Query 046225
Match_columns 73
No_of_seqs 101 out of 325
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:55:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14178 YppF: YppF-like prote 77.7 1.2 2.6E-05 25.8 0.9 29 2-30 12-40 (60)
2 PF00821 PEPCK: Phosphoenolpyr 71.3 0.78 1.7E-05 36.7 -1.2 43 20-63 455-509 (586)
3 COG2922 Smg Uncharacterized pr 68.9 3.4 7.3E-05 27.9 1.6 48 2-50 69-121 (157)
4 KOG3749 Phosphoenolpyruvate ca 68.6 1.5 3.2E-05 35.0 -0.2 30 34-64 524-564 (640)
5 PHA02503 putative transcriptio 61.5 13 0.00028 20.9 2.8 22 13-42 24-45 (57)
6 cd00819 PEPCK_GTP Phosphoenolp 58.4 2.2 4.7E-05 34.2 -0.9 28 35-63 471-509 (579)
7 PRK04210 phosphoenolpyruvate c 55.8 3.1 6.7E-05 33.5 -0.5 42 21-63 470-523 (601)
8 PF04761 Phage_Treg: Lactococc 49.9 24 0.00053 19.9 2.7 22 13-42 24-45 (57)
9 smart00735 ZM ZASP-like motif. 48.3 8 0.00017 18.3 0.5 15 2-16 10-24 (26)
10 PF13865 FoP_duplication: C-te 47.3 14 0.00029 21.7 1.4 12 7-18 41-52 (74)
11 PF02865 STAT_int: STAT protei 45.7 24 0.00053 22.6 2.6 56 10-67 62-117 (124)
12 PRK09885 putative toxin YafO; 42.7 16 0.00035 24.1 1.4 39 2-40 1-39 (132)
13 TIGR03687 pupylate_cterm ubiqu 41.4 40 0.00086 17.2 2.4 19 9-27 10-28 (33)
14 cd03742 SOCS_Rab40 SOCS (suppr 35.8 60 0.0013 17.4 2.7 35 15-49 6-41 (43)
15 PF14502 HTH_41: Helix-turn-he 34.5 30 0.00065 19.0 1.5 27 40-67 9-35 (48)
16 TIGR03544 DivI1A_domain DivIVA 34.5 35 0.00076 16.9 1.6 20 3-22 15-34 (34)
17 PF14804 Jag_N: Jag N-terminus 33.8 30 0.00065 19.0 1.4 18 6-23 2-19 (52)
18 PF05553 DUF761: Cotton fibre 33.4 40 0.00088 17.6 1.8 14 12-25 2-15 (38)
19 PHA00212 putative transcriptio 32.8 72 0.0016 18.2 2.8 11 39-49 28-38 (63)
20 PRK03430 hypothetical protein; 31.7 34 0.00074 23.0 1.6 47 2-49 69-120 (157)
21 PF10364 NKWYS: Putative capsu 30.2 1.6E+02 0.0034 19.6 4.6 46 4-50 71-121 (141)
22 COG4574 Eco Serine protease in 30.1 18 0.0004 24.3 0.1 12 1-12 133-144 (162)
23 cd00059 FH Forkhead (FH), also 29.2 38 0.00083 20.0 1.4 18 31-48 19-36 (78)
24 PRK11467 secY/secA suppressor 28.9 68 0.0015 20.8 2.6 24 9-32 5-28 (124)
25 TIGR03499 FlhF flagellar biosy 28.9 54 0.0012 23.2 2.4 30 1-30 1-30 (282)
26 smart00253 SOCS suppressors of 28.5 95 0.0021 16.1 2.9 33 15-47 10-43 (43)
27 COG3408 GDB1 Glycogen debranch 28.3 71 0.0015 25.9 3.1 37 12-50 248-288 (641)
28 PF00714 IFN-gamma: Interferon 28.2 40 0.00087 22.4 1.5 45 4-48 6-67 (138)
29 PF13984 MsyB: MsyB protein 26.9 73 0.0016 20.6 2.5 27 10-36 4-30 (122)
30 PF13531 SBP_bac_11: Bacterial 26.9 75 0.0016 20.9 2.7 26 3-29 1-26 (230)
31 COG1274 PckA Phosphoenolpyruva 26.4 11 0.00024 30.3 -1.7 42 21-63 478-531 (608)
32 PF05028 PARG_cat: Poly (ADP-r 25.7 43 0.00093 24.8 1.4 56 3-62 261-320 (340)
33 PF15368 BioT2: Spermatogenesi 25.4 97 0.0021 21.3 3.0 27 10-46 138-164 (170)
34 PF08157 NUC129: NUC129 domain 25.0 1.1E+02 0.0025 17.7 2.8 33 10-42 10-43 (63)
35 PF11834 DUF3354: Domain of un 24.8 63 0.0014 18.8 1.7 21 5-25 22-42 (69)
36 KOG3467 Histone H4 [Chromatin 24.7 1.3E+02 0.0028 18.8 3.2 35 10-44 50-92 (103)
37 PF13518 HTH_28: Helix-turn-he 24.6 68 0.0015 16.2 1.8 22 44-65 19-40 (52)
38 KOG0909 Peptide:N-glycanase [P 24.5 62 0.0013 25.7 2.1 35 13-47 120-155 (500)
39 PRK09946 hypothetical protein; 24.5 78 0.0017 23.3 2.5 25 36-60 14-40 (270)
40 smart00339 FH FORKHEAD. FORKHE 24.1 54 0.0012 19.7 1.4 18 31-48 19-36 (89)
41 PF00976 ACTH_domain: Corticot 23.7 17 0.00036 19.2 -0.7 12 2-14 19-30 (39)
42 PF02639 DUF188: Uncharacteriz 23.6 51 0.0011 21.3 1.3 14 4-17 79-92 (130)
43 PF03513 Cloacin_immun: Cloaci 23.3 42 0.00092 20.5 0.8 16 43-59 21-36 (82)
44 PF06254 DUF1019: Protein of u 23.3 47 0.001 20.4 1.1 13 37-49 11-23 (89)
45 smart00070 GLUCA Glucagon like 23.1 1.1E+02 0.0023 14.7 2.4 15 11-25 10-25 (27)
46 cd03739 SOCS_SOCS5 SOCS (suppr 22.8 1.5E+02 0.0032 16.8 3.0 35 15-49 6-41 (57)
47 PF02671 PAH: Paired amphipath 21.9 1.3E+02 0.0028 15.4 2.9 32 31-63 16-47 (47)
48 PF12434 Malate_DH: Malate deh 21.9 1.1E+02 0.0024 15.0 2.1 15 9-23 11-25 (28)
49 PF07812 TfuA: TfuA-like prote 21.6 64 0.0014 21.0 1.5 17 31-47 42-58 (120)
50 PF00123 Hormone_2: Peptide ho 21.5 78 0.0017 15.3 1.5 16 10-25 9-25 (28)
51 PF05112 Baculo_p47: Baculovir 21.4 48 0.001 24.9 0.9 31 33-63 92-133 (313)
52 PF12630 Pox_polyA_pol_N: Poxv 21.2 94 0.002 19.9 2.2 31 40-70 51-81 (108)
53 PRK09480 slmA division inhibit 21.1 1.7E+02 0.0038 18.4 3.5 45 1-45 1-53 (194)
54 PLN02557 phosphoribosylformylg 20.6 99 0.0022 23.4 2.5 29 31-59 311-339 (379)
55 PF06034 DUF919: Nucleopolyhed 20.2 1.5E+02 0.0032 17.1 2.7 19 9-27 41-59 (62)
56 PF00250 Fork_head: Fork head 20.2 75 0.0016 19.3 1.5 17 31-47 19-35 (96)
57 PF14998 Ripply: Transcription 20.1 1.5E+02 0.0033 18.2 2.8 27 1-27 42-70 (87)
No 1
>PF14178 YppF: YppF-like protein
Probab=77.69 E-value=1.2 Score=25.78 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=24.7
Q ss_pred ceeeechhhHHHHHHHHHHHHHhhhhccc
Q 046225 2 KVRVYTASEVESELEVAKREYLQAAVGIS 30 (73)
Q Consensus 2 ~vr~Yta~~l~~qL~~aa~~Fi~~~v~v~ 30 (73)
.++=|.|+++++.|+-|.+-||++.+.+.
T Consensus 12 ~~k~y~p~~~NeLLDFar~~Yi~gei~i~ 40 (60)
T PF14178_consen 12 QKKKYEPEDMNELLDFARKLYIQGEISIN 40 (60)
T ss_pred HHhccCcccHHHHHHHHHHHHHhCcccHH
Confidence 35669999999999999999999876554
No 2
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=71.34 E-value=0.78 Score=36.69 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=28.2
Q ss_pred HHHHhhhhcccCCe-eeehHHH--HHhHhh---------hhcChhHHHHHHHhcCc
Q 046225 20 REYLQAAVGISSEK-LAIPKLL--DWYLLD---------FAKDFESLLDWICLQSV 63 (73)
Q Consensus 20 ~~Fi~~~v~v~~~~-v~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl~ 63 (73)
-+|+++-..+.++. -.+|||| .||++| ||.+ ..||+||.+...
T Consensus 455 gdY~~hwL~~~~~~~~k~PkIF~VNwFrk~~~G~flWPGfgen-~RVL~Wi~~R~~ 509 (586)
T PF00821_consen 455 GDYLQHWLSMGKKLGRKLPKIFHVNWFRKDEDGKFLWPGFGEN-SRVLKWIERRVE 509 (586)
T ss_dssp HHHHHHHHHHGGSTTGBS-EEEEEEST-B-TTSSBSS--GGGH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccccCCCcEEEEEeeEEcCCCccccCCCccc-HHHHHHHHHHhc
Confidence 35777755555332 6899999 899999 5555 579999997643
No 3
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.91 E-value=3.4 Score=27.95 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=34.6
Q ss_pred ceeeechhhHHHHHHHHHHHHHhh---hhccc--CCeeeehHHHHHhHhhhhcC
Q 046225 2 KVRVYTASEVESELEVAKREYLQA---AVGIS--SEKLAIPKLLDWYLLDFAKD 50 (73)
Q Consensus 2 ~vr~Yta~~l~~qL~~aa~~Fi~~---~v~v~--~~~v~lskIf~Wy~~DFg~~ 50 (73)
|+|+||++..+. |+..+|.|+.= -..++ .+++.+.+++.-=...|.-+
T Consensus 69 ~lRIYt~EE~~r-L~~e~rGfllfLeq~~vl~~etREmVI~r~M~Ld~~E~~ld 121 (157)
T COG2922 69 ALRIYTPEECDR-LDAECRGFLLFLEQIQVLNLETREMVIERVMALDTDEIDLD 121 (157)
T ss_pred ceEeeCHHHHhc-cCHHHHHHHHHHHHHcccChhHHHHHHHHHHcCCccccccc
Confidence 799999999875 78899988743 22233 66788888887655555544
No 4
>KOG3749 consensus Phosphoenolpyruvate carboxykinase [Energy production and conversion]
Probab=68.65 E-value=1.5 Score=35.01 Aligned_cols=30 Identities=27% Similarity=0.782 Sum_probs=24.0
Q ss_pred eeehHHH--HHhHhh---------hhcChhHHHHHHHhcCcc
Q 046225 34 LAIPKLL--DWYLLD---------FAKDFESLLDWICLQSVV 64 (73)
Q Consensus 34 v~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl~~ 64 (73)
-.+|||| .||++| ||.+ ..+++||.+-+..
T Consensus 524 ~~~PkIFhvNwfrk~~~gKfLWPGfgeN-~RVlewI~rR~~g 564 (640)
T KOG3749|consen 524 AKLPKIFHVNWFRKDKEGKFLWPGFGEN-ARVLEWIFRRVAG 564 (640)
T ss_pred CCCCcEEEeeeeeeccCCCccCCCCcch-hHHHHHHHHHhcc
Confidence 7899999 799988 4555 5799999976554
No 5
>PHA02503 putative transcription regulator; Provisional
Probab=61.46 E-value=13 Score=20.95 Aligned_cols=22 Identities=36% Similarity=0.919 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhcccCCeeeehHHHHH
Q 046225 13 SELEVAKREYLQAAVGISSEKLAIPKLLDW 42 (73)
Q Consensus 13 ~qL~~aa~~Fi~~~v~v~~~~v~lskIf~W 42 (73)
++|..-..+||+++. +|.+|+|
T Consensus 24 e~l~~~s~~fl~~sl--------ipql~ew 45 (57)
T PHA02503 24 EKLSVYSKDFLQNSL--------IPQLYEW 45 (57)
T ss_pred HHHHHHHHHHHHhhh--------hHHHHHH
Confidence 455555556665543 5666666
No 6
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=58.44 E-value=2.2 Score=34.18 Aligned_cols=28 Identities=29% Similarity=0.844 Sum_probs=22.2
Q ss_pred eehHHH--HHhHhh---------hhcChhHHHHHHHhcCc
Q 046225 35 AIPKLL--DWYLLD---------FAKDFESLLDWICLQSV 63 (73)
Q Consensus 35 ~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl~ 63 (73)
.+|||| .||++| ||.+ .-+|+||.....
T Consensus 471 ~~PkIF~VNwFrkd~~G~flwpgfgdn-~rvL~Wi~~R~~ 509 (579)
T cd00819 471 KLPKIFGVNWFRKDEDGKFLWPGFGEN-SRVLKWIFRRVE 509 (579)
T ss_pred CCCcEEEEeeeeecCCCCCcCCCccch-hhHHHHHHHHhc
Confidence 699999 899888 4565 469999986643
No 7
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=55.84 E-value=3.1 Score=33.50 Aligned_cols=42 Identities=24% Similarity=0.627 Sum_probs=27.4
Q ss_pred HHHhhhhcccCCe-eeehHHH--HHhHhh---------hhcChhHHHHHHHhcCc
Q 046225 21 EYLQAAVGISSEK-LAIPKLL--DWYLLD---------FAKDFESLLDWICLQSV 63 (73)
Q Consensus 21 ~Fi~~~v~v~~~~-v~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl~ 63 (73)
+|+++-..+-++. -.+|||| .||++| ||.+ ..||+||.....
T Consensus 470 dY~~hwl~~g~~~~~~~PkIF~VNwFrkd~~G~flWPGfgeN-~RVL~Wi~~R~~ 523 (601)
T PRK04210 470 DYFQHWLDFGKKLGSKLPKIFGVNWFRKDEDGKFLWPGFGEN-MRVLKWIVDRVE 523 (601)
T ss_pred HHHHHHHHHhcccCCCCCcEEEeeeeeecCCCCCcCCCCcch-hHHHHHHHHhhc
Confidence 4555533333221 3799999 899997 4555 468999996643
No 8
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=49.87 E-value=24 Score=19.86 Aligned_cols=22 Identities=36% Similarity=0.903 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhcccCCeeeehHHHHH
Q 046225 13 SELEVAKREYLQAAVGISSEKLAIPKLLDW 42 (73)
Q Consensus 13 ~qL~~aa~~Fi~~~v~v~~~~v~lskIf~W 42 (73)
++|-.-..+||+++ .+|.+|+|
T Consensus 24 ~kl~~~s~~flq~s--------lipql~ew 45 (57)
T PF04761_consen 24 EKLSVDSKDFLQNS--------LIPQLYEW 45 (57)
T ss_pred HHHHHHHHHHHHHh--------hHHHHHHH
Confidence 34444455555543 36777777
No 9
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=48.31 E-value=8 Score=18.32 Aligned_cols=15 Identities=13% Similarity=0.527 Sum_probs=12.4
Q ss_pred ceeeechhhHHHHHH
Q 046225 2 KVRVYTASEVESELE 16 (73)
Q Consensus 2 ~vr~Yta~~l~~qL~ 16 (73)
|+..|+++++++.|.
T Consensus 10 P~glys~~n~~~~l~ 24 (26)
T smart00735 10 PIGLYSSENIAETLQ 24 (26)
T ss_pred CCCCCCcccHHHhhc
Confidence 788999999977664
No 10
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=47.29 E-value=14 Score=21.66 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=9.2
Q ss_pred chhhHHHHHHHH
Q 046225 7 TASEVESELEVA 18 (73)
Q Consensus 7 ta~~l~~qL~~a 18 (73)
|++.||+||+.-
T Consensus 41 T~EeLDaELD~Y 52 (74)
T PF13865_consen 41 TAEELDAELDAY 52 (74)
T ss_pred CHHHHHHHHHHH
Confidence 678888888763
No 11
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=45.73 E-value=24 Score=22.59 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCeeeehHHHHHhHhhhhcChhHHHHHHHhcCcchhh
Q 046225 10 EVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTV 67 (73)
Q Consensus 10 ~l~~qL~~aa~~Fi~~~v~v~~~~v~lskIf~Wy~~DFg~~~~~ll~~i~~yl~~~~~ 67 (73)
++-++|+..+..+...+.-+ -++.|.++-..+..-|+.++..+...|.++|...+.
T Consensus 62 ~ll~~Lq~~~~~~~~~~~fl--~~~~l~~~~~~~q~~y~~~P~~L~~~I~~~L~~E~~ 117 (124)
T PF02865_consen 62 NLLQELQQQASRQSQEDNFL--LQHNLREIAQNFQNRYQQNPLELARIIRNCLQEEKR 117 (124)
T ss_dssp HHHHHHHHHHHHHHHHT-HH--HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchhH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 44556666665555432211 135577788888888999988999999999876554
No 12
>PRK09885 putative toxin YafO; Provisional
Probab=42.72 E-value=16 Score=24.11 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=24.6
Q ss_pred ceeeechhhHHHHHHHHHHHHHhhhhcccCCeeeehHHH
Q 046225 2 KVRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLL 40 (73)
Q Consensus 2 ~vr~Yta~~l~~qL~~aa~~Fi~~~v~v~~~~v~lskIf 40 (73)
.||+|+...|..||..-.-+-|-+.-..=+++-.||.+|
T Consensus 1 ~vrvf~~~~i~~~~~~~~~~~l~~df~~YK~~g~lp~~F 39 (132)
T PRK09885 1 MMRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIF 39 (132)
T ss_pred CeeeecchhHHHHhCcHHHHHHHHHHHHHHcCCCCchhh
Confidence 489999999999998865555544322213334455443
No 13
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=41.39 E-value=40 Score=17.23 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 046225 9 SEVESELEVAKREYLQAAV 27 (73)
Q Consensus 9 ~~l~~qL~~aa~~Fi~~~v 27 (73)
+.|+.-|+..|.+|+++-|
T Consensus 10 DeId~vLe~NAe~FV~~fV 28 (33)
T TIGR03687 10 DEIDGVLESNAEEFVRGFV 28 (33)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 4678889999999998744
No 14
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=35.84 E-value=60 Score=17.36 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhhhccc-CCeeeehHHHHHhHhhhhc
Q 046225 15 LEVAKREYLQAAVGIS-SEKLAIPKLLDWYLLDFAK 49 (73)
Q Consensus 15 L~~aa~~Fi~~~v~v~-~~~v~lskIf~Wy~~DFg~ 49 (73)
|+..++.=|+..+.++ =+++-||+-++-|-++|..
T Consensus 6 LQ~LCR~~I~~~t~~~~I~~LPLP~~Lk~yLkey~~ 41 (43)
T cd03742 6 LQDLCCRAIVSCTPVYLIDKLPLPVSIKSHLKSFAM 41 (43)
T ss_pred HHHHHHHHHHHhCCcchhhhCCCCHHHHHHHHhccc
Confidence 6677788888777665 4578999999998888864
No 15
>PF14502 HTH_41: Helix-turn-helix domain
Probab=34.54 E-value=30 Score=19.05 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=20.0
Q ss_pred HHHhHhhhhcChhHHHHHHHhcCcchhh
Q 046225 40 LDWYLLDFAKDFESLLDWICLQSVVVTV 67 (73)
Q Consensus 40 f~Wy~~DFg~~~~~ll~~i~~yl~~~~~ 67 (73)
+.+|+++|+.+ .+.++.-.++|.+.++
T Consensus 9 I~e~~~~~~vs-~GtiQ~Alk~Le~~ga 35 (48)
T PF14502_consen 9 ISEYSEKFGVS-RGTIQNALKFLEENGA 35 (48)
T ss_pred HHHHHHHhCcc-hhHHHHHHHHHHHCCc
Confidence 57899999987 5677777777665544
No 16
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=34.54 E-value=35 Score=16.87 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.3
Q ss_pred eeeechhhHHHHHHHHHHHH
Q 046225 3 VRVYTASEVESELEVAKREY 22 (73)
Q Consensus 3 vr~Yta~~l~~qL~~aa~~F 22 (73)
.+=|.++.||.-|+..+.++
T Consensus 15 ~rGY~~~eVD~fLd~v~~~~ 34 (34)
T TIGR03544 15 LRGYDAAEVDAFLDRVADDL 34 (34)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 36699999999999887653
No 17
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=33.76 E-value=30 Score=18.98 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.3
Q ss_pred echhhHHHHHHHHHHHHH
Q 046225 6 YTASEVESELEVAKREYL 23 (73)
Q Consensus 6 Yta~~l~~qL~~aa~~Fi 23 (73)
|+++++++-++.|+.++=
T Consensus 2 ~~gkt~eeAi~~A~~~l~ 19 (52)
T PF14804_consen 2 FEGKTVEEAIEKALKELG 19 (52)
T ss_dssp EEESSHHHHHHHHHHHTT
T ss_pred eeECCHHHHHHHHHHHhC
Confidence 678999999999988764
No 18
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=33.40 E-value=40 Score=17.55 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhh
Q 046225 12 ESELEVAKREYLQA 25 (73)
Q Consensus 12 ~~qL~~aa~~Fi~~ 25 (73)
+.+++.-|.+||+.
T Consensus 2 ~~evd~rAe~FI~~ 15 (38)
T PF05553_consen 2 DDEVDRRAEEFIAK 15 (38)
T ss_pred chHHHHHHHHHHHH
Confidence 46788899999986
No 19
>PHA00212 putative transcription regulator
Probab=32.77 E-value=72 Score=18.25 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.7
Q ss_pred HHHHhHhhhhc
Q 046225 39 LLDWYLLDFAK 49 (73)
Q Consensus 39 If~Wy~~DFg~ 49 (73)
+++=|..||-.
T Consensus 28 ll~~~s~~f~~ 38 (63)
T PHA00212 28 LLKDFSVQFIK 38 (63)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 20
>PRK03430 hypothetical protein; Validated
Probab=31.73 E-value=34 Score=23.04 Aligned_cols=47 Identities=21% Similarity=0.464 Sum_probs=31.4
Q ss_pred ceeeechhhHHHHHHHHHHHHHhh--hhc-cc--CCeeeehHHHHHhHhhhhc
Q 046225 2 KVRVYTASEVESELEVAKREYLQA--AVG-IS--SEKLAIPKLLDWYLLDFAK 49 (73)
Q Consensus 2 ~vr~Yta~~l~~qL~~aa~~Fi~~--~v~-v~--~~~v~lskIf~Wy~~DFg~ 49 (73)
.+|+||++..+ -|+..+|.||.- ..+ ++ .+++.+-+++.==..+++-
T Consensus 69 s~RIYt~~E~~-~L~~e~rGFL~fLEq~gvL~~~~RE~VIdR~MaL~~~~i~L 120 (157)
T PRK03430 69 SMRIYTPEECE-RLDASCRGFLLFLEQIQVLNLETREMVIDRVMALDTAEFDL 120 (157)
T ss_pred ceeeeCHHHHH-hCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 58999999875 488899999865 233 33 5567777776543444444
No 21
>PF10364 NKWYS: Putative capsular polysaccharide synthesis protein; InterPro: IPR018831 This entry contains proteins of no known function. They are found predominantly in Vibrio and cyanobacterial species and are characterised by having a NKWYS sequence motif.
Probab=30.20 E-value=1.6e+02 Score=19.57 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=31.5
Q ss_pred eeechhhHHHHHHHHHHHHHh-hhhccc----CCeeeehHHHHHhHhhhhcC
Q 046225 4 RVYTASEVESELEVAKREYLQ-AAVGIS----SEKLAIPKLLDWYLLDFAKD 50 (73)
Q Consensus 4 r~Yta~~l~~qL~~aa~~Fi~-~~v~v~----~~~v~lskIf~Wy~~DFg~~ 50 (73)
-++--++|++ ++.+.++|++ .++.+. ...-.=+.|++-|+.-|--.
T Consensus 71 Llir~E~L~~-~~~~i~efL~i~~f~l~~~N~a~nK~Y~~iY~~fke~~~l~ 121 (141)
T PF10364_consen 71 LLIRCEKLDS-LQEAIREFLGIDNFTLVNSNEAKNKWYSNIYQEFKESYRLP 121 (141)
T ss_pred EEEehhhhhh-HHHHHHHHhCCCCccceecccccccchHHHHHHHHHhCCCC
Confidence 3556789999 9999999999 555443 33344555677666666654
No 22
>COG4574 Eco Serine protease inhibitor ecotin [General function prediction only]
Probab=30.15 E-value=18 Score=24.31 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=10.3
Q ss_pred CceeeechhhHH
Q 046225 1 MKVRVYTASEVE 12 (73)
Q Consensus 1 ~~vr~Yta~~l~ 12 (73)
.||-+|+|++|+
T Consensus 133 LPIVVY~P~~Ve 144 (162)
T COG4574 133 LPIVVYTPDNVD 144 (162)
T ss_pred CCEEEEcCCCce
Confidence 489999999886
No 23
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=29.23 E-value=38 Score=19.98 Aligned_cols=18 Identities=17% Similarity=0.617 Sum_probs=15.6
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 19 ~~~lTL~eIy~~I~~~~p 36 (78)
T cd00059 19 EKRLTLSEIYKWISDNFP 36 (78)
T ss_pred CCCeeHHHHHHHHHHhCC
Confidence 678999999999988773
No 24
>PRK11467 secY/secA suppressor protein; Provisional
Probab=28.89 E-value=68 Score=20.75 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHhhhhcccCC
Q 046225 9 SEVESELEVAKREYLQAAVGISSE 32 (73)
Q Consensus 9 ~~l~~qL~~aa~~Fi~~~v~v~~~ 32 (73)
.+|++-++.|..+||.++.+++..
T Consensus 5 aTLeeAIdAAREefla~~p~~d~~ 28 (124)
T PRK11467 5 ATLEEAIDAAREEFLADNPGIDAE 28 (124)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcc
Confidence 368889999999999888777733
No 25
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.86 E-value=54 Score=23.25 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=26.4
Q ss_pred CceeeechhhHHHHHHHHHHHHHhhhhccc
Q 046225 1 MKVRVYTASEVESELEVAKREYLQAAVGIS 30 (73)
Q Consensus 1 ~~vr~Yta~~l~~qL~~aa~~Fi~~~v~v~ 30 (73)
|-|+.|++.++.+-|.....++=.+-+.++
T Consensus 1 M~ik~f~a~~~~eal~~ik~elG~dAvIls 30 (282)
T TIGR03499 1 MKIKRFTAPTMREALAKVKEELGPDAVILS 30 (282)
T ss_pred CeeEEEecCCHHHHHHHHHHHHCCCcEEEE
Confidence 789999999999999999999988766554
No 26
>smart00253 SOCS suppressors of cytokine signalling. suppressors of cytokine signalling
Probab=28.52 E-value=95 Score=16.06 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhccc-CCeeeehHHHHHhHhhh
Q 046225 15 LEVAKREYLQAAVGIS-SEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 15 L~~aa~~Fi~~~v~v~-~~~v~lskIf~Wy~~DF 47 (73)
|...++--|++.++.+ =..+-||..+++|-.+|
T Consensus 10 LqhLCR~~I~~~~~~~~i~~LpLP~~lk~yL~~y 43 (43)
T smart00253 10 LQHLCRFTIRRCTRTDQIKTLPLPPKLKDYLSYY 43 (43)
T ss_pred HHHHHHHHHHHHcCCcCcccCCCCHHHHHHHHhC
Confidence 4456667777766554 35788999999987654
No 27
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=28.28 E-value=71 Score=25.88 Aligned_cols=37 Identities=19% Similarity=0.496 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhcccC-C---eeeehHHHHHhHhhhhcC
Q 046225 12 ESELEVAKREYLQAAVGISS-E---KLAIPKLLDWYLLDFAKD 50 (73)
Q Consensus 12 ~~qL~~aa~~Fi~~~v~v~~-~---~v~lskIf~Wy~~DFg~~ 50 (73)
.+-+..|..+.++-...... + .+-+| |++||. +||-+
T Consensus 248 ~~~~~~a~~dl~~~~~~~~~~g~~~~Ag~P-~~~WF~-~fGRD 288 (641)
T COG3408 248 NEAFRRAKADLLELTTSTGETGPGLYAGLP-IAHWFS-PFGRD 288 (641)
T ss_pred HHHHHHHHHHHHHHHhhccccCcceEecCC-cchhcc-ccchH
Confidence 35566677777775332221 1 34556 889999 99975
No 28
>PF00714 IFN-gamma: Interferon gamma This family is a subset of the SCOP family.; InterPro: IPR002069 Interferon gamma (IFN-gamma) is produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma shows antiviral activity and has important immunoregulatory functions. It is a potent activator of microphages and had antiproliferative effects on transformed cells. It can potentiate the antiviral and antitumor effects of the type I interferons. The crystal structures of a number IFN-gamma proteins have been solved, including bovine interferon-gamma at 2.0-A [] and human IFN-gamma at 2.9-A [].; GO: 0005133 interferon-gamma receptor binding, 0006955 immune response, 0005576 extracellular region; PDB: 1FG9_A 1FYH_D 1EKU_B 3BES_L 1RFB_A 1D9G_A 1D9C_B.
Probab=28.21 E-value=40 Score=22.41 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=28.5
Q ss_pred eeechhhHHHHHHHHHHHHHhhhhccc-----------------CCeeeehHHHHHhHhhhh
Q 046225 4 RVYTASEVESELEVAKREYLQAAVGIS-----------------SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 4 r~Yta~~l~~qL~~aa~~Fi~~~v~v~-----------------~~~v~lskIf~Wy~~DFg 48 (73)
.+|+..++.++++.-..-|-.++..|. +++|.+|.|+.-|-+=|.
T Consensus 6 ~~y~~~~l~~eIe~LK~yfNas~sdv~dgg~lFl~iLknwkEesekKIi~SqIVs~Y~kiFe 67 (138)
T PF00714_consen 6 GCYCQSNLIKEIEKLKNYFNASNSDVADGGPLFLDILKNWKEESEKKIIQSQIVSFYLKIFE 67 (138)
T ss_dssp -----HCHHHHHHHHHHHCTTTSCCCCTTS-SSHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhCCCchhhccCCchHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 479999999999999888865543332 345777777777776664
No 29
>PF13984 MsyB: MsyB protein
Probab=26.92 E-value=73 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCeeee
Q 046225 10 EVESELEVAKREYLQAAVGISSEKLAI 36 (73)
Q Consensus 10 ~l~~qL~~aa~~Fi~~~v~v~~~~v~l 36 (73)
+|++-++.|..+||.++-+++.....+
T Consensus 4 TLeEAIdAAREefla~~p~~~ed~~~V 30 (122)
T PF13984_consen 4 TLEEAIDAAREEFLAANPEIDEDEASV 30 (122)
T ss_pred hHHHHHHHHHHHHHHhCCCccccchhH
Confidence 688999999999999877666333333
No 30
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=26.92 E-value=75 Score=20.89 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=21.8
Q ss_pred eeeechhhHHHHHHHHHHHHHhhhhcc
Q 046225 3 VRVYTASEVESELEVAKREYLQAAVGI 29 (73)
Q Consensus 3 vr~Yta~~l~~qL~~aa~~Fi~~~v~v 29 (73)
|++|++..+..-++..+..| ++..++
T Consensus 1 L~V~~~~~~~~~~~~l~~~f-~~~~g~ 26 (230)
T PF13531_consen 1 LTVYAASGLAPALEELAEAF-EKQPGI 26 (230)
T ss_dssp EEEEEEGGGHHHHHHHHHHH-HHHHCE
T ss_pred CEEEEcccHHHHHHHHHHHH-HhccCC
Confidence 68999999999999999999 654433
No 31
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=26.36 E-value=11 Score=30.30 Aligned_cols=42 Identities=19% Similarity=0.575 Sum_probs=27.8
Q ss_pred HHHhhhhccc-CCeeeehHHH--HHhHhh---------hhcChhHHHHHHHhcCc
Q 046225 21 EYLQAAVGIS-SEKLAIPKLL--DWYLLD---------FAKDFESLLDWICLQSV 63 (73)
Q Consensus 21 ~Fi~~~v~v~-~~~v~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl~ 63 (73)
+|+++=...- +..-.+|||| .||++| ||.+ .-+|+||..-+.
T Consensus 478 dYf~hwl~~G~k~~~k~PKIF~VNwFrr~e~G~Flwpgf~en-~rvL~Wi~~R~e 531 (608)
T COG1274 478 DYFRHWLEFGRKLRDKLPKIFGVNWFRRGEDGRFLWPGFGEN-SRVLKWIVDRIE 531 (608)
T ss_pred HHHHHHHHHHHhhhccCCcEEEEEeEEEcCCCcEeCCCcccc-hhhhhhHHHHhc
Confidence 5566643332 2212899999 999994 6666 579999986543
No 32
>PF05028 PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG); InterPro: IPR007724 Poly(ADP-ribose) glycohydrolase (PARG) is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death [].; GO: 0004649 poly(ADP-ribose) glycohydrolase activity, 0005975 carbohydrate metabolic process; PDB: 4FC2_D 3UEL_C 3UEK_A.
Probab=25.69 E-value=43 Score=24.78 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=33.9
Q ss_pred eeeechhhHHHHHHHHHHHHHhhhhcccCCeeeehHHH--HHhHhhhhcChh--HHHHHHHhcC
Q 046225 3 VRVYTASEVESELEVAKREYLQAAVGISSEKLAIPKLL--DWYLLDFAKDFE--SLLDWICLQS 62 (73)
Q Consensus 3 vr~Yta~~l~~qL~~aa~~Fi~~~v~v~~~~v~lskIf--~Wy~~DFg~~~~--~ll~~i~~yl 62 (73)
.+=|++++|+.||.+|-..|......-. ..+.|. .|=-+.||++.. -||+|++..+
T Consensus 261 ~~Q~~~~~i~REl~Kay~gF~~~~~~~~----~~~~I~TGnWGCGaFgGd~~lK~lIQ~lAas~ 320 (340)
T PF05028_consen 261 SRQYKPENIDRELNKAYSGFSSQSEGSQ----NIPPIATGNWGCGAFGGDPQLKFLIQWLAASL 320 (340)
T ss_dssp CGGGSHHHHHHHHHHHHHHH--TTS-CC----CS--EEEESTTCCCC-B-HHHHHHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHHHhhhhccccccc----ccceEecCCcCccccCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999994321111 111122 587888998743 4788887543
No 33
>PF15368 BioT2: Spermatogenesis family BioT2
Probab=25.44 E-value=97 Score=21.25 Aligned_cols=27 Identities=22% Similarity=0.473 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCeeeehHHHHHhHhh
Q 046225 10 EVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLD 46 (73)
Q Consensus 10 ~l~~qL~~aa~~Fi~~~v~v~~~~v~lskIf~Wy~~D 46 (73)
.+-+||++|..+=-| .|-.+|+||..-
T Consensus 138 ~faaQLEeAvKEE~n----------iLeSLfKWFQ~Q 164 (170)
T PF15368_consen 138 QFAAQLEEAVKEERN----------ILESLFKWFQQQ 164 (170)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 345677777665322 355679999763
No 34
>PF08157 NUC129: NUC129 domain; InterPro: IPR012579 This C-terminal domain is found in a novel family of hypothetical nucleolar proteins [].; GO: 0005634 nucleus
Probab=25.00 E-value=1.1e+02 Score=17.69 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhhhhccc-CCeeeehHHHHH
Q 046225 10 EVESELEVAKREYLQAAVGIS-SEKLAIPKLLDW 42 (73)
Q Consensus 10 ~l~~qL~~aa~~Fi~~~v~v~-~~~v~lskIf~W 42 (73)
.+-.-..++|++||++...=- .++-++.++|.-
T Consensus 10 ~l~~~~QqaAk~Fi~~~LYGpgsnRTT~N~flSL 43 (63)
T PF08157_consen 10 SLRDSQQQAAKDFIQSRLYGPGSNRTTVNEFLSL 43 (63)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCcccHHHHhhh
Confidence 344455679999999864222 455566666643
No 35
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=24.76 E-value=63 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=16.9
Q ss_pred eechhhHHHHHHHHHHHHHhh
Q 046225 5 VYTASEVESELEVAKREYLQA 25 (73)
Q Consensus 5 ~Yta~~l~~qL~~aa~~Fi~~ 25 (73)
+.-|+++++.|+.|++.|=-.
T Consensus 22 i~lP~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 22 IWLPDSLEELLKIASEKFGFS 42 (69)
T ss_pred EEcCccHHHHHHHHHHHhCCC
Confidence 345789999999999998654
No 36
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=24.65 E-value=1.3e+02 Score=18.81 Aligned_cols=35 Identities=6% Similarity=0.024 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHhhhhcc----c----CCeeeehHHHHHhH
Q 046225 10 EVESELEVAKREYLQAAVGI----S----SEKLAIPKLLDWYL 44 (73)
Q Consensus 10 ~l~~qL~~aa~~Fi~~~v~v----~----~~~v~lskIf~Wy~ 44 (73)
-+.+|.+.+++.||++...+ . .++|+.+-|++-.+
T Consensus 50 ~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LK 92 (103)
T KOG3467|consen 50 LIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 (103)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHH
Confidence 46789999999999985432 2 66788888876544
No 37
>PF13518 HTH_28: Helix-turn-helix domain
Probab=24.65 E-value=68 Score=16.18 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=15.2
Q ss_pred HhhhhcChhHHHHHHHhcCcch
Q 046225 44 LLDFAKDFESLLDWICLQSVVV 65 (73)
Q Consensus 44 ~~DFg~~~~~ll~~i~~yl~~~ 65 (73)
+..||-+...|-.|+..|-..+
T Consensus 19 a~~~gis~~tv~~w~~~y~~~G 40 (52)
T PF13518_consen 19 AREFGISRSTVYRWIKRYREGG 40 (52)
T ss_pred HHHHCCCHhHHHHHHHHHHhcC
Confidence 4466666667888888886543
No 38
>KOG0909 consensus Peptide:N-glycanase [Posttranslational modification, protein turnover, chaperones]
Probab=24.54 E-value=62 Score=25.66 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhh-hhcccCCeeeehHHHHHhHhhh
Q 046225 13 SELEVAKREYLQA-AVGISSEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 13 ~qL~~aa~~Fi~~-~v~v~~~~v~lskIf~Wy~~DF 47 (73)
+.-+.|-.++... ...+.++-+..=.|++||+.||
T Consensus 120 EL~~kA~ekla~~eg~ki~kdy~i~leLL~WFKq~F 155 (500)
T KOG0909|consen 120 ELKEKASEKLAKAEGEKIYKDYLIKLELLNWFKQDF 155 (500)
T ss_pred HHHHHHHHhhcccchhhhhcchHHHHHHHHHHHHhh
Confidence 3334455555542 2222232222237899999996
No 39
>PRK09946 hypothetical protein; Provisional
Probab=24.53 E-value=78 Score=23.27 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=17.2
Q ss_pred ehHHHHHhHhhhh--cChhHHHHHHHh
Q 046225 36 IPKLLDWYLLDFA--KDFESLLDWICL 60 (73)
Q Consensus 36 lskIf~Wy~~DFg--~~~~~ll~~i~~ 60 (73)
.+.+|.||.+.|- .+...+++-|..
T Consensus 14 ~~~~yRWFlr~fp~Gg~Y~~v~dALv~ 40 (270)
T PRK09946 14 GAVMYRWFLRHFPRGGSYADIHHALIE 40 (270)
T ss_pred chhHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 4678999999994 445555555543
No 40
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=24.14 E-value=54 Score=19.72 Aligned_cols=18 Identities=17% Similarity=0.610 Sum_probs=15.6
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 19 ~~~ltl~~Iy~~I~~~~p 36 (89)
T smart00339 19 DKRLTLSEIYKWIEDNFP 36 (89)
T ss_pred CCCeeHHHHHHHHHHhCc
Confidence 678999999999988774
No 41
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=23.70 E-value=17 Score=19.25 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=8.3
Q ss_pred ceeeechhhHHHH
Q 046225 2 KVRVYTASEVESE 14 (73)
Q Consensus 2 ~vr~Yta~~l~~q 14 (73)
||++| |..++++
T Consensus 19 PvKVy-pn~~Eee 30 (39)
T PF00976_consen 19 PVKVY-PNGAEEE 30 (39)
T ss_pred cceeC-CCCcccc
Confidence 88999 6666543
No 42
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=23.56 E-value=51 Score=21.28 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=12.0
Q ss_pred eeechhhHHHHHHH
Q 046225 4 RVYTASEVESELEV 17 (73)
Q Consensus 4 r~Yta~~l~~qL~~ 17 (73)
+.||.+||++.|..
T Consensus 79 ~~yt~~nI~~~L~~ 92 (130)
T PF02639_consen 79 KEYTKENIDELLAM 92 (130)
T ss_pred CCCCHHHHHHHHHH
Confidence 47999999999964
No 43
>PF03513 Cloacin_immun: Cloacin immunity protein; InterPro: IPR003063 The cloacin immunity protein complexes with cloacin in equimolar quantities and inhibits it by binding with high affinity to the cloacin C-terminal catalytic domain. The immunity protein is relatively small, containing 85 amino acids. An extra ribosome binding site has been found to precede the immunity gene on the polycistronic Clo DF13 mRNA [], which perhaps accounts for the fact that, in cloacinogenic cells, more immunity protein than cloacin is synthesised []. Comparison of the complete amino acid sequence of the Clo DF13 immunity protein with that of the Col E3 and Col E6 immunity proteins reveals extensive similarities in primary structure, although Col E3 and Clo DF13 immunity proteins are exchangeable only to a low extent in vivo and in vitro [].; GO: 0015643 toxin binding, 0030153 bacteriocin immunity; PDB: 1E44_A 2B5U_D 1JCH_D 3EIP_A.
Probab=23.31 E-value=42 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.460 Sum_probs=8.3
Q ss_pred hHhhhhcChhHHHHHHH
Q 046225 43 YLLDFAKDFESLLDWIC 59 (73)
Q Consensus 43 y~~DFg~~~~~ll~~i~ 59 (73)
|..|||.+ ++||+-+-
T Consensus 21 yS~DlgDd-~svie~lg 36 (82)
T PF03513_consen 21 YSKDLGDD-GSVIEKLG 36 (82)
T ss_dssp E----TT--THHHHHHT
T ss_pred echhcCCc-hHHHHHhC
Confidence 67899997 68888664
No 44
>PF06254 DUF1019: Protein of unknown function (DUF1019); InterPro: IPR009364 This entry is represented by Bacteriophage phi-80, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 3C4R_C.
Probab=23.31 E-value=47 Score=20.42 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=8.2
Q ss_pred hHHHHHhHhhhhc
Q 046225 37 PKLLDWYLLDFAK 49 (73)
Q Consensus 37 skIf~Wy~~DFg~ 49 (73)
-+||.|..+|-..
T Consensus 11 Q~iFRwl~~ds~~ 23 (89)
T PF06254_consen 11 QKIFRWLDNDSPA 23 (89)
T ss_dssp HHHHHHHH--SHH
T ss_pred HHHHHHHhCCCHH
Confidence 3799999997543
No 45
>smart00070 GLUCA Glucagon like hormones.
Probab=23.11 E-value=1.1e+02 Score=14.74 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=9.1
Q ss_pred HHHHHHH-HHHHHHhh
Q 046225 11 VESELEV-AKREYLQA 25 (73)
Q Consensus 11 l~~qL~~-aa~~Fi~~ 25 (73)
...-|++ +|++||+.
T Consensus 10 ysk~L~~~~ar~fl~~ 25 (27)
T smart00070 10 YSKYLDQLAAKKFLQW 25 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444544 78888763
No 46
>cd03739 SOCS_SOCS5 SOCS (suppressors of cytokine signaling) box of SOCS5-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS5 inhibits Th2 differentiation by inhibiting IL-4 signaling. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=22.83 E-value=1.5e+02 Score=16.82 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhhhcccC-CeeeehHHHHHhHhhhhc
Q 046225 15 LEVAKREYLQAAVGISS-EKLAIPKLLDWYLLDFAK 49 (73)
Q Consensus 15 L~~aa~~Fi~~~v~v~~-~~v~lskIf~Wy~~DFg~ 49 (73)
|...+|.=|++..+.+. +.+-||+-++-|-.+|-=
T Consensus 6 LQhLCR~~In~~t~~~~I~~LPLP~~LKdyLkeY~y 41 (57)
T cd03739 6 LQYICRAVICRCTTYDGIDALPLPSMLQDFLKEYHY 41 (57)
T ss_pred HHHHHHHHHHHhcCCCCcccCcCCHHHHHHHHhCCC
Confidence 56667777887765553 578999999988888753
No 47
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=21.92 E-value=1.3e+02 Score=15.37 Aligned_cols=32 Identities=6% Similarity=-0.042 Sum_probs=20.2
Q ss_pred CCeeeehHHHHHhHhhhhcChhHHHHHHHhcCc
Q 046225 31 SEKLAIPKLLDWYLLDFAKDFESLLDWICLQSV 63 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg~~~~~ll~~i~~yl~ 63 (73)
++.+..+.+..--+.=|++. .+|+.+.+.++|
T Consensus 16 ~~~~~~~~v~~~v~~Ll~~h-pdLl~~F~~FlP 47 (47)
T PF02671_consen 16 KGRISRSEVIEEVSELLRGH-PDLLEEFNRFLP 47 (47)
T ss_dssp CTCSCHHHHHHHHHHHTTT--HHHHHHHHHHSS
T ss_pred hcCCCHHHHHHHHHHHHccC-HHHHHHHHhhCc
Confidence 44555555665555556665 578888888776
No 48
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=21.92 E-value=1.1e+02 Score=14.98 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHH
Q 046225 9 SEVESELEVAKREYL 23 (73)
Q Consensus 9 ~~l~~qL~~aa~~Fi 23 (73)
++..++|.+||-+|=
T Consensus 11 ~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 11 EDKRAQLRQAALEYH 25 (28)
T ss_pred HHHHHHHHHHHHHhc
Confidence 556678999988873
No 49
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=21.62 E-value=64 Score=20.95 Aligned_cols=17 Identities=12% Similarity=0.432 Sum_probs=13.7
Q ss_pred CCeeeehHHHHHhHhhh
Q 046225 31 SEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DF 47 (73)
=|-+-+-+||+||+.--
T Consensus 42 fGM~GvG~If~~Yr~G~ 58 (120)
T PF07812_consen 42 FGMIGVGRIFEWYRDGE 58 (120)
T ss_pred cCCEeehHHHHHHhcCC
Confidence 35688999999999753
No 50
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=21.51 E-value=78 Score=15.34 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=10.6
Q ss_pred hHHHHHHH-HHHHHHhh
Q 046225 10 EVESELEV-AKREYLQA 25 (73)
Q Consensus 10 ~l~~qL~~-aa~~Fi~~ 25 (73)
++..-|+. ++++||+.
T Consensus 9 dys~~L~~~aak~fl~~ 25 (28)
T PF00123_consen 9 DYSKYLDQLAAKKFLQW 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555 88999874
No 51
>PF05112 Baculo_p47: Baculovirus P47 protein; InterPro: IPR007799 This family consists of unidentified baculoviral p47 proteins which is one of the primary components of Autographa californica nuclear polyhedrosis virus (AcMNPV) encoded RNA polymerase, which initiates transcription from late and very late promoters []. ; GO: 0046782 regulation of viral transcription
Probab=21.41 E-value=48 Score=24.87 Aligned_cols=31 Identities=32% Similarity=0.610 Sum_probs=21.2
Q ss_pred eeeehHHH---HHhHhhhhc--------ChhHHHHHHHhcCc
Q 046225 33 KLAIPKLL---DWYLLDFAK--------DFESLLDWICLQSV 63 (73)
Q Consensus 33 ~v~lskIf---~Wy~~DFg~--------~~~~ll~~i~~yl~ 63 (73)
...|=|++ .||++||.- +...|+.++++.+=
T Consensus 92 d~~llkLl~rDRW~KGD~~RL~~il~~~d~~~Li~F~cN~lW 133 (313)
T PF05112_consen 92 DKRLLKLLLRDRWYKGDFVRLRKILQQPDVSKLIKFACNVLW 133 (313)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHcccchHHHHHHHHhhhc
Confidence 34444555 799999963 33468889887763
No 52
>PF12630 Pox_polyA_pol_N: Poxvirus poly(A) polymerase N-terminal domain; InterPro: IPR024398 This domain is found at the N terminus of the pox virus Poly(A) polymerase protein []. Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This is the catalytic subunit.; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=21.25 E-value=94 Score=19.88 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=21.8
Q ss_pred HHHhHhhhhcChhHHHHHHHhcCcchhhhhh
Q 046225 40 LDWYLLDFAKDFESLLDWICLQSVVVTVLYS 70 (73)
Q Consensus 40 f~Wy~~DFg~~~~~ll~~i~~yl~~~~~~~~ 70 (73)
=+-|-+||++++.++-+.|..|.......++
T Consensus 51 k~~Ff~d~~~s~~eIk~rI~~YFsKQ~~~~k 81 (108)
T PF12630_consen 51 KKRFFSDIESSDSEIKRRILEYFSKQRRTYK 81 (108)
T ss_dssp HHHH-TTSSS-THHHHHHHHHHTTGGGC---
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcccHHH
Confidence 3678889998888899999999887665553
No 53
>PRK09480 slmA division inhibitor protein; Provisional
Probab=21.13 E-value=1.7e+02 Score=18.39 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=30.7
Q ss_pred CceeeechhhHHHHHHHHHHHHHhhh----hccc----CCeeeehHHHHHhHh
Q 046225 1 MKVRVYTASEVESELEVAKREYLQAA----VGIS----SEKLAIPKLLDWYLL 45 (73)
Q Consensus 1 ~~vr~Yta~~l~~qL~~aa~~Fi~~~----v~v~----~~~v~lskIf~Wy~~ 45 (73)
||.+..+++...+++-.|+.+-+... +.++ +-.|.-+.|+++|.+
T Consensus 1 ~~~~~~~~~~~r~~Il~aa~~l~~~~~G~~~ti~~Ia~~agvs~gt~Y~~F~~ 53 (194)
T PRK09480 1 MAMKRPKKGERREQILQALAQMLESPPGERITTAKLAARVGVSEAALYRHFPS 53 (194)
T ss_pred CCCcCCCchhHHHHHHHHHHHHHHhcCCCccCHHHHHHHhCCCHhHHHHHCCC
Confidence 78888889999999888877755332 2232 334677778887655
No 54
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=20.62 E-value=99 Score=23.45 Aligned_cols=29 Identities=10% Similarity=0.152 Sum_probs=23.2
Q ss_pred CCeeeehHHHHHhHhhhhcChhHHHHHHH
Q 046225 31 SEKLAIPKLLDWYLLDFAKDFESLLDWIC 59 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg~~~~~ll~~i~ 59 (73)
.+.+.+|.+|+|..+-++-++.++.+.++
T Consensus 311 ~~~~pv~~~f~~i~~~g~i~~~em~~tfN 339 (379)
T PLN02557 311 TGSWEVPPLFKWLQEAGNIEDAEMRRTFN 339 (379)
T ss_pred CCCCCCCHHHHHHHHhCCCCHHHHHHhcC
Confidence 67889999999999988887666665554
No 55
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=20.25 E-value=1.5e+02 Score=17.07 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHhhhh
Q 046225 9 SEVESELEVAKREYLQAAV 27 (73)
Q Consensus 9 ~~l~~qL~~aa~~Fi~~~v 27 (73)
.+++..|.....+||+-.|
T Consensus 41 ~~i~~kl~~~R~~FLn~~v 59 (62)
T PF06034_consen 41 QEIEKKLQELRQNFLNFGV 59 (62)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7889999999999998765
No 56
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=20.18 E-value=75 Score=19.30 Aligned_cols=17 Identities=18% Similarity=0.706 Sum_probs=14.9
Q ss_pred CCeeeehHHHHHhHhhh
Q 046225 31 SEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DF 47 (73)
.+.++|+.|++|...-|
T Consensus 19 ~~~Ltl~eIy~~i~~~~ 35 (96)
T PF00250_consen 19 DKRLTLSEIYEWIEENF 35 (96)
T ss_dssp TSEBEHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHhh
Confidence 67899999999987766
No 57
>PF14998 Ripply: Transcription Regulator
Probab=20.15 E-value=1.5e+02 Score=18.23 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.8
Q ss_pred Cceeeechhh-HHHHHHHHHHHHHhh-hh
Q 046225 1 MKVRVYTASE-VESELEVAKREYLQA-AV 27 (73)
Q Consensus 1 ~~vr~Yta~~-l~~qL~~aa~~Fi~~-~v 27 (73)
.|||.|-|+. ..+-|-..++.-|.+ +|
T Consensus 42 HPVRL~wPkSk~~dYLy~~gE~lL~nFPV 70 (87)
T PF14998_consen 42 HPVRLYWPKSKCYDYLYSEGEKLLANFPV 70 (87)
T ss_pred CceEeeccchHHHHHHHHHHHHHHHcCCc
Confidence 3899999988 888899999888887 55
Done!