BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046225
         (73 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SA3|A Chain A, An Asymmetric Complex Of Restriction Endonuclease Mspi
          On Its Palindromic Dna Recognition Site
 pdb|1SA3|B Chain B, An Asymmetric Complex Of Restriction Endonuclease Mspi
          On Its Palindromic Dna Recognition Site
 pdb|1YFI|A Chain A, Crystal Structure Of Restriction Endonuclease Mspi In
          Complex With Its Cognate Dna In P212121 Space Group
 pdb|1YFI|B Chain B, Crystal Structure Of Restriction Endonuclease Mspi In
          Complex With Its Cognate Dna In P212121 Space Group
          Length = 262

 Score = 26.2 bits (56), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 28 GISSEKLAIPKLLDWYLLDFAKDFESL 54
          G++S++L   KL + Y+LD  KD ESL
Sbjct: 24 GVTSDRLG--KLYEKYILDIFKDIESL 48


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,765,875
Number of Sequences: 62578
Number of extensions: 50572
Number of successful extensions: 186
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 2
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)