Query 046225
Match_columns 73
No_of_seqs 101 out of 325
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:19:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3moe_A Phosphoenolpyruvate car 60.1 1.3 4.5E-05 34.6 -0.8 41 21-62 494-546 (624)
2 4a57_A Nucleoside-triphosphata 55.6 5.3 0.00018 31.2 1.8 26 13-38 492-519 (611)
3 3c5t_B Exendin-4, exenatide; l 44.5 19 0.00065 17.4 2.3 9 17-25 9-17 (31)
4 2faf_A Phosphoenolpyruvate car 43.9 2.6 8.8E-05 32.9 -1.5 41 21-62 478-530 (608)
5 2hxw_A Major antigenic peptide 41.9 19 0.00063 22.5 2.6 26 1-26 1-26 (237)
6 3ff5_A PEX14P, peroxisomal bio 34.0 30 0.001 18.6 2.3 20 8-27 5-24 (54)
7 2a07_F Forkhead box protein P2 32.5 19 0.00063 21.3 1.3 18 31-48 21-38 (93)
8 2c6y_A Forkhead box protein K2 31.9 22 0.00074 21.7 1.6 18 31-48 34-51 (111)
9 2zci_A Phosphoenolpyruvate car 30.9 5.1 0.00017 31.2 -1.7 27 35-62 492-529 (610)
10 1e17_A AFX; DNA binding domain 30.7 23 0.00077 22.8 1.6 17 31-47 58-74 (150)
11 1kq8_A HFH-1, hepatocyte nucle 30.4 19 0.00065 21.5 1.1 18 31-48 20-37 (100)
12 2hdc_A Protein (transcription 30.3 19 0.00064 21.4 1.1 18 31-48 20-37 (97)
13 3coa_C Forkhead box protein O1 29.3 20 0.00068 22.1 1.1 18 31-48 29-46 (117)
14 3bpy_A FORK head domain, forkh 29.2 21 0.0007 20.7 1.1 17 31-47 23-39 (85)
15 2hfh_A Genesis, HFH-2; HNF-3 h 28.6 20 0.00068 21.8 1.0 18 31-48 21-38 (109)
16 1vtn_C HNF-3/FORK head DNA-rec 27.6 22 0.00077 21.2 1.1 18 31-48 21-38 (102)
17 1jrj_A Exendin-4; Trp-CAGE, GL 27.5 56 0.0019 16.5 2.5 15 11-25 10-25 (39)
18 3l2c_A Forkhead box protein O4 26.2 24 0.00084 21.3 1.1 17 31-47 42-58 (110)
19 2jz3_A Suppressor of cytokine 24.0 75 0.0026 15.6 2.9 33 15-47 4-36 (40)
20 3eip_A Protein (colicin E3 imm 23.1 16 0.00055 21.5 -0.2 15 43-58 21-35 (84)
21 2g49_C Glucagon preproprotein; 22.8 72 0.0025 15.0 2.4 15 11-25 10-25 (29)
22 2kpo_A Rossmann 2X2 fold prote 22.6 55 0.0019 19.5 2.1 17 52-68 87-103 (110)
23 4aez_C MAD3, mitotic spindle c 21.6 1.2E+02 0.0041 20.5 4.0 50 9-61 94-143 (223)
24 1bgf_A STAT-4; transcription f 21.6 76 0.0026 19.5 2.8 56 10-67 60-115 (124)
25 1dw0_A Cytochrome C; asparagin 21.5 52 0.0018 20.0 2.0 25 36-60 78-111 (112)
No 1
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=60.12 E-value=1.3 Score=34.58 Aligned_cols=41 Identities=22% Similarity=0.677 Sum_probs=28.3
Q ss_pred HHHhhhhcccCC-eeeehHHH--HHhHhh---------hhcChhHHHHHHHhcC
Q 046225 21 EYLQAAVGISSE-KLAIPKLL--DWYLLD---------FAKDFESLLDWICLQS 62 (73)
Q Consensus 21 ~Fi~~~v~v~~~-~v~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl 62 (73)
+|++|-..+.++ .-.+|||| .||++| ||.+ ..||+||...+
T Consensus 494 dY~~HWL~~g~~~~~k~PkIF~VNwFrkd~~GkFLWPGfgeN-~RVL~Wi~~R~ 546 (624)
T 3moe_A 494 KYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGEN-SRVLEWMFGRI 546 (624)
T ss_dssp HHHHHHHHGGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGG-HHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCcEEEEeeeEECCCCCCcCCCCcch-hHHHHHHHHHh
Confidence 577775544421 13789999 899997 3555 57999998654
No 2
>4a57_A Nucleoside-triphosphatase 1; hydrolase; 2.00A {Toxoplasma gondii} PDB: 4a59_A* 4a5a_A* 4a5b_A 3agr_A
Probab=55.58 E-value=5.3 Score=31.17 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhhccc-CC-eeeehH
Q 046225 13 SELEVAKREYLQAAVGIS-SE-KLAIPK 38 (73)
Q Consensus 13 ~qL~~aa~~Fi~~~v~v~-~~-~v~lsk 38 (73)
+||++|++.||..++.+. ++ .|.|+-
T Consensus 492 ~~l~~aa~~fc~~p~~~~~~g~~~~~~~ 519 (611)
T 4a57_A 492 EELAEAAREFCSSEVIIRTDGPVIQLPN 519 (611)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECST
T ss_pred HHHHHHHHHhhcCcceecCCceeEEccc
Confidence 399999999999998555 44 455553
No 3
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=44.53 E-value=19 Score=17.43 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=5.9
Q ss_pred HHHHHHHhh
Q 046225 17 VAKREYLQA 25 (73)
Q Consensus 17 ~aa~~Fi~~ 25 (73)
+|+++||+-
T Consensus 9 ~aakdFv~W 17 (31)
T 3c5t_B 9 EAVRLFIEW 17 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 377777764
No 4
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=43.95 E-value=2.6 Score=32.87 Aligned_cols=41 Identities=27% Similarity=0.685 Sum_probs=27.2
Q ss_pred HHHhhhhcccCC-eeeehHHH--HHhHhh---------hhcChhHHHHHHHhcC
Q 046225 21 EYLQAAVGISSE-KLAIPKLL--DWYLLD---------FAKDFESLLDWICLQS 62 (73)
Q Consensus 21 ~Fi~~~v~v~~~-~v~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl 62 (73)
+|++|-..+.++ .-.+|||| .||++| ||.+ .-+|+||....
T Consensus 478 dY~~HWL~~g~~~~~k~PkIF~VNwFrk~~~GkflwPGfgeN-~RvL~Wi~~R~ 530 (608)
T 2faf_A 478 RYLEHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHN-ARVLAWIFGRI 530 (608)
T ss_dssp HHHHHHHHHTTSTTCBCCEEEEEESCCBCTTSSBSSCCGGGH-HHHHHHHHHHH
T ss_pred HHHHHHhhhccccCCCCCcEEEEeeeeECCCCCCCCCCCccc-hhHHHHHHHHh
Confidence 566664434321 13679999 899997 4555 46899998654
No 5
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=41.92 E-value=19 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.9
Q ss_pred CceeeechhhHHHHHHHHHHHHHhhh
Q 046225 1 MKVRVYTASEVESELEVAKREYLQAA 26 (73)
Q Consensus 1 ~~vr~Yta~~l~~qL~~aa~~Fi~~~ 26 (73)
|.|++|++..+..-++.....|-+.+
T Consensus 1 ~~l~v~~~~~~~~~~~~~~~~F~~~~ 26 (237)
T 2hxw_A 1 MDVNLYGPGGPHTALKDIANKYSEKT 26 (237)
T ss_dssp -CEEEEECSSTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeccchHHHHHHHHHHHHHHh
Confidence 78999999999888999889998663
No 6
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=34.02 E-value=30 Score=18.59 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHhhhh
Q 046225 8 ASEVESELEVAKREYLQAAV 27 (73)
Q Consensus 8 a~~l~~qL~~aa~~Fi~~~v 27 (73)
+....++|-..|+.||+++.
T Consensus 5 ~~~~Re~li~~Av~FL~dp~ 24 (54)
T 3ff5_A 5 SPEFREPLIATAVKFLQNSR 24 (54)
T ss_dssp CHHHHHHHHHHHHHHHHCTT
T ss_pred CCccHHHHHHHHHHHhCChh
Confidence 34678899999999999964
No 7
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=32.53 E-value=19 Score=21.31 Aligned_cols=18 Identities=22% Similarity=0.715 Sum_probs=15.9
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 21 ~~~ltL~eIY~~i~~~fp 38 (93)
T 2a07_F 21 DRQLTLNEIYSWFTRTFA 38 (93)
T ss_dssp TSCBCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhCC
Confidence 678999999999998774
No 8
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=31.91 E-value=22 Score=21.68 Aligned_cols=18 Identities=6% Similarity=0.263 Sum_probs=16.2
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 34 ~~~LtL~eIY~~I~~~fP 51 (111)
T 2c6y_A 34 DKQLTLNGIYTHITKNYP 51 (111)
T ss_dssp TSCEEHHHHHHHHHHHCT
T ss_pred CCCCcHHHHHHHHHHcCC
Confidence 678999999999999884
No 9
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=30.90 E-value=5.1 Score=31.25 Aligned_cols=27 Identities=19% Similarity=0.743 Sum_probs=20.6
Q ss_pred eehHHH--HHhHhh---------hhcChhHHHHHHHhcC
Q 046225 35 AIPKLL--DWYLLD---------FAKDFESLLDWICLQS 62 (73)
Q Consensus 35 ~lskIf--~Wy~~D---------Fg~~~~~ll~~i~~yl 62 (73)
.+|||| .||++| ||.+ .-+|+||....
T Consensus 492 k~PkIF~VNwFrkd~~GkflwPGfgeN-~RvL~Wi~~R~ 529 (610)
T 2zci_A 492 KMPSIFLVNWFRRGEDGRFLWPGFGDN-SRVLKWVIDRI 529 (610)
T ss_dssp GSCEEEEECTTCBCTTSCBSSCCGGGH-HHHHHHHHHHH
T ss_pred CCCcEEEEeeeeECCCCCCCCCCCccc-hhhHHHHHHHh
Confidence 469999 899997 4554 46899998653
No 10
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=30.69 E-value=23 Score=22.83 Aligned_cols=17 Identities=12% Similarity=0.638 Sum_probs=15.6
Q ss_pred CCeeeehHHHHHhHhhh
Q 046225 31 SEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DF 47 (73)
+++++|+.|++|...-|
T Consensus 58 ~k~LTL~eIY~wI~~~f 74 (150)
T 1e17_A 58 EKRLTLAQIYEWMVRTV 74 (150)
T ss_dssp SCCEEHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHhC
Confidence 67899999999999887
No 11
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=30.37 E-value=19 Score=21.47 Aligned_cols=18 Identities=11% Similarity=0.445 Sum_probs=16.0
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 20 ~~~ltL~eIY~~i~~~fp 37 (100)
T 1kq8_A 20 GGRLTLAEINEYLMGKFP 37 (100)
T ss_dssp SSCBCHHHHHHHHHHHCT
T ss_pred CCCCcHHHHHHHHHHhCc
Confidence 678999999999998874
No 12
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=30.32 E-value=19 Score=21.40 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=15.7
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 20 ~~~ltL~eIY~~i~~~fp 37 (97)
T 2hdc_A 20 QKKLTLSGICEFISNRFP 37 (97)
T ss_dssp TTCBCHHHHHHHHHHHCH
T ss_pred CCCCCHHHHHHHHHHhch
Confidence 678999999999988773
No 13
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=29.34 E-value=20 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.621 Sum_probs=15.9
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 29 ~~~LTL~eIY~~I~~~fP 46 (117)
T 3coa_C 29 EKRLTLSQIYEWMVKSVP 46 (117)
T ss_dssp TSCBCHHHHHHHHHHHCG
T ss_pred CCCccHHHHHHHHHHhCc
Confidence 678999999999998873
No 14
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=29.25 E-value=21 Score=20.66 Aligned_cols=17 Identities=12% Similarity=0.638 Sum_probs=15.4
Q ss_pred CCeeeehHHHHHhHhhh
Q 046225 31 SEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DF 47 (73)
+++++|+.|++|...-|
T Consensus 23 ~~~ltL~eIY~~i~~~f 39 (85)
T 3bpy_A 23 EKRLTLAQIYEWMVRTV 39 (85)
T ss_dssp TSCBCHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHhC
Confidence 67899999999999887
No 15
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=28.65 E-value=20 Score=21.81 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=15.7
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 21 ~~~LtL~eIY~~I~~~fP 38 (109)
T 2hfh_A 21 QKKLTLSGICEFISNRFP 38 (109)
T ss_dssp SSCBCHHHHHHHHHTTCH
T ss_pred CCCCcHHHHHHHHHHhcc
Confidence 778999999999988773
No 16
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=27.59 E-value=22 Score=21.23 Aligned_cols=18 Identities=17% Similarity=0.528 Sum_probs=15.7
Q ss_pred CCeeeehHHHHHhHhhhh
Q 046225 31 SEKLAIPKLLDWYLLDFA 48 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DFg 48 (73)
+++++|+.|++|...-|-
T Consensus 21 ~~~LtL~eIY~~I~~~fp 38 (102)
T 1vtn_C 21 GKMLTLSEIYQWIMDLFP 38 (102)
T ss_dssp TSCBCHHHHHHHHHHHCG
T ss_pred CCCCcHHHHHHHHHHcCC
Confidence 678999999999888774
No 17
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=27.48 E-value=56 Score=16.48 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=9.4
Q ss_pred HHHHHHH-HHHHHHhh
Q 046225 11 VESELEV-AKREYLQA 25 (73)
Q Consensus 11 l~~qL~~-aa~~Fi~~ 25 (73)
+...|+. |+++||+.
T Consensus 10 yS~~l~~~aak~fv~w 25 (39)
T 1jrj_A 10 LSKQMEEEAVRLFIEW 25 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445544 77888875
No 18
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=26.22 E-value=24 Score=21.34 Aligned_cols=17 Identities=12% Similarity=0.638 Sum_probs=15.4
Q ss_pred CCeeeehHHHHHhHhhh
Q 046225 31 SEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 31 ~~~v~lskIf~Wy~~DF 47 (73)
+++++|+.|++|...-|
T Consensus 42 ~~~LtL~eIY~~I~~~f 58 (110)
T 3l2c_A 42 EKRLTLAQIYEWMVRTV 58 (110)
T ss_dssp TSCBCHHHHHHHHHHHC
T ss_pred ccCcCHHHHHHHHHHhC
Confidence 67899999999999887
No 19
>2jz3_A Suppressor of cytokine signaling 3; SOCS proteins, elongins, cytokine signaling, growth regulati phosphoprotein, SH2 domain; NMR {Mus musculus}
Probab=23.96 E-value=75 Score=15.63 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhhcccCCeeeehHHHHHhHhhh
Q 046225 15 LEVAKREYLQAAVGISSEKLAIPKLLDWYLLDF 47 (73)
Q Consensus 15 L~~aa~~Fi~~~v~v~~~~v~lskIf~Wy~~DF 47 (73)
|.--+|--|++..+.....+-||+.++.|-.+|
T Consensus 4 LQHLCR~~I~~~~~~~~~~LpLP~~Lk~yL~ey 36 (40)
T 2jz3_A 4 LQHLCRKTVNGHLDSYEKVTQLPGPIREFLDQY 36 (40)
T ss_pred HHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHC
Confidence 445566677776533345789999999887765
No 20
>3eip_A Protein (colicin E3 immunity protein); ribonuclease inhibitor, immune system; 1.80A {Escherichia coli str} SCOP: d.26.2.1 PDB: 1jch_B* 2b5u_B 1e44_A
Probab=23.12 E-value=16 Score=21.52 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=11.1
Q ss_pred hHhhhhcChhHHHHHH
Q 046225 43 YLLDFAKDFESLLDWI 58 (73)
Q Consensus 43 y~~DFg~~~~~ll~~i 58 (73)
|..|||.+ ++||+-+
T Consensus 21 yS~Dlgdd-~sviE~l 35 (84)
T 3eip_A 21 YSKDFGDD-GSVMESL 35 (84)
T ss_dssp ECCCCTTC-CHHHHTT
T ss_pred eccccCCC-hhHHHHc
Confidence 67899997 6787643
No 21
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=22.77 E-value=72 Score=14.98 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=8.8
Q ss_pred HHHHHHH-HHHHHHhh
Q 046225 11 VESELEV-AKREYLQA 25 (73)
Q Consensus 11 l~~qL~~-aa~~Fi~~ 25 (73)
+...|+. ++++||+.
T Consensus 10 ysk~l~~~aak~fv~w 25 (29)
T 2g49_C 10 YSKYLDSRRAQDFVQW 25 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444 77788764
No 22
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=22.59 E-value=55 Score=19.48 Aligned_cols=17 Identities=24% Similarity=0.126 Sum_probs=9.1
Q ss_pred hHHHHHHHhcCcchhhh
Q 046225 52 ESLLDWICLQSVVVTVL 68 (73)
Q Consensus 52 ~~ll~~i~~yl~~~~~~ 68 (73)
.+.-+||..+..+++++
T Consensus 87 deakrwikefseeggsl 103 (110)
T 2kpo_A 87 DEAKRWIKEFSEEGGSL 103 (110)
T ss_dssp HHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHhhccCCc
Confidence 34556666665555443
No 23
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.63 E-value=1.2e+02 Score=20.46 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHhhhhcccCCeeeehHHHHHhHhhhhcChhHHHHHHHhc
Q 046225 9 SEVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQ 61 (73)
Q Consensus 9 ~~l~~qL~~aa~~Fi~~~v~v~~~~v~lskIf~Wy~~DFg~~~~~ll~~i~~y 61 (73)
.++..-|+..++.|.+.+.. ++....=||+-+|+. |..++.++..++...
T Consensus 94 s~L~~lLErc~~~F~~~~rY--knD~RyLklWl~Ya~-~~~~p~~if~~L~~~ 143 (223)
T 4aez_C 94 SGLVTLLERCTREFVRNPLY--KDDVRYLRIWMQYVN-YIDEPVELFSFLAHH 143 (223)
T ss_dssp TCHHHHHHHHHHHTTTCGGG--TTCHHHHHHHHHHHT-TCSCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhcccccc--cCCHHHHHHHHHHHH-ccCCHHHHHHHHHHC
Confidence 35888999999999987543 555777789999996 888877888888743
No 24
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=21.57 E-value=76 Score=19.47 Aligned_cols=56 Identities=5% Similarity=-0.162 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHhhhhcccCCeeeehHHHHHhHhhhhcChhHHHHHHHhcCcchhh
Q 046225 10 EVESELEVAKREYLQAAVGISSEKLAIPKLLDWYLLDFAKDFESLLDWICLQSVVVTV 67 (73)
Q Consensus 10 ~l~~qL~~aa~~Fi~~~v~v~~~~v~lskIf~Wy~~DFg~~~~~ll~~i~~yl~~~~~ 67 (73)
++-++|+..+..+.+.+.-+. +..|.++-+-+..-|+.++..+...|.++|...+.
T Consensus 60 ~Ll~eL~~~~~~~~~e~~fL~--q~~L~~~~~~~q~~y~~nP~~L~~~i~~~L~~E~~ 115 (124)
T 1bgf_A 60 NLLIQLDEQLGRVSKEKNLLL--IHNLKRIRKVLQGKFHGNPMHVAVVISNCLREERR 115 (124)
T ss_dssp HHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhHHH--HHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 344556665555543321111 13345555556667788888899999998866544
No 25
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=21.49 E-value=52 Score=20.04 Aligned_cols=25 Identities=16% Similarity=0.446 Sum_probs=18.2
Q ss_pred ehHHHHHhHhhhhc---------ChhHHHHHHHh
Q 046225 36 IPKLLDWYLLDFAK---------DFESLLDWICL 60 (73)
Q Consensus 36 lskIf~Wy~~DFg~---------~~~~ll~~i~~ 60 (73)
+-|+=+||.+++.. +.+++|.||..
T Consensus 78 ~akvekwf~rnc~~v~gr~cta~EK~d~l~~l~~ 111 (112)
T 1dw0_A 78 SARVEKWLGRNCNSVIGRDCTPGEKADLLAWLAA 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHcccCCHHHHHHHHHHHHh
Confidence 45888999999862 23468888764
Done!