~--i~v~~~~~~~~~~----------~~-----------------------~-----~~---~~~~~~~~~~~~~~~~~ 114 (198)
T 2yh0_A 78 QS--LKIRRPHDYQPLP----------GM-----------------------S-----EN---PSVYVPGVVSTVVPDSA 114 (198)
T ss_dssp EE--EEEECCCCCCCCC----------CS-----------------------S-----SC---SSCCCTTSSCCCSSCCC
T ss_pred ce--EEEeCCCCCCCCC----------CC-----------------------c-----CC---CcCCCCCCccCCCCCCC
Confidence 64 4444433110000 00 0 00 00000111111123456
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
++|||+|||..+++++|+++|++||.|..++ .++.++|||||+|.+.++|.+|++.|||..++|+.|+|++++++
T Consensus 115 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 115 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 9999999999999999999999999998883 36677999999999999999999999999999999999999876
Q ss_pred CC
Q 046223 304 GH 305 (408)
Q Consensus 304 ~~ 305 (408)
..
T Consensus 195 ~~ 196 (198)
T 2yh0_A 195 AK 196 (198)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.4e-30 Score=234.44 Aligned_cols=171 Identities=18% Similarity=0.294 Sum_probs=137.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.+ +++|||||+|.+.++|++|++.|+|..|. |+. ++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~--l~ 101 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG--GRN--IK 101 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC---CC--CE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC--Cee--EE
Confidence 3568999999999999999999999999999999975 36999999999999999999999998875 664 34
Q ss_pred ccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEc
Q 046223 155 NPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVF 234 (408)
Q Consensus 155 ~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~ 234 (408)
+.++.... .......... .......+|||+
T Consensus 102 v~~~~~~~----------------~~~~~~~~~~----------------------------------~~~~~~~~l~v~ 131 (216)
T 2qfj_A 102 VGRPSNIG----------------QAQPIIDQLA----------------------------------EEARAFNRIYVA 131 (216)
T ss_dssp EECCSCCG----------------GGHHHHHHHH----------------------------------HHHTTSCEEEEE
T ss_pred EecCCCcc----------------ccchhhhhhh----------------------------------cccCCCcEEEEe
Confidence 33322110 0000000000 001224899999
Q ss_pred CCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 235 NLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 235 nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
||+.++++++|+++|++||.|..++ .++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 132 nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 132 SVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp CCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999883 356779999999999999999999999999999999999998764
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=9.9e-30 Score=220.54 Aligned_cols=154 Identities=20% Similarity=0.327 Sum_probs=131.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVF----G-------EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~----G-------~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
+++++|||+|||.++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|++|+ .|||..|. |
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g~afV~f~~~~~A~~A~-~~~~~~~~--g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQ--G 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTTEEEEEESSHHHHHHHG-GGTTCEET--T
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCCEEEEEeCCHHHHHHHH-HhCCcEec--C
Confidence 357899999999999999999999999 6 77887776 57999999999999999999 89998875 6
Q ss_pred cccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCC
Q 046223 149 QSYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQ 228 (408)
Q Consensus 149 r~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 228 (408)
+.+.+. ++... ......
T Consensus 78 ~~i~v~--~~~~~-------------------------------------------------------------~~~~~~ 94 (172)
T 2g4b_A 78 QSLKIR--RPHDY-------------------------------------------------------------QPLPGA 94 (172)
T ss_dssp EECEEE--CCSSC-------------------------------------------------------------CCCTTT
T ss_pred ceeeec--CCccc-------------------------------------------------------------CCCCCC
Confidence 643333 21100 001124
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
.+|||+|||..+++++|+++|++||.|..++ .++.++|||||+|.+.++|.+|++.|||..++|+.|+|+||
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 8999999999999999999999999999883 36777999999999999999999999999999999999997
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.5e-29 Score=224.83 Aligned_cols=192 Identities=18% Similarity=0.249 Sum_probs=141.7
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 81 PTRTLVLSYVPG-DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 81 ~~rtlfV~nLp~-~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
.+++|||+|||. ++|+++|+++|++||.|.+|++.+..+|||||+|.+.++|++|++.|||..|. |+. +++.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~--l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH--GKP--IRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCS--SCC--CEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeec--CeE--EEEEEec
Confidence 368999999999 99999999999999999999999877999999999999999999999998875 663 5555544
Q ss_pred ccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCC-CCCCCCCCceEEEcCCCC
Q 046223 160 GLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCN-AVPDGNNQGTIVVFNLDS 238 (408)
Q Consensus 160 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~-~~~~~~~~~~l~V~nLp~ 238 (408)
.......... ... ... . ..+... ... .+..+... ......+..+|||+||+.
T Consensus 78 ~~~~~~~~~~-~~~-~~~-~-----------~~~~~~--~~~-----------r~~~~~~~~~~~~~~~~~~l~v~nl~~ 130 (198)
T 1qm9_A 78 HQNVQLPREG-QED-QGL-T-----------KDYGNS--PLH-----------RFKKPGSKNFQNIFPPSATLHLSNIPP 130 (198)
T ss_dssp CCSCCCSSSS-SSS-SSC-E-----------EESSCC--CTT-----------SSSSCCCCCCSCCCCCCCEEEECCCCT
T ss_pred CCCcCCCCcC-Ccc-ccc-c-----------ccccCC--chh-----------hccCccccccccCCCCccEEEEeCCCC
Confidence 2211000000 000 000 0 000000 000 00000000 011123468999999999
Q ss_pred CCcHHHHHHHHhcCC-CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC-CeEEEEEEecCC
Q 046223 239 GVSSSTLKEIFQAFG-PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY-GKHVVIEFSRPG 303 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G-~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~ 303 (408)
.+++++|+++|++|| .|..++.....+|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 131 ~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 131 SVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999 99998765567999999999999999999999999999 999999999764
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.3e-30 Score=224.96 Aligned_cols=155 Identities=12% Similarity=0.230 Sum_probs=128.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
++++|||+|||.++|+++|+++|+.||.|.+|++.+ +++|||||+|.+.++|++|++. +..+ .|+.+ .+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i--~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVI--DP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEEC--CC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEc--cc
Confidence 578999999999999999999999999999999875 4589999999999999999985 3333 25532 22
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
.++... . ......+|||+|
T Consensus 76 ~~~~~~-------------------~------------------------------------------~~~~~~~l~V~n 94 (167)
T 2cjk_A 76 KRAIPR-------------------D------------------------------------------EQDKTGKIFVGG 94 (167)
T ss_dssp EECCCH-------------------H------------------------------------------HHHHCEEEEEEE
T ss_pred ccccch-------------------h------------------------------------------hccCCCeEEECC
Confidence 221100 0 001137899999
Q ss_pred CCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 236 LDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 236 Lp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|.+|++ ++|..++|+.|+|.|++++
T Consensus 95 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 95 IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999999999999999999999883 357789999999999999999998 9999999999999999875
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.2e-27 Score=224.52 Aligned_cols=152 Identities=18% Similarity=0.327 Sum_probs=133.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
.++++|||+|||.++|+++|+++|+.|| |..|.+ .+++|||||+|.+.++|++|++.|||..|. |+. +.+.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~--g~~--i~v~~~- 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLR--ERE--LSVQLQ- 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEET--TEE--CEEEEC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeC--CeE--EEEEec-
Confidence 3578999999999999999999999999 999988 468999999999999999999999998865 553 333211
Q ss_pred ccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCC
Q 046223 160 GLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSG 239 (408)
Q Consensus 160 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~ 239 (408)
. ...+|||+|||.+
T Consensus 93 --------------------------------------------------------~----------~~~~l~v~nlp~~ 106 (284)
T 3smz_A 93 --------------------------------------------------------P----------TDALLCVANLPPS 106 (284)
T ss_dssp --------------------------------------------------------C----------CSCEEEEESCCTT
T ss_pred --------------------------------------------------------C----------CCCEEEEcCCCCc
Confidence 0 1379999999999
Q ss_pred CcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 240 VSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 240 ~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
+++++|+++|+.||.|..++ .++.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.+..
T Consensus 107 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 107 LTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred CCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999998882 467789999999999999999999999999999999999997654
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.3e-27 Score=224.51 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=138.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..++|||+|||.++|+++|+++|+.||.|..|++.+ .++|||||+|.+.++|.+|++.|+|..|. |+. +.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~--i~v 169 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG--PRT--LYV 169 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--CEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--CcE--EEE
Confidence 457999999999999999999999999999998875 35899999999999999999999998875 663 444
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
.++.... .........+|||+|
T Consensus 170 ~~a~~~~----------------------------------------------------------~~~~~~~~~~l~v~n 191 (284)
T 3smz_A 170 HWTDAGQ----------------------------------------------------------LTPALLHSRCLCVDR 191 (284)
T ss_dssp EECCGGG----------------------------------------------------------CCTTTTSCSEEEEEC
T ss_pred EECCCCC----------------------------------------------------------CCcccCCccEEEEec
Confidence 4433110 001112358999999
Q ss_pred CCCCC-cHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 236 LDSGV-SSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 236 Lp~~~-t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
||..+ ++++|+++|+.||.|..++ ..+.++|+|||+|.+.++|.+|++.|||..++|+.|+|.|++++..+
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 99995 9999999999999998883 45677999999999999999999999999999999999999887653
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1e-27 Score=222.50 Aligned_cols=155 Identities=23% Similarity=0.326 Sum_probs=133.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
.....++|||+|||.++|+++|+++|+.||.|..|.+. +++|||||+|.+.++|++|++.|+|..|. |+. +++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg~afV~f~~~~~A~~A~~~l~g~~i~--g~~--l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRGFGFIRLESRTLAEIAKAELDGTILK--SRP--LRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEET--TEE--CEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCcEEEEEECCHHHHHHHHHHcCCcEEC--Cce--eEeee
Confidence 34567899999999999999999999999999999987 47999999999999999999999998875 563 33322
Q ss_pred cCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCC
Q 046223 158 SSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLD 237 (408)
Q Consensus 158 s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp 237 (408)
+. ...+|||+||+
T Consensus 93 a~-------------------------------------------------------------------~~~~l~v~nl~ 105 (261)
T 3sde_A 93 AT-------------------------------------------------------------------HGAALTVKNLS 105 (261)
T ss_dssp CC-------------------------------------------------------------------CSSEEEEESCC
T ss_pred cc-------------------------------------------------------------------cCCcccccCCC
Confidence 11 13789999999
Q ss_pred CCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhC-CceeC---CeEEEEEEecCCC
Q 046223 238 SGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMN-GQEIY---GKHVVIEFSRPGG 304 (408)
Q Consensus 238 ~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~-g~~~~---g~~l~v~~a~~~~ 304 (408)
..+|+++|+++|+.||.|..|. .++.++|||||+|.+.++|.+|++.|| |..+. |+.|.|.++....
T Consensus 106 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 106 PVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999999999883 467789999999999999999999995 55555 8999999997653
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.3e-27 Score=225.23 Aligned_cols=156 Identities=15% Similarity=0.208 Sum_probs=128.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec---CccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL---MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~---~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
......++|||+|||.++|+++|+++|+.||.|..|++.+. ++|||||+|.+.++|++|++ ++|..|. |+. +
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~--g~~--i 110 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG--QNE--I 110 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET--TEE--C
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC--CcE--E
Confidence 45677899999999999999999999999999999999863 58999999999999999995 8997765 553 2
Q ss_pred eccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEE
Q 046223 154 KNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVV 233 (408)
Q Consensus 154 ~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V 233 (408)
.+.++ ...+|||
T Consensus 111 ~v~~~--------------------------------------------------------------------~~~~l~v 122 (292)
T 2ghp_A 111 IVSHL--------------------------------------------------------------------TECTLWM 122 (292)
T ss_dssp EEEEC--------------------------------------------------------------------CSCEEEE
T ss_pred EEEEC--------------------------------------------------------------------CCCEEEE
Confidence 32110 1489999
Q ss_pred cCCCCCCcHHHHHHHHhcCC-Cceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 234 FNLDSGVSSSTLKEIFQAFG-PVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 234 ~nLp~~~t~~~L~~~F~~~G-~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
+|||..+++++|+++|+.|| .|..++ ..+.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+...
T Consensus 123 ~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 123 TNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred ECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 99999999999999999999 999883 2356799999999999999999999999999999999999986643
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=1.8e-27 Score=224.29 Aligned_cols=164 Identities=15% Similarity=0.245 Sum_probs=133.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFG-EVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G-~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..++|||+|||.++|+++|+++|+.|| .|..|++.+ .++|||||+|.+.++|.+|++.|+|..|. |+. +.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~v 191 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE--GYT--LVT 191 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET--TEE--CEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcE--EEE
Confidence 578999999999999999999999999 999999875 46999999999999999999999998876 563 444
Q ss_pred cccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcC
Q 046223 156 PYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFN 235 (408)
Q Consensus 156 ~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~n 235 (408)
.++.... + . . + .........+|||+|
T Consensus 192 ~~a~~~~--------------~-~---------------------~------~------------~~~~~~~~~~l~v~n 217 (292)
T 2ghp_A 192 KVSNPLE--------------K-S---------------------K------R------------TDSATLEGREIMIRN 217 (292)
T ss_dssp EECCCC---------------------------------------------------------------CCTTTEEEEEE
T ss_pred EECCCCc--------------c-c---------------------c------c------------ccccCCCCceEEEEC
Confidence 4433110 0 0 0 0 001123358999999
Q ss_pred CCCC-CcHHHHHHHHhcCCCceeecc------CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 236 LDSG-VSSSTLKEIFQAFGPVKELRE------TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 236 Lp~~-~t~~~L~~~F~~~G~v~~v~~------~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
||.. +++++|+++|+.||.|..|+. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|++++
T Consensus 218 lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 218 LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999 999999999999999999832 2778999999999999999999 99999999999999999875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=3.1e-21 Score=164.91 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....+|||+|||.++++++|+++|+.||.|..++ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999883 36788999999999999999999999999999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 148 ~~~~~ 152 (158)
T 2kn4_A 148 RYGRP 152 (158)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.6e-20 Score=159.02 Aligned_cols=138 Identities=21% Similarity=0.258 Sum_probs=106.1
Q ss_pred cCccEEEEEECCHHHHHHHHHHh-cCccccccccccceeccccCccccccCCCCCCCcccCCCChhHHHHHHhhhhccCC
Q 046223 117 LMEGIVTVHFYDLRHAEMAFKEI-REQHMQLQQQSYGLKNPYSSGLMLMNNDNNNNNLATGCYDNQVVAESLMIMNSYAP 195 (408)
Q Consensus 117 ~~kG~afV~F~~~~~A~~Ai~~l-ng~~i~~~gr~l~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (408)
+-+|+++|+|.+.++|++|++.+ ||..+. | .+++.++....... ...
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~--G---~~~~~~a~~~~~~~----------~~~----------------- 58 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVD--G---EWTYDDATKTFTVT----------EGS----------------- 58 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCC--C---EEEEETTTTEEEEE----------CSS-----------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCC--C---ceecccccCccccc----------ccc-----------------
Confidence 45999999999999999999999 998877 3 25555443221000 000
Q ss_pred CCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCH
Q 046223 196 VLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDV 275 (408)
Q Consensus 196 ~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~ 275 (408)
...............++|||+|||.++++++|+++|++||.|.+|+....++|||||+|.+.
T Consensus 59 ------------------~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~ 120 (150)
T 2i2y_A 59 ------------------HHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDP 120 (150)
T ss_dssp ------------------SSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSH
T ss_pred ------------------ccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCH
Confidence 00000001112334689999999999999999999999999999976555799999999999
Q ss_pred HHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 276 RDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 276 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
++|.+|++.|||..|+|+.|+|+|++++.
T Consensus 121 ~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 121 RDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.1e-20 Score=150.93 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
.+.+|||+|||+++||++|+++|++||.|.+|++.+ .++|||||+|.+.++|++|++.|+|..|. ||. |++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~--g~~--i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN--DRK--VFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET--TEE--CEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC--CEE--EEEEE
Confidence 356899999999999999999999999999999886 35899999999999999999999998876 674 44444
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=138.80 Aligned_cols=75 Identities=20% Similarity=0.465 Sum_probs=70.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+|||+|||.++|+++|+++|++||.|.+++ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+||+|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 57899999999999999999999999999883 4678899999999999999999999999999999999999976
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=133.76 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=71.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...++++|||+|||.++||++|+++|++||.|.+|++. +.||||||+|.+.++|.+|++.|+|..+.+.|| .+++.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr--~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGH--PAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTE--EEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCc--EEEEEe
Confidence 44578999999999999999999999999999999987 479999999999999999999999988666788 577777
Q ss_pred cCc
Q 046223 158 SSG 160 (408)
Q Consensus 158 s~~ 160 (408)
++.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 763
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=7e-19 Score=146.02 Aligned_cols=80 Identities=28% Similarity=0.459 Sum_probs=73.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+|||.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|+|++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 358999999999999999999999999999883 356789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
++...
T Consensus 126 ~~~~~ 130 (135)
T 2lea_A 126 YGRPP 130 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=131.49 Aligned_cols=78 Identities=19% Similarity=0.402 Sum_probs=70.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCC-Cceeec-----cCCCCccEEEEEECCHHHHHHHHHHhC-CceeCCeEEEEEEe
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFG-PVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMN-GQEIYGKHVVIEFS 300 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~-g~~~~g~~l~v~~a 300 (408)
+++|||+|||.++|+++|+++|++|| .|.+|+ .++.++|||||+|.+.++|++|++.++ +..++|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 37899999999999999999999999 788873 467889999999999999999999874 56899999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 28
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=131.38 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=68.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...+.++|||+|||+++||++|+++|++||+|.+|++++ .||||||+|.+.++|++|++.|++....+.|| .|++.|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr--~l~V~~ 88 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--PIYIQF 88 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTE--ECCBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEEE
Confidence 345678999999999999999999999999999999985 59999999999999999999987643334477 566767
Q ss_pred cCcc
Q 046223 158 SSGL 161 (408)
Q Consensus 158 s~~~ 161 (408)
+..+
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6533
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=9e-18 Score=135.39 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
..+|||+|||+++|+++|+++|++||.|.+|+ ..+.++|||||+|.+.++|++|++.|||..|+|+.|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 47899999999999999999999999999883 344578999999999999999999999999999999999998765
Q ss_pred CC
Q 046223 305 HS 306 (408)
Q Consensus 305 ~~ 306 (408)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 30
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=131.86 Aligned_cols=76 Identities=21% Similarity=0.365 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
..+++|||+|||.++||++|+++|++||+|.+|++.+ +++|||||+|.+.++|++|++.|||..|. || .|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--gr--~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ--SK--TIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TE--ECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC--CE--EEE
Confidence 3567899999999999999999999999999999875 45899999999999999999999998876 67 455
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
|.|++
T Consensus 93 V~~Ak 97 (99)
T 4fxv_A 93 VSYAR 97 (99)
T ss_dssp EEECC
T ss_pred EEEee
Confidence 55543
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=133.02 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=72.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+||++++++++|+++|++||.|.+|+ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+++..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 58999999999999999999999999999983 4578899999999999999999999999999999999999976
Q ss_pred CCC
Q 046223 303 GGH 305 (408)
Q Consensus 303 ~~~ 305 (408)
...
T Consensus 86 ~~~ 88 (110)
T 3s8s_A 86 GQQ 88 (110)
T ss_dssp THH
T ss_pred CcH
Confidence 543
No 32
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-17 Score=129.10 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
....++++|||+|||+++||++|+++|++||.|..|.+.+ .||||||+|.+.++|++|++.|++..+.+.|| .+++.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr--~l~V~ 86 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQ--QAFFN 86 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSS--BCEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEE
Confidence 3445789999999999999999999999999999998875 69999999999999999999998876555677 46666
Q ss_pred ccCc
Q 046223 157 YSSG 160 (408)
Q Consensus 157 ~s~~ 160 (408)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 6653
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=132.75 Aligned_cols=81 Identities=27% Similarity=0.478 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
...++|||+||+.++++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3458999999999999999999999999999883 366788999999999999999999999999999999999998
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
++...
T Consensus 85 ~~~~~ 89 (116)
T 2fy1_A 85 KPSFQ 89 (116)
T ss_dssp CSSCS
T ss_pred CCCCC
Confidence 76543
No 34
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=128.57 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCce--eCCeEEEEEEecC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQE--IYGKHVVIEFSRP 302 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~l~v~~a~~ 302 (408)
..++++|||+|||.++|+++|+++|++||.|.+++.. +.+|||||+|++.++|.+|++.|+|.. +.|+.|.|+|++.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 3456999999999999999999999999999999644 468999999999999999999999875 8899999999987
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-17 Score=127.68 Aligned_cols=82 Identities=33% Similarity=0.540 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....++|||+|||..+++++|+++|++||.|..|+ ....++|||||+|.+.++|++|++.|||..|.|+.|+|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34569999999999999999999999999999883 233468999999999999999999999999999999999998
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 86644
No 36
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=9.6e-17 Score=129.28 Aligned_cols=82 Identities=23% Similarity=0.426 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+||+..+++++|+++|+.||.|..|+ .++..+|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34569999999999999999999999999999883 3667789999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++++...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9877644
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=128.11 Aligned_cols=76 Identities=17% Similarity=0.386 Sum_probs=68.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCC--ceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCc----eeCCeEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGP--VKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQ----EIYGKHV 295 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~--v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~~~g~~l 295 (408)
.-.+|||+||++++|+++|+++|++||. |.+| +.++.++|||||+|.+.++|++|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3489999999999999999999999995 4455 246788999999999999999999999997 5999999
Q ss_pred EEEEecC
Q 046223 296 VIEFSRP 302 (408)
Q Consensus 296 ~v~~a~~ 302 (408)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 38
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=130.00 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhC--CceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMN--GQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v~~a~~~~ 304 (408)
...+|||+|||+++|+++|+++|++||.|.+|+.. ..+|||||+|.+.++|++|++.|+ +..|.|+.|+|+|++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 45899999999999999999999999999999644 358999999999999999999986 479999999999998765
Q ss_pred CC
Q 046223 305 HS 306 (408)
Q Consensus 305 ~~ 306 (408)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 39
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.5e-17 Score=128.31 Aligned_cols=81 Identities=28% Similarity=0.497 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
....++|||+|||.++++++|+++|++||.|..|+ ..+.++|||||+|.+.++|++|++.|||..|.|+.|+|+|+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 34568999999999999999999999999998883 4455789999999999999999999999999999999999987
Q ss_pred CCC
Q 046223 303 GGH 305 (408)
Q Consensus 303 ~~~ 305 (408)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 40
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=125.31 Aligned_cols=77 Identities=22% Similarity=0.440 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+..+|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..++|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 358999999999999999999999999999883 366789999999999999999999999999999999999997
Q ss_pred CC
Q 046223 302 PG 303 (408)
Q Consensus 302 ~~ 303 (408)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 41
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6e-17 Score=126.79 Aligned_cols=80 Identities=30% Similarity=0.402 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3468999999999999999999999999999984 26778899999999999999999999999999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88754
No 42
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2e-17 Score=123.94 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=68.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+..|||+||++.+|+++|+++|.+||+|.+++.. .++|||||+|.+.++|.+|++.|||..++|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4789999999999999999999999999999643 589999999999999999999999999999999999984
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.8e-17 Score=127.62 Aligned_cols=81 Identities=26% Similarity=0.470 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..|+ .++..+|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 3468999999999999999999999999999883 34668999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877643
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=4.3e-17 Score=123.22 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
.+|||+|||.++++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.|||..++|+.|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999999883 45777999999999999999999999999999999999999875
Q ss_pred C
Q 046223 304 G 304 (408)
Q Consensus 304 ~ 304 (408)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.71 E-value=5e-17 Score=126.54 Aligned_cols=77 Identities=21% Similarity=0.375 Sum_probs=71.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
+++|||+||+.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..++|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 48999999999999999999999999999983 3467799999999999999999999999999999999999987
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 46
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.71 E-value=7.5e-17 Score=129.91 Aligned_cols=81 Identities=23% Similarity=0.425 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+||+.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999883 3677889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 046223 300 SRPGGH 305 (408)
Q Consensus 300 a~~~~~ 305 (408)
++++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987654
No 47
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=131.11 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
.+.++|||+||++++||++|+++|++||.|.+|++.+ +++|||||+|.+.++|++|++.|||..|. ||. |+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~--gr~--i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM--GNI--IH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--CE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC--CeE--EE
Confidence 4678999999999999999999999999999999875 46899999999999999999999999876 774 44
Q ss_pred cccc
Q 046223 155 NPYS 158 (408)
Q Consensus 155 ~~~s 158 (408)
+.++
T Consensus 80 V~~a 83 (110)
T 3s8s_A 80 AQLD 83 (110)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 4443
No 48
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=126.92 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
....++++|||+|||+++||++|+++|++||.|..|.+.+ .+|||||+|.+.++|++|++.|++..+.+.|| .+++.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--~l~V~ 86 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-GKNQAFLELATEEAAITMVNYYSAVTPHLRNQ--PIYIQ 86 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCEETTE--ECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCc--EEEEE
Confidence 3445789999999999999999999999999999998875 59999999999999999999887554445577 46666
Q ss_pred ccCc
Q 046223 157 YSSG 160 (408)
Q Consensus 157 ~s~~ 160 (408)
|+..
T Consensus 87 ~a~~ 90 (101)
T 2cq1_A 87 YSNH 90 (101)
T ss_dssp ECSC
T ss_pred EcCc
Confidence 6653
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.6e-17 Score=123.65 Aligned_cols=75 Identities=27% Similarity=0.501 Sum_probs=69.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+|||.++++++|+++|++||.|..+. .++..+|||||+|.+.++|++|++.|||..++|+.|+|+|++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 469999999999999999999999999999983 456679999999999999999999999999999999999985
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=128.80 Aligned_cols=82 Identities=28% Similarity=0.441 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||.++++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34569999999999999999999999999999883 3467899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++.....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876543
No 51
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=131.97 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=68.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...++++|||+|||+++||++|+++|++||.|.+|++.+ .+|||||+|.+.++|++|++.|++..+.+.|| .|++.|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr--~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--PIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB--CCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCe--EEEEEE
Confidence 445689999999999999999999999999999999885 59999999999999999999998654444577 466666
Q ss_pred cCcc
Q 046223 158 SSGL 161 (408)
Q Consensus 158 s~~~ 161 (408)
+..+
T Consensus 104 a~~k 107 (119)
T 2ad9_A 104 SNHK 107 (119)
T ss_dssp CSSS
T ss_pred ccCC
Confidence 6533
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.5e-17 Score=126.50 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....++|||+|||.++++++|+++|++||.|..++ .++..+|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34568999999999999999999999999999883 35677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87653
No 53
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.1e-17 Score=134.72 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=66.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
.++++|||+|||.++|+++|+++|+.||.|..|.+.+ .++|||||+|.+.++|++|++.|||..|. |+ .+++.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS--NR--YLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS--SC--BCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC--Ce--EEEEEE
Confidence 3578999999999999999999999999999999875 45899999999999999999999998875 66 355544
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 54
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=3.9e-17 Score=140.34 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3468999999999999999999999999999883 46667999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
+++..+
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 877654
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=128.02 Aligned_cols=82 Identities=28% Similarity=0.448 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||.++++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34569999999999999999999999999999883 3667899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9876543
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=127.77 Aligned_cols=81 Identities=31% Similarity=0.398 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||..+++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34569999999999999999999999999999883 3667889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 046223 300 SRPGGH 305 (408)
Q Consensus 300 a~~~~~ 305 (408)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987654
No 57
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=130.16 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=68.2
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 79 TGPTRTLVLSYVPG-DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 79 ~~~~rtlfV~nLp~-~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
..++++|||+|||+ ++||++|+++|++||.|.+|++++ .+|||||+|.+.++|++|++.||+....+.|| .|+|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGK--PVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTE--ECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCc--EEEEEE
Confidence 44789999999999 999999999999999999999884 68999999999999999999999876555688 456666
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 89 a~ 90 (102)
T 1x4d_A 89 SQ 90 (102)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 58
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=126.01 Aligned_cols=80 Identities=26% Similarity=0.416 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++ |||..|+|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 4469999999999999999999999999999883 356789999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 59
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=125.34 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....++|||+|||.++++++|+++|++||.|..|+ ....++|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34569999999999999999999999999999883 223468999999999999999999999999999999999998
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
++...
T Consensus 92 ~~~~~ 96 (103)
T 2cq3_A 92 ARVMT 96 (103)
T ss_dssp SSCCC
T ss_pred cCCCC
Confidence 76543
No 60
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.3e-16 Score=125.79 Aligned_cols=80 Identities=30% Similarity=0.559 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
...++|||+||+.++++++|+++|++||.|..|.. .++||||+|.+.++|++|++.|||..|.|+.|+|++++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 34589999999999999999999999999999864 377999999999999999999999999999999999988765
Q ss_pred CCC
Q 046223 306 SKK 308 (408)
Q Consensus 306 ~~~ 308 (408)
+..
T Consensus 86 ~~~ 88 (103)
T 2dgu_A 86 KRK 88 (103)
T ss_dssp CCC
T ss_pred cch
Confidence 443
No 61
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=3.2e-17 Score=128.86 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=65.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
++|||+|||.++|+++|+++|++||+|..|.+.+.++|||||+|.+.++|++|++.|||..|. |+. +++.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVIC--GSR--VRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSS--SCC--CEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeEC--CcE--EEEEEcc
Confidence 489999999999999999999999999999998767999999999999999999999998876 663 5555543
No 62
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.8e-17 Score=129.69 Aligned_cols=77 Identities=21% Similarity=0.142 Sum_probs=69.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCC-Cceeecc-CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFG-PVKELRE-TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G-~v~~v~~-~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
..+|||+|||+++++++|+++|++|| .|..+.. ...++|||||+|.+.++|++|++.|||..|+|+.|+|++++...
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 58999999999999999999999999 8988854 35689999999999999999999999999999999999987543
No 63
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.7e-17 Score=121.97 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.|||..+. ||. |++.++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~--gr~--I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLA--NTT--IFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEET--TEE--EEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEEC--CcE--EEEEEC
Confidence 467899999999999999999999999999999874 8999999999999999999999998876 774 555443
No 64
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.3e-17 Score=125.28 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+||+.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 358999999999999999999999999999883 356789999999999999999999999999999999999998
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 65
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=124.90 Aligned_cols=80 Identities=15% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHh--CCceeCCeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEM--NGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l--~g~~~~g~~l~v~~a~~~ 303 (408)
.+.++|||+|||+++++++|+++|++||.|.+|... ..+|||||+|.+.++|++|++.| ++..+.|+.|+|.|++.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 346899999999999999999999999999998543 35999999999999999999987 477899999999999876
Q ss_pred CCC
Q 046223 304 GHS 306 (408)
Q Consensus 304 ~~~ 306 (408)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 644
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.8e-17 Score=125.35 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-c-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-R-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
..++|||+|||.++++++|+++|++||.|..+ + .++.++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35899999999999999999999999999776 3 45667899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 877644
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.4e-17 Score=127.36 Aligned_cols=81 Identities=22% Similarity=0.484 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||.++++++|+++|++||.|..|+ .++..+|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999883 35567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 877643
No 68
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=127.48 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCc--eeCCeEEEEEEecC
Q 046223 226 NNQGTIVVFNLDS-GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQ--EIYGKHVVIEFSRP 302 (408)
Q Consensus 226 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~ 302 (408)
.+.++|||+|||+ ++|++||+++|++||.|.+|+.. ..+|||||+|++.++|.+|++.||+. .|.|+.|.|.||+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3568999999999 99999999999999999999644 46799999999999999999999864 59999999999986
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 69
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.2e-17 Score=127.35 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=74.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....++|||+|||.++++++|+++|++||.|..|+ .++..+|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 34568999999999999999999999999999883 256789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87643
No 70
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=5.5e-17 Score=129.15 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
.....++|||+||+.++++++|+++|++||.|..+... +|||||+|.+.++|++|++.|||..++|+.|+|+|++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34567999999999999999999999999999998654 899999999999999999999999999999999999876
Q ss_pred CCC
Q 046223 304 GHS 306 (408)
Q Consensus 304 ~~~ 306 (408)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 71
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=122.35 Aligned_cols=78 Identities=23% Similarity=0.413 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
....++|||+|||.++++++|+++|++||.|..+... ++||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456999999999999999999999999999998643 6699999999999999999999999999999999998765
Q ss_pred C
Q 046223 305 H 305 (408)
Q Consensus 305 ~ 305 (408)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 72
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.6e-17 Score=128.62 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
.....++|||+||+.++++++|+++|++||.|..++ ..+.++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345579999999999999999999999999998883 23457899999999999999999999999999999999999
Q ss_pred cCC
Q 046223 301 RPG 303 (408)
Q Consensus 301 ~~~ 303 (408)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 765
No 73
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=124.22 Aligned_cols=76 Identities=24% Similarity=0.424 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||.++++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3468999999999999999999999999999883 34667899999999999999999999999999999999998
Q ss_pred c
Q 046223 301 R 301 (408)
Q Consensus 301 ~ 301 (408)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=126.53 Aligned_cols=81 Identities=25% Similarity=0.496 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeecc------CCCCccEEEEEECCHHHHHHHHHHh-CCceeCCeEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE------TPLKKHQRFIEFYDVRDAAKALKEM-NGQEIYGKHVVI 297 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~------~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l~v 297 (408)
....++|||+|||..+++++|+++|++||.|..|+. ++..+|||||+|.+.++|++|++.| ||..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 445699999999999999999999999999999842 5567999999999999999999999 999999999999
Q ss_pred EEecCCCC
Q 046223 298 EFSRPGGH 305 (408)
Q Consensus 298 ~~a~~~~~ 305 (408)
+|++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 75
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=124.15 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..+. .++..+|||||+|.+.++|++|++.|||..++|+.|+|+|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4468999999999999999999999999999883 34677899999999999999999999999999999999998
Q ss_pred cC
Q 046223 301 RP 302 (408)
Q Consensus 301 ~~ 302 (408)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=126.39 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
...++|||+||+.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 3468999999999999999999999999998882 346678999999999999999999999999999999999997
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 77
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=9.5e-17 Score=122.67 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=70.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeecc-----C-CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE-----T-PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~-----~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
.++|||+|||.++++++|+++|++||.|..+.. + +..+|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 489999999999999999999999999998832 1 2278999999999999999999999999999999999997
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 78
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=9.1e-17 Score=128.34 Aligned_cols=80 Identities=20% Similarity=0.377 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999999883 35677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87654
No 79
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=127.23 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhC------CceeCCeE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMN------GQEIYGKH 294 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~------g~~~~g~~ 294 (408)
...++|||+|||.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4468999999999999999999999999999883 346789999999999999999999999 99999999
Q ss_pred EEEEEecCCCCC
Q 046223 295 VVIEFSRPGGHS 306 (408)
Q Consensus 295 l~v~~a~~~~~~ 306 (408)
|+|++++++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999877544
No 80
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=132.63 Aligned_cols=84 Identities=21% Similarity=0.474 Sum_probs=75.5
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEE
Q 046223 223 PDGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVI 297 (408)
Q Consensus 223 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v 297 (408)
......++|||+||+.++++++|+++|+.||.|.+|+ .++.++|||||+|.+.++|.+|++.|||..|+|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445679999999999999999999999999999883 34667999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q 046223 298 EFSRPGGHS 306 (408)
Q Consensus 298 ~~a~~~~~~ 306 (408)
++++++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887644
No 81
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=126.06 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC-----eEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG-----KHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~l~v~~a 300 (408)
....+|||+|||+++++++|+++|++||.|..|..... |||||+|.+.++|++|++.|||..|.| +.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 34689999999999999999999999999999864332 999999999999999999999999999 99999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88653
No 82
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=124.63 Aligned_cols=80 Identities=31% Similarity=0.453 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
...++|||+|||.++++++|+++|++||.|.-+. .++..+|||||+|.+.++|++|++.|||..|.|+.|+|++++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 4469999999999999999999999999985543 466789999999999999999999999999999999999998765
Q ss_pred C
Q 046223 305 H 305 (408)
Q Consensus 305 ~ 305 (408)
.
T Consensus 93 ~ 93 (101)
T 2fc9_A 93 S 93 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=123.19 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
...++|||+|||.++++++|+++|++||.|..++.. +|||||+|.+.++|++|++.|||..++|+.|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 346999999999999999999999999999998644 89999999999999999999999999999999999987654
No 84
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-17 Score=126.32 Aligned_cols=81 Identities=27% Similarity=0.405 Sum_probs=74.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
...++|||+|||..+++++|+++|+.||.|..+..++.++|||||+|.+.++|++|++.|||..++|+.|+|++++++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 34689999999999999999999999999988866778899999999999999999999999999999999999987654
Q ss_pred C
Q 046223 306 S 306 (408)
Q Consensus 306 ~ 306 (408)
+
T Consensus 94 ~ 94 (96)
T 1fjc_A 94 T 94 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 85
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=127.39 Aligned_cols=82 Identities=22% Similarity=0.358 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCce--------ee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVK--------EL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY 291 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 291 (408)
....++|||+|||.++++++|+++|++||.|. .| +.++.++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34569999999999999999999999999998 35 245678999999999999999999999999999
Q ss_pred CeEEEEEEecCCCCC
Q 046223 292 GKHVVIEFSRPGGHS 306 (408)
Q Consensus 292 g~~l~v~~a~~~~~~ 306 (408)
|+.|+|++++++...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999876543
No 86
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=122.22 Aligned_cols=77 Identities=30% Similarity=0.451 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
...++|||+|||.++++++|+++|++||.|..++.. ++||||+|.+.++|++|++.|||..++|+.|+|+++++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 446899999999999999999999999999998643 66999999999999999999999999999999999987653
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.6e-17 Score=125.38 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeecc--------CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE--------TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~--------~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
+.++|||+|||.++++++|+++|++||.|..|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3589999999999999999999999999998832 23678999999999999999999999999999999999
Q ss_pred EecCCCC
Q 046223 299 FSRPGGH 305 (408)
Q Consensus 299 ~a~~~~~ 305 (408)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9987653
No 88
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=8.2e-17 Score=124.20 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
..++|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..++|+.|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 458999999999999999999999999999883 45678999999999999999999999999999999999999876
Q ss_pred CC
Q 046223 304 GH 305 (408)
Q Consensus 304 ~~ 305 (408)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 89
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1.6e-16 Score=125.73 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCC---eEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG---KHVVIE 298 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g---~~l~v~ 298 (408)
...++|||+|||..+++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 3469999999999999999999999999999883 356678999999999999999999999999998 999999
Q ss_pred EecCCCCC
Q 046223 299 FSRPGGHS 306 (408)
Q Consensus 299 ~a~~~~~~ 306 (408)
+++++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99887654
No 90
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=122.76 Aligned_cols=77 Identities=22% Similarity=0.416 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcC--CCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAF--GPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
...++|||+|||..+++++|+++|++| |.|..+. ..+|||||+|.+.++|++|++.|||..|.|+.|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK---KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEE---ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE---EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 456899999999999999999999999 8998886 35889999999999999999999999999999999999876
Q ss_pred CC
Q 046223 304 GH 305 (408)
Q Consensus 304 ~~ 305 (408)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 91
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=130.34 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=68.6
Q ss_pred CCCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPGD-VSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~-vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...++++|||+|||++ +||++|+++|++||+|.+|++. +++|||||+|.+.++|++|++.|++..+.+.|| .|++.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr--~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR--CVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS--CCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEE
Confidence 3557899999999998 9999999999999999999987 479999999999999999999998766555678 46666
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 98 ~a~ 100 (112)
T 1x4f_A 98 LSE 100 (112)
T ss_dssp EEC
T ss_pred ECc
Confidence 654
No 92
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.4e-16 Score=125.62 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCc--eeCCeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQ--EIYGKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~ 303 (408)
.+.++|||+||++++++++|+++|++||.|..|... ..+|||||+|.+.++|.+|++.|++. .+.|+.|+|+|++.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 346899999999999999999999999999998643 35899999999999999999999764 599999999999876
Q ss_pred CCC
Q 046223 304 GHS 306 (408)
Q Consensus 304 ~~~ 306 (408)
..+
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 93
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.8e-16 Score=123.65 Aligned_cols=77 Identities=22% Similarity=0.395 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 225 GNNQGTIVVFNLDS-GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 225 ~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
....++|||+||+. ++++++|+++|++||.|..++. .+|||||+|.+.++|.+|++.|||..++|+.|+|++++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34579999999998 9999999999999999999874 4899999999999999999999999999999999999765
Q ss_pred C
Q 046223 304 G 304 (408)
Q Consensus 304 ~ 304 (408)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=123.17 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCcHHHHH----HHHhcCCCceeeccC--CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 227 NQGTIVVFNLDSGVSSSTLK----EIFQAFGPVKELRET--PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~~~--~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
+..+|||+|||.++++++|+ ++|++||.|.+|+.. ...+|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45899999999999999999 999999999998422 122899999999999999999999999999999999999
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
++..
T Consensus 88 ~~~~ 91 (96)
T 2dgx_A 88 TGAS 91 (96)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7764
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=127.84 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=73.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
.....++|||+||+..+++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345569999999999999999999999999999883 456778999999999999999999999999999999999
Q ss_pred EecCCC
Q 046223 299 FSRPGG 304 (408)
Q Consensus 299 ~a~~~~ 304 (408)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=123.90 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+|||.++++++|+++|++||.|..+ +.++.++|||||+|.+.++|++|++.|||..|+|+.|+|++++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 45899999999999999999999999998755 3466789999999999999999999999999999999999987
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
.+.
T Consensus 94 ~~~ 96 (98)
T 2cqp_A 94 GPS 96 (98)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 97
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1.1e-16 Score=130.42 Aligned_cols=84 Identities=26% Similarity=0.340 Sum_probs=73.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccE-EEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQ-RFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 304 (408)
-..|||+||++.+|+++|+++|++||.|.+|+...+.+|| |||+|.+.++|++|++.|||..|.| +.|+|+|+++..
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 3678899999999999999999999999999644456788 9999999999999999999999988 999999999876
Q ss_pred CCCCccc
Q 046223 305 HSKKFFY 311 (408)
Q Consensus 305 ~~~~~~~ 311 (408)
...+..+
T Consensus 108 l~v~~n~ 114 (130)
T 3zzy_A 108 LNVKYNN 114 (130)
T ss_dssp CCCCCCS
T ss_pred eeEEecC
Confidence 5544433
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=1.7e-16 Score=125.87 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCcee---CCeEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEI---YGKHVV 296 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~---~g~~l~ 296 (408)
....++|||+|||.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..+ .|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34468999999999999999999999999999983 3467899999999999999999999999988 899999
Q ss_pred EEEecCCCC
Q 046223 297 IEFSRPGGH 305 (408)
Q Consensus 297 v~~a~~~~~ 305 (408)
|++++++..
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 99
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=127.47 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+||+..+++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 3458999999999999999999999999999983 34677999999999999999999999999999999999999
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 100
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=124.52 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
...++|||+||+.++++++|+++|++||.|......+.++|||||+|.+.++|++|++.|||..|+|+.|+|++++++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 4468999999999999999999999999986223355789999999999999999999999999999999999998764
No 101
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=122.98 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=69.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCC-ceeeccCCCCccEEEEEECCHHHHHHHHHHhCC-ceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGP-VKELRETPLKKHQRFIEFYDVRDAAKALKEMNG-QEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g-~~~~g~~l~v~~a~~~~ 304 (408)
..++|||+|||.++++++|+++|++||. |..+.. .++|||||+|.+.++|++|++.||| ..++|+.|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4589999999999999999999999999 555433 4689999999999999999999999 99999999999998765
Q ss_pred CC
Q 046223 305 HS 306 (408)
Q Consensus 305 ~~ 306 (408)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=128.60 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNG--QEIYGKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~~ 303 (408)
.+.++|||+|||+++++++|+++|++||.|.+|+.. ..+|||||+|++.++|++|++.|++ ..|.|+.|+|.|++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 346899999999999999999999999999998643 3589999999999999999999984 6899999999999876
Q ss_pred CCC
Q 046223 304 GHS 306 (408)
Q Consensus 304 ~~~ 306 (408)
..+
T Consensus 108 ~~~ 110 (119)
T 2ad9_A 108 ELK 110 (119)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 103
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=124.16 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC--CeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY--GKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~--g~~l~v~~a~~~ 303 (408)
...++|||+|||.++++++|+++|++||.|..++.. ..+|||||+|.+.++|++|++.|||..+. |+.|+|+|++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 345899999999999999999999999999999644 34899999999999999999999999999 999999999876
Q ss_pred CC
Q 046223 304 GH 305 (408)
Q Consensus 304 ~~ 305 (408)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 104
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=2.1e-17 Score=127.06 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCC--Cceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFG--PVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
.+|||+||++++++++|+++|++|| .|.+++ .++.++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 888873 477889999999999999999999999999999999999998
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=9.6e-17 Score=126.14 Aligned_cols=76 Identities=17% Similarity=0.255 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
..++|||+||+.++++++|+++|++||.|.+++.. .++|||||+|.+.++|.+|++.|||..++|+.|+|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35899999999999999999999999999999644 67999999999999999999999999999999999999764
No 106
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=123.53 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..++|||+|||..+++++|+++|++||.|..|+ ..+.++|||||+|.+.++|++|++.|||..++|+.|+|++++.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 458999999999999999999999999999883 3466789999999999999999999999999999999999864
No 107
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=124.39 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCcee--------e-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE--------L-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG 292 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 292 (408)
....+|||+||+.++++++|+++|++||.|.. + +.++.++|||||+|.+.++|++|++.|||..++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34699999999999999999999999999988 6 2457789999999999999999999999999999
Q ss_pred eEEEEEEec
Q 046223 293 KHVVIEFSR 301 (408)
Q Consensus 293 ~~l~v~~a~ 301 (408)
+.|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 108
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=125.19 Aligned_cols=80 Identities=10% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCC--eEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcc--ccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGE--VRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQH--MQLQQ 148 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~--V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~--i~~~g 148 (408)
....-.||||+|||+++||++|+++|++||. |.+|++.+ +++|||||+|.+.++|++|++.|||.. +.++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3445679999999999999999999999995 56788865 569999999999999999999999975 33457
Q ss_pred cccceeccccC
Q 046223 149 QSYGLKNPYSS 159 (408)
Q Consensus 149 r~l~~~~~~s~ 159 (408)
| .+++.|++
T Consensus 85 r--~i~V~~Ak 93 (95)
T 2lkz_A 85 K--TIGVDFAK 93 (95)
T ss_dssp E--EEEEEECC
T ss_pred E--EEEEEEcc
Confidence 8 45665543
No 109
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=125.63 Aligned_cols=78 Identities=24% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
..++|||+||+..+++++|+++|++||.|..|+.. ..+|||||+|.+.++|++|++.|||..|+|+.|+|.|++++..
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 35899999999999999999999999999999644 3389999999999999999999999999999999999987654
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=130.71 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCcHHHHH----HHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLK----EIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
...++|||+||++.+++++|+ ++|++||.|.+|. .++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346899999999999999876 7999999998883 3567899999999999999999999999999999999999
Q ss_pred ecCCCC
Q 046223 300 SRPGGH 305 (408)
Q Consensus 300 a~~~~~ 305 (408)
++.+..
T Consensus 107 a~~~~~ 112 (127)
T 2a3j_A 107 SETPQS 112 (127)
T ss_dssp CCCCCH
T ss_pred ccCcch
Confidence 987653
No 111
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=123.62 Aligned_cols=82 Identities=28% Similarity=0.407 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
....++|||+||+.++++++|+++|+.|+.|..+. .++.++|||||+|.+.++|++|++.|||..|.|+.|+|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 34569999999999999999999999998776663 4677899999999999999999999999999999999999988
Q ss_pred CCCC
Q 046223 303 GGHS 306 (408)
Q Consensus 303 ~~~~ 306 (408)
+...
T Consensus 92 ~~~~ 95 (102)
T 2fc8_A 92 KGEG 95 (102)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7643
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=125.45 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=71.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGHS 306 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 306 (408)
++|||+|||.++++++|+++|++||.|..+.....++|||||+|.+.++|++|++.|||..++|+.|+|++++++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999999998543337999999999999999999999999999999999999887643
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.3e-16 Score=129.05 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=70.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+||+.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44568999999999999999999999999999883 3567799999999999999999999999999999999999
Q ss_pred ec
Q 046223 300 SR 301 (408)
Q Consensus 300 a~ 301 (408)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 114
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=2e-16 Score=128.82 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccE-EEEEECCHHHHHHHHHHhcCccccccccccceeccccCc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGI-VTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSG 160 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~-afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~ 160 (408)
-..|||+||++.+||++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|||..|.+.++ .|++.|++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~--~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC--TLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE--EEEEEECSC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc--EEEEEecCC
Confidence 3467899999999999999999999999999998878898 9999999999999999999999985435 578888875
Q ss_pred cc
Q 046223 161 LM 162 (408)
Q Consensus 161 ~s 162 (408)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 54
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.2e-16 Score=125.16 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|++ .|.|+.|+|++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44569999999999999999999999999999883 3567899999999999999999999998 89999999999
Q ss_pred ecCCC
Q 046223 300 SRPGG 304 (408)
Q Consensus 300 a~~~~ 304 (408)
++...
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 116
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=123.96 Aligned_cols=79 Identities=20% Similarity=0.299 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeecc-----C-CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE-----T-PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~-----~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
...++|||+|||.++++++|+++|+.|| |..|+. + +.++|||||+|.+.++|++|+ .|||..|+|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3458999999999999999999999999 988832 2 678999999999999999999 8999999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887644
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=127.20 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=69.6
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 75 PPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 75 p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
+.......++|||+|||.++|+++|+++|++||+|..|++.+ .++|||||+|.+.++|++|++.|||..|. |+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~-- 97 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE--GR-- 97 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET--TE--
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC--CE--
Confidence 345566789999999999999999999999999999999875 35899999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.+++.++.
T Consensus 98 ~l~V~~a~ 105 (109)
T 2err_A 98 KIEVNNAT 105 (109)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 35555544
No 118
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=125.79 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhc-CCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCce-eCCeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQA-FGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQE-IYGKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~-~~g~~l~v~~ 299 (408)
....+|||+||+.++++++|+++|+. ||.|..|+ .++.++|||||+|.+.++|.+|++.|||.. ++|+.|+|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 44689999999999999999999999 99999883 267789999999999999999999999999 9999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++++..+
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9876644
No 119
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5e-16 Score=122.47 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=69.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
......++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.|||..|. |+ .|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL--GK--EV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET--TE--EE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC--CC--eE
Confidence 4556789999999999999999999999999999999886 35899999999999999999999998876 66 45
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 86 ~V~~a~ 91 (103)
T 2cqi_A 86 KVNWAT 91 (103)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 565554
No 120
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.4e-16 Score=130.45 Aligned_cols=81 Identities=17% Similarity=0.394 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+||+..+|+++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 3468999999999999999999999999999883 36677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
+++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876544
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=4.9e-17 Score=127.64 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=70.8
Q ss_pred CceEEEcCCCC------CCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCC-eEE
Q 046223 228 QGTIVVFNLDS------GVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG-KHV 295 (408)
Q Consensus 228 ~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-~~l 295 (408)
.++|||+|||. ++++++|+++|++||.|.+|+ .++.++|||||+|.+.++|++|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58999999999 999999999999999999983 447889999999999999999999999999999 999
Q ss_pred EEEEecCC
Q 046223 296 VIEFSRPG 303 (408)
Q Consensus 296 ~v~~a~~~ 303 (408)
+|.++++.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999764
No 122
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-17 Score=126.20 Aligned_cols=74 Identities=23% Similarity=0.360 Sum_probs=63.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhc-Ccccccccccccee
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFG-EVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIR-EQHMQLQQQSYGLK 154 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G-~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~ln-g~~i~~~gr~l~~~ 154 (408)
+++|||+|||.++||++|+++|++|| +|.+|++++ .++|||||+|.+.++|++|++.++ +..|. || .++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~--gr--~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL--GQ--KVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET--TE--EEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC--CE--EEE
Confidence 57999999999999999999999999 899998875 469999999999999999999875 43443 67 466
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.|+.
T Consensus 77 V~~a~ 81 (91)
T 2lxi_A 77 MHYSD 81 (91)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 66765
No 123
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=3.1e-16 Score=125.25 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCC-CcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 226 NNQGTIVVFNLDSG-VSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 226 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
...++|||+||+.. +++++|+++|++||.|..|.. .+|||||+|.+.++|++|++.|||..|+|+.|+|++++...
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 34589999999999 999999999999999999875 78999999999999999999999999999999999998654
Q ss_pred C
Q 046223 305 H 305 (408)
Q Consensus 305 ~ 305 (408)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 124
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.1e-16 Score=123.77 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.. +++|||||+|.+.++|++|++.||+..|. ++ .|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD--GY--RLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET--TE--ECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC--Ce--EEE
Confidence 4455789999999999999999999999999999999875 45899999999999999999999998876 66 455
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.|+.
T Consensus 93 V~~a~ 97 (109)
T 1x4a_A 93 VEFPR 97 (109)
T ss_dssp EECCC
T ss_pred EEEcc
Confidence 55554
No 125
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=122.85 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG--------VQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~--------v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
..+..+|||+|||.++|+++|+++|++||.|.. |++.. +++|||||+|.+.++|++|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345789999999999999999999999999999 88875 34899999999999999999999998876
Q ss_pred ccccccceeccc
Q 046223 146 LQQQSYGLKNPY 157 (408)
Q Consensus 146 ~~gr~l~~~~~~ 157 (408)
|+. +++.+
T Consensus 90 --g~~--l~V~~ 97 (99)
T 2la6_A 90 --GNP--IKVSF 97 (99)
T ss_dssp --SSB--CEEEE
T ss_pred --CcE--EEEEe
Confidence 663 44433
No 126
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=3.4e-16 Score=124.27 Aligned_cols=76 Identities=30% Similarity=0.473 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
...++|||+||+..+++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4569999999999999999999999999998882 366779999999999999999999999999999999999985
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=135.50 Aligned_cols=76 Identities=5% Similarity=0.061 Sum_probs=64.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFG--EVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G--~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...++|||+|||+++||++|+++|+.|| .|.+|+++. +++|||||+|.+.++|++||+.|||..|. ||.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~--Gr~-- 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN--GEK-- 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET--TEE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CeE--
Confidence 4578999999999999999999999999 999999875 45899999999999999999999998876 774
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|+|.++.
T Consensus 129 l~V~~a~ 135 (156)
T 3n9u_C 129 VDVRPAT 135 (156)
T ss_dssp CEEEECC
T ss_pred eEEEEcC
Confidence 5554544
No 128
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=125.79 Aligned_cols=82 Identities=23% Similarity=0.284 Sum_probs=70.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 224 DGNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 224 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
.....++|||+||+.++++++|+++|+.||.|..|+ .++.++|||||+|.+.++|++|++.+ +..++|+.|+|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 345579999999999999999999999999999983 35778999999999999999999976 599999999999
Q ss_pred EecCCCCC
Q 046223 299 FSRPGGHS 306 (408)
Q Consensus 299 ~a~~~~~~ 306 (408)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877644
No 129
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.1e-16 Score=122.41 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||.++++++|+++|++|| |..|+ .++.++|||||+|.+.++|++|+ .|||..|.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3469999999999999999999999997 88883 35678999999999999999999 89999999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 130
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=123.92 Aligned_cols=78 Identities=19% Similarity=0.367 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCce-eec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE----EE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVK-ELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH----VV 296 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~-~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~----l~ 296 (408)
..++|||+|||.++++++|+++|++||.|. .++ .++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 459999999999999999999999999998 772 36678899999999999999999999999999999 99
Q ss_pred EEEecCCC
Q 046223 297 IEFSRPGG 304 (408)
Q Consensus 297 v~~a~~~~ 304 (408)
|+|+++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998764
No 131
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=5.9e-16 Score=125.19 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||+|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG--TKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--CEEE
Confidence 3455789999999999999999999999999999999875 44899999999999999999999998876 6643
No 132
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=119.76 Aligned_cols=75 Identities=20% Similarity=0.374 Sum_probs=69.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHh-CCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEM-NGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l-~g~~~~g~~l~v~~a~ 301 (408)
...++|||+|||..+++++|+++|++||.|..++.. .++|||||+|.+.++|++|++.| +|..++|+.|+|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 446899999999999999999999999999998643 46899999999999999999999 9999999999999985
No 133
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=2.8e-16 Score=120.30 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=70.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 38999999999999999999999999999882 36778999999999999999999 8999999999999999976
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 53
No 134
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=2.9e-16 Score=119.16 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..+.++|||+|||.++++++|+++|++||.|..|.+.+ +++|||||+|.+.++|++|++.|||..|. |+. +
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l 79 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRT--I 79 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET--TEE--C
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC--CcE--E
Confidence 34689999999999999999999999999999999865 35999999999999999999999998876 663 4
Q ss_pred eccc
Q 046223 154 KNPY 157 (408)
Q Consensus 154 ~~~~ 157 (408)
++.|
T Consensus 80 ~v~~ 83 (85)
T 3mdf_A 80 RVNL 83 (85)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 135
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=130.87 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCcee--e-----ccCCCCccEEEEEECCHHHHHHHHHHhCCc----eeCCe
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE--L-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQ----EIYGK 293 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~----~~~g~ 293 (408)
....++|||+||++++|+++|+++|++||.|.. | +.++.++|||||+|.+. +|.+|++.|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999955 4 24778899999999999 999999999999 99999
Q ss_pred EEEEEEecCCCC
Q 046223 294 HVVIEFSRPGGH 305 (408)
Q Consensus 294 ~l~v~~a~~~~~ 305 (408)
.|+|+++++...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987653
No 136
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.66 E-value=1.2e-16 Score=131.28 Aligned_cols=80 Identities=25% Similarity=0.474 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||.++++++|+++|++||.|..|+ .++..+|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999883 3567899999999999999999999999999999999999
Q ss_pred ecCCC
Q 046223 300 SRPGG 304 (408)
Q Consensus 300 a~~~~ 304 (408)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98764
No 137
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=120.95 Aligned_cols=79 Identities=16% Similarity=0.304 Sum_probs=68.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...++++|||+|||.++|+++|+++|++||.|..|.+.+ .+|||||+|.+.++|++|++.|||..|.+.++ .|++.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~--~l~V~~ 89 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDR--RLRVDF 89 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSC--BCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCc--EEEEEE
Confidence 344678999999999999999999999999999999885 48999999999999999999999988764356 355555
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 90 a~ 91 (97)
T 1why_A 90 AK 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 138
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=121.15 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++++++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~- 87 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF--GRV- 87 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET--TEE-
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC--CcE-
Confidence 3445678999999999999999999999999999999875 35899999999999999999999998876 663
Q ss_pred ceeccc
Q 046223 152 GLKNPY 157 (408)
Q Consensus 152 ~~~~~~ 157 (408)
+++.|
T Consensus 88 -l~v~~ 92 (94)
T 2e5h_A 88 -IKASI 92 (94)
T ss_dssp -EEEEE
T ss_pred -EEEEe
Confidence 45444
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=124.29 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 226 NNQGTIVVFNLDS-GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 226 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
...++|||+|||. .+++++|+++|++||.|..+.. .+|||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3469999999998 9999999999999999999874 48999999999999999999999999999999999998765
Q ss_pred CC
Q 046223 305 HS 306 (408)
Q Consensus 305 ~~ 306 (408)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 140
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=120.65 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
.++++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+. |+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~ 78 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA--GRP--MR 78 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS--SSC--CE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC--CcE--EE
Confidence 4678999999999999999999999999999999876 35899999999999999999999998876 663 55
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.++.
T Consensus 79 V~~a~ 83 (95)
T 2dnz_A 79 VGHVT 83 (95)
T ss_dssp EEESS
T ss_pred EEEcc
Confidence 55544
No 141
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.5e-16 Score=121.83 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
...++|||+|||..+++++|+++|++||.|..++.. ..+|||||+|.+.++|++|++.|||..|.|+.|+|++++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 446899999999999999999999999999998644 568999999999999999999999999999999999998754
No 142
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=124.05 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCC------cHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe-EE
Q 046223 226 NNQGTIVVFNLDSGV------SSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK-HV 295 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l 295 (408)
...++|||+|||..+ ++++|+++|++||.|..|. .++.++|||||+|.+.++|.+|++.|||..|+|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 346899999999999 8899999999999999883 4567899999999999999999999999999998 99
Q ss_pred EEEEecCC
Q 046223 296 VIEFSRPG 303 (408)
Q Consensus 296 ~v~~a~~~ 303 (408)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998654
No 143
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=2e-16 Score=123.29 Aligned_cols=80 Identities=28% Similarity=0.485 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCcHHHHH----HHHhcCCCceeecc--CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLK----EIFQAFGPVKELRE--TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~~--~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
...++|||+|||.++++++|+ ++|++||.|..+.. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446899999999999999999 99999999999842 346789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 046223 300 SRPGGH 305 (408)
Q Consensus 300 a~~~~~ 305 (408)
++++..
T Consensus 86 a~~~~~ 91 (97)
T 1nu4_A 86 AKTDSD 91 (97)
T ss_dssp CSSCCT
T ss_pred ccCCCc
Confidence 987653
No 144
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=119.95 Aligned_cols=76 Identities=13% Similarity=0.315 Sum_probs=65.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-----CccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL-----MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~-----~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
.+.++|||+|||.++|+++|+++|++||.|.+|++.+. ++|||||+|.+.++|++|++.|||..|. |+ .++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GR--QIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--TE--ECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--Ce--EEE
Confidence 35789999999999999999999999999999998763 4899999999999999999999998876 66 355
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.|+.
T Consensus 80 v~~a~ 84 (87)
T 3bs9_A 80 TNWAT 84 (87)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 55543
No 145
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-15 Score=126.93 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
......++|||+|||.++||++|+++|+.||+|.+|++.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~-- 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--NK-- 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--SC--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--Ce--
Confidence 3456789999999999999999999999999999999875 34899999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|++.++.
T Consensus 113 ~l~v~~a~ 120 (139)
T 1u6f_A 113 RLKVALAA 120 (139)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 45555544
No 146
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-15 Score=120.39 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=68.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
......++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.|||..|. |+. |
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE--GRK--I 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET--TEE--C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--CEE--E
Confidence 4456789999999999999999999999999999999986 34899999999999999999999998876 664 5
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.++.
T Consensus 86 ~v~~a~ 91 (103)
T 2cq3_A 86 EVNNAT 91 (103)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 555544
No 147
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=2.3e-16 Score=122.45 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=68.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||.++++++|+++|++||.|..+ +.++..+|||||+|.+.++|++|++.|||..|+|+.|+|+++.+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 4899999999999999999999999998765 24567899999999999999999999999999999999999864
No 148
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=122.85 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
......++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~- 86 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY--GKP- 86 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS--SCB-
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC--CeE-
Confidence 4455789999999999999999999999999999999876 35899999999999999999999998876 664
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
|++.++.
T Consensus 87 -l~v~~a~ 93 (105)
T 1x5u_A 87 -IRVNKAS 93 (105)
T ss_dssp -CEEEETT
T ss_pred -EEEEECC
Confidence 5554543
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.66 E-value=4.4e-16 Score=121.39 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPG-DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~-~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...++++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|||..+. |+. +++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~--l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNF--GKK--LILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEET--TEE--CEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEEC--CEE--EEEE
Confidence 344688999999998 9999999999999999999988 4899999999999999999999998876 663 5555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 91 ~a~ 93 (97)
T 2xnq_A 91 VSS 93 (97)
T ss_dssp ECC
T ss_pred ecC
Confidence 543
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=2.5e-16 Score=133.11 Aligned_cols=81 Identities=30% Similarity=0.382 Sum_probs=71.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeecc-CCCCccEEEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE-TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~-~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~ 304 (408)
..+|||+||++.+|+++|+++|++||.|++|+. ....+|||||+|.+.++|++|++.|||..|.| +.|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 467999999999999999999999999999953 23467899999999999999999999999965 999999999876
Q ss_pred CCCC
Q 046223 305 HSKK 308 (408)
Q Consensus 305 ~~~~ 308 (408)
...+
T Consensus 126 l~vk 129 (164)
T 1sjr_A 126 LNVK 129 (164)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5433
No 151
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=123.35 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=68.9
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
+....+.++|||+|||.++|+++|+++|++||.|..|.+.. +++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~ 84 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD--GRE 84 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT--TBC
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC--CcE
Confidence 34556789999999999999999999999999999999875 35899999999999999999999998876 663
Q ss_pred cceeccccC
Q 046223 151 YGLKNPYSS 159 (408)
Q Consensus 151 l~~~~~~s~ 159 (408)
|++.++.
T Consensus 85 --l~V~~a~ 91 (103)
T 2dnm_A 85 --LRVQVAR 91 (103)
T ss_dssp --CEEEECS
T ss_pred --EEEEECC
Confidence 5555544
No 152
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=125.94 Aligned_cols=82 Identities=30% Similarity=0.418 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCcee----e-ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE----L-RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~----v-~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||.++|+++|+++|+.||.|.. + ..++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 345689999999999999999999999999843 3 24678899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 153
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=118.15 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHh-cCccccccccccceec
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEI-REQHMQLQQQSYGLKN 155 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~l-ng~~i~~~gr~l~~~~ 155 (408)
......++|||+|||.++|+++|+++|++||.|..|++.+ ++|||||+|.+.++|++|++.| +|..+. |+. +++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~--g~~--l~v 81 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVN--GRR--LNV 81 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEET--TEE--CCE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeEC--CCE--EEE
Confidence 3445678999999999999999999999999999999885 6999999999999999999988 887766 563 444
Q ss_pred cc
Q 046223 156 PY 157 (408)
Q Consensus 156 ~~ 157 (408)
.|
T Consensus 82 ~~ 83 (85)
T 2ytc_A 82 KW 83 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 154
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=3.7e-16 Score=121.57 Aligned_cols=75 Identities=25% Similarity=0.330 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
++++|||+|||.++++++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+ .+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~--~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG--SR--FLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET--TE--ECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC--Ce--EEEE
Confidence 478999999999999999999999999999999875 34899999999999999999999998876 66 3555
Q ss_pred cccC
Q 046223 156 PYSS 159 (408)
Q Consensus 156 ~~s~ 159 (408)
.|+.
T Consensus 77 ~~a~ 80 (96)
T 2x1f_A 77 GYSS 80 (96)
T ss_dssp EECS
T ss_pred EEcC
Confidence 5554
No 155
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=4.6e-16 Score=131.46 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-CccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL-MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~-~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
.....+|||+||++++||++|+++|++||+|.+|++..+ ++|||||+|.+.++|++|++.|||..|.++++ .|++.|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~--~L~V~~ 120 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC--TLRIDF 120 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS--CEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc--EEEEEE
Confidence 344567999999999999999999999999999998754 58899999999999999999999999975556 577778
Q ss_pred cCccc
Q 046223 158 SSGLM 162 (408)
Q Consensus 158 s~~~s 162 (408)
++...
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 77543
No 156
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=5.8e-16 Score=119.38 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=67.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+ .|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~--~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS--GR--EIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT--TB--CCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--Cc--EEEE
Confidence 44678999999999999999999999999999999886 35899999999999999999999998876 66 3555
Q ss_pred cccC
Q 046223 156 PYSS 159 (408)
Q Consensus 156 ~~s~ 159 (408)
.++.
T Consensus 81 ~~a~ 84 (92)
T 2dgv_A 81 RIDR 84 (92)
T ss_dssp EECS
T ss_pred EEcC
Confidence 5544
No 157
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.65 E-value=6.1e-16 Score=124.56 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~-- 95 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG--MK-- 95 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TE--
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC--CE--
Confidence 4455678999999999999999999999999999999875 34799999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|++.|+.
T Consensus 96 ~l~V~~a~ 103 (115)
T 2cpz_A 96 RLKVQLKR 103 (115)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 45555544
No 158
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=124.02 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||..+++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++. ||..|+|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34569999999999999999999999999999882 4567889999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 046223 300 SRPGGHS 306 (408)
Q Consensus 300 a~~~~~~ 306 (408)
++++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9876543
No 159
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=121.91 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--------cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
.++++|||+|||.++|+++|+++|++||.|..|.+.+ .++|||||+|.+.++|++|++.|||..|. |+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~-- 78 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD--GH-- 78 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET--TE--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC--Ce--
Confidence 4678999999999999999999999999999998875 34799999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|++.++.
T Consensus 79 ~l~V~~a~ 86 (98)
T 2cpf_A 79 KLEVRISE 86 (98)
T ss_dssp ECEEECSS
T ss_pred EEEEEEcc
Confidence 35555544
No 160
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=7e-16 Score=122.75 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~--g~-- 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA--GR-- 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS--SS--
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--CE--
Confidence 3455678999999999999999999999999999999875 34899999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|++.++.
T Consensus 97 ~l~V~~a~ 104 (108)
T 2jrs_A 97 PMKVGHVT 104 (108)
T ss_dssp CCEEECSC
T ss_pred EEEEEEcc
Confidence 35555544
No 161
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.65 E-value=8.7e-16 Score=121.50 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=67.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccc-ccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ-QQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~-gr~l~ 152 (408)
...+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..+.+. ++ .
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~--~ 88 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS--S 88 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS--C
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc--c
Confidence 345689999999999999999999999999999999886 3489999999999999999999999887631 15 3
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.|+.
T Consensus 89 l~V~~a~ 95 (105)
T 2dnh_A 89 LVVKFAD 95 (105)
T ss_dssp CEEEESC
T ss_pred EEEEECc
Confidence 5555544
No 162
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=117.75 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=70.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....+|||+|||.++++++|+++|+.| .|..++ .++.++|||||+|.+.++|++|++ |||..|+|+.|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 446899999999999999999999999 888883 456779999999999999999999 99999999999999998
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 764
No 163
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6e-16 Score=120.00 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=67.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||.|..|.+.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~-- 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GR-- 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET--TE--
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CE--
Confidence 3445688999999999999999999999999999999875 44899999999999999999999998876 66
Q ss_pred ceecccc
Q 046223 152 GLKNPYS 158 (408)
Q Consensus 152 ~~~~~~s 158 (408)
.|++.|+
T Consensus 86 ~l~v~~a 92 (95)
T 2cqc_A 86 RIRVSGP 92 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 3555444
No 164
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=120.99 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=67.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
....+.++|||+|||.++++++|+++|++||+|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~-- 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY--GRP-- 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET--TEE--
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC--CCE--
Confidence 4455789999999999999999999999999999999886 34899999999999999999999998876 663
Q ss_pred eecccc
Q 046223 153 LKNPYS 158 (408)
Q Consensus 153 ~~~~~s 158 (408)
|++.|+
T Consensus 87 l~V~~a 92 (95)
T 2ywk_A 87 INVSGP 92 (95)
T ss_dssp CEEECC
T ss_pred EEEEEc
Confidence 455443
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=8.3e-16 Score=130.74 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+|+++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999983 35678899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 046223 301 RPGGHS 306 (408)
Q Consensus 301 ~~~~~~ 306 (408)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876544
No 166
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-16 Score=123.15 Aligned_cols=78 Identities=14% Similarity=0.315 Sum_probs=67.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||.|..|.+.+ .++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~- 94 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQP- 94 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS--SSB-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC--CcE-
Confidence 3455678999999999999999999999999999999875 34899999999999999999999998876 664
Q ss_pred ceecccc
Q 046223 152 GLKNPYS 158 (408)
Q Consensus 152 ~~~~~~s 158 (408)
|++.|+
T Consensus 95 -l~V~~a 100 (106)
T 1p27_B 95 -ISVDWC 100 (106)
T ss_dssp -CEEEES
T ss_pred -EEEEee
Confidence 455444
No 167
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=125.41 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=67.0
Q ss_pred CCCCCEEEE--cCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccc-cccccccceec
Q 046223 79 TGPTRTLVL--SYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHM-QLQQQSYGLKN 155 (408)
Q Consensus 79 ~~~~rtlfV--~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i-~~~gr~l~~~~ 155 (408)
..++++||| +||++++||++|+++|++||+|..|.+. ..+|||||+|.+.++|++|++.|||+.| ...+....+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 446889999 7799999999999999999999999887 4699999999999999999999999987 32222335666
Q ss_pred cccC
Q 046223 156 PYSS 159 (408)
Q Consensus 156 ~~s~ 159 (408)
.|+.
T Consensus 101 ~~a~ 104 (114)
T 2cq2_A 101 NFVE 104 (114)
T ss_dssp EEES
T ss_pred Eecc
Confidence 6654
No 168
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.5e-16 Score=121.26 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..++++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+ .+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l 80 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--GR--ML 80 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS--SC--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC--Cc--EE
Confidence 45689999999999999999999999999999999875 35899999999999999999999998876 66 35
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.++.
T Consensus 81 ~V~~a~ 86 (99)
T 1whw_A 81 HVLPST 86 (99)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 555544
No 169
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=127.25 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVR----RDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~----~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
..++++|||+||++++++++|+ ++|++||.|.+|.+.+ +++|||||+|.+.++|++|++.|||..|. || .
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--gr--~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ--GN--P 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT--TS--C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC--CC--E
Confidence 3457899999999999999876 7999999999998865 67999999999999999999999998876 67 4
Q ss_pred eeccccCc
Q 046223 153 LKNPYSSG 160 (408)
Q Consensus 153 ~~~~~s~~ 160 (408)
|+|.|+..
T Consensus 102 l~V~~a~~ 109 (127)
T 2a3j_A 102 LVITFSET 109 (127)
T ss_dssp CEEEECCC
T ss_pred EEEEEccC
Confidence 66666653
No 170
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=120.02 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.. +++|||||+|.+.++|++|++.|||..|. |+ .
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~--~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK--EN--I 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS--SC--E
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC--CE--E
Confidence 3445678999999999999999999999999999999876 34799999999999999999999998876 66 3
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.|+.
T Consensus 88 l~v~~a~ 94 (100)
T 2do4_A 88 IKVAISN 94 (100)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 5555544
No 171
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=125.96 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCcHHHHH---HHHhcCCCceeecc--------CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLK---EIFQAFGPVKELRE--------TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHV 295 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~---~~F~~~G~v~~v~~--------~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l 295 (408)
..++|||+|||.++++++|+ ++|++||.|..+.. .+.++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35899999999999999999 99999999999831 12456999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 046223 296 VIEFSRPGG 304 (408)
Q Consensus 296 ~v~~a~~~~ 304 (408)
+|++++++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998765
No 172
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.65 E-value=7.3e-16 Score=117.52 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....++|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++ +++..++|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999883 457789999999999999999996 688999999999998
Q ss_pred e
Q 046223 300 S 300 (408)
Q Consensus 300 a 300 (408)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 173
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-16 Score=118.48 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr 149 (408)
.++++|||+|||.++++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|. |+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~ 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ--AQ 75 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC--EE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe--eE
Confidence 4678999999999999999999999999999999875 34899999999999999999999998876 55
No 174
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=118.01 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=65.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
..+.++|||+|||.++|+++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..|. |+ .+++.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLH--GV--NINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCS--SC--BCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccC--Cc--EEEEEEC
Confidence 3467899999999999999999999999999999987 899999999999999999999998876 66 3555554
Q ss_pred C
Q 046223 159 S 159 (408)
Q Consensus 159 ~ 159 (408)
.
T Consensus 78 ~ 78 (90)
T 2dnq_A 78 K 78 (90)
T ss_dssp S
T ss_pred C
Confidence 4
No 175
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=122.45 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
.....+.++|||+|||.++|+++|+++|++||.|..|.+.+ .++|||||+|.+.++|++|++.|||..|. |+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~- 85 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD--HL- 85 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET--TE-
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC--Cc-
Confidence 34556789999999999999999999999999999999875 34899999999999999999999998876 66
Q ss_pred cceeccccC
Q 046223 151 YGLKNPYSS 159 (408)
Q Consensus 151 l~~~~~~s~ 159 (408)
.|++.|+.
T Consensus 86 -~l~v~~a~ 93 (103)
T 2cq0_A 86 -ILNVEWAK 93 (103)
T ss_dssp -ECEEEESS
T ss_pred -EEEEEECC
Confidence 45555544
No 176
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=3.7e-16 Score=132.70 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCC--Cceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFG--PVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
...+|||+||++++++++|+++|+.|| .|.+|+ .++.++|||||+|.+.++|++|++.|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 888883 4788899999999999999999999999999999999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 177
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=117.90 Aligned_cols=77 Identities=18% Similarity=0.394 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
...++|||+|| ++++++|+++|++||.|..|.. ...+|||||+|.+.++|++|++.|||..|+|+.|+|.|++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 34689999996 8999999999999999999964 47899999999999999999999999999999999999987654
No 178
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=120.13 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++ |+|..|. |+.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~-- 80 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM--GKK-- 80 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS--SCB--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC--CeE--
Confidence 345679999999999999999999999999999999975 358999999999999999998 9998876 663
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 81 l~V~~a~ 87 (99)
T 2dgs_A 81 VEVKRAE 87 (99)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 5555544
No 179
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=3.1e-15 Score=122.10 Aligned_cols=80 Identities=26% Similarity=0.371 Sum_probs=72.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....++|||+||+..+++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++.|||..++|+.|+|++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 34568999999999999999999999999999883 25668999999999999999999999999999999999999
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7654
No 180
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.2e-16 Score=120.63 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
....+.++|||+|||.++|+++|+++|++||+|..|++. +++|||||+|.+.++|++|++.|||..|. |+. |++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~--g~~--l~v~ 84 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLR--GKQ--LRVR 84 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBT--TBC--CEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeC--Cce--EEEE
Confidence 344577899999999999999999999999999999988 46999999999999999999999998876 663 5555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 85 ~a~ 87 (99)
T 2cpj_A 85 FAC 87 (99)
T ss_dssp ESS
T ss_pred EcC
Confidence 554
No 181
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=1.5e-16 Score=157.09 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+||+..+|+++|+++|++||.|..|. .++.++|||||+|.+.++|.+||+.|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3458999999999999999999999999999883 36778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
++...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87543
No 182
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=5.7e-16 Score=116.98 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
+.+|||+|||.++++++|+++|++||.|.+|.+.+ +++|||||+|.+.++|++|++.|||..|. |+ .+++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~--g~--~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--GR--PLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET--TE--ECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC--Cc--EEEEE
Confidence 46899999999999999999999999999999875 34899999999999999999999999876 66 35555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 77 ~a~ 79 (83)
T 3md1_A 77 WAA 79 (83)
T ss_dssp ECC
T ss_pred ecC
Confidence 543
No 183
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=9.8e-16 Score=121.58 Aligned_cols=79 Identities=20% Similarity=0.395 Sum_probs=68.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec------CccEEEEEECCHHHHHHHHHHh-cCcccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL------MEGIVTVHFYDLRHAEMAFKEI-REQHMQLQQQ 149 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~------~kG~afV~F~~~~~A~~Ai~~l-ng~~i~~~gr 149 (408)
......++|||+|||.++|+++|+++|++||.|..|++.+. ++|||||+|.+.++|++|++.| ||..|. |+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~--g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY--GR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS--SC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC--CC
Confidence 45567899999999999999999999999999999998754 4899999999999999999999 898876 66
Q ss_pred ccceeccccC
Q 046223 150 SYGLKNPYSS 159 (408)
Q Consensus 150 ~l~~~~~~s~ 159 (408)
.|++.|+.
T Consensus 88 --~l~v~~a~ 95 (107)
T 2cph_A 88 --RLVLEWAD 95 (107)
T ss_dssp --BCEEEECC
T ss_pred --EEEEEeCC
Confidence 45555544
No 184
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=7.9e-16 Score=123.85 Aligned_cols=79 Identities=13% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-----CccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL-----MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~-----~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+. ++|||||+|.+.++|++|++.|||..|. |+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~-- 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG--GR-- 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET--TE--
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CE--
Confidence 45567899999999999999999999999999999998763 3899999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|+|.|+.
T Consensus 86 ~l~V~~a~ 93 (115)
T 2dgo_A 86 QIRTNWAT 93 (115)
T ss_dssp ECEEEESS
T ss_pred EEEEEEcc
Confidence 45555554
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=123.68 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=67.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccE-EEEEECCHHHHHHHHHHhcCccccccccccceeccccCcc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGI-VTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGL 161 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~-afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~ 161 (408)
..|||+||++.+|+++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|++.|||..|.+.++ .|++.|+...
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~--~l~V~~Ak~~ 102 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCC--TLKIEYARPT 102 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS--EEEEECCSCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe--EEEEEEecCC
Confidence 34689999999999999999999999999998765 596 9999999999999999999999874434 5788888765
Q ss_pred c
Q 046223 162 M 162 (408)
Q Consensus 162 s 162 (408)
+
T Consensus 103 ~ 103 (124)
T 2e5i_A 103 R 103 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 186
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=122.66 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccc---cccceecc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQ---QSYGLKNP 156 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~g---r~l~~~~~ 156 (408)
....+|||+|||+++|+++|+++|++||+|..|++... |||||+|.+.++|++||+.|||..|.+.. + .|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~--~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA--YIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce--EEEEE
Confidence 45789999999999999999999999999999999865 99999999999999999999999886310 5 45665
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
++.
T Consensus 89 ~a~ 91 (108)
T 1x4c_A 89 VDG 91 (108)
T ss_dssp ESS
T ss_pred eCC
Confidence 554
No 187
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=126.69 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCC-CcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCC--ceeCCeEEEEEEecC
Q 046223 226 NNQGTIVVFNLDSG-VSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNG--QEIYGKHVVIEFSRP 302 (408)
Q Consensus 226 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g--~~~~g~~l~v~~a~~ 302 (408)
...++|||+||+++ +++++|+++|++||.|.+|+.. ..+|||||+|.+.++|++|++.|++ ..|.|+.|+|.|++.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 34689999999998 9999999999999999999643 5799999999999999999998864 569999999999976
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 188
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.2e-16 Score=116.59 Aligned_cols=73 Identities=19% Similarity=0.437 Sum_probs=65.6
Q ss_pred Cce-EEEcCCCCCCcHHH----HHHHHhcC-CCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 228 QGT-IVVFNLDSGVSSST----LKEIFQAF-GPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 228 ~~~-l~V~nLp~~~t~~~----L~~~F~~~-G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..+ |||+||++.+++++ |+++|++| |.|.+|. + |+|||+|.+.++|++|++.|||..+.||.|+|+||+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 355 99999999999887 55899999 5999983 2 999999999999999999999999999999999998
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
.+..
T Consensus 83 ~~sd 86 (96)
T 2diu_A 83 KNRE 86 (96)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 189
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=118.10 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=59.3
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 82 TRTLVLSYVPGDV------SETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 82 ~rtlfV~nLp~~v------te~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
+++|||+|||.++ |+++|+++|++||.|.+|.+.+ +++|||||+|.+.++|++|++.|||..|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 4789999999999 7899999999999999999875 46899999999999999999999998876
No 190
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=6e-16 Score=121.53 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
..++|||+|||.++|+++|+++|++||.|.+|++. +++|||||+|.+.++|++|++.|||..|. |+ .+++.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~--~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQ--GR--NLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEET--TE--ECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeEC--Ce--EEEEEecc
Confidence 46899999999999999999999999999999988 58999999999999999999999998876 66 45555543
No 191
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=129.97 Aligned_cols=82 Identities=34% Similarity=0.432 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceee----------ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----------RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH 294 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----------~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 294 (408)
....++|||+||++.+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3456899999999999999999999999998763 357889999999999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 046223 295 VVIEFSRPGGHS 306 (408)
Q Consensus 295 l~v~~a~~~~~~ 306 (408)
|+|.++++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 192
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=124.42 Aligned_cols=78 Identities=28% Similarity=0.452 Sum_probs=72.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||..+++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.|||..++|+.|+|+++++
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 48999999999999999999999999998883 3567799999999999999999999999999999999999987
Q ss_pred CCC
Q 046223 303 GGH 305 (408)
Q Consensus 303 ~~~ 305 (408)
+..
T Consensus 88 ~~~ 90 (104)
T 1p1t_A 88 EKN 90 (104)
T ss_dssp TTH
T ss_pred ccc
Confidence 654
No 193
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.2e-16 Score=124.09 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
....+|||+||+.++++++|+++|+.||.|... ..++.++|||||+|.+.++|++|++ |||..|.|+.|+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 346899999999999999999999999987662 2456789999999999999999999 99999999999999998
Q ss_pred CCCC
Q 046223 302 PGGH 305 (408)
Q Consensus 302 ~~~~ 305 (408)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 194
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.64 E-value=5.8e-16 Score=123.20 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
.....+++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..|. |+ .+++.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~--g~--~l~V~ 98 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFA--NQ--PLEVV 98 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEET--TE--ECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEEC--Ce--EEEEE
Confidence 345568999999999999999999999999999999987 899999999999999999999998875 66 45555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 99 ~a~ 101 (108)
T 2jvo_A 99 YSK 101 (108)
T ss_dssp SCS
T ss_pred Eec
Confidence 544
No 195
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=126.34 Aligned_cols=77 Identities=21% Similarity=0.493 Sum_probs=70.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+||+.++++++|+++|+.||.|..|+ .++..+|||||+|.+.++|++|+ .|||..|+|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 458999999999999999999999999999984 33678999999999999999999 999999999999999997
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 653
No 196
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.2e-16 Score=122.50 Aligned_cols=79 Identities=13% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCC-ceeecc------CCCCccEEEEEECCHHHHHHHHHHhC--CceeCCeEEEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGP-VKELRE------TPLKKHQRFIEFYDVRDAAKALKEMN--GQEIYGKHVVI 297 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-v~~v~~------~~~~~g~afV~F~~~~~A~~A~~~l~--g~~~~g~~l~v 297 (408)
..++|||+|||.++++++|+++|++||. |..+.. ++.++|||||+|.+.++|++|++.|| +..++|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3589999999999999999999999998 988842 34789999999999999999999996 58999999999
Q ss_pred EEecCCCC
Q 046223 298 EFSRPGGH 305 (408)
Q Consensus 298 ~~a~~~~~ 305 (408)
+|++++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987654
No 197
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=6.8e-16 Score=125.98 Aligned_cols=77 Identities=19% Similarity=0.303 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+||+.++++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|+ .|||..|+|+.|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 48999999999999999999999999999883 46778999999999999999999 7999999999999999986
Q ss_pred CCC
Q 046223 303 GGH 305 (408)
Q Consensus 303 ~~~ 305 (408)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 198
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=120.19 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|. |+ .|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--TK--PL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS--SS--BC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC--Cc--EE
Confidence 3445788999999999999999999999999999999886 46899999999999999999999998875 66 35
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 86 ~V~~a~ 91 (103)
T 2d9p_A 86 YVALAQ 91 (103)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 555544
No 199
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=7.5e-16 Score=122.06 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccc-cccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHM-QLQQQS 150 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i-~~~gr~ 150 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..+ .+.++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~- 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR- 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc-
Confidence 4455789999999999999999999999999999999876 3589999999999999999999999875 22356
Q ss_pred cceeccccC
Q 046223 151 YGLKNPYSS 159 (408)
Q Consensus 151 l~~~~~~s~ 159 (408)
.|++.|+.
T Consensus 87 -~l~v~~a~ 94 (106)
T 2dgp_A 87 -PIQVKPAD 94 (106)
T ss_dssp -CCEEEECC
T ss_pred -eEEEEECC
Confidence 45555544
No 200
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.8e-16 Score=116.32 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=65.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 230 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
+|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++ |||..++|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999983 367789999999999999999998 9999999999999875
No 201
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=124.37 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=70.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.++|||+|||.++++++|+++|++||.|..|... ..+|||||+|.+.++|++|++.|||..|+|+.|.|+|++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4899999999999999999999999999998643 588999999999999999999999999999999999997654
No 202
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=6.5e-16 Score=125.24 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=69.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccE-EEEEECCHHHHHHHHHHhCCceeCC--eEEEEEEecCCCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQ-RFIEFYDVRDAAKALKEMNGQEIYG--KHVVIEFSRPGGH 305 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~ 305 (408)
..|||+||++.+++++|+++|++||.|.+|+...+ .|| |||+|.+.++|.+|++.|||..|.| +.|+|+||+++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 45689999999999999999999999999854333 486 9999999999999999999999987 6999999998865
Q ss_pred CCC
Q 046223 306 SKK 308 (408)
Q Consensus 306 ~~~ 308 (408)
..+
T Consensus 105 ~v~ 107 (124)
T 2e5i_A 105 NVI 107 (124)
T ss_dssp CCS
T ss_pred eee
Confidence 433
No 203
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=3.7e-16 Score=124.56 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC-CeEEEEEe-ecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFG-EVRGVQME-RLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G-~V~~v~~~-~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
...+|||+|||+++|+++|+++|++|| +|..+.+. ++++|||||+|.+.++|++|++.|||..|. ||. |++.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~--Gr~--i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR--GSV--ITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET--TEE--EEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC--CeE--EEEEEC
Confidence 467999999999999999999999999 99999985 468999999999999999999999998876 774 444443
No 204
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=123.74 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..++|||+|||.++|+++|+++|++||.|.+|+ ..+.++|||||+|.+.++|.+|++ ++|..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 358999999999999999999999999999883 237789999999999999999999 999999999999999864
No 205
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.6e-16 Score=123.57 Aligned_cols=79 Identities=13% Similarity=0.224 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+||+.++++++|+++|+.||.|..|+ .++.++|||||+|.+.++|++|++. +|..|+|+.|+|++++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999998883 4567899999999999999999997 9999999999999998
Q ss_pred CCCCC
Q 046223 302 PGGHS 306 (408)
Q Consensus 302 ~~~~~ 306 (408)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 87643
No 206
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=7.3e-16 Score=117.89 Aligned_cols=76 Identities=14% Similarity=0.304 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
..++|||+|||.++++++|+++|++| .|..++.. .++|||||+|.+.++|++|++.|||..++|++|+|+++....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 35899999999999999999999999 89888654 789999999999999999999999999999999999986543
No 207
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.63 E-value=1.2e-15 Score=125.42 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||+|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~--g~-- 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--GR-- 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS--SS--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--CE--
Confidence 3455688999999999999999999999999999999875 46899999999999999999999998876 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|++.|+.
T Consensus 117 ~l~V~~a~ 124 (129)
T 2kxn_B 117 RIRVDFSI 124 (129)
T ss_dssp CCEESCCS
T ss_pred EEEEEEec
Confidence 45555544
No 208
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=120.85 Aligned_cols=80 Identities=24% Similarity=0.368 Sum_probs=67.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE-EEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVR-GVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~-~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
...++++|||+|||.++|+++|+++|++||.|. .|++.+ +++|||||+|.+.++|++|++.|||..|. |+.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~~ 82 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP--GATP 82 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES--SCSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC--CCCc
Confidence 345689999999999999999999999999999 998875 34799999999999999999999998876 5541
Q ss_pred --ceeccccC
Q 046223 152 --GLKNPYSS 159 (408)
Q Consensus 152 --~~~~~~s~ 159 (408)
.+++.|+.
T Consensus 83 ~~~l~v~~a~ 92 (99)
T 2div_A 83 AKRFKLNYAT 92 (99)
T ss_dssp CEECCEEETT
T ss_pred ceeEEEeecC
Confidence 25665544
No 209
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=121.68 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=63.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....++|||+|||.++|+++|+++|++||.|.+|.+.+ .++|||||+|.+.++|++|++ ++|..|. |+.|.+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~--gr~l~V~ 84 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK--ETDLLIL 84 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT--TTTCEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC--CEEEEEE
Confidence 44578999999999999999999999999999999886 469999999999999999998 8987765 6744433
No 210
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=117.72 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..|+ .++.++|||||+|.+.++|++|++ ++..|+|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4468999999999999999999999999999883 357789999999999999999998 578999999999999
Q ss_pred cCCCC
Q 046223 301 RPGGH 305 (408)
Q Consensus 301 ~~~~~ 305 (408)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87654
No 211
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=119.01 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCC------cHHHHHHHHhcCCCceeec---cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe-EEEE
Q 046223 229 GTIVVFNLDSGV------SSSTLKEIFQAFGPVKELR---ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK-HVVI 297 (408)
Q Consensus 229 ~~l~V~nLp~~~------t~~~L~~~F~~~G~v~~v~---~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~-~l~v 297 (408)
++|||+|||..+ ++++|+++|++||.|..++ .++.++|||||+|.+.++|++|++.|||..++|+ .|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 789999999999 7899999999999999983 4567899999999999999999999999999999 8876
No 212
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=2.9e-16 Score=120.64 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=61.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFG--EVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G--~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
.+|||+|||+++|+++|+++|++|| .|.+|++.. +++|||||+|.+.++|++|++.|||..|. ||. ++|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~--gr~--i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQN--PVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS--SCC--CEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC--CEE--EEE
Confidence 4799999999999999999999999 999998876 45899999999999999999999998876 773 455
Q ss_pred ccc
Q 046223 156 PYS 158 (408)
Q Consensus 156 ~~s 158 (408)
.++
T Consensus 78 ~~~ 80 (90)
T 3p5t_L 78 TPS 80 (90)
T ss_dssp CCC
T ss_pred EEC
Confidence 443
No 213
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=121.11 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhc------Ccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIR------EQHMQ 145 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~ln------g~~i~ 145 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.|| |..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4456789999999999999999999999999999999885 469999999999999999999999 87765
Q ss_pred ccccccceeccccC
Q 046223 146 LQQQSYGLKNPYSS 159 (408)
Q Consensus 146 ~~gr~l~~~~~~s~ 159 (408)
|+ .|++.|+.
T Consensus 90 --g~--~l~v~~a~ 99 (111)
T 1x4h_A 90 --GR--QLKVDLAV 99 (111)
T ss_dssp --SC--EEEEECCC
T ss_pred --CE--EEEEEECC
Confidence 66 35555544
No 214
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=122.74 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=68.4
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--------EEEEee-----cCccEEEEEECCHHHHHHHHHHhcCc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVR--------GVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQ 142 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~--------~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~ 142 (408)
.......++|||+|||.++|+++|+++|++||.|. .|++.. +++|||||+|.+.++|++|++.|||.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 35566789999999999999999999999999998 587765 34899999999999999999999998
Q ss_pred cccccccccceeccccC
Q 046223 143 HMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 143 ~i~~~gr~l~~~~~~s~ 159 (408)
.|. |+. |++.++.
T Consensus 89 ~~~--g~~--l~V~~a~ 101 (113)
T 2cpe_A 89 DFQ--GSK--LKVSLAR 101 (113)
T ss_dssp EET--TEE--CEEECSS
T ss_pred ccC--CCE--EEEEECC
Confidence 876 663 5555544
No 215
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=121.56 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=67.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+ .
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GR--T 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET--TE--E
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--Cc--E
Confidence 345688999999999999999999999999999999875 36999999999999999999999998876 66 4
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.|+.
T Consensus 84 l~V~~a~ 90 (102)
T 2cqb_A 84 IRVNLAK 90 (102)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 5555544
No 216
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=119.75 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=67.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...+.++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~-- 83 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD--GRQ-- 83 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT--SCC--
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CeE--
Confidence 344678999999999999999999999999999999976 35899999999999999999999998876 663
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.|+.
T Consensus 84 l~v~~a~ 90 (102)
T 1x5s_A 84 IRVDQAG 90 (102)
T ss_dssp CEEEEEE
T ss_pred EEEEECC
Confidence 5555544
No 217
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=4.5e-16 Score=122.06 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCC------CCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 79 TGPTRTLVLSYVPG------DVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 79 ~~~~rtlfV~nLp~------~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
...+++|||+|||. ++++++|+++|++||.|.+|++.+ +++|||||+|.+.++|++|++.|||..|.
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~-- 80 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD-- 80 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC--
Confidence 34578999999999 999999999999999999999875 46899999999999999999999998876
Q ss_pred c-cccceecccc
Q 046223 148 Q-QSYGLKNPYS 158 (408)
Q Consensus 148 g-r~l~~~~~~s 158 (408)
| +. +++.++
T Consensus 81 g~r~--l~V~~a 90 (100)
T 3ns6_A 81 LKHR--LFLYTM 90 (100)
T ss_dssp SSCB--CEEEES
T ss_pred CCeE--EEEEEC
Confidence 5 63 455443
No 218
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-16 Score=121.07 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=68.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
..++|||+|||.++++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.|||..+.|+.|++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 358999999999999999999999999999883 456779999999999999999999999999999999877654
No 219
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-16 Score=123.32 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec------cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
...++|||+||+.++++++|+++|++|| |.+++ .++.++|||||+|.+.++|.+|+ .|||..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4469999999999999999999999999 99883 35678999999999999999999 8999999999999999
Q ss_pred ecCCC
Q 046223 300 SRPGG 304 (408)
Q Consensus 300 a~~~~ 304 (408)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 97653
No 220
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.62 E-value=4.4e-16 Score=122.16 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=62.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec------CccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL------MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~------~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
.....++|||+|||.++|+++|+++|++|| |.+|++.+. ++|||||+|.+.++|++|+ .|||..|. |+.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~--g~~- 89 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NRR- 89 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT--TBC-
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC--CeE-
Confidence 345679999999999999999999999999 999998753 4899999999999999999 89998876 663
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
+++.++.
T Consensus 90 -l~V~~a~ 96 (100)
T 2j76_E 90 -IRVDVAD 96 (100)
T ss_dssp -CCCEECC
T ss_pred -EEEEecc
Confidence 4554443
No 221
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=9.7e-16 Score=117.41 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=61.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
..+..+|||+|||+++||++|+++|++||.|.+|++.++++|||||+|.+.++|+ .|+|..+.+.++ .+.+.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~--~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGI--SVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTE--EEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCE--EEEEEEc
Confidence 3457899999999999999999999999999999999889999999999999998 367777766666 4444443
No 222
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=121.55 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....++|||+|||.++|+++|+++|++||.|..|.+.. +++|||||+|.+.++|++|++.|||..|. |+ .|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--g~--~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH--GK--AIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS--SS--BCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC--CE--EEE
Confidence 34678999999999999999999999999999999876 35899999999999999999999998876 66 456
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.++.
T Consensus 80 V~~a~ 84 (116)
T 2fy1_A 80 VEQAK 84 (116)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 65554
No 223
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=121.47 Aligned_cols=79 Identities=15% Similarity=0.100 Sum_probs=67.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
....++++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~-- 85 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--DRP-- 85 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--CCE--
Confidence 3445688999999999999999999999999999999876 34899999999999999999999998876 664
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 86 l~v~~a~ 92 (114)
T 2do0_A 86 MHVKMDE 92 (114)
T ss_dssp CEEEECS
T ss_pred EEEEEcc
Confidence 4554443
No 224
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.9e-16 Score=120.33 Aligned_cols=76 Identities=12% Similarity=0.299 Sum_probs=66.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGV-QMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v-~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
.++++|||+|||.++|+++|+++|++||.|..| ++.+ .++|||||+|.+.++|++|++.|||..|. |+. |
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~--l 78 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC--NRP--I 78 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET--TEE--C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CEE--E
Confidence 467899999999999999999999999999998 8876 35899999999999999999999998876 664 5
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 79 ~v~~a~ 84 (96)
T 1x5t_A 79 TVSYAF 84 (96)
T ss_dssp EEEESC
T ss_pred EEEEec
Confidence 555544
No 225
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=125.80 Aligned_cols=75 Identities=27% Similarity=0.491 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||..+++++|+++|++||.|..++ .++..+|||||+|.+.++|++|++.|||..|+|+.|+|++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4569999999999999999999999999999983 45678999999999999999999999999999999999986
No 226
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.62 E-value=1.4e-15 Score=120.77 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
...+.++|||+|||.++|+++|+++|++||.|..|.+.. +++|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD--GRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC--CcEE
Confidence 445689999999999999999999999999999999885 35899999999999999999999998876 6643
No 227
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=8.8e-16 Score=119.58 Aligned_cols=78 Identities=17% Similarity=0.336 Sum_probs=67.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVR----RDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~----~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
...++++|||+|||.++++++|+ ++|++||.|..|.+.+ +++|||||+|.+.++|++|++.|||..|. |+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~-- 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY--DK-- 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET--TE--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC--Cc--
Confidence 34568999999999999999999 9999999999998875 56899999999999999999999998875 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.+++.|+.
T Consensus 80 ~l~v~~a~ 87 (97)
T 1nu4_A 80 PMRIQYAK 87 (97)
T ss_dssp ECEEEECS
T ss_pred EEEEEEcc
Confidence 45555554
No 228
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=1e-15 Score=123.25 Aligned_cols=78 Identities=19% Similarity=0.471 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
..++|||+|||..+++++|+++|+.||.|..+. ..+.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+++..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 358999999999999999999999999999984 346678999999999999999999999999999999999998654
No 229
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=116.65 Aligned_cols=76 Identities=16% Similarity=0.229 Sum_probs=66.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
......++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|. |+ .+++.
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l~V~ 77 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQ--GK--RMHVQ 77 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEET--TE--EEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeC--Cc--EEEEE
Confidence 345578999999999999999999999999999999987 679999999999999999999998876 66 45555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 78 ~a~ 80 (92)
T 2dgt_A 78 LST 80 (92)
T ss_dssp ESS
T ss_pred Ecc
Confidence 544
No 230
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.3e-15 Score=121.55 Aligned_cols=79 Identities=11% Similarity=0.244 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||.|..|.+.. .++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~- 97 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQT- 97 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET--TEE-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC--CcE-
Confidence 3455679999999999999999999999999999999875 34899999999999999999999998876 663
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
|++.|+.
T Consensus 98 -l~V~~a~ 104 (110)
T 1oo0_B 98 -IQVDWCF 104 (110)
T ss_dssp -CEEEESE
T ss_pred -EEEEEcc
Confidence 5555543
No 231
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=115.74 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=64.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee------cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
..++|||+|||.++|+++|+++|++||.|..|.+.. +++|||||+|.+.++|++|++.|||..|. |+. ++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~ 78 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID--GQE--IT 78 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET--TEE--CE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC--CeE--EE
Confidence 468999999999999999999999999999998865 26999999999999999999999998876 664 44
Q ss_pred ccc
Q 046223 155 NPY 157 (408)
Q Consensus 155 ~~~ 157 (408)
+.+
T Consensus 79 v~~ 81 (88)
T 4a8x_A 79 ATA 81 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 232
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=118.13 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 80 GPTRTLVLSYVPGDVSETIVR----RDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~----~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....+|||+|||.++++++|+ ++|++||.|.+|++.. ..+|||||+|.+.++|++|++.|||..|. || .|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~--gr--~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG--SK--KI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET--TE--EE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC--Ce--EE
Confidence 356799999999999999999 9999999999999985 23899999999999999999999998876 77 45
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.++.
T Consensus 83 ~V~~a~ 88 (96)
T 2dgx_A 83 LVSLAT 88 (96)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 665544
No 233
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=120.71 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
.....++|||+|||.++|+++|+++|++||.|..|++.+. +|||||+|.+.++|++|++.|||..|. |+ .|++.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l~v~~ 95 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIE--GH--VVKCYW 95 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEET--TE--ECEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEEC--Cc--EEEEEe
Confidence 3446789999999999999999999999999999999864 999999999999999999999998876 66 455655
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 96 a~ 97 (109)
T 1x4g_A 96 GK 97 (109)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 234
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=119.86 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCcee-e----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE-L----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~-v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....+|||+|||+++++++|+++|+.||.|.. | ..+++++|||||+|.+.++|++|++. |+..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 44689999999999999999999999999876 5 24678899999999999999999997 999999999999998
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
....
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6544
No 235
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=116.88 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=64.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe-ecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME-RLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~-~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
....+++|||+|||.++|+++|+++|++||.|. +.++ .+++|||||+|.+.++|++|++.|||..|. |+. |++.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG--TDT--LRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS--SSC--CEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC--CcE--EEEE
Confidence 345678999999999999999999999999996 4444 367999999999999999999999998876 663 5555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
++.
T Consensus 90 ~a~ 92 (97)
T 2e5j_A 90 LAR 92 (97)
T ss_dssp ECC
T ss_pred EcC
Confidence 543
No 236
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=118.96 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhc-cCCeEEEEEeec----CccEEEEEECCHHHHHHHHHHhcCcc-ccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEV-FGEVRGVQMERL----MEGIVTVHFYDLRHAEMAFKEIREQH-MQLQQQSYG 152 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~-~G~V~~v~~~~~----~kG~afV~F~~~~~A~~Ai~~lng~~-i~~~gr~l~ 152 (408)
..+.++|||+|||.++|+++|+++|++ ||.|..|++.+. ++|||||+|.+.++|++|++.|||.. |. |+ .
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~--g~--~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG--SK--P 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS--SS--C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC--CE--e
Confidence 346789999999999999999999999 999999998763 69999999999999999999999988 65 66 3
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 82 l~v~~a~ 88 (104)
T 2dhg_A 82 VRLSVAI 88 (104)
T ss_dssp CCCCBCC
T ss_pred EEEEEcc
Confidence 5555543
No 237
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=120.56 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEcCCCCCC------CHHHHHHHhhccCCeEEEEEee---cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 77 PSTGPTRTLVLSYVPGDV------SETIVRRDLEVFGEVRGVQMER---LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~v------te~~L~~~F~~~G~V~~v~~~~---~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
.....+++|||+|||.++ |+++|+++|++||.|..|.+.+ +++|||||+|.+.++|++|++.|||..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 445567899999999999 7899999999999999999875 46899999999999999999999998876
No 238
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.5e-16 Score=122.87 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=66.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
....++|||+|||.++|+++|+++|++||.|..|.+. .++|||||+|.+.++|++|++.|||..|. |+ .|++.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~--~l~V~~a 81 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFH--HV--PLYLEWA 81 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSS--SS--BCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEEC--Ce--EEEEEEC
Confidence 3456899999999999999999999999999999887 48999999999999999999999998876 66 4556565
Q ss_pred C
Q 046223 159 S 159 (408)
Q Consensus 159 ~ 159 (408)
.
T Consensus 82 ~ 82 (111)
T 1whx_A 82 P 82 (111)
T ss_dssp E
T ss_pred C
Confidence 4
No 239
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.1e-15 Score=120.00 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=68.8
Q ss_pred CCceEEE--cCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCcee-----CCeEEEEEE
Q 046223 227 NQGTIVV--FNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI-----YGKHVVIEF 299 (408)
Q Consensus 227 ~~~~l~V--~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~-----~g~~l~v~~ 299 (408)
+.++||| +||++++++++|+++|++||.|.+|... ..+|||||+|.+.++|++|++.|||+++ .|+.|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 3588999 7799999999999999999999998643 4689999999999999999999999998 689999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
++..
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 9754
No 240
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=124.74 Aligned_cols=78 Identities=10% Similarity=0.241 Sum_probs=66.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--EEEee-----cCccEEEEEECCHHHHHHHHHHhcCc----ccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG--VQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQ----HMQ 145 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~--v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~----~i~ 145 (408)
.....+++|||+|||+++||++|+++|++||.|.. |++++ +++|||||+|.+. +|.+|++.|||. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 45567899999999999999999999999999976 88775 4599999999999 999999999998 654
Q ss_pred ccccccceeccccC
Q 046223 146 LQQQSYGLKNPYSS 159 (408)
Q Consensus 146 ~~gr~l~~~~~~s~ 159 (408)
||. |+|.|+.
T Consensus 97 --gr~--l~V~~a~ 106 (131)
T 2m2b_A 97 --GKT--INVEFAK 106 (131)
T ss_dssp --GCC--CCCEECC
T ss_pred --CEE--EEEEECC
Confidence 774 4444543
No 241
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.8e-15 Score=122.40 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCC---ceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGP---VKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
....+|||+|||+++|+++|+++|+.||. |..|+ ..++++|||||+|.+.++|++|++ |||..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34689999999999999999999999998 66662 347789999999999999999999 99999999999999
Q ss_pred EecCC
Q 046223 299 FSRPG 303 (408)
Q Consensus 299 ~a~~~ 303 (408)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 242
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.6e-15 Score=119.75 Aligned_cols=80 Identities=18% Similarity=0.329 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCcee--------CC
Q 046223 225 GNNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEI--------YG 292 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~--------~g 292 (408)
....++|||+|||.++++++|+++|+.||.|..++ .++.++|||||+|.+.++|++|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 34568999999999999999999999999999883 3567789999999999999999999999999 57
Q ss_pred eEEEEEEecCCC
Q 046223 293 KHVVIEFSRPGG 304 (408)
Q Consensus 293 ~~l~v~~a~~~~ 304 (408)
+.|.|.|++++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999998653
No 243
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.7e-15 Score=116.55 Aligned_cols=79 Identities=13% Similarity=0.196 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec--cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR--ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~--~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
...++|||+|||+++++++|+++|++||.|..++ ......+.|||+|.+.++|++|++.|||..|+|+.|+|++++++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3458999999999999999999999999999983 33345566999999999999999999999999999999999876
Q ss_pred C
Q 046223 304 G 304 (408)
Q Consensus 304 ~ 304 (408)
.
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 244
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.4e-15 Score=121.58 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=68.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHH---HHhhccCCeEEEEEee--------cCccEEEEEECCHHHHHHHHHHhcCccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVR---RDLEVFGEVRGVQMER--------LMEGIVTVHFYDLRHAEMAFKEIREQHM 144 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~---~~F~~~G~V~~v~~~~--------~~kG~afV~F~~~~~A~~Ai~~lng~~i 144 (408)
.......++|||+|||+++++++|+ ++|++||+|..|.+.+ .++|||||+|.+.++|++|++.|||..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445567899999999999999999 9999999999999875 2358999999999999999999999987
Q ss_pred cccccccceeccccC
Q 046223 145 QLQQQSYGLKNPYSS 159 (408)
Q Consensus 145 ~~~gr~l~~~~~~s~ 159 (408)
. |+ .|++.|+.
T Consensus 89 ~--gr--~l~V~~a~ 99 (111)
T 2cpi_A 89 D--GR--TLKASLGT 99 (111)
T ss_dssp T--TE--EEEEESCC
T ss_pred C--CE--EEEEEecc
Confidence 6 77 46666655
No 245
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=116.14 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=66.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
.++|||+|||.++++++|+++|++||.|.+|........||||+|.+.++|++|++ |||..|+|+.|+|+++.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 47999999999999999999999999999983221111299999999999999999 99999999999999886554
No 246
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=2e-16 Score=121.55 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=66.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
++|||+|||.++++++|+++|++||.|..++ .++.++|||||+|.+.+ |.+|++.|||..++|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 6899999999999999999999999999883 34778999999999999 99999999999999999999999775
Q ss_pred C
Q 046223 304 G 304 (408)
Q Consensus 304 ~ 304 (408)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 247
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=112.40 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHHHhhcc-CCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 81 PTRT-LVLSYVPGDVSETI----VRRDLEVF-GEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 81 ~~rt-lfV~nLp~~vte~~----L~~~F~~~-G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
++.| |||+|||+++++++ |+++|++| |+|.+| ..|+|||+|.+.++|++|++.|||..|. || .++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-----tgG~AfV~F~~~esA~~A~~~l~G~~l~--gr--~i~ 77 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-----TGCSAILRFINQDSAERAQKRMENEDVF--GN--RII 77 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-----CTTCEEEEESSHHHHHHHHHHHTTCCSS--SS--CCE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-----ecCEEEEEECCHHHHHHHHHHhcCCccC--Cc--eEE
Confidence 4666 99999999999998 55899999 599998 2499999999999999999999999987 77 577
Q ss_pred ccccCccc
Q 046223 155 NPYSSGLM 162 (408)
Q Consensus 155 ~~~s~~~s 162 (408)
+.|+...+
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 77877554
No 248
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=122.28 Aligned_cols=78 Identities=9% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCc-eee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPV-KEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....+|||+|||+++|+++|+++|+.||.| ..| ..++.++|||||+|.+.++|++|++. ||..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 446899999999999999999999999999 555 23577899999999999999999996 999999999999999
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 249
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=2.6e-15 Score=118.34 Aligned_cols=75 Identities=16% Similarity=0.345 Sum_probs=65.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...+.++|||+|||.++|+++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..|. ++ .|++.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l~v~~ 79 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLE--GE--NIEIVF 79 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEET--TE--EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccC--CC--EEEEEE
Confidence 34467899999999999999999999999999999886 789999999999999999999998876 66 455555
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 80 a~ 81 (103)
T 2dgu_A 80 AK 81 (103)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 250
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=115.33 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=65.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
....++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|. |+ .+++.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVK--GK--RINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEET--TE--ECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEEC--Cc--EEEEEEC
Confidence 4567899999999999999999999999999999987 679999999999999999999998876 66 3555554
Q ss_pred C
Q 046223 159 S 159 (408)
Q Consensus 159 ~ 159 (408)
.
T Consensus 79 ~ 79 (90)
T 2dnp_A 79 T 79 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 251
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=121.61 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=66.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
.....++|||+|||.++|+++|+++|++||.|..|++.. .++|||||+|.+.++|++|+ .|||..|. |+.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~-- 95 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL--GVP-- 95 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET--TEE--
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC--CeE--
Confidence 345678999999999999999999999999999999974 46899999999999999999 99998876 663
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 96 l~V~~a~ 102 (114)
T 2cq4_A 96 IIVQASQ 102 (114)
T ss_dssp EEEEEHH
T ss_pred EEEEecC
Confidence 5554443
No 252
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.60 E-value=3e-15 Score=126.39 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
......++|||+|||+++|+++|+++|++||.|.+|++.+.++|||||+|.+.++|++|++.|||..|. |+. |++.
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~v~ 143 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLC--GCR--VRVE 143 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSS--SSC--CEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEEC--CeE--EEEE
Confidence 344567999999999999999999999999999999999888999999999999999999999998875 673 5555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 144 ~a~ 146 (150)
T 2i2y_A 144 LSN 146 (150)
T ss_dssp ECC
T ss_pred EcC
Confidence 543
No 253
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.6e-16 Score=115.23 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=65.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
++|||+|||.++++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++.++ ..++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999998883 356779999999999999999999999 9999999999987
No 254
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=118.41 Aligned_cols=78 Identities=13% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||+|..|++.+ .++|||||+|.+.++|++|++. ++..|. |+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~--g~-- 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD--GR-- 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET--TE--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC--CE--
Confidence 4456789999999999999999999999999999999876 3479999999999999999998 987766 66
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
.|++.++.
T Consensus 86 ~l~V~~a~ 93 (105)
T 2dh8_A 86 NIDPKPCT 93 (105)
T ss_dssp EEBCCCSC
T ss_pred EEEEEEcc
Confidence 45555544
No 255
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.7e-15 Score=115.07 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=65.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcc--CCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVF--GEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~--G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
...++++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..|. |+ .|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLD--GS--PIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEET--TE--EEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeC--Cc--EEEE
Confidence 34567899999999999999999999999 999998774 899999999999999999999999876 66 4566
Q ss_pred cccC
Q 046223 156 PYSS 159 (408)
Q Consensus 156 ~~s~ 159 (408)
.|+.
T Consensus 84 ~~a~ 87 (99)
T 2cpd_A 84 TLAK 87 (99)
T ss_dssp ECCC
T ss_pred EECC
Confidence 5554
No 256
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=118.34 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee------cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
..+.++|||+|||.++|+++|+++|+.|| |..|.+.+ +++|||||+|.+.++|++|+ .|||..|. |+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~-- 85 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG--NKR-- 85 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET--TEE--
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC--CcE--
Confidence 34578999999999999999999999999 99999874 34899999999999999999 89998875 663
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 86 l~V~~a~ 92 (104)
T 1wi8_A 86 IRVDVAD 92 (104)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 5555544
No 257
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.60 E-value=2.5e-15 Score=114.53 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++ +++..|. |+.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~--g~~i 82 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD--GRVI 82 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET--TEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC--CEEE
Confidence 4556789999999999999999999999999999999875 348999999999999999996 4676654 6644
Q ss_pred c
Q 046223 152 G 152 (408)
Q Consensus 152 ~ 152 (408)
.
T Consensus 83 ~ 83 (87)
T 3s7r_A 83 D 83 (87)
T ss_dssp E
T ss_pred E
Confidence 3
No 258
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4e-15 Score=119.89 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 76 PPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 76 ~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
.......++|||+|||.++||++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|++ .|. ++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--g~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--GRK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET--TEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC--CEE
Confidence 34556789999999999999999999999999999999976 3589999999999999999999998 554 674
Q ss_pred cceecccc
Q 046223 151 YGLKNPYS 158 (408)
Q Consensus 151 l~~~~~~s 158 (408)
|+|.++
T Consensus 88 --l~V~~a 93 (116)
T 2cqd_A 88 --ANVNLA 93 (116)
T ss_dssp --CEEEES
T ss_pred --EEEEEc
Confidence 455444
No 259
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=4.7e-15 Score=113.58 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=62.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCce--eCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQE--IYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~--~~g~~l~v~~a~~~~ 304 (408)
...+|||+|||+++|+++|+++|++||.|.+++....++|||||+|.+.++|++ |+|.. +.|+.|.|.+++++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 358999999999999999999999999999997665689999999999999983 66665 459999999998765
Q ss_pred C
Q 046223 305 H 305 (408)
Q Consensus 305 ~ 305 (408)
.
T Consensus 86 ~ 86 (89)
T 3d2w_A 86 N 86 (89)
T ss_dssp -
T ss_pred c
Confidence 3
No 260
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.6e-16 Score=125.42 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
....+|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|++|++ |||..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999998763 3567789999999999999999999 9999999999999999
Q ss_pred cCC
Q 046223 301 RPG 303 (408)
Q Consensus 301 ~~~ 303 (408)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 261
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.6e-15 Score=115.96 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPG-DVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~-~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...++++|||+|||. ++|+++|+++|++||.|..|.+. +|||||+|.+.++|++|++.|||..+. |+. +++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~--l~V~ 78 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNF--GKK--LILE 78 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCB--TTT--BCEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeC--CcE--EEEE
Confidence 345688999999998 99999999999999999999884 899999999999999999999998876 664 4554
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
++.
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 443
No 262
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=6.5e-15 Score=117.50 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=65.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 79 TGPTRTLVLSYVPGD-VSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~-vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...+++|||+|||.+ +|+++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.|||..|. |+. |++.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~~--l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLA--GQT--LDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEET--TEE--CCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEEC--CeE--EEEEE
Confidence 345689999999999 999999999999999999988 6899999999999999999999998876 663 55555
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 263
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1e-15 Score=118.70 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=62.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..++|||+|||.++|+++|+++|++||.|..+.++. +++|||||+|.+.++|++|++.|||..|. ||. +++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~--l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRK--VKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE--CEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC--CcE--EEE
Confidence 468999999999999999999999999998766654 45899999999999999999999998876 674 444
Q ss_pred cc
Q 046223 156 PY 157 (408)
Q Consensus 156 ~~ 157 (408)
.+
T Consensus 90 ~~ 91 (95)
T 2ek1_A 90 SG 91 (95)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 264
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=118.31 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
.....++|||+|||.++|+++|+++|++||.|..+.++. +++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~~-- 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--SRK-- 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET--TEE--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC--CeE--
Confidence 344568999999999999999999999999998755543 35899999999999999999999998876 674
Q ss_pred eecccc
Q 046223 153 LKNPYS 158 (408)
Q Consensus 153 ~~~~~s 158 (408)
+++.++
T Consensus 87 l~V~~a 92 (98)
T 2cqp_A 87 VKLVLG 92 (98)
T ss_dssp CEEEES
T ss_pred EEEEEc
Confidence 455443
No 265
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=3.8e-15 Score=121.89 Aligned_cols=79 Identities=14% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||.|..|.+.. .++|||||+|.+.++|++|++.|||..|. |+.
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~- 93 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--GQP- 93 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS--SSB-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CeE-
Confidence 3445688999999999999999999999999999999875 34999999999999999999999998875 663
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
|++.|+.
T Consensus 94 -l~v~~a~ 100 (126)
T 3ex7_B 94 -ISVDWCF 100 (126)
T ss_dssp -CEEEESE
T ss_pred -EEEEEec
Confidence 5555544
No 266
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.8e-15 Score=125.01 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCC---ceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGP---VKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
....+|||+|||+++|+++|+++|+.||. |..| ...++++|||||+|.+.++|++|++ |||..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 44689999999999999999999999999 6666 2347889999999999999999999 99999999999999
Q ss_pred EecCC
Q 046223 299 FSRPG 303 (408)
Q Consensus 299 ~a~~~ 303 (408)
++..+
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98643
No 267
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.9e-15 Score=118.89 Aligned_cols=76 Identities=13% Similarity=0.199 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
...+|||+|||+++|++||+++|+.||.+ .| ..+++++|||||+|.+.++|++|++ +|+..|+|+.|+|.++..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 35899999999999999999999999954 66 2367889999999999999999995 899999999999999876
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 268
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.59 E-value=3.1e-15 Score=114.36 Aligned_cols=74 Identities=11% Similarity=0.146 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
...++|||+|||+++++++|+++|++| +|..|++. +++|||||+|.+.++|++|++.|||..+. |+ .+++.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~--~l~V~~a~ 76 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFR--GK--DLIVQLQP 76 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEET--TE--EEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeEC--Cc--EEEEEEcC
Confidence 457899999999999999999999999 99999886 68999999999999999999999998876 67 35555554
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=116.93 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=63.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEeecCccEEEEEECCHHHHHHHHHHhcC-ccccccccccceecc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGE-VRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE-QHMQLQQQSYGLKNP 156 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~-V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng-~~i~~~gr~l~~~~~ 156 (408)
....++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..|. |+ .+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~--g~--~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELH--GK--IMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEET--TE--ECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeEC--CE--EEEEE
Confidence 346789999999999999999999999999 6666653 699999999999999999999999 7765 66 35555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 79 ~a~ 81 (93)
T 2cqh_A 79 YSV 81 (93)
T ss_dssp ECC
T ss_pred Ecc
Confidence 544
No 270
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=120.54 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....++|||+|||.++++++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.|||..|. |+. +
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l 80 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS--GRA--L 80 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS--SSC--B
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC--CcE--E
Confidence 34578999999999999999999999999999999875 33899999999999999999999998875 663 5
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 81 ~v~~a~ 86 (104)
T 1p1t_A 81 RVDNAA 86 (104)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 555543
No 271
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=8.4e-15 Score=117.61 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.|||..|.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 3445678999999999999999999999999999999876 35899999999999999999999999875
No 272
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=2.3e-15 Score=121.20 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeE-----EEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKH-----VVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~-----l~v~~a~ 301 (408)
...+|||+|||+++++++|+++|++||.|..|..... |||||+|.+.++|++|++.|||..|+|+. |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 3589999999999999999999999999999864332 99999999999999999999999999988 7777776
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 273
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=5e-15 Score=131.67 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=72.2
Q ss_pred CCceEEEcCCC-CCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLD-SGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp-~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
++++|||+||+ ..+++++|+++|++||.|.+|+.....+|||||+|.+.++|++|++.|||..+.|+.|+|.+++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 35899999999 8999999999999999999997666678999999999999999999999999999999999997544
No 274
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=6e-15 Score=116.22 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=64.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...+.++|||+|||.++|+++|+++|++|| |..|++.+ +++|||||+|.+.++|++|+ .|||..|. |+ .
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~--~ 84 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG--DR--S 84 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET--TE--E
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC--Ce--E
Confidence 344678999999999999999999999997 99999876 34899999999999999999 89998876 66 3
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 85 l~V~~a~ 91 (103)
T 2dng_A 85 LRVDIAE 91 (103)
T ss_dssp CEEEECC
T ss_pred EEEEEec
Confidence 5555544
No 275
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.58 E-value=3.2e-15 Score=119.12 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.+ |..| .|+.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 4556789999999999999999999999999999999875 35899999999999999999876 4554 47744
Q ss_pred cee
Q 046223 152 GLK 154 (408)
Q Consensus 152 ~~~ 154 (408)
.+.
T Consensus 97 ~V~ 99 (109)
T 2rs2_A 97 DPK 99 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 276
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=4.6e-15 Score=113.50 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceec
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKN 155 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~ 155 (408)
..++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|+ .|||..|. |+. +++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~--g~~--l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR--GRQ--IKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET--TEE--CEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC--CcE--EEE
Confidence 468999999999999999999999999999999875 34999999999999999999 89998876 664 444
Q ss_pred ccc
Q 046223 156 PYS 158 (408)
Q Consensus 156 ~~s 158 (408)
.++
T Consensus 80 ~~a 82 (89)
T 3ucg_A 80 IPK 82 (89)
T ss_dssp EET
T ss_pred EEc
Confidence 443
No 277
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=5.6e-15 Score=120.55 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=68.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....+++|||+|||.++++++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+ .+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~--~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD--GR--PM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS--SC--EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC--Cc--EE
Confidence 445678999999999999999999999999999999876 36899999999999999999999998875 66 35
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 107 ~V~~a~ 112 (124)
T 2kt5_A 107 DIQLVA 112 (124)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 555544
No 278
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.57 E-value=9.4e-15 Score=121.69 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=64.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
...+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--GRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET--TEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC--CEEE
Confidence 345689999999999999999999999999999999875 35999999999999999999999998876 6643
No 279
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=1.4e-15 Score=125.96 Aligned_cols=83 Identities=25% Similarity=0.356 Sum_probs=70.6
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 73 PLPPPSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 73 ~~p~~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
..++....+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++.|||..|.
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~-- 115 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-- 115 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS--
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 34455666789999999999999999999999999999999875 45899999999999999999999998876
Q ss_pred ccccceeccccC
Q 046223 148 QQSYGLKNPYSS 159 (408)
Q Consensus 148 gr~l~~~~~~s~ 159 (408)
|+ .|+|.|+.
T Consensus 116 g~--~l~V~~a~ 125 (135)
T 2lea_A 116 GR--ELRVQMAR 125 (135)
T ss_dssp SS--CCEEEECC
T ss_pred CE--EEEEEECC
Confidence 66 35555544
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-16 Score=128.07 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCcee--------e-----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKE--------L-----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG 292 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v-----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 292 (408)
.+.++|||+|||.++++++|+++|++||.|.. | +.++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34689999999999999999999999999987 5 2456779999999999999999999999999999
Q ss_pred eEEEEEEecCCCCC
Q 046223 293 KHVVIEFSRPGGHS 306 (408)
Q Consensus 293 ~~l~v~~a~~~~~~ 306 (408)
+.|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876543
No 281
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.57 E-value=1.4e-15 Score=112.49 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=64.3
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 230 TIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 230 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
+|||+|||.++++++|+++|++||.|..+. .++.++|||||+|.+.++|++|++ +++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999999999999883 346789999999999999999999 5999999999999875
No 282
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=116.58 Aligned_cols=73 Identities=12% Similarity=0.212 Sum_probs=66.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..+|||+|||+++|++||+++|+.| .|..|+ ..++++|||||+|.+.++|++|+ .|||..|+||.|+|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 787772 34778999999999999999999 6999999999999988864
No 283
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=3.8e-15 Score=119.91 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=59.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
....+|||+|||+++|+++|+++|++||+|..|.+... |||||+|.+.++|++||+.|||..|. |+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~--gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFR--SHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCC--CTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEEC--CcE
Confidence 35689999999999999999999999999999999854 99999999999999999999998876 553
No 284
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=3.1e-15 Score=116.27 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
....+.++|||+|||.++|+++|+++|++||.|..+.....++|||||+|.+.++|++|++.|||..|. |+. +++.
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~--l~v~ 86 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--GRS--VSLY 86 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEET--TEE--EEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--CeE--EEEE
Confidence 344578999999999999999999999999999888333366999999999999999999999998876 663 5555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
++.
T Consensus 87 ~a~ 89 (96)
T 1fjc_A 87 YTG 89 (96)
T ss_dssp ECS
T ss_pred EcC
Confidence 543
No 285
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=117.72 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCC-eEEEEEee------cCccEEEEEECCHHHHHHHHHHhc--Cccccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGE-VRGVQMER------LMEGIVTVHFYDLRHAEMAFKEIR--EQHMQLQQQS 150 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~-V~~v~~~~------~~kG~afV~F~~~~~A~~Ai~~ln--g~~i~~~gr~ 150 (408)
.+.++|||+|||.++|+++|+++|++||. |..|.+.. +++|||||+|.+.++|++|++.|+ +..|. |+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--g~- 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--GH- 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT--TB-
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec--CC-
Confidence 46789999999999999999999999998 99998872 569999999999999999999996 45654 66
Q ss_pred cceeccccC
Q 046223 151 YGLKNPYSS 159 (408)
Q Consensus 151 l~~~~~~s~ 159 (408)
.+++.|+.
T Consensus 83 -~l~V~~a~ 90 (109)
T 2dis_A 83 -QIAVDWAE 90 (109)
T ss_dssp -CCEEEESC
T ss_pred -eEEEEEcC
Confidence 45665554
No 286
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=5.8e-15 Score=112.42 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=63.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcc----C-------CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVF----G-------EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~----G-------~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
..+.++|||+|||.++|+++|+++|++| | .|.++++.+ ++|||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g~~~~-- 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQ-- 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTTCEET--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCCCEEC--
Confidence 3567999999999999999999999999 8 999998874 5999999999999999999 99998876
Q ss_pred ccccce
Q 046223 148 QQSYGL 153 (408)
Q Consensus 148 gr~l~~ 153 (408)
|+.|.+
T Consensus 79 g~~l~V 84 (87)
T 2hzc_A 79 GQSLKI 84 (87)
T ss_dssp TEECEE
T ss_pred CeEEEE
Confidence 664443
No 287
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=6.9e-15 Score=119.35 Aligned_cols=77 Identities=18% Similarity=0.394 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
...++|||+|| ++++++|+++|++||.|..|.. ..++|||||+|.+.++|++|++.|||..++|+.|+|.|++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34689999996 6999999999999999999864 37899999999999999999999999999999999999987653
No 288
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=119.83 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCC---ceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGP---VKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~---v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
....+|||+|||+++|+++|+++|+.||. |..|+ ..+.++|||||+|.+.++|++|++ |||..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45689999999999999999999999988 77662 237789999999999999999999 99999999999999
Q ss_pred EecCC
Q 046223 299 FSRPG 303 (408)
Q Consensus 299 ~a~~~ 303 (408)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98754
No 289
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=3.2e-15 Score=110.54 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=58.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
+|||+|||.++|+++|+++|++||.|..|.+.+ +++|||||+|.+.++|++|++ |+|..|. |+.|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~--g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN--NKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS--SCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC--CEEE
Confidence 589999999999999999999999999998875 348999999999999999998 9998876 6643
No 290
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.56 E-value=9e-15 Score=124.32 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...+.++|||+|||.++|+++|+++|++||+|..|.+.. .++|||||+|.+.++|++|++.|||..|. ++ .
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~--~ 110 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD--DR--I 110 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET--TE--E
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--Ce--E
Confidence 345679999999999999999999999999999999875 35899999999999999999999998876 66 4
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|+|.|+.
T Consensus 111 l~V~~a~ 117 (156)
T 1h2v_Z 111 IRTDWDA 117 (156)
T ss_dssp CEEEEES
T ss_pred EEEEECC
Confidence 5555554
No 291
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-15 Score=111.64 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=59.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
++|||+|||.++|+++|+++|++||+|..|.+.+ +++|||||+|.+.++|++|++.++ ..+. |+.+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~--g~~l~v~ 74 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD--SKTIDPK 74 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS--SCCCEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC--CEEEEEE
Confidence 4799999999999999999999999999998875 348999999999999999999888 5554 6644443
No 292
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.3e-14 Score=111.55 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...+.++|||+|| ++|+++|+++|++||+|..|.+. +++|||||+|.+.++|++|++.|||..|. |+ .|++.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~--~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVE--SV--QLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEET--TE--EEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeEC--Ce--EEEEEE
Confidence 3446789999996 99999999999999999999886 68999999999999999999999998875 66 456655
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 84 a~ 85 (97)
T 1x5p_A 84 AR 85 (97)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 293
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.1e-15 Score=113.07 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCc--eeCCeEEEEEEecCCC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQ--EIYGKHVVIEFSRPGG 304 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~--~~~g~~l~v~~a~~~~ 304 (408)
..++|||+|||.++++++|+++|++||.|..++....++|||||+|.+.++|++| ++. .+.|+.|+|.+++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 3589999999999999999999999999999976556899999999999999754 444 5589999999998765
Q ss_pred C
Q 046223 305 H 305 (408)
Q Consensus 305 ~ 305 (408)
.
T Consensus 80 ~ 80 (88)
T 1wf0_A 80 N 80 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=115.57 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=63.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe-ecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME-RLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~-~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
...+.++|||+|||.++|+++|+++|++||.|.-+... .+++|||||+|.+.++|++|++.|||..|. ++ .|++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE--GR--AIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET--TE--EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC--Ce--EEEEE
Confidence 44568999999999999999999999999988332221 146999999999999999999999998876 66 45555
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 554
No 295
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=4e-15 Score=116.81 Aligned_cols=77 Identities=9% Similarity=0.033 Sum_probs=63.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEe----ecCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQME----RLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~----~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
.....++|||+|||.++|+++|+++|++||.|..+.+. .+++|||||+|.+.++|++|++ |||..|. |+ .|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~--g~--~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF--GN--EI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT--TB--CC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC--Cc--EE
Confidence 34467899999999999999999999999988772111 2569999999999999999998 9998876 66 35
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.++.
T Consensus 88 ~V~~a~ 93 (101)
T 1fj7_A 88 KLEKPK 93 (101)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 555544
No 296
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=2.7e-15 Score=135.58 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCC--Cceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFG--PVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
...+|||+||++++|+++|+++|++|| .|++|+ .+++++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457999999999999999999999999 898883 4778899999999999999999999999999999999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 297
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.1e-14 Score=113.09 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=63.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....+.++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++. +..|. |+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~--g~~- 84 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID--GRW- 84 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET--TEE-
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC--CeE-
Confidence 4455678999999999999999999999999999999876 3489999999999999999983 54443 663
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
+++.++.
T Consensus 85 -l~v~~a~ 91 (103)
T 2cqg_A 85 -CDCKLPN 91 (103)
T ss_dssp -EEEECCC
T ss_pred -EEEEecC
Confidence 4554543
No 298
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=9.2e-15 Score=114.88 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....+.++|||+|||.++|+++|+++|+.|+.|..+.... +++|||||+|.+.++|++|++.|||..|. |+ .|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--g~--~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID--GN--KVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--TE--ECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC--Ce--EEE
Confidence 4456789999999999999999999999987554443221 45899999999999999999999998876 66 456
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.|+.
T Consensus 86 V~~a~ 90 (102)
T 2fc8_A 86 LDWAK 90 (102)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 65554
No 299
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=114.40 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=61.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG-VQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~-v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
.....+|||+|||+++||++|+++|+.||.|.. |.+.. +++|||||+|.+.++|++|++. ++..|. +|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~--gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG--HRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS--SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC--CcEEEE
Confidence 345789999999999999999999999999987 77754 5699999999999999999987 887765 674333
No 300
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=6e-15 Score=119.25 Aligned_cols=75 Identities=20% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGE---VRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~---V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++|||+|||+++||++|+++|+.||. |..|++.. +++|||||+|.+.++|++|++ |||..|. +|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~- 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG--HRY- 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET--TEE-
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC--CeE-
Confidence 446789999999999999999999999999 88888875 458999999999999999999 9998765 774
Q ss_pred ceecccc
Q 046223 152 GLKNPYS 158 (408)
Q Consensus 152 ~~~~~~s 158 (408)
|++.++
T Consensus 90 -i~V~~a 95 (118)
T 2db1_A 90 -IEVFKS 95 (118)
T ss_dssp -EEEEEE
T ss_pred -EEEEEC
Confidence 444443
No 301
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=118.77 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=65.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCe-EEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEV-RGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V-~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...+.++|||+|||+++|+++|+++|+.||.| ..|++++ +++|||||+|.+.++|++|++. |+..|. ||.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~--gr~-- 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN--GRE-- 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET--TEE--
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC--CeE--
Confidence 44567999999999999999999999999999 7788875 4699999999999999999986 887765 774
Q ss_pred eeccccC
Q 046223 153 LKNPYSS 159 (408)
Q Consensus 153 ~~~~~s~ 159 (408)
|++.++.
T Consensus 86 i~v~~a~ 92 (114)
T 2cpy_A 86 AFVHVVT 92 (114)
T ss_dssp EEEEEEC
T ss_pred EEEEECC
Confidence 4554443
No 302
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.1e-15 Score=117.55 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=64.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEee-cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEV----RGVQMER-LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V----~~v~~~~-~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..++++|||+|||.++|+++|+++|++||.| ..+++.. +++|||||+|.+.++|++|++.|||..|. |+ .|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--g~--~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY--GK--IL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS--SC--BC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--Cc--EE
Confidence 4467899999999999999999999999998 4555443 66999999999999999999999998875 66 45
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 98 ~v~~a~ 103 (115)
T 2cpx_A 98 VIEFGK 103 (115)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 665554
No 303
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=111.90 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=64.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
....++|||+|||.++|+++|+++|+.| .|..|++.+ +++|||||+|.+.++|++|++ |||..|. ||. ++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~--gr~--i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG--GRY--IE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET--TEE--EE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC--CcE--EE
Confidence 3467899999999999999999999999 899999876 348999999999999999999 9998876 673 45
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.++.
T Consensus 81 v~~a~ 85 (91)
T 2dgw_A 81 VFREK 85 (91)
T ss_dssp EEEES
T ss_pred EEECC
Confidence 54443
No 304
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=8.7e-14 Score=129.81 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
...++++|||+|||.++|+++|+++|++||.|.+|++....+|||||+|.+.++|.+|++.|||..|. .|+ .|++.|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~g~--~l~v~~ 279 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKIT-QNN--AMKISF 279 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeC-CCC--EEEEEE
Confidence 45568999999999999999999999999999999999766799999999999999999999998876 245 466666
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 43
No 305
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7.7e-15 Score=116.56 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=62.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
......+|||+|||+++||++|+++|+.| .|..|+|.. +++|||||+|.+.++|++|+ .+|+..|. ||.|.+
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~--gr~i~V 87 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI--QRYVEV 87 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET--TEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC--CeEEEE
Confidence 34456899999999999999999999999 899999875 46999999999999999999 69998875 774433
No 306
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.7e-15 Score=112.43 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccC
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~ 159 (408)
..+++|||+|||.++||++|+++|++||.|..|++.++++|||||+|.+.++|++ +++..+.+.++ .+++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~g~--~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIKGI--SVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEETTE--EEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeCCE--EEEEEecC
Confidence 4579999999999999999999999999999999988889999999999999975 45556655565 45555543
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=111.22 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEE-Eee-cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQ-MER-LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~-~~~-~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
..+++|||+|||+++|+++|+++|++||.|..|+ +.. ...|.|||+|.+.++|++|++.|||..|. |+. +++.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~--g~~--l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE--NFT--LKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS--SCB--CEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC--CcE--EEEEE
Confidence 4568999999999999999999999999999994 665 34667999999999999999999998876 673 55555
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 89 a~ 90 (96)
T 2e44_A 89 IP 90 (96)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 308
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.54 E-value=2.8e-15 Score=115.07 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=62.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPY 157 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~ 157 (408)
++|||+|||.++++++|+++|++||+|.+|.+.+ +++|||||+|.+.+ |++|++.|||..+. |+. +++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~--g~~--l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM--GRT--IRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS--SSS--CSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC--CeE--EEEEE
Confidence 6899999999999999999999999999999875 45899999999999 99999999998876 664 45544
Q ss_pred cC
Q 046223 158 SS 159 (408)
Q Consensus 158 s~ 159 (408)
+.
T Consensus 77 a~ 78 (90)
T 2ki2_A 77 AN 78 (90)
T ss_dssp C-
T ss_pred cC
Confidence 43
No 309
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=115.06 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=60.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....++|||+|||+++||++|+++|+.||.| .|++.+ +++|||||+|.+.++|++||+ +|+..|. +|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ--HRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS--SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC--CcEEEE
Confidence 4456899999999999999999999999954 888875 458999999999999999995 7987765 674433
No 310
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=1.2e-14 Score=126.12 Aligned_cols=78 Identities=27% Similarity=0.414 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
...++|||+||+..+++++|+++|++||.|..|. .++.++|||||+|.+.++|++|++.|||..|+|+.|+|+|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4568999999999999999999999999999883 246788999999999999999999999999999999999997
Q ss_pred CC
Q 046223 302 PG 303 (408)
Q Consensus 302 ~~ 303 (408)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 311
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.3e-14 Score=110.46 Aligned_cols=70 Identities=24% Similarity=0.431 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcC----C-------CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAF----G-------PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
.++|||+|||.++++++|+++|++| | .|.+++.. ..+|||||+|.+.++|++|+ .|||..++|+.|+
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 5899999999999999999999999 8 88888533 56999999999999999999 9999999999999
Q ss_pred EEE
Q 046223 297 IEF 299 (408)
Q Consensus 297 v~~ 299 (408)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 873
No 312
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=6.1e-15 Score=115.94 Aligned_cols=76 Identities=22% Similarity=0.387 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
..++|||+|||.++++++|+++|+.||.|..++ .++.++|||||+|.+.++|++|++ +|..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 358999999999999999999999999999883 266789999999999999999999 99999999999999976
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 313
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.54 E-value=6.7e-15 Score=121.62 Aligned_cols=72 Identities=19% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGE---VRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~---V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++|||+|||+++||++|+++|+.||. |..|++.+ +++|||||+|.+.++|++|++ |||..|. +|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--HRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS--SSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC--CEEE
Confidence 446789999999999999999999999999 78888875 458999999999999999999 9998876 7743
Q ss_pred ce
Q 046223 152 GL 153 (408)
Q Consensus 152 ~~ 153 (408)
.+
T Consensus 118 ~V 119 (136)
T 2hgl_A 118 EV 119 (136)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 314
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.1e-14 Score=118.84 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
...++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|+ .|||..|. |+. |+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~--g~~--l~ 108 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR--GRT--IK 108 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET--TEE--CE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC--CeE--EE
Confidence 3578999999999999999999999999999999875 34999999999999999999 79998876 663 55
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.++.
T Consensus 109 V~~a~ 113 (124)
T 2jwn_A 109 VLPKR 113 (124)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 55543
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3e-14 Score=110.22 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=59.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
....++|||+|||.++|+++|+++|++||.|.+|.+.+....||||+|.+.++|++|++ |||..|. |+.|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~--g~~l~ 75 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG--GHRLR 75 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEET--TEECC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC--CEEEE
Confidence 34578999999999999999999999999999984443222299999999999999999 9998876 66433
No 316
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=8.2e-15 Score=118.94 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCc----eee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPV----KEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v----~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
..+|||+|||+++|++||+++|+.||.| ..| ..+++++|||||+|.+.++|++|++. |+..|+||.|+|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 5899999999999999999999999975 344 24678899999999999999999995 99999999999998
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
+.++
T Consensus 102 a~~~ 105 (123)
T 2dha_A 102 STAA 105 (123)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 317
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.4e-14 Score=122.88 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=67.3
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec-----CccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL-----MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~-----~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
....++++|||+|||.++|+++|+++|++||.|..|.+... ++|||||+|.+.++|++||+.|||..|. |+.
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--g~~- 143 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--GQT- 143 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET--TEE-
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC--CEE-
Confidence 34456789999999999999999999999999999998863 4899999999999999999999998875 664
Q ss_pred ceeccccC
Q 046223 152 GLKNPYSS 159 (408)
Q Consensus 152 ~~~~~~s~ 159 (408)
|.|.|+.
T Consensus 144 -l~V~~a~ 150 (165)
T 1rk8_A 144 -IQVDWCF 150 (165)
T ss_dssp -CEEEESE
T ss_pred -EEEEEec
Confidence 5555543
No 318
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.53 E-value=3.1e-14 Score=121.90 Aligned_cols=77 Identities=27% Similarity=0.552 Sum_probs=71.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||.++++++|+++|+.||.|.+++ .++.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 58999999999999999999999999999883 3566789999999999999999999999999999999999976
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 83 ~~ 84 (168)
T 1b7f_A 83 GG 84 (168)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 319
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=116.69 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=65.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++. ++..|. |+ .|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~--g~--~l 98 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID--GR--VV 98 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET--TE--EE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC--CE--EE
Confidence 34568999999999999999999999999999999876 3589999999999999999987 887765 66 35
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.++.
T Consensus 99 ~V~~a~ 104 (116)
T 1x4b_A 99 EPKRAV 104 (116)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 555544
No 320
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.53 E-value=2.6e-14 Score=121.69 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=67.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....++|||+|||+++|+++|+++|+.||.|..|++.+ +++|||||+|.+.++|++|++.|||..|. |+ .|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~--~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD--GR--EL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--SS--EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--Ce--EE
Confidence 34578999999999999999999999999999999875 46999999999999999999999998875 67 45
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
++.|+.
T Consensus 143 ~v~~a~ 148 (158)
T 2kn4_A 143 RVQMAR 148 (158)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 555544
No 321
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=116.57 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=54.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee--------cCccEEEEEECCHHHHHHHHHHh
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER--------LMEGIVTVHFYDLRHAEMAFKEI 139 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~--------~~kG~afV~F~~~~~A~~Ai~~l 139 (408)
...+++|||+|||+++|+++|+++|++||+|. +.++. +++|||||+|.+.++|++|++.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 45678999999999999999999999999999 66653 45899999999999999999998
No 322
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.52 E-value=4.1e-14 Score=120.92 Aligned_cols=77 Identities=21% Similarity=0.465 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||.++++++|+++|+.||.|.+++ .++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 48999999999999999999999999999883 3677789999999999999999999999999999999999976
Q ss_pred CC
Q 046223 303 GG 304 (408)
Q Consensus 303 ~~ 304 (408)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 323
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=3.7e-14 Score=126.88 Aligned_cols=77 Identities=30% Similarity=0.378 Sum_probs=70.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
+.++|||+|||.++|+++|+++|++||.|.+|+ .++.++|||||+|.+.++|.+|++.+|+..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 458999999999999999999999999999883 467889999999999999999999999999999999999986
Q ss_pred CC
Q 046223 302 PG 303 (408)
Q Consensus 302 ~~ 303 (408)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 324
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=7.2e-15 Score=108.58 Aligned_cols=67 Identities=13% Similarity=0.268 Sum_probs=58.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
+|||+|||.++|+++|+++|++||.|..|.+.+ +++|||||+|.+.++|++|++. ++..|. |+.+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~--g~~l~v 72 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG--LSKCEI 72 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT--TBCCCE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC--CEEEEE
Confidence 599999999999999999999999999998865 4589999999999999999984 776654 664443
No 325
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=115.27 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=61.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCC---eEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGE---VRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~---V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
......+|||+|||+++|+++|+++|+.||. |..|++.. +++|||||+|.+.++|++|++ ++|..|. ||.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG--QRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS--SSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC--CeE
Confidence 3456789999999999999999999999998 88888875 468999999999999999999 9997765 674
No 326
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=117.97 Aligned_cols=76 Identities=13% Similarity=0.020 Sum_probs=62.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEE-EEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGV-QMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v-~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....++|||+|||+++|+++|+++|+.||.|..+ .+.. +++|||||+|.+.++|++||+ |||..|. ||. |
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--gr~--i 96 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG--NRF--I 96 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST--TSC--B
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC--CcE--E
Confidence 3456899999999999999999999999999773 3322 459999999999999999999 9998876 673 4
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
+|.++.
T Consensus 97 ~V~~a~ 102 (124)
T 1wel_A 97 QVHPIT 102 (124)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 554443
No 327
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.52 E-value=3.9e-15 Score=123.48 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=68.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
...+|||+|||+++|++||+++|++|| |.+|+ ..++++|||||+|.+.++|++|+ .+|+..|+|+.|+|.++..
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 458999999999999999999999999 66772 34778999999999999999999 7999999999999999876
Q ss_pred CCC
Q 046223 303 GGH 305 (408)
Q Consensus 303 ~~~ 305 (408)
...
T Consensus 123 ~~~ 125 (139)
T 2hgn_A 123 TGA 125 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 328
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=1.7e-14 Score=130.37 Aligned_cols=75 Identities=7% Similarity=0.060 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccC--CeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFG--EVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G--~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..++|||+||++++||++|+++|++|| .|.+|+|++ +++|||||+|.+.++|++||+.|||..|. ||. |
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~--Gr~--l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH--GQN--P 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT--TBC--C
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC--CEE--e
Confidence 577999999999999999999999999 999999876 45899999999999999999999998876 673 5
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
+|.++.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 555544
No 329
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4.7e-14 Score=114.44 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=64.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYS 158 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s 158 (408)
..++++|||+|| ++|+++|+++|++||+|..|.+. +++|||||+|.+.++|++|++.|||..|. |+ .+++.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~--g~--~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVE--SV--QLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCS--SC--BCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEC--Ce--EEEEEEe
Confidence 346889999996 79999999999999999999987 68999999999999999999999998875 66 3555555
Q ss_pred C
Q 046223 159 S 159 (408)
Q Consensus 159 ~ 159 (408)
.
T Consensus 109 ~ 109 (121)
T 2bz2_A 109 R 109 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=2.6e-14 Score=119.56 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=64.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEee--cCccEEEEEECCHHHHHHHHHHhcCccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG--------VQMER--LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~--------v~~~~--~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
..++++|||+|||+++|+++|+++|+.||.|.. |.+.. +++|||||+|.+.++|.+|++.|||..|. |
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF--G 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET--T
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC--C
Confidence 456789999999999999999999999999876 33332 67999999999999999999999998876 6
Q ss_pred cccceeccccC
Q 046223 149 QSYGLKNPYSS 159 (408)
Q Consensus 149 r~l~~~~~~s~ 159 (408)
+ .|+|.|+.
T Consensus 120 ~--~l~V~~a~ 128 (143)
T 3egn_A 120 K--PMVVQFAR 128 (143)
T ss_dssp E--ECEEEECC
T ss_pred c--EEEEEECC
Confidence 7 45555554
No 331
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.5e-14 Score=113.61 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=60.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 77 PSTGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 77 ~~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
......++|||+|||.++|+++|+++|++||.|..|++.+ +++|||||+|.+.++|++|++ +|..|. |+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~--g~~l 78 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH--GKKL 78 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET--TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC--CEEE
Confidence 3445678999999999999999999999999999999876 358999999999999999998 665554 5533
No 332
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.2e-13 Score=108.99 Aligned_cols=76 Identities=22% Similarity=0.238 Sum_probs=66.3
Q ss_pred CceEEEcCCCC-----CCcHHHHHHHHhcCCCceeecc------CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 228 QGTIVVFNLDS-----GVSSSTLKEIFQAFGPVKELRE------TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 228 ~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~~------~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
+++|+|.||-. +.++++|+++|++||.|.+|.. .+.++|||||+|.+.++|.+|++.|||+.++||.|.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 58999999963 2368999999999999999831 246799999999999999999999999999999999
Q ss_pred EEEecCC
Q 046223 297 IEFSRPG 303 (408)
Q Consensus 297 v~~a~~~ 303 (408)
|.++...
T Consensus 88 v~~a~~~ 94 (105)
T 2pe8_A 88 ACFYNLD 94 (105)
T ss_dssp EEECCHH
T ss_pred EEEcCHH
Confidence 9999753
No 333
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=3.1e-14 Score=115.83 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCce--ee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVK--EL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
....+|||+|||+++|+++|+++|+.| .|. .| ...++++|||||+|.+.++|++|++ +++..|+||.|+|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346899999999999999999999999 565 66 2347789999999999999999998 588999999999998
Q ss_pred ecC
Q 046223 300 SRP 302 (408)
Q Consensus 300 a~~ 302 (408)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 334
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=4.9e-14 Score=112.70 Aligned_cols=75 Identities=21% Similarity=0.421 Sum_probs=66.5
Q ss_pred ceEEEcCC----CCCCcHHHHHHHHhcCCCceee-----ccCCCCccEEEEEECC----HHH----HHHHHH--HhCCce
Q 046223 229 GTIVVFNL----DSGVSSSTLKEIFQAFGPVKEL-----RETPLKKHQRFIEFYD----VRD----AAKALK--EMNGQE 289 (408)
Q Consensus 229 ~~l~V~nL----p~~~t~~~L~~~F~~~G~v~~v-----~~~~~~~g~afV~F~~----~~~----A~~A~~--~l~g~~ 289 (408)
..|||+|| ++.+++++|+++|+.||+|.++ +.++.++|||||+|.+ .++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999 5788999999999996 333 888988 789999
Q ss_pred eCCeEEEEEEecCC
Q 046223 290 IYGKHVVIEFSRPG 303 (408)
Q Consensus 290 ~~g~~l~v~~a~~~ 303 (408)
|+|+.|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=6e-14 Score=121.61 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
....+++|||+|||.++++++|+++|++||.|..|.+.. .++|||||+|.+.++|++|++.|||..|. |+. |
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~--Gr~--l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD--GRP--M 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS--SSB--C
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC--CEE--E
Confidence 345678999999999999999999999999999999875 45899999999999999999999998876 664 5
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
+|.|+.
T Consensus 160 ~V~~a~ 165 (177)
T 2f3j_A 160 DIQLVA 165 (177)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 555544
No 336
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=1e-13 Score=136.93 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..+.++|||+||+.++|+++|+++|++||.|..|.|+. +++|||||+|.+.++|.+||+.|||..|. |+ .|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~--gr--~i 174 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID--GR--RV 174 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC--CE--EE
Confidence 44568999999999999999999999999999999875 35999999999999999999999998876 66 45
Q ss_pred eccccC
Q 046223 154 KNPYSS 159 (408)
Q Consensus 154 ~~~~s~ 159 (408)
.|.|+.
T Consensus 175 ~V~~a~ 180 (437)
T 3pgw_S 175 LVDVER 180 (437)
T ss_pred EEEEeC
Confidence 565554
No 337
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=9.7e-14 Score=118.43 Aligned_cols=76 Identities=28% Similarity=0.453 Sum_probs=69.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
++|||+|||.++|+++|+++|++||.|.+++ ..+.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999883 345678999999999999999999999999999999999997654
No 338
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.48 E-value=1.4e-14 Score=120.11 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=59.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
.....++|||+|||+++||++|+++|++|| |..|+|++ +++|||||+|.+.++|++|| .+|+..|. +|.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~--gR~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ--HRYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS--SCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC--CEEE
Confidence 344578999999999999999999999999 77888875 56999999999999999999 78997765 6743
No 339
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.48 E-value=7.1e-14 Score=113.68 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeE--EEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVR--GVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~--~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
....++|||+|||+++||++|+++|+.| .|. .|++.+ +++|||||+|.+.++|++|++ +++..|. ||.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~--gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIG--HRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBT--TBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEEC--CEEEE
Confidence 3457889999999999999999999999 577 788875 569999999999999999998 4676654 77433
No 340
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.48 E-value=4.5e-14 Score=127.24 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCC---------cHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCcee-----
Q 046223 225 GNNQGTIVVFNLDSGV---------SSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEI----- 290 (408)
Q Consensus 225 ~~~~~~l~V~nLp~~~---------t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~----- 290 (408)
....++|||+||+..+ ++++|+++|++||.|++|+.. .++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 3457999999999998 799999999999999999644 5799999999999999999999999999
Q ss_pred -------CCeEEEEEEecCCC
Q 046223 291 -------YGKHVVIEFSRPGG 304 (408)
Q Consensus 291 -------~g~~l~v~~a~~~~ 304 (408)
.|+.|.|+||+...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 341
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.7e-14 Score=115.89 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=58.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCe----EEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEV----RGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V----~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
....+|||+|||+++||++|+++|++||.| ..|+|.. +++|||||+|.+.++|++|++. |+..|. +|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG--KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS--SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC--CeE
Confidence 456899999999999999999999999976 5677764 4689999999999999999985 887664 663
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=3e-15 Score=120.67 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=66.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEE--------EEEee-----cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRG--------VQMER-----LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~--------v~~~~-----~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
..+.++|||+|||.++|+++|+++|++||.|.. |++.. +++|||||+|.+.++|++|++.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 77764 45899999999999999999999998876
Q ss_pred ccccccceeccccC
Q 046223 146 LQQQSYGLKNPYSS 159 (408)
Q Consensus 146 ~~gr~l~~~~~~s~ 159 (408)
|+ .|++.++.
T Consensus 84 --g~--~l~V~~a~ 93 (116)
T 2lcw_A 84 --GN--PIKVSFAT 93 (116)
Confidence 66 45555544
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=109.91 Aligned_cols=74 Identities=19% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccC---CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 227 NQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RET---PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 227 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~---~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
..++|||+|||+++++++|+++|++||.|..+ ..+ +.++|||||+|.+.++|++|++.|+ .++|+.|.+..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 35899999999999999999999999999833 122 5789999999999999999999995 37888888876
Q ss_pred ecC
Q 046223 300 SRP 302 (408)
Q Consensus 300 a~~ 302 (408)
+..
T Consensus 85 ~~~ 87 (114)
T 2dnl_A 85 SPT 87 (114)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 344
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.4e-13 Score=107.84 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCc-----------HHHHHHHHhcCCCceeec-cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCe
Q 046223 226 NNQGTIVVFNLDSGVS-----------SSTLKEIFQAFGPVKELR-ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK 293 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t-----------~~~L~~~F~~~G~v~~v~-~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 293 (408)
..+++|+|.||-.... +++|+++|++||.|..|. ....++|||||+|.+.++|++|++.|||..|+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 3469999999954432 589999999999999984 2335799999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 046223 294 HVVIEFSRPGG 304 (408)
Q Consensus 294 ~l~v~~a~~~~ 304 (408)
.|+|.++.++.
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998754
No 345
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=7.8e-14 Score=125.65 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=61.4
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccc
Q 046223 79 TGPTRTLVLSYVPGDV---------SETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHM 144 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~v---------te~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i 144 (408)
...+++|||+||+.++ +|++|+++|++||+|.+|+++. ++|||||+|.+.++|+.|+++|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5578999999999998 7999999999999999999884 799999999999999999999999998
No 346
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=7.9e-14 Score=132.29 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcC--CCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccc-ccccccee
Q 046223 78 STGPTRTLVLSY--VPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQL-QQQSYGLK 154 (408)
Q Consensus 78 ~~~~~rtlfV~n--Lp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~-~gr~l~~~ 154 (408)
...++++|||+| |+.++||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||+.+.. .|+.+.+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 356789999999 589999999999999999999998874 79999999999999999999999999842 35655566
Q ss_pred ccccCc
Q 046223 155 NPYSSG 160 (408)
Q Consensus 155 ~~~s~~ 160 (408)
+.|...
T Consensus 93 ~~~~~~ 98 (345)
T 3tht_A 93 LNFVEK 98 (345)
T ss_dssp EEECSS
T ss_pred EEEeec
Confidence 677653
No 347
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=2.3e-13 Score=117.14 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=65.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeec----CccEEEEEECCHHHHHHHHHHhcCcccccc-cccccee
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERL----MEGIVTVHFYDLRHAEMAFKEIREQHMQLQ-QQSYGLK 154 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~----~kG~afV~F~~~~~A~~Ai~~lng~~i~~~-gr~l~~~ 154 (408)
...++|||+|||.++|+++|+++|++||.|..|++.+. ++|||||+|.+.++|.+|++.|||..+..+ ++ .++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~--~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSS--PMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSS--CCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCC--CeE
Confidence 36789999999999999999999999999999998863 589999999999999999999999877532 35 344
Q ss_pred ccc
Q 046223 155 NPY 157 (408)
Q Consensus 155 ~~~ 157 (408)
+.|
T Consensus 171 V~~ 173 (175)
T 3nmr_A 171 VKF 173 (175)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 348
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.44 E-value=1.7e-13 Score=124.04 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 226 NNQGTIVVFNLDS-GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 226 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
..+++|||+|||. ++++++|+++|++||.|.+|+.....+|||||+|.+.++|++|++.|||..+.|+.|+|.+++...
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 3469999999999 999999999999999999996555558999999999999999999999999999999999998654
No 349
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.44 E-value=2.7e-13 Score=119.19 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=69.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEe
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFS 300 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a 300 (408)
...++|||+|||.++|+++|+++|+.||.|.+|+ .++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 3468999999999999999999999999999883 3567899999999999999999985 999999999999998
Q ss_pred cCCC
Q 046223 301 RPGG 304 (408)
Q Consensus 301 ~~~~ 304 (408)
....
T Consensus 90 ~~~~ 93 (196)
T 1l3k_A 90 VSRE 93 (196)
T ss_dssp CC--
T ss_pred cCcc
Confidence 7543
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=4.2e-13 Score=105.78 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=64.2
Q ss_pred CCCCCEEEEcCCCC-----CCCHHHHHHHhhccCCeEEEEEee------cCccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 79 TGPTRTLVLSYVPG-----DVSETIVRRDLEVFGEVRGVQMER------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 79 ~~~~rtlfV~nLp~-----~vte~~L~~~F~~~G~V~~v~~~~------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
..++++|+|.||-. +-++++|+++|++||.|.+|.+.+ +++|||||+|.+.++|.+|++.|||..+.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-- 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG-- 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--
Confidence 35689999999952 237899999999999999999875 35899999999999999999999999886
Q ss_pred ccccceeccccC
Q 046223 148 QQSYGLKNPYSS 159 (408)
Q Consensus 148 gr~l~~~~~~s~ 159 (408)
|| .+++.|+.
T Consensus 83 Gr--~i~v~~a~ 92 (105)
T 2pe8_A 83 GR--VVKACFYN 92 (105)
T ss_dssp TE--ECEEEECC
T ss_pred Cc--EEEEEEcC
Confidence 77 45555544
No 351
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=1.7e-13 Score=120.83 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=71.4
Q ss_pred CceEEEcCCCC-CCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCC
Q 046223 228 QGTIVVFNLDS-GVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGG 304 (408)
Q Consensus 228 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 304 (408)
+++|||+|||. ++++++|+++|+.||.|.+|+.....+|||||+|.+.++|++|++.|||..+.|+.|+|.+++...
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 58999999999 999999999999999999996555558999999999999999999999999999999999998654
No 352
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.43 E-value=2.5e-13 Score=121.26 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=68.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeecc-----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRE-----TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~-----~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||.++|+++|+++|+.||.|.+|+. ++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 489999999999999999999999999999842 567899999999999999999999999999999999988765
Q ss_pred C
Q 046223 303 G 303 (408)
Q Consensus 303 ~ 303 (408)
.
T Consensus 108 ~ 108 (216)
T 2qfj_A 108 I 108 (216)
T ss_dssp C
T ss_pred c
Confidence 4
No 353
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.41 E-value=6.2e-13 Score=122.72 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
...++|||+|||.++|+++|+++|+.||.|..|.. ..++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 44589999999999999999999999999999964 467999999999999999999999999999999999999753
No 354
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.41 E-value=5.1e-13 Score=117.41 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=67.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
.++|||+|||.++++++|+++|++||.|..|+ ..+..+|||||+|.+.++|.+|++.++ ..++|+.|.|.+++.-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 48999999999999999999999999999883 346789999999999999999998654 5999999999997654
No 355
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=2.9e-13 Score=116.87 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhcCCCceee----ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 226 NNQGTIVVFNLDSGVSSSTLKEIFQAFGPVKEL----RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 226 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v----~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
...++|||+|||.++++++|+++|+.||.+..+ ..++.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 446999999999999999999999999876552 3567789999999999999999995 99999999999999997
Q ss_pred CCC
Q 046223 302 PGG 304 (408)
Q Consensus 302 ~~~ 304 (408)
+..
T Consensus 90 ~~~ 92 (175)
T 1fje_B 90 GRD 92 (175)
T ss_dssp CSS
T ss_pred Ccc
Confidence 654
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.2e-13 Score=108.91 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=58.5
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhccCCeEEEEEee-----cCccEEEEEECC----HHH----HHHHHH--HhcCcc
Q 046223 83 RTLVLSYV----PGDVSETIVRRDLEVFGEVRGVQMER-----LMEGIVTVHFYD----LRH----AEMAFK--EIREQH 143 (408)
Q Consensus 83 rtlfV~nL----p~~vte~~L~~~F~~~G~V~~v~~~~-----~~kG~afV~F~~----~~~----A~~Ai~--~lng~~ 143 (408)
..|||+|| ++.++|++|+++|+.||+|.++.++. .++|||||+|.| .++ |.+|++ .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999988875 569999999996 433 888988 789988
Q ss_pred cccccccccee
Q 046223 144 MQLQQQSYGLK 154 (408)
Q Consensus 144 i~~~gr~l~~~ 154 (408)
|. ||.|.+.
T Consensus 83 I~--Gr~irV~ 91 (136)
T 2j8a_A 83 IM--GFKFEVI 91 (136)
T ss_dssp ET--TEEEEEE
T ss_pred ec--CcEEEEE
Confidence 76 7744444
No 357
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=1.6e-12 Score=102.48 Aligned_cols=77 Identities=19% Similarity=0.360 Sum_probs=65.0
Q ss_pred CCceEEEcCCC--CCC--------cHHHHHHHHhcCCCceeeccC-------CCCccEEEEEECCHHHHHHHHHHhCCce
Q 046223 227 NQGTIVVFNLD--SGV--------SSSTLKEIFQAFGPVKELRET-------PLKKHQRFIEFYDVRDAAKALKEMNGQE 289 (408)
Q Consensus 227 ~~~~l~V~nLp--~~~--------t~~~L~~~F~~~G~v~~v~~~-------~~~~g~afV~F~~~~~A~~A~~~l~g~~ 289 (408)
++++|.|.|+= ..+ .++||++.|++||.|.+|... +.++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 35899999983 233 247999999999999999321 2568999999999999999999999999
Q ss_pred eCCeEEEEEEecCC
Q 046223 290 IYGKHVVIEFSRPG 303 (408)
Q Consensus 290 ~~g~~l~v~~a~~~ 303 (408)
++||.|+|.|+...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998654
No 358
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.37 E-value=1.1e-12 Score=112.76 Aligned_cols=74 Identities=23% Similarity=0.394 Sum_probs=66.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcC----C-------CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAF----G-------PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~----G-------~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
.++|||+|||.++|+++|+++|++| | .|.++. .+.++|||||+|.+.++|++|+ .|||..+.|+.|+
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~-~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEE-EETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeE-ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 5899999999999999999999999 6 555554 4567999999999999999999 8999999999999
Q ss_pred EEEecCC
Q 046223 297 IEFSRPG 303 (408)
Q Consensus 297 v~~a~~~ 303 (408)
|.+++..
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9987654
No 359
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.37 E-value=1.1e-12 Score=115.32 Aligned_cols=75 Identities=21% Similarity=0.340 Sum_probs=66.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCC-----------CceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFG-----------PVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G-----------~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
.++|||+|||.++|+++|+++|+.|| .|.++. .+.++|||||+|.+.++|++|+ .|||..|.|+.|+
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~-~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ-INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEE-EETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeE-ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 58999999999999999999999994 455543 4577999999999999999999 7999999999999
Q ss_pred EEEecCCC
Q 046223 297 IEFSRPGG 304 (408)
Q Consensus 297 v~~a~~~~ 304 (408)
|.+++...
T Consensus 82 v~~~~~~~ 89 (198)
T 2yh0_A 82 IRRPHDYQ 89 (198)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99886543
No 360
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.36 E-value=1.1e-12 Score=112.11 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=66.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec-----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|||+|||.++|+++|+++|+.||.|.+++ .++.++|||||+|.+.++|++|++. +..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 48999999999999999999999999999983 4577899999999999999999984 6789999999998865
Q ss_pred C
Q 046223 303 G 303 (408)
Q Consensus 303 ~ 303 (408)
.
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 3
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.5e-12 Score=102.76 Aligned_cols=78 Identities=13% Similarity=0.248 Sum_probs=63.6
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHhhccCCeEEEEEee-cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 78 STGPTRTLVLSYVPGDVS-----------ETIVRRDLEVFGEVRGVQMER-LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vt-----------e~~L~~~F~~~G~V~~v~~~~-~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
...++++|+|.||-...+ +++|+++|++||.|..|.|.. .++|||||+|.+.++|++|++.|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445789999999944332 689999999999999997642 56999999999999999999999998876
Q ss_pred ccccccceeccccC
Q 046223 146 LQQQSYGLKNPYSS 159 (408)
Q Consensus 146 ~~gr~l~~~~~~s~ 159 (408)
||. +++.|+.
T Consensus 91 --gr~--l~v~~a~ 100 (112)
T 2dit_A 91 --GRQ--ITAQAWD 100 (112)
T ss_dssp --TEE--CEEEECC
T ss_pred --CcE--EEEEEeC
Confidence 774 5555543
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.4e-12 Score=114.67 Aligned_cols=70 Identities=21% Similarity=0.281 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccccce
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGL 153 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~ 153 (408)
..++|||+|||.++|+++|+++|++||.|..|++.+ .++|||||+|.+.++|++|++.++ ..| +|+.|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V 181 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLI 181 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEE
Confidence 468999999999999999999999999999999885 468999999999999999998654 344 4774433
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.1e-12 Score=98.89 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCCCC
Q 046223 238 SGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPGGH 305 (408)
Q Consensus 238 ~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 305 (408)
..+++++|+++|++||.|.+|+..+.++|||||+|.+.++|++|++.+++ +.|+.|+|+|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 46899999999999999999977678999999999999999999998655 5799999999987653
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=5.1e-13 Score=105.18 Aligned_cols=68 Identities=25% Similarity=0.373 Sum_probs=58.0
Q ss_pred EcCCCCCCcHHHHHHHH------------hcCCCceeec----cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 233 VFNLDSGVSSSTLKEIF------------QAFGPVKELR----ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 233 V~nLp~~~t~~~L~~~F------------~~~G~v~~v~----~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
+.||+..+++++|++.| ++||.|.+|. ..+.++|||||+|.+.++|.+|++.|||+.++||.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56677777777776666 9999999993 2346799999999999999999999999999999999
Q ss_pred EEEe
Q 046223 297 IEFS 300 (408)
Q Consensus 297 v~~a 300 (408)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=4.2e-12 Score=102.03 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=64.4
Q ss_pred CceEEEcCCCC-----CCcHHHHHHHHhcCCCceeec-----c----CCCCccEEEEEECCHHHHHHHHHHhCCceeCCe
Q 046223 228 QGTIVVFNLDS-----GVSSSTLKEIFQAFGPVKELR-----E----TPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGK 293 (408)
Q Consensus 228 ~~~l~V~nLp~-----~~t~~~L~~~F~~~G~v~~v~-----~----~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~ 293 (408)
+++|+|.|+-. +-.++||++.|++||.|.+|. . ++.++|++||+|.+.++|.+|++.|||+.++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 48999999942 224789999999999999882 1 234579999999999999999999999999999
Q ss_pred EEEEEEecC
Q 046223 294 HVVIEFSRP 302 (408)
Q Consensus 294 ~l~v~~a~~ 302 (408)
.|+|.|+..
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999999865
No 366
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.32 E-value=2.9e-12 Score=100.97 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=63.8
Q ss_pred CCCCCEEEEcCC--CCCCC--------HHHHHHHhhccCCeEEEEEee-------cCccEEEEEECCHHHHHHHHHHhcC
Q 046223 79 TGPTRTLVLSYV--PGDVS--------ETIVRRDLEVFGEVRGVQMER-------LMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 79 ~~~~rtlfV~nL--p~~vt--------e~~L~~~F~~~G~V~~v~~~~-------~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
..+++.|.|.|+ +.++. +++|++.|++||.|.+|++.+ +++|+|||+|.+.++|++|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 457899999998 44443 368999999999999999875 2489999999999999999999999
Q ss_pred ccccccccccceeccccC
Q 046223 142 QHMQLQQQSYGLKNPYSS 159 (408)
Q Consensus 142 ~~i~~~gr~l~~~~~~s~ 159 (408)
+.+. || .|++.|..
T Consensus 82 ~~f~--GR--~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFA--NR--VVVTKYCD 95 (105)
T ss_dssp CEET--TE--ECEEEEEC
T ss_pred CEeC--CC--EEEEEEeC
Confidence 9886 77 45555543
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=3.9e-12 Score=120.66 Aligned_cols=75 Identities=25% Similarity=0.434 Sum_probs=65.1
Q ss_pred CCCceEEEcC--CCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeC---Ce--EEEEE
Q 046223 226 NNQGTIVVFN--LDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY---GK--HVVIE 298 (408)
Q Consensus 226 ~~~~~l~V~n--Lp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~--~l~v~ 298 (408)
.++++|||+| |++.+|+++|+++|++||+|.+|... .+||||||+|.+.++|++|++.|||+.+. |+ .|.|.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 3468999999 57899999999999999999998643 47999999999999999999999999883 45 57778
Q ss_pred Eec
Q 046223 299 FSR 301 (408)
Q Consensus 299 ~a~ 301 (408)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.29 E-value=1.5e-11 Score=98.05 Aligned_cols=77 Identities=12% Similarity=0.119 Sum_probs=64.2
Q ss_pred CceEEEcCCCCCC----------cHHHHHHHHhcCCCceeeccC-CCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEE
Q 046223 228 QGTIVVFNLDSGV----------SSSTLKEIFQAFGPVKELRET-PLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVV 296 (408)
Q Consensus 228 ~~~l~V~nLp~~~----------t~~~L~~~F~~~G~v~~v~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~ 296 (408)
+++|.|.|+=... .++||++.|++||.|.+|... ...+|+|||+|.+.++|.+|++.|||++++||.|+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~ 86 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT 86 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 5889999884321 246889999999999999432 23589999999999999999999999999999999
Q ss_pred EEEecCCC
Q 046223 297 IEFSRPGG 304 (408)
Q Consensus 297 v~~a~~~~ 304 (408)
|.|+....
T Consensus 87 v~~~~~~~ 94 (114)
T 3s6e_A 87 AAYVPLPT 94 (114)
T ss_dssp EEEECHHH
T ss_pred EEEEcHHH
Confidence 99996543
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3e-11 Score=93.96 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=58.1
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccccccccee
Q 046223 82 TRTLVLSYVP-------GDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLK 154 (408)
Q Consensus 82 ~rtlfV~nLp-------~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~ 154 (408)
...|-|.-.. .++||++|+++|++||+|..|.+.++++|||||+|.+.++|++|++.+++. .++. |+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~----~g~~--l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGL----VDNP--LK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBC----SSSB--CE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCC----CCCe--EE
Confidence 4566666543 468999999999999999999998889999999999999999999986652 2563 55
Q ss_pred ccccC
Q 046223 155 NPYSS 159 (408)
Q Consensus 155 ~~~s~ 159 (408)
+.|+.
T Consensus 84 V~~a~ 88 (100)
T 2d9o_A 84 ISWLE 88 (100)
T ss_dssp EECSS
T ss_pred EEEcc
Confidence 55544
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=3.7e-12 Score=100.21 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=52.6
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCeEEEEEee----cCccEEEEEECCHHHHHHHHHHhcCccccccccc
Q 046223 87 LSYVPGDVSETIVRRDL------------EVFGEVRGVQMER----LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQS 150 (408)
Q Consensus 87 V~nLp~~vte~~L~~~F------------~~~G~V~~v~~~~----~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~ 150 (408)
+.||+.++++++|++.| ++||.|.+|.+.+ +++|||||+|.+.++|++|++.|||..+. ||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~--Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN--GQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET--TEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC--CEE
Confidence 55677777888777666 9999999999986 35999999999999999999999999876 774
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.21 E-value=3e-11 Score=97.03 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=61.6
Q ss_pred CCCEEEEcCCC--CCC---CHHHHHHHhhccCCeEEEEEeec---------CccEEEEEECCHHHHHHHHHHhcCccccc
Q 046223 81 PTRTLVLSYVP--GDV---SETIVRRDLEVFGEVRGVQMERL---------MEGIVTVHFYDLRHAEMAFKEIREQHMQL 146 (408)
Q Consensus 81 ~~rtlfV~nLp--~~v---te~~L~~~F~~~G~V~~v~~~~~---------~kG~afV~F~~~~~A~~Ai~~lng~~i~~ 146 (408)
++++|+|.|+- .++ -++||++.|++||.|.+|++.+. ++|+|||+|.+.++|.+|++.|||+.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 68999999993 222 36889999999999999998762 2599999999999999999999999876
Q ss_pred cccccceeccccC
Q 046223 147 QQQSYGLKNPYSS 159 (408)
Q Consensus 147 ~gr~l~~~~~~s~ 159 (408)
|| .|++.|..
T Consensus 98 -GR--~i~v~~~~ 107 (118)
T 3ue2_A 98 -GR--KVVAEVYD 107 (118)
T ss_dssp -TE--ECEEEEEC
T ss_pred -Cc--EEEEEEcC
Confidence 77 45555543
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.16 E-value=8.2e-11 Score=93.83 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=61.4
Q ss_pred CCCCEEEEcCCC--CCC--------CHHHHHHHhhccCCeEEEEEeec-CccEEEEEECCHHHHHHHHHHhcCccccccc
Q 046223 80 GPTRTLVLSYVP--GDV--------SETIVRRDLEVFGEVRGVQMERL-MEGIVTVHFYDLRHAEMAFKEIREQHMQLQQ 148 (408)
Q Consensus 80 ~~~rtlfV~nLp--~~v--------te~~L~~~F~~~G~V~~v~~~~~-~kG~afV~F~~~~~A~~Ai~~lng~~i~~~g 148 (408)
.++++|.+.|+= .+. -++||++.|++||.|.+|.+.+. .+|+|||+|.+.++|++|++.|||+.+. |
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--G 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET--T
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC--C
Confidence 358899999982 221 23478999999999999999874 4899999999999999999999999876 7
Q ss_pred cccceeccccC
Q 046223 149 QSYGLKNPYSS 159 (408)
Q Consensus 149 r~l~~~~~~s~ 159 (408)
| .+++.|..
T Consensus 83 R--~i~v~~~~ 91 (114)
T 3s6e_A 83 K--MITAAYVP 91 (114)
T ss_dssp E--ECEEEEEC
T ss_pred E--EEEEEEEc
Confidence 7 45555543
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=8.4e-10 Score=82.63 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=59.4
Q ss_pred CceEEEcCCCC----CCcH----HHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 228 QGTIVVFNLDS----GVSS----STLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 228 ~~~l~V~nLp~----~~t~----~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
..||+|.-.+. ++-+ .+|.+.|+.||+|..++... +.+||+|.+.++|.+|++ |||..++||.|+|++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 37788876652 3333 67899999999999997443 338999999999999999 999999999999999
Q ss_pred ecCC
Q 046223 300 SRPG 303 (408)
Q Consensus 300 a~~~ 303 (408)
+++.
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.3e-09 Score=87.13 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=59.6
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhccCCeEEEEEeecCccEEEEEECC-HHHHHHHHHHhcCcccccccc
Q 046223 79 TGPTRTLVLSYVPGD-VSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYD-LRHAEMAFKEIREQHMQLQQQ 149 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~-vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~-~~~A~~Ai~~lng~~i~~~gr 149 (408)
-..+..|||+||+.+ +++++|+++|++||+|..|.+.+ ..-.|||+|.+ .++|..|++.|+...+.+++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~-g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR-GAKEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT-TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 345788999999999 99999999999999999999985 44479999999 899999999997554444454
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.2e-09 Score=87.21 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred CCceEEEcCCCCC-CcHHHHHHHHhcCCCceeeccCCCCccEEEEEECC-HHHHHHHHHHhC--CceeCCeEEEEEEec
Q 046223 227 NQGTIVVFNLDSG-VSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYD-VRDAAKALKEMN--GQEIYGKHVVIEFSR 301 (408)
Q Consensus 227 ~~~~l~V~nLp~~-~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~-~~~A~~A~~~l~--g~~~~g~~l~v~~a~ 301 (408)
.+..|+|+||+.. +++++|+++|+.||.|..|... .....|||+|.+ .++|.+|++.|+ |..|.|..++++...
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 3689999999999 9999999999999999999643 345579999999 899999999995 788999988888764
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=9.6e-09 Score=77.25 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=58.1
Q ss_pred CceEEEcCCCCC-----CcH----HHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEE
Q 046223 228 QGTIVVFNLDSG-----VSS----STLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIE 298 (408)
Q Consensus 228 ~~~l~V~nLp~~-----~t~----~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~ 298 (408)
..||+|.-++.. +-+ .+|.+.|+.||+|..++... +-+||+|.+.++|.+|++ |||..++||.|+|+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQMLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TEEEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---CcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 488999887643 222 56899999999999886442 229999999999999999 99999999999999
Q ss_pred EecC
Q 046223 299 FSRP 302 (408)
Q Consensus 299 ~a~~ 302 (408)
+..+
T Consensus 91 ~k~~ 94 (95)
T 1ufw_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 7543
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=8.3e-09 Score=77.25 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=54.3
Q ss_pred CCCEEEEcCCC----CCCCH----HHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 81 PTRTLVLSYVP----GDVSE----TIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 81 ~~rtlfV~nLp----~~vte----~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
+..||+|.-.+ .++-. .+|.+.|.+||+|..|++.. +.+||+|.+.++|.+|++ |||..+. ||.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~--Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELL--NRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEET--TEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeC--CeEEE
Confidence 45688888776 23434 56899999999999999984 449999999999999998 9998876 77444
Q ss_pred ee
Q 046223 153 LK 154 (408)
Q Consensus 153 ~~ 154 (408)
++
T Consensus 80 V~ 81 (91)
T 2dnr_A 80 IA 81 (91)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=1.3e-08 Score=91.09 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHhcCCCceeec---------cCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 239 GVSSSTLKEIFQAFGPVKELR---------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v~---------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
.-.+++|++.|++||.|.++. .++.++|++||+|.+.++|.+|++.|||+.++||.|.+.|+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 345789999999999999883 23378899999999999999999999999999999999998643
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=2.3e-08 Score=75.23 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=54.6
Q ss_pred CCCEEEEcCCCCC-----CCH----HHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccccccccc
Q 046223 81 PTRTLVLSYVPGD-----VSE----TIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSY 151 (408)
Q Consensus 81 ~~rtlfV~nLp~~-----vte----~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l 151 (408)
+..||+|.-++.+ +-. .+|.+.|.+||+|..|++... -+||+|.+.++|.+||+ |+|..+. ||.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d---~~fVtF~d~~sAl~AI~-ldG~~v~--Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG---QMLVTFADSHSALSVLD-VDGMKVK--GRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT---EEEEECSCSHHHHHHHH-GGGSEET--TEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC---cEEEEEcChHHHHHHHh-cCCeeeC--CeEE
Confidence 4668999988743 222 458899999999999999843 39999999999999998 9998876 7754
Q ss_pred cee
Q 046223 152 GLK 154 (408)
Q Consensus 152 ~~~ 154 (408)
+++
T Consensus 88 ~V~ 90 (95)
T 1ufw_A 88 KIS 90 (95)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=2.7e-07 Score=82.56 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=56.8
Q ss_pred CCEEEEcCC-----CCCCCHHHHHHHhhccCCeEEEEEee---------cCccEEEEEECCHHHHHHHHHHhcCcccccc
Q 046223 82 TRTLVLSYV-----PGDVSETIVRRDLEVFGEVRGVQMER---------LMEGIVTVHFYDLRHAEMAFKEIREQHMQLQ 147 (408)
Q Consensus 82 ~rtlfV~nL-----p~~vte~~L~~~F~~~G~V~~v~~~~---------~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~ 147 (408)
++.+.+.|+ ..+-.+++|++.|++||+|.+|.+.+ .++|++||+|.+.++|++|++.|||+.+.
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-- 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-- 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--
Confidence 344555444 22345678999999999999998873 35899999999999999999999999876
Q ss_pred ccccceecccc
Q 046223 148 QQSYGLKNPYS 158 (408)
Q Consensus 148 gr~l~~~~~~s 158 (408)
||. +++.|.
T Consensus 202 gr~--i~~~~~ 210 (222)
T 3dxb_A 202 GRK--VVAEVY 210 (222)
T ss_dssp SSB--CEEEEC
T ss_pred CeE--EEEEEc
Confidence 774 555454
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=8.2e-07 Score=68.04 Aligned_cols=71 Identities=25% Similarity=0.275 Sum_probs=63.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcC-----CCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAF-----GPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEF 299 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~ 299 (408)
.++|-|-|||..+++..|+.+...+ |.|..+... ..-+-|+|+|.|...|.+|.-+|+|.+|.|++|++.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~-pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV-SDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE-TTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe-cCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4889999999999999999999999 999888432 3456699999999999999999999999999999864
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=4.2e-06 Score=64.13 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcc-----CCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVF-----GEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYG 152 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~-----G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~ 152 (408)
...|+|-+-|||.++++..|+.+.+.+ |.|+.|.+..+ .+=|+|+|.|...|-+|.=+|+|.+|. ||.|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~--gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQ--GKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEET--TEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeec--CeEEE
Confidence 347899999999999999999999999 99999988754 455999999999999999999999887 77433
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=4.2e-05 Score=58.45 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=61.2
Q ss_pred ceEEEcCCCCCC-c----HHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecCC
Q 046223 229 GTIVVFNLDSGV-S----SSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRPG 303 (408)
Q Consensus 229 ~~l~V~nLp~~~-t----~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 303 (408)
++|+|.||+.++ . .+.++++|..|+++...... ++-.-..|.|.+.++|.+|...||+..+.|++++|-|+.+.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 789999998755 2 36789999999988776322 23334689999999999999999999999999999999843
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=0.00034 Score=53.17 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhc-----cCCeEEEEEeecCccEEEEEECCHHHHHHHHHH
Q 046223 79 TGPTRTLVLSYVPGDVSETIVRRDLEV-----FGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKE 138 (408)
Q Consensus 79 ~~~~rtlfV~nLp~~vte~~L~~~F~~-----~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~ 138 (408)
....++|.|.|||.++.++.|.-+|+. =|+|.+|.... +-|+|+|.+.+.|++.++.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC
Confidence 345789999999999999999999998 25899988864 8899999999999999863
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.0016 Score=49.41 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=61.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcC-----CCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAF-----GPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSRP 302 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~-----G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 302 (408)
.++|.|.|||..++++.|+-+|++- |+|..+...+ +-|+|+|.+.+.|++.++. ....|.|..|.|.-.-+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 5899999999999999999999872 6788886443 7899999999999998763 34577888888877655
Q ss_pred CCCCCC
Q 046223 303 GGHSKK 308 (408)
Q Consensus 303 ~~~~~~ 308 (408)
....+-
T Consensus 84 ~~~~r~ 89 (104)
T 2dhx_A 84 RAPARL 89 (104)
T ss_dssp CCCCCC
T ss_pred CCcceE
Confidence 554433
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00038 Score=53.12 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCC-CH----HHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceecc
Q 046223 82 TRTLVLSYVPGDV-SE----TIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNP 156 (408)
Q Consensus 82 ~rtlfV~nLp~~v-te----~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~ 156 (408)
..+|+|.||+.++ +. +.++++|..|+++......+ +-.-..|.|.+.++|.+|...|++..+. |+ .+++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~--g~--~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFL--GK--EMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEET--TE--ECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceec--Cc--eeEEE
Confidence 4689999998876 32 46789999999999977764 5556799999999999999999999987 44 47776
Q ss_pred ccC
Q 046223 157 YSS 159 (408)
Q Consensus 157 ~s~ 159 (408)
|+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 655
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.18 E-value=0.0015 Score=49.00 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=53.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-------cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-------LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-------~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
..|.|++||+++||+++.+.++...++....... ..-.-|||.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4689999999999999999999998877665543 12457999999999999999999998765
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.18 E-value=0.00072 Score=50.74 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=44.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhc
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~ln 140 (408)
..++| ++|.++...||.++|+.||.|.--.+ .-.-|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 44566 99999999999999999995433222 46789999999999999999874
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.00088 Score=50.45 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=44.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhc
Q 046223 84 TLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIR 140 (408)
Q Consensus 84 tlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~ln 140 (408)
.++| ++|.++...||.++|+.|| .|.|..-.-.-|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 3455 9999999999999999999 444444457889999999999999999875
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.98 E-value=0.0026 Score=47.77 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=45.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMN 286 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~ 286 (408)
...++| +.|..+...||.++|+.||.|.--. .....|||.|.+.+.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~W---idDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISW---IDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEE---EETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEE---EcCCeEEEEecCHHHHHHHHHhcc
Confidence 366777 9999999999999999998553222 235679999999999999999774
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.92 E-value=0.0025 Score=50.01 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=57.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhCCceeCC-eEEEEEEe
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYG-KHVVIEFS 300 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-~~l~v~~a 300 (408)
..-|.|-+.+... ...|.+.|++||+|.+... .....+-.|.|.+..+|++||. .||..++| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4788888998875 5678889999999998864 3467899999999999999998 79999985 55666654
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.75 E-value=0.00069 Score=66.33 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHH
Q 046223 81 PTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFK 137 (408)
Q Consensus 81 ~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~ 137 (408)
..|+|||. .+..+++.+|.++|++||.|.++.+.+...-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 46889998 799999999999999999999999987667799999999999997764
No 393
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.72 E-value=0.0057 Score=45.76 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=51.0
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeec-------cCCCCccEEEEEECCHHHHHHHHHHhCCceeC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELR-------ETPLKKHQRFIEFYDVRDAAKALKEMNGQEIY 291 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~-------~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 291 (408)
.+|.|++||..+|++++.+.++.+..+.... .....-.-|+|.|.+.+++..-.+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999887765441 11122346999999999999999999998764
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.43 E-value=0.0026 Score=47.92 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=44.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhC
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMN 286 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~ 286 (408)
..++| +.|..+...||.++|+.||.|.--+ .....|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~W---idDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISW---IDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEE---EETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEE---EcCCeEEEEecCHHHHHHHHHhcc
Confidence 55666 9999999999999999999543222 235679999999999999999875
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.41 E-value=0.0081 Score=47.13 Aligned_cols=65 Identities=8% Similarity=0.056 Sum_probs=53.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 78 STGPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 78 ~~~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
.....+.|-|-+.|... -..|...|++||+|.+.... ....+-.|.|.+..+|++|+. .||+.|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 34456789999999885 56778889999999998763 467899999999999999996 6887764
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.91 E-value=0.02 Score=45.57 Aligned_cols=71 Identities=21% Similarity=0.194 Sum_probs=54.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhcCCCceee-ccCC------------------CCccEEEEEECCHHHHHHHHHHhCCce
Q 046223 229 GTIVVFNLDSGVSSSTLKEIFQAFGPVKEL-RETP------------------LKKHQRFIEFYDVRDAAKALKEMNGQE 289 (408)
Q Consensus 229 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-~~~~------------------~~~g~afV~F~~~~~A~~A~~~l~g~~ 289 (408)
.-|.|-+.|...+ ..+.+.|++||.|.+- .... ...++..|+|++..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 5577778876654 5677889999999873 1110 135678999999999999998 89999
Q ss_pred eCCeEEEEEEec
Q 046223 290 IYGKHVVIEFSR 301 (408)
Q Consensus 290 ~~g~~l~v~~a~ 301 (408)
|+|.-|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887764
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.68 E-value=0.019 Score=43.22 Aligned_cols=66 Identities=6% Similarity=0.048 Sum_probs=50.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEee-------cCccEEEEEECCHHHHHHHHHHhcCcccc
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMER-------LMEGIVTVHFYDLRHAEMAFKEIREQHMQ 145 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~-------~~kG~afV~F~~~~~A~~Ai~~lng~~i~ 145 (408)
..+-.|.|+.||+.+||+++.+.++..=++....... ..-.-|||.|.+.++...-.+.++|..+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 3466899999999999999988887765543322221 11356999999999999999999998765
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.60 E-value=0.006 Score=59.72 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=42.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHH
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALK 283 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~ 283 (408)
.++|+|. .+..+++.+|.+.|++||.|.++........||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 3889998 688999999999999999999996555566799999999999997754
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.22 E-value=0.042 Score=41.37 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=51.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeec------cCC-CCccEEEEEECCHHHHHHHHHHhCCceeCC-----eEE
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELR------ETP-LKKHQRFIEFYDVRDAAKALKEMNGQEIYG-----KHV 295 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~------~~~-~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-----~~l 295 (408)
+-+|.|+.||+.+||+++.+.++..=++.... ..+ ..-.-|+|.|.+.++...-.+..+|..+-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 46899999999999999988877654432221 011 112348999999999999999999987642 244
Q ss_pred EEEEe
Q 046223 296 VIEFS 300 (408)
Q Consensus 296 ~v~~a 300 (408)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.18 E-value=0.84 Score=45.34 Aligned_cols=56 Identities=11% Similarity=0.226 Sum_probs=46.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
...++|+ ++..+...+|.++|+.||.|. | ..-+...|||.|.+.+.|..++++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V--~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-I--SWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-E--EECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-E--EEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 3567777 899999999999999999543 3 333677899999999999999998854
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.13 E-value=0.29 Score=38.83 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=45.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhccCCeEE-EEEee------------------cCccEEEEEECCHHHHHHHHHHhcCc
Q 046223 82 TRTLVLSYVPGDVSETIVRRDLEVFGEVRG-VQMER------------------LMEGIVTVHFYDLRHAEMAFKEIREQ 142 (408)
Q Consensus 82 ~rtlfV~nLp~~vte~~L~~~F~~~G~V~~-v~~~~------------------~~kG~afV~F~~~~~A~~Ai~~lng~ 142 (408)
...|.|=+.|.+. ...+.+.|++||.|.+ +...+ ...+...|+|.+..+|.+|+. .||+
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3457777886655 4467788999999877 22110 136778999999999999996 7888
Q ss_pred ccc
Q 046223 143 HMQ 145 (408)
Q Consensus 143 ~i~ 145 (408)
.|.
T Consensus 85 ii~ 87 (132)
T 3p3d_A 85 VFN 87 (132)
T ss_dssp EET
T ss_pred EeC
Confidence 775
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.37 E-value=2.7 Score=41.64 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=44.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHhC
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEMN 286 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l~ 286 (408)
...++|+ ++..+...+|.++|+.||.|.-.+ .....|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~w---iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISW---IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEE---CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEE---EcCCeEEEEECCHHHHHHHHHHHH
Confidence 3566666 888999999999999999654323 345679999999999999999885
No 403
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=82.75 E-value=0.58 Score=24.75 Aligned_cols=14 Identities=50% Similarity=0.888 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCC
Q 046223 11 GNLDPRAQEFRPTT 24 (408)
Q Consensus 11 ~~~~~~a~~~~p~~ 24 (408)
.+|||.|-||+|-+
T Consensus 4 s~lnp~akef~pgv 17 (26)
T 1jgn_B 4 SNLNPNAKEFVPGV 17 (26)
T ss_dssp CSSCTTCCCCCTTS
T ss_pred ccCCcchhhcCCCc
Confidence 47999999999854
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=55.64 E-value=56 Score=23.65 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=44.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhcCCCceeeccCCCCccEEEEEECCHHHHHHHHHHh
Q 046223 228 QGTIVVFNLDSGVSSSTLKEIFQAFGPVKELRETPLKKHQRFIEFYDVRDAAKALKEM 285 (408)
Q Consensus 228 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~~~~~A~~A~~~l 285 (408)
++-|.|-|+|..+-..++.-.....|---.+. .-.|.|.|.|.+.++..-|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycd---yidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCD---YIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEE---ECSSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeee---eecCeeEEEecCChHHHHHHHHH
Confidence 57788999999998888877777777544443 23677999999999999999877
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=55.04 E-value=9.8 Score=26.61 Aligned_cols=62 Identities=11% Similarity=0.215 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHhcCCCceee--ccCCCCccEEEEEECCHHHHHHHHHHhCCceeCCeEEEEEEec
Q 046223 239 GVSSSTLKEIFQAFGPVKEL--RETPLKKHQRFIEFYDVRDAAKALKEMNGQEIYGKHVVIEFSR 301 (408)
Q Consensus 239 ~~t~~~L~~~F~~~G~v~~v--~~~~~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 301 (408)
.+...+|..++..-+.|..- -.......|.||+-.. +.|..+++.|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 46667787777766554322 1112345678888764 45788999999999999999988764
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.11 E-value=34 Score=24.81 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=39.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCccE--EEEEECCHHHHHHHHH
Q 046223 85 LVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEGI--VTVHFYDLRHAEMAFK 137 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG~--afV~F~~~~~A~~Ai~ 137 (408)
-|+=.+..+.+..+++..+++ || +|..|.......|+ |||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344445678999999999988 67 67778776544454 9999998888776544
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.97 E-value=1e+02 Score=22.32 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=47.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 80 GPTRTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 80 ~~~rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
....-|-|-|+|..+-..++.-.....|---.+..+ .|.|.|.|.+.++.+.|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHh
Confidence 455667789999999999988888888854445443 78999999999999999987643
No 408
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=39.11 E-value=15 Score=19.87 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCC
Q 046223 12 NLDPRAQEFRPT 23 (408)
Q Consensus 12 ~~~~~a~~~~p~ 23 (408)
+|-+-|+||+|.
T Consensus 5 ~LS~~ApeF~Ps 16 (26)
T 1jh4_B 5 KLSVNAPEFYPS 16 (26)
T ss_dssp CSSCCCSCCCCT
T ss_pred ccCcCCceeccC
Confidence 567779999985
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.21 E-value=62 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.3
Q ss_pred CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 108 EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 108 ~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
+|.+|.+...-.||.||++...++...+++...|
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 3666666556799999999999888888875554
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.15 E-value=36 Score=24.56 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=36.7
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCcc--EEEEEECCHHHHHHH
Q 046223 86 VLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEG--IVTVHFYDLRHAEMA 135 (408)
Q Consensus 86 fV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG--~afV~F~~~~~A~~A 135 (408)
|+=.+..+++..++++.+++ || +|..|......+| -|+|.+....+|...
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHH
Confidence 44445779999999999987 67 6777877664445 499999877766543
No 411
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=36.49 E-value=6.9 Score=31.74 Aligned_cols=28 Identities=11% Similarity=-0.054 Sum_probs=18.3
Q ss_pred HHHHHHhhccCCeEEEEEeecCccEEEEEEC
Q 046223 97 TIVRRDLEVFGEVRGVQMERLMEGIVTVHFY 127 (408)
Q Consensus 97 ~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~ 127 (408)
+|+.++|...|.|+... ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---CCCCeeEEeeC
Confidence 56667788888666554 35999999976
No 412
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.75 E-value=82 Score=25.06 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=38.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCccE--EEEEECCHHHHHHHHH
Q 046223 85 LVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEGI--VTVHFYDLRHAEMAFK 137 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG~--afV~F~~~~~A~~Ai~ 137 (408)
-|+=-+..+.+..+|++.++. || +|..|.......|+ |||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 344445678999999988887 66 67778776544454 9999988777766543
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.42 E-value=9.8 Score=30.80 Aligned_cols=28 Identities=11% Similarity=0.200 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCceeeccCCCCccEEEEEEC
Q 046223 243 STLKEIFQAFGPVKELRETPLKKHQRFIEFY 273 (408)
Q Consensus 243 ~~L~~~F~~~G~v~~v~~~~~~~g~afV~F~ 273 (408)
+|+.++|...|.|+... ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---CCCCeeEEeeC
Confidence 56677888889887654 57999999976
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.94 E-value=86 Score=25.86 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=34.8
Q ss_pred EEEEcCCCCC---------CCHHHHHHHh--hccCCeEEEEEe--ecCccEEEEEECCHHH-HHHHHH
Q 046223 84 TLVLSYVPGD---------VSETIVRRDL--EVFGEVRGVQME--RLMEGIVTVHFYDLRH-AEMAFK 137 (408)
Q Consensus 84 tlfV~nLp~~---------vte~~L~~~F--~~~G~V~~v~~~--~~~kG~afV~F~~~~~-A~~Ai~ 137 (408)
++.|-|++.. ....+|++.| ..|..++-..+. ..+.|+|.|+|.+--. -..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 3556676651 4457899977 899876653333 2458899999986443 334543
No 415
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.42 E-value=87 Score=25.37 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=37.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCccE--EEEEECCHHHHHHHHH
Q 046223 85 LVLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEGI--VTVHFYDLRHAEMAFK 137 (408)
Q Consensus 85 lfV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG~--afV~F~~~~~A~~Ai~ 137 (408)
-|+=.+..+++..||++.++. || .|..|.......|+ |||.+....+|.....
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 344445679999999999887 67 67778776544454 9999988777655443
No 416
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=28.37 E-value=93 Score=24.99 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=37.6
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCccE--EEEEECCHHHHHHHHH
Q 046223 86 VLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEGI--VTVHFYDLRHAEMAFK 137 (408)
Q Consensus 86 fV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG~--afV~F~~~~~A~~Ai~ 137 (408)
|+=-+..+.+..+|+..++. || .|..|.......|+ |||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 33345678999999988887 66 67777776544454 9999988777776543
No 417
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.14 E-value=52 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=27.6
Q ss_pred CeEEEEEeecCccEEEEEECCHHHHHHHHHHhcC
Q 046223 108 EVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIRE 141 (408)
Q Consensus 108 ~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng 141 (408)
.|.+|.....-+||-|||=.+..+...|++.+.+
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 4777766545699999999999999999986654
No 418
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.35 E-value=74 Score=25.64 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=36.7
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeEEEEEeecCcc--EEEEEECCHHHHHHHH
Q 046223 86 VLSYVPGDVSETIVRRDLEV-FG-EVRGVQMERLMEG--IVTVHFYDLRHAEMAF 136 (408)
Q Consensus 86 fV~nLp~~vte~~L~~~F~~-~G-~V~~v~~~~~~kG--~afV~F~~~~~A~~Ai 136 (408)
|+=-+..+.+..+|+..++. || .|..|.......| -|||.+....+|....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHH
Confidence 33345678899999988887 66 6777777654444 4999999887776653
No 419
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.65 E-value=1.2e+02 Score=24.97 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=32.1
Q ss_pred ceEEEcCCCC-C--------CcHHHHHHHH--hcCCCceee--ccCCCCccEEEEEECCHH
Q 046223 229 GTIVVFNLDS-G--------VSSSTLKEIF--QAFGPVKEL--RETPLKKHQRFIEFYDVR 276 (408)
Q Consensus 229 ~~l~V~nLp~-~--------~t~~~L~~~F--~~~G~v~~v--~~~~~~~g~afV~F~~~~ 276 (408)
-++.|-|++. . ....+|++.| +.|..++.. .......|+|.|.|.+.-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCCh
Confidence 3455667665 1 3457899977 999876544 333446789999997743
No 420
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=21.35 E-value=1.8e+02 Score=19.08 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=41.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHh
Q 046223 83 RTLVLSYVPGDVSETIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEI 139 (408)
Q Consensus 83 rtlfV~nLp~~vte~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~l 139 (408)
.++.|.++.=.--...|++.+.. ..|..+.+.. ..+-+.|+|.+.++..++|+.+
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-NEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-SEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-cCCEEEEEECCHHHHHHHHHHc
Confidence 46788888777778889999999 8898887753 4567888888555666666643
No 421
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=20.55 E-value=2.9e+02 Score=21.19 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHhhccCCeEEEEEeecCccEEEEEECCHHHHHHHHHHhcCccccccccccceeccccCccccccCCCCCCCcccC
Q 046223 97 TIVRRDLEVFGEVRGVQMERLMEGIVTVHFYDLRHAEMAFKEIREQHMQLQQQSYGLKNPYSSGLMLMNNDNNNNNLATG 176 (408)
Q Consensus 97 ~~L~~~F~~~G~V~~v~~~~~~kG~afV~F~~~~~A~~Ai~~lng~~i~~~gr~l~~~~~~s~~~s~~~~~~~~~~~~~~ 176 (408)
.+|..+|.+.|--...........++++.|. .++.++|.+.|....+.....
T Consensus 21 ~~i~~~la~~~inI~~i~~~~~~~~~~~~~~-~~d~~~a~~~L~~~G~~v~~~--------------------------- 72 (144)
T 2f06_A 21 TEVTEVLAKENINLSALCIAENADFGILRGI-VSDPDKAYKALKDNHFAVNIT--------------------------- 72 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHTTCCEEEE---------------------------
T ss_pred HHHHHHHHHCCCCEEEEEEEecCCCCEEEEE-eCCHHHHHHHHHHcCCeEeee---------------------------
Q ss_pred CCChhHHHHHHhhhhccCCCCCCCcCCCCCCCCccccccCCcCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhcCC-Cc
Q 046223 177 CYDNQVVAESLMIMNSYAPVLPPPARGLVAGRPVWAQFIVPTCNAVPDGNNQGTIVVFNLDSGVSSSTLKEIFQAFG-PV 255 (408)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G-~v 255 (408)
..+-|+--+..=.-.++.+.+...| .|
T Consensus 73 ----------------------------------------------------svv~v~~~d~pGvla~i~~~L~~~~InI 100 (144)
T 2f06_A 73 ----------------------------------------------------DVVGISCPNVPGALAKVLGFLSAEGVFI 100 (144)
T ss_dssp ----------------------------------------------------EEEEEEEESSTTHHHHHHHHHHHTTCCE
T ss_pred ----------------------------------------------------eEEEEEeCCCCcHHHHHHHHHHHCCCCE
Q ss_pred eeeccC-CCCccEEEEEECCHHHHHHHHHHhCCcee
Q 046223 256 KELRET-PLKKHQRFIEFYDVRDAAKALKEMNGQEI 290 (408)
Q Consensus 256 ~~v~~~-~~~~g~afV~F~~~~~A~~A~~~l~g~~~ 290 (408)
..+... ...+....+.+++.+.|.+++.. .|.++
T Consensus 101 ~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 101 EYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred EEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Done!