BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046226
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 29/223 (13%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248
+ H + +A + T+ SAS DKT+K+W R+ + ++T+ HS +N + DG
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIH 308
+ SASDD TV++W R L+ TLT S V +
Sbjct: 276 TIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 309 YWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLA 366
W++ Q+ L GH+ +V + + + S S D T ++W R +L
Sbjct: 329 LWNR-----NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQ 379
Query: 367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409
L GH +R +AF + TI + S D +K+W
Sbjct: 380 TLTGHSSSVR-GVAF--------SPDGQTIASASDDKTVKLWN 413
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 29/226 (12%)
Query: 187 KDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD 246
++++ H + +A + T+ SAS DKT+K+W R+ + ++T+ HS + + +
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXX 305
DG + SASDD TV++W R L+ TLT S V+
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 306 XIHYWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHT 363
+ W++ + QL L GH+ +V + + + S S D T ++W R
Sbjct: 121 TVKLWNR---NGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQ 171
Query: 364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409
+L L GH + +AF + TI + S D +K+W
Sbjct: 172 LLQTLTGHSSSV-WGVAF--------SPDGQTIASASDDKTVKLWN 208
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 136/339 (40%), Gaps = 70/339 (20%)
Query: 90 KKDGQILCIAVG-----NGF--------IYTGSDSNVIRIW-KQPEFTECGRLKAKTSMV 135
++GQ+L G NG I + SD +++W + + + L +S V
Sbjct: 249 NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSV 306
Query: 136 VAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH 193
+ S D + +A D +++W NG +H++ + H
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWNR---NG-QHLQ-------------------TLTGH 343
Query: 194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS 252
+ +A + T+ SAS DKT+K+W R+ + ++T+ HS + + + DG + S
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402
Query: 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHK 312
ASDD TV++W R L+ TLT S V + W++
Sbjct: 403 ASDDKTVKLWNRNGQ-------LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR 455
Query: 313 GWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG 370
+ QL L GH+ +V + + + S S D T ++W R +L L G
Sbjct: 456 ---NGQLLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTG 506
Query: 371 HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409
H +R +AF + TI + S D +K+W
Sbjct: 507 HSSSVR-GVAF--------SPDGQTIASASDDKTVKLWN 536
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 34/240 (14%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248
+ H + +A + T+ SAS DKT+K+W R+ + ++T+ HS + + + DG
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 193
Query: 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIH 308
+ SASDD TV++W R L+ TLT S V+ +
Sbjct: 194 TIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246
Query: 309 YWHKGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLA 366
W++ + QL L GH+ +V +A + S S D T ++W R +L
Sbjct: 247 LWNR---NGQLLQ--TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN----GQLLQ 297
Query: 367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGH 426
L GH + +AF + TI + S D +K+W + HL GH
Sbjct: 298 TLTGHSSSV-WGVAF--------SPDGQTIASASDDKTVKLW-----NRNGQHLQTLTGH 343
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 16/168 (9%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248
+ H + +A + D T+ SAS DKT+K+W R+ + ++T+ HS + + + DG
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 480
Query: 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIH 308
+ SASDD TV++W R L+ TLT S V+ +
Sbjct: 481 TIASASDDKTVKLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 309 YWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVW 354
W++ + QL L GH+ +V + + + S S+D T ++W
Sbjct: 534 LWNR---NGQLLQ--TLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/315 (23%), Positives = 123/315 (39%), Gaps = 58/315 (18%)
Query: 103 GFIYTGSDSNVIRI------WKQPEFTECGRLKAKTSMVV-AMEVSHDRVYAAYGDGKIR 155
GFI++ S IR W++ E LK V+ ++ +R+ + D ++
Sbjct: 83 GFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK 142
Query: 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD 215
VW + TG +R L+ H G + S + D+ + S S D
Sbjct: 143 VWSAV---------------TGKCLRTLV-------GHTGGVWSSQMR--DNIIISGSTD 178
Query: 216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTL 275
+T+KVW +CI T+ H+ + + + + V+ S S DAT+RVW + LH L
Sbjct: 179 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV-SGSRDATLRVWD--IETGQCLHVL 235
Query: 276 ILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQLQYGGALQGHTHAVMCL 335
+ + A + K W LQGHT+ V L
Sbjct: 236 MGHVAA----------VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 336 ASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT 395
+V+SGS D++ RVW E + L GH+ G E +D
Sbjct: 286 QFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTS---------GMELKDNI-- 331
Query: 396 ICTGSLDGVLKMWRV 410
+ +G+ D +K+W +
Sbjct: 332 LVSGNADSTVKIWDI 346
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 106/278 (38%), Gaps = 46/278 (16%)
Query: 83 RCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTEC-GRLKAKTSMVVAMEVS 141
+C+ +++ G + + + I +GS +++W E EC L TS V M +
Sbjct: 150 KCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW-NAETGECIHTLYGHTSTVRCMHLH 208
Query: 142 HDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI- 200
RV + D +RVW +TG + L MG + ++
Sbjct: 209 EKRVVSGSRDATLRVWD---------------IETGQCLHVL----------MGHVAAVR 243
Query: 201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV-LYSASDDATV 259
+ + S + D +KVW C+ T+Q H+ + +L DG+ + S S D ++
Sbjct: 244 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSI 301
Query: 260 RVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQL 319
RVW + N +H TLT S I W
Sbjct: 302 RVWD--VETGNCIH----TLTGHQSLTSGMELKDNILVSGNADSTVKI------WDIKTG 349
Query: 320 QYGGALQG---HTHAVMCLASVANYVISGSADSTSRVW 354
Q LQG H AV CL N+VI+ S D T ++W
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 325 LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
L GHT V C+ V+SGS D+T RVW E L VL+GH +RC + + GR
Sbjct: 195 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRC-VQYDGR 250
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTRPKS-SCGHLNKTNGHEYFELQ 432
+ +G+ D ++K+W P++ +C H + + + + LQ
Sbjct: 251 ----------RVVSGAYDFMVKVW---DPETETCLHTLQGHTNRVYSLQ 286
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 102/243 (41%), Gaps = 29/243 (11%)
Query: 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240
+N + K + H G + + + + + + S D T++VW + + + T+ H E +
Sbjct: 160 KNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL 217
Query: 241 ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXX 300
L ++G++ + S D ++ VW ++ L +++ A + V
Sbjct: 218 HLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 276
Query: 301 XXXXXXIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDG 360
K W ++ ++ L GH + CL V+SGS+D+T R+W E
Sbjct: 277 TI---------KVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 361 RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT---RPKSSC 417
L VL GH +RC RF + I +G+ DG +K+W + P++
Sbjct: 328 ---CLRVLEGHEELVRCI-----RFDNK------RIVSGAYDGKIKVWDLVAALDPRAPA 373
Query: 418 GHL 420
G L
Sbjct: 374 GTL 376
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 22/170 (12%)
Query: 93 GQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDG 152
G +LC+ I TGS + +R+W L V+ + ++ + D
Sbjct: 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 233
Query: 153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA 212
I VW +A+ T +R ++VG H + ++ D + SA
Sbjct: 234 SIAVW-----------DMAS--PTDITLRRVLVG------HRAAVN--VVDFDDKYIVSA 272
Query: 213 SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVW 262
S D+TIKVW + + T+ H I L D V+ S S D T+R+W
Sbjct: 273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLW 321
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 82/228 (35%), Gaps = 30/228 (13%)
Query: 201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVR 260
+ D + S D TIK+W +C + H+ + L D+ V+ + S D+TVR
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVR 196
Query: 261 VWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQLQ 320
VW + L+TLI A I W +
Sbjct: 197 VWD--VNTGEMLNTLIHHCEA------VLHLRFNNGMMVTCSKDRSIAVWDMA-SPTDIT 247
Query: 321 YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIA 380
L GH AV + Y++S S D T +VW + L GH+ I C +
Sbjct: 248 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW---NTSTCEFVRTLNGHKRGIAC-LQ 303
Query: 381 FLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH-LNKTNGHE 427
+ R + +GS D +++W + CG L GHE
Sbjct: 304 YRDRL----------VVSGSSDNTIRLWDI-----ECGACLRVLEGHE 336
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 95 ILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR----LKAKTSMVVAMEVSHDRVYAAYG 150
I C+ + + +GS N IR+W ECG L+ +V + + R+ +
Sbjct: 299 IACLQYRDRLVVSGSSDNTIRLWD----IECGACLRVLEGHEELVRCIRFDNKRIVSGAY 354
Query: 151 DGKIRVW 157
DGKI+VW
Sbjct: 355 DGKIKVW 361
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE 388
+ V CL ++SG D+T ++W + +L GH G + C ++ E
Sbjct: 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCL-----QYDER 184
Query: 389 TEDEYCTICTGSLDGVLKMWRVT 411
I TGS D +++W V
Sbjct: 185 ------VIITGSSDSTVRVWDVN 201
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV 249
M H ++S++I + D + SAS DKTIK+W ++ C++T H E + + DG
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 250 LY-SASDDATVRVW 262
L S S+D TVRVW
Sbjct: 248 LIASCSNDQTVRVW 261
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 53/262 (20%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV-LY 251
H + I+ + S L S S D TIK+W + +CI T+ H ++++ + +G +
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
SAS D T+++W E Q + T T V+ +
Sbjct: 209 SASRDKTIKMW------EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV---- 258
Query: 312 KGWFSAQLQYGGALQGHTHAVMCL--------ASVAN--------------YVISGSADS 349
+ W A + L+ H H V C+ +S++ +++SGS D
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 350 TSRVWAREQDGRHTM-LAVLVGHRGPIRCAIAFL-GRFGEETEDEYCTICTGSLDGVLKM 407
T ++W D M L LVGH +R + G+F I + + D L++
Sbjct: 319 TIKMW----DVSTGMCLMTLVGHDNWVRGVLFHSGGKF----------ILSCADDKTLRV 364
Query: 408 WRVTRPKSSCGHLNKTNGHEYF 429
W + + N HE+F
Sbjct: 365 WDYKNKRC----MKTLNAHEHF 382
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251
H P+T + + + SAS D TIKVW T++ H++ + + G +L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 252 SASDDATVRVW 262
S S D T+++W
Sbjct: 167 SCSADMTIKLW 177
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR 263
+ S + DKT++VW ++ +C++T+ AH + +L + + S D TV+VW
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 57/169 (33%), Gaps = 33/169 (19%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-------------------- 248
+ S S D+T++VW + +C ++ H + + A +
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 249 -VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXI 307
L S S D T+++W + ++TL + V+ +
Sbjct: 309 PFLLSGSRDKTIKMW------DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 308 HYWHKGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVW 354
W + L H H V L A YV++GS D T +VW
Sbjct: 363 RVWD----YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + A+ D I++W + ++ + KL
Sbjct: 19 KFTLAGHTKAVSS--VKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 199
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 160
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 161 NRDGS-------LIVSSSYDGLCRIW 179
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 51 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 107
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 108 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 143
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 22 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 194
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 202
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 163
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 164 NRDGS-------LIVSSSYDGLCRIW 182
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 54 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 110
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 111 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 146
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 33 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 174
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 213
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 174
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 175 NRDGS-------LIVSSSYDGLCRIW 193
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 65 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 121
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 122 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 157
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 15 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 187
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 156
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 195
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 156
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 157 NRDGS-------LIVSSSYDGLCRIW 175
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 47 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 103
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 104 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 139
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 22 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 194
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 202
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 163
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 164 NRDGS-------LIVSSSYDGLCRIW 182
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 54 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 110
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 111 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 146
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 40 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 212
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 181
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 220
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP----INALVVADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H V + S S
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-DVKTGK--CLKTLPAHSDPVS-AVHF- 181
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 182 NRDGS-------LIVSSSYDGLCRIW 200
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 72 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 128
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 129 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 164
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 17 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 189
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 158
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 197
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 158
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 159 NRDGS-------LIVSSSYDGLCRIW 177
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 49 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 105
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 106 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 141
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 19 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 199
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 160
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 161 NRDGS-------LIVSSSYDGLCRIW 179
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 51 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 107
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 108 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 143
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 38 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 179
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 218
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP----INALVVADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H V + S S
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-DVKTGK--CLKTLPAHSDPVS-AVHF- 179
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 180 NRDGS-------LIVSSSYDGLCRIW 198
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 70 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 126
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 127 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 162
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 16 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 196
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 157
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 158 NRDGS-------LIVSSSYDGLCRIW 176
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 48 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 104
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 105 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 140
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 22 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 194
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 163
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 202
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 163
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 164 NRDGS-------LIVSSSYDGLCRIW 182
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 54 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 110
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 111 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 146
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 21 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 193
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 162
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 201
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 162
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 163 NRDGS-------LIVSSSYDGLCRIW 181
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 53 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 109
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 110 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 145
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 19 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 199
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 160
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 161 NRDGS-------LIVSSSYDGLCRIW 179
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 51 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 107
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 108 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 143
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 16 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 196
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 157
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 158 NRDGS-------LIVSSSYDGLCRIW 176
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 48 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 104
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 105 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 140
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 121 EFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTG 177
+FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 12 KFTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 178 GAVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKV 220
+ NL+V DK +K H + N + + S S D+++++
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 221 WRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262
W ++ KC++T+ AHS+P++A+ DG ++ S+S D R+W
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 153
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 192
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H + V + S S
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382
L+GH++ V C +N ++SGS D + R+W + G+ L L H P+ A+ F
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GK--CLKTLPAHSDPVS-AVHF- 153
Query: 383 GRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 154 NRDGS-------LIVSSSYDGLCRIW 172
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369
K W + ++ + GH + +A S +N ++S S D T ++W G+ L L
Sbjct: 44 KIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS-GK--CLKTLK 100
Query: 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
GH + C F ++ I +GS D +++W V K
Sbjct: 101 GHSNYVFCC-----NFNPQSN----LIVSGSFDESVRIWDVKTGK 136
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 122 FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTGG 178
FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 20 FTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 179 AVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKVW 221
+ NL+V DK +K H + N + + S S D+++++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 222 RIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
++ C++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 199
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP----INALVVADDGVLYSAS 254
+ + + + +A+LD T+K+W KC++T H V + S S
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTM-LAVLVGHRGPIRCAIAF 381
L+GH++ V C +N ++SGS D + R+W D + M L L H P+ A+ F
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW----DVKTGMCLKTLPAHSDPVS-AVHF 160
Query: 382 LGRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 161 -NRDGS-------LIVSSSYDGLCRIW 179
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
H G + S+++ S + D + K+W +R+ C +T H INA+ +G +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
+ SDDAT R++ ++ +L +T + + +
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
W + + G L GH + V CL + V +GS DS ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
H G + S+++ S + D + K+W +R+ C +T H INA+ +G +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
+ SDDAT R++ ++ +L +T + + +
Sbjct: 254 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 305
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
W + + G L GH + V CL + V +GS DS ++W
Sbjct: 306 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
H G + S+++ S + D + K+W +R+ C +T H INA+ +G +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
+ SDDAT R++ ++ +L +T + + +
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
W + + G L GH + V CL + V +GS DS ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
H G + S+++ S + D + K+W +R+ C +T H INA+ +G +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
+ SDDAT R++ ++ +L +T + + +
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
W + + G L GH + V CL + V +GS DS ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY- 251
H G + S+++ S + D + K+W +R+ C +T H INA+ +G +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWH 311
+ SDDAT R++ ++ +L +T + + +
Sbjct: 243 TGSDDATCRLFD--LRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294
Query: 312 KGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVW 354
W + + G L GH + V CL + V +GS DS ++W
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 25/176 (14%)
Query: 122 FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS---TWDNGVKHVKLATIPKTGG 178
FT G KA +S V + + + ++ D I++W + ++ + KL
Sbjct: 20 FTLAGHTKAVSS--VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 179 AVRNLIVG--KDKMMK---------------HMGPITSIAINVSDDTLYSASLDKTIKVW 221
+ NL+V DK +K H + N + + S S D+++++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 222 RIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276
++ C++T+ AHS+P++A+ DG ++ S+S D R+W S L TLI
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLI 191
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 32/210 (15%)
Query: 83 RCISSVLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C+ ++ + C + I +GS +RIW L A + V A+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198
+ D + ++ DG R+W + +G ++ LI + P++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA---------------SGQCLKTLIDDDNP------PVS 199
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VADDGVLYSAS 254
+ + + + +A+LD +K+W KC++T H + V + S S
Sbjct: 200 FVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 255 DDATVRVWR---RYFYSENQLHTLILTLTA 281
+D V +W + + Q HT ++ TA
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 325 LQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTM-LAVLVGHRGPIRCAIAF 381
L+GH++ V C +N ++SGS D + R+W D + M L L H P+ A+ F
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW----DVKTGMCLKTLPAHSDPVS-AVHF 160
Query: 382 LGRFGEETEDEYCTICTGSLDGVLKMW 408
R G I + S DG+ ++W
Sbjct: 161 -NRDGS-------LIVSSSYDGLCRIW 179
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADD 247
+ H + + + S + L SAS D T+K++R + C T++ H + +L
Sbjct: 146 LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205
Query: 248 GV-LYSASDDATVRVWRRYFYSENQ 271
G L S SDD TVR+WR+Y Q
Sbjct: 206 GQRLASCSDDRTVRIWRQYLPGNEQ 230
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL 209
GD +IR+W + D+ + L+ H + +A + + L
Sbjct: 36 GDRRIRIWGTEGDSWICKSVLSE-------------------GHQRTVRKVAWSPCGNYL 76
Query: 210 YSASLDKTIKVWRIR--DSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR 263
SAS D T +W+ D +C+ T++ H + ++ A G +L + S D +V VW
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCIETIQAHSEPINALVV-A 245
+ H + S+A S + L + S DK++ VW + + +C+ + +H++ + +V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160
Query: 246 DDGVLYSASDDATVRVWRR 264
+L SAS D TV+++R
Sbjct: 161 SQELLASASYDDTVKLYRE 179
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 326 QGHTHAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR 376
+GH V +A NY+ S S D+T+ +W + QD + L GH ++
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-FECVTTLEGHENEVK 109
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 88 VLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV 145
VL DGQ F +GS +R+W R T V+++ S D ++
Sbjct: 437 VLSSDGQ---------FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
+A D I++W N + K TI + G R+ + + N
Sbjct: 488 VSASRDRTIKLW-----NTLGECKY-TISEGGEGHRDWV-----------SCVRFSPNTL 530
Query: 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVL-YSASDDATVRVW 262
T+ SAS DKT+KVW + + K T+ H+ ++ + V+ DG L S D V +W
Sbjct: 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 97/251 (38%), Gaps = 48/251 (19%)
Query: 184 IVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI-RDSKCIETIQ----AHSE 237
+V K M H +T+IA + + D + SAS DK+I +W++ +D K Q HS
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSH 431
Query: 238 PINALVVADDGVL-YSASDDATVRVW--------RRYFYSENQLHTLILTLTAKYSPVKX 288
+ +V++ DG S S D +R+W RR+ + ++ +L +
Sbjct: 432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR------ 485
Query: 289 XXXXXXXXXXXXXXXXXXIHYWHK-GWFSAQLQYGGALQGHTHAVMCLASVAN----YVI 343
I W+ G + GG +GH V C+ N ++
Sbjct: 486 --------QIVSASRDRTIKLWNTLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIV 535
Query: 344 SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403
S S D T +VW + + L GH G ++ + C +G DG
Sbjct: 536 SASWDKTVKVWNLSN---CKLRSTLAGHTG-------YVSTVAVSPDGSLC--ASGGKDG 583
Query: 404 VLKMWRVTRPK 414
V+ +W + K
Sbjct: 584 VVLLWDLAEGK 594
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 89/237 (37%), Gaps = 22/237 (9%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV 249
+ H I S+ S D L S S D+T+++W +R +C T+ V DG
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 250 LYSA-SDDATVRVWRRY--FYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXX 306
+A S D VRVW F E +L + + T V
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVE-RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 279
Query: 307 IHYWH----KGWFSAQLQYGGALQ----GHTHAVMCLASVAN--YVISGSADSTSRVWAR 356
+ W+ ++ G + GH V+ +A+ N Y++SGS D W +
Sbjct: 280 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Query: 357 EQDGRHTMLAVLVGHRGP-IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412
+ L +L GHR I A+A G EY TGS D ++W+ +
Sbjct: 340 KS---GNPLLMLQGHRNSVISVAVANGSSLGP----EYNVFATGSGDCKARIWKYKK 389
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 83/211 (39%), Gaps = 42/211 (19%)
Query: 96 LCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV--SHDRVYAAYGDGK 153
+C + F+ TG++ +IRIW L+ + +++ S D++ + GD
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 154 IRVWRS---------TWDNGV----------KHVKLATIPK--------TGGAVRNLIVG 186
+R+W + ++GV K++ ++ + TG V L
Sbjct: 189 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 248
Query: 187 KDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR------DSK------CIETIQA 234
+ H + S+ ++ S SLD+++K+W ++ DSK C T
Sbjct: 249 NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 235 HSE-PINALVVADDGVLYSASDDATVRVWRR 264
H + ++ +D + S S D V W +
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 132 TSMVVAMEVSHDRVYAAYGDGKI-RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM 190
TS+V ++ S+D Y A G K +V+R + +G +L+ NL
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVS--DGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V 249
I S+ + L + + D+ I++W I + K + +Q H + I +L G
Sbjct: 122 SDLY--IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 250 LYSASDDATVRVW 262
L S S D TVR+W
Sbjct: 180 LVSGSGDRTVRIW 192
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 79/194 (40%), Gaps = 18/194 (9%)
Query: 83 RCISSVLKKDG-QILCIAVGNG-FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140
+C ++ +DG + ++ G+G +I GS +R+W +E G L +
Sbjct: 198 QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD----SETGFLVERLDSENESGT 253
Query: 141 SH-DRVYAAY--GDGKIRVWRSTWDNGVKHVKLATIP-KTGGAVRNLIVGKDKMMKHMGP 196
H D VY+ DG+ V + D VK L K+ N + + H
Sbjct: 254 GHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-------GV 249
+ S+A +D+ + S S D+ + W + + +Q H + ++ VA+ V
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 250 LYSASDDATVRVWR 263
+ S D R+W+
Sbjct: 373 FATGSGDCKARIWK 386
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-NALVVADD 247
K++ H GPI+ + N ++ L SAS D T+++W + HS+ I +A V DD
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 248 GVLYSASDDATVRVW 262
V+ S S D +VR+W
Sbjct: 302 KVI-SCSMDGSVRLW 315
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 114 IRIWKQPEFTECGRLKAKTSMVVAMEV--SHDRVYAAYGDGKIRVWRSTWDNGVKHVKLA 171
I +++ E T G+L + +E ++ + +A DG +R+W
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG----------- 277
Query: 172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET 231
G +N G H I S + V DD + S S+D ++++W ++ + +
Sbjct: 278 -----NGNSQNCFYG------HSQSIVSASW-VGDDKVISCSMDGSVRLWSLKQNTLLAL 325
Query: 232 IQAHSEPINALVVADDGVLYS-ASDDATVRVW 262
PI A ++ DG Y+ A D V V+
Sbjct: 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 51/242 (21%)
Query: 195 GPITSI--AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
G +TS+ + D+ + + + DK I+V+ + K + + H + AL A G+L S
Sbjct: 119 GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 253 ASDDATVRVWR-------RYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXX 305
S D TVRVW F N T+ +Y +K
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIK---------YIVTGSRDN 227
Query: 306 XIHYWHKGWFSAQLQYG-------------------GALQGHTHAVMCLASVANYVISGS 346
+H W S+ +G G L+GH +V ++ N V+SGS
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406
D+T VW Q L +L GH I I + E + C + S+D ++
Sbjct: 288 YDNTLIVWDVAQ---MKCLYILSGHTDRIYSTIY-------DHERKRC--ISASMDTTIR 335
Query: 407 MW 408
+W
Sbjct: 336 IW 337
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 14/172 (8%)
Query: 104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDN 163
+I TGS N + +WK P+ + + + + Y G +R ++
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV---GVLRGHMASVRT 275
Query: 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMK-------HMGPITSIAINVSDDTLYSASLDK 216
H I +G LIV MK H I S + SAS+D
Sbjct: 276 VSGH---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 217 TIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYS 268
TI++W + + + + T+Q H+ + L ++D L SA+ D ++R W YS
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYS 383
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 72/172 (41%), Gaps = 20/172 (11%)
Query: 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR----VYAAYGDGKIRVWR 158
G + +GS +R+W + + S V +++ + + D + VW+
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 159 -----STWDNGVKHVK--LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS 211
S D+G +H + P+ ++ G HM + +++ + + + S
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG------HMASVRTVSGH--GNIVVS 285
Query: 212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-GVLYSASDDATVRVW 262
S D T+ VW + KC+ + H++ I + + + SAS D T+R+W
Sbjct: 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 325 LQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383
L GH V L ++SGS D T RVW + + V GH +RC
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK---KGCCTHVFEGHNSTVRCL----- 209
Query: 384 RFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH 419
E +Y I TGS D L +W++ + S H
Sbjct: 210 DIVEYKNIKY--IVTGSRDNTLHVWKLPKESSVPDH 243
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 28/166 (16%)
Query: 261 VWRRYFYSEN-----QLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWF 315
+W++ SEN ++L L L+ KY + + W+ F
Sbjct: 55 LWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFI----LKNWYNPKF 110
Query: 316 SAQLQYGGALQGH-THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP 374
Q L+GH T + CL NYVI+G+ D RV+ L L GH G
Sbjct: 111 VPQRT---TLRGHMTSVITCLQFEDNYVITGADDKMIRVY---DSINKKFLLQLSGHDGG 164
Query: 375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHL 420
+ G + +GS D +++W + K C H+
Sbjct: 165 VWALKYAHG----------GILVSGSTDRTVRVWDI--KKGCCTHV 198
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 35/115 (30%)
Query: 324 ALQGHTHAVMCLASVA----NYVISGSADSTSRVWAREQDGR--------------HT-- 363
+GH V CL V Y+++GS D+T VW ++ HT
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 364 ----MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
+ VL GH +R ++ G + +GS D L +W V + K
Sbjct: 258 ENPYFVGVLRGHMASVR-TVSGHGNI----------VVSGSYDNTLIVWDVAQMK 301
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 33/187 (17%)
Query: 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSM------VVAMEVSHDRVYAAYG--DGKIRV 156
+ TGS +++++WK + RL + S+ VV++++SH AA D IR+
Sbjct: 51 VVTGSLDDLVKVWKWRD----ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 157 WRSTWDNGVKHVK--------LATIPKTGGAVRNLIVGKDKM-----------MKHMGP- 196
W +K + LA P + VGK + + G
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDGVLYSASD 255
I SIA + L S ++D I ++ I K + T++ H+ PI +L + D +L +ASD
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 256 DATVRVW 262
D ++++
Sbjct: 227 DGYIKIY 233
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 90/242 (37%), Gaps = 51/242 (21%)
Query: 195 GPITSI--AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYS 252
G TS+ + D+ + + + DK I+V+ + K + + H + AL A G+L S
Sbjct: 119 GHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 253 ASDDATVRVWR-------RYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXX 305
S D TVRVW F N T+ +Y +K
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNS--TVRCLDIVEYKNIK---------YIVTGSRDN 227
Query: 306 XIHYWHKGWFSAQLQYG-------------------GALQGHTHAVMCLASVANYVISGS 346
+H W S+ +G G L+GH +V ++ N V+SGS
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406
D+T VW Q L +L GH I I + E + C + S D ++
Sbjct: 288 YDNTLIVWDVAQ---XKCLYILSGHTDRIYSTIY-------DHERKRC--ISASXDTTIR 335
Query: 407 MW 408
+W
Sbjct: 336 IW 337
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYS 268
SAS D TI++W + + + T+Q H+ + L ++D L SA+ D ++R W YS
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYS 383
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 325 LQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383
L GH V L ++SGS D T RVW + + V GH +RC
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK---KGCCTHVFEGHNSTVRCL----- 209
Query: 384 RFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH 419
E +Y I TGS D L +W++ + S H
Sbjct: 210 DIVEYKNIKY--IVTGSRDNTLHVWKLPKESSVPDH 243
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 28/166 (16%)
Query: 261 VWRRYFYSEN-----QLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWF 315
+W++ SEN ++L L L+ KY + + W+ F
Sbjct: 55 LWKKLLISENFVSPKGFNSLNLKLSQKYPKL----SQQDRLRLSFLENIFILKNWYNPKF 110
Query: 316 SAQLQYGGALQGH-THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP 374
Q L+GH T + CL NYVI+G+ D RV+ L L GH G
Sbjct: 111 VPQRT---TLRGHXTSVITCLQFEDNYVITGADDKXIRVY---DSINKKFLLQLSGHDGG 164
Query: 375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHL 420
+ G + +GS D +++W + K C H+
Sbjct: 165 VWALKYAHG----------GILVSGSTDRTVRVWDI--KKGCCTHV 198
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 35/115 (30%)
Query: 324 ALQGHTHAVMCLASVA----NYVISGSADSTSRVWAREQDGR--------------HT-- 363
+GH V CL V Y+++GS D+T VW ++ HT
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 364 ----MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414
+ VL GH +R ++ G + +GS D L +W V + K
Sbjct: 258 ENPYFVGVLRGHXASVR-TVSGHGNI----------VVSGSYDNTLIVWDVAQXK 301
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 29/184 (15%)
Query: 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRST 160
G+ F+ T SD IR+W+ + + + K + V + + V A IR R
Sbjct: 900 GSSFL-TSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAV---DHIR--RLQ 953
Query: 161 WDNGVK------------------HVKLATIPKTGGAVRNLIVGKDKMMK----HMGPIT 198
NG H++ GA+ L + +++ + H +
Sbjct: 954 LINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVW 1013
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDAT 258
I + TL S+S D I+VW + KCI ++ H E + + + L S S D T
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLSWSFDGT 1072
Query: 259 VRVW 262
V+VW
Sbjct: 1073 VKVW 1076
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 178 GAVRNLIVGK----DKMMK---HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE 230
GA + L V K +K+++ H + A + D + + S+DK +K+W + +
Sbjct: 640 GADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVH 699
Query: 231 TIQAHSEPINALVVADDG---VLYSASDDATVRVW 262
T HSE +N + +L + S D +++W
Sbjct: 700 TYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDGVLYSASDDATVRVW 262
L + S D +K+W + +C T+ H+ +N + DD +L S S D T+++W
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV-SHDRVYAAYGDGKIRVWRSTWDN 163
+ + SD I++W + +C L+ V + + R+ + DG ++VW
Sbjct: 1024 LISSSDDAEIQVWNW-QLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNII--- 1079
Query: 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI 223
TG ++ + H G + S I+ S S DKT K+W
Sbjct: 1080 ------------TGNKEKDFVC-------HQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 224 RDSKCIETIQAHSEPINALVVADDGVLYSASDD-ATVRVW 262
+ ++ H+ + + D L + DD +R+W
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251
H+ IT + S + L S+S D +K+W ++D T+ H + + + D G +
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 252 SASDDATVRVWR 263
SAS D T+R+W
Sbjct: 198 SASLDGTIRLWE 209
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP---IN--ALVV 244
++ H +T IAI + SASLD TI++W I T P +N AL V
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 236
Query: 245 ADDGVLYSAS 254
D L+ S
Sbjct: 237 GTDRQLHEIS 246
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251
H+ IT + S + L S+S D +K+W ++D T+ H + + + D G +
Sbjct: 135 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 194
Query: 252 SASDDATVRVWR 263
SAS D T+R+W
Sbjct: 195 SASLDGTIRLWE 206
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP---IN--ALVV 244
++ H +T IAI + SASLD TI++W I T P +N AL V
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFV 233
Query: 245 ADDGVLYSAS 254
D L+ S
Sbjct: 234 GTDRQLHEIS 243
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD--KMMKHMGPITSIA 201
RV+A+ I +W + D + T G + + GK+ + H +T +A
Sbjct: 200 RVFAS--SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVA 257
Query: 202 IN-VSDDTLYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDGV-LYSASDD 256
+N D L +AS+D+T+K+W +R + + H P+NA + DG L +
Sbjct: 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317
Query: 257 ATVRVW 262
+ +RV+
Sbjct: 318 SEIRVY 323
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD--KMMKHMGPITSIA 201
RV+A+ I +W + D + T G + + GK+ + H +T +A
Sbjct: 200 RVFAS--SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVA 257
Query: 202 IN-VSDDTLYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDGV-LYSASDD 256
+N D L +AS+D+T+K+W +R + + H P+NA + DG L +
Sbjct: 258 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317
Query: 257 ATVRVW 262
+ +RV+
Sbjct: 318 SEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD--KMMKHMGPITSIA 201
RV+A+ I +W + D + T G + + GK+ + H +T +A
Sbjct: 201 RVFAS--SDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVA 258
Query: 202 IN-VSDDTLYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDGV-LYSASDD 256
+N D L +AS+D+T+K+W +R + + H P+NA + DG L +
Sbjct: 259 LNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 318
Query: 257 ATVRVW 262
+ +RV+
Sbjct: 319 SEIRVY 324
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 87 SVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV---SHD 143
+++ G + ++ +G + +GS ++WK+ L+A + V +V S +
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVY--NLQAHNASVWDAKVVSFSEN 156
Query: 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN 203
+ A D I++W++ + KT + N +V +H+
Sbjct: 157 KFLTASADKTIKLWQND-----------KVIKTFSGIHNDVV------RHLAV------- 192
Query: 204 VSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWR 263
V D S S D IK+ + T + H + + + +G + S +D TVR+W
Sbjct: 193 VDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWS 252
Query: 264 RYFYSENQLHTL 275
+ S Q+ TL
Sbjct: 253 KENGSLKQVITL 264
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 184 IVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIR-DSKCIETIQAHSEPINA 241
I G + H + S++IN + ++ S S D T+++W +R S+ + T H IN+
Sbjct: 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINS 254
Query: 242 LVVADDGVLY-SASDDATVRVW 262
+ DG + + SDD T R++
Sbjct: 255 VKFFPDGQRFGTGSDDGTCRLF 276
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 327 GHTHAVMCLA---SVANYVISGSADSTSRVWAREQDGRHTMLAVLV--GHRGPIRCAIAF 381
GHT V+ L+ AN ISGS D+T R+W D R T AV GH G I ++ F
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLW----DLRITSRAVRTYHGHEGDIN-SVKF 257
Query: 382 L---GRFGEETEDEYCTI 396
RFG ++D C +
Sbjct: 258 FPDGQRFGTGSDDGTCRL 275
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 136 VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG 195
VA +S ++A Y +G VW + LA + G ++N H G
Sbjct: 304 VAFSISGRLLFAGYSNGDCYVWDTL---------LAEMVLNLGTLQN---------SHEG 345
Query: 196 PITSIAINVSDDTLYSASLDKTIKVW 221
I+ + ++ L + S DK +K+W
Sbjct: 346 RISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDAT 258
+A + + +T S DK VW +R +C++ + H +N++ G + S SDDAT
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 259 VRVW 262
R++
Sbjct: 264 CRLY 267
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDD 256
+S+ ++S L++ D TI VW + + + H ++ L V+ DG + S S D
Sbjct: 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347
Query: 257 ATVRVW 262
T+RVW
Sbjct: 348 HTLRVW 353
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 26/166 (15%)
Query: 99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVW 157
A G I + DS VI++W + + L+A V + D R+ + DG ++VW
Sbjct: 1020 ADGKTLISSSEDS-VIQVWNW-QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1077
Query: 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT 217
TG R+ H G + S AI+ S S DKT
Sbjct: 1078 NVI---------------TGRIERDFTC-------HQGTVLSCAISSDATKFSSTSADKT 1115
Query: 218 IKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDD-ATVRVW 262
K+W + ++ H+ + + DG+L + DD +R+W
Sbjct: 1116 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDGVLYSASDDATVRVW 262
L + S D +K+W + +C T+ H+ +N + DD +L S S D T+R+W
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG---V 249
H + A + D + + S DK +K+W K + T HSE +N + +
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 250 LYSASDDATVRVW 262
L + S+D +++W
Sbjct: 723 LATGSNDFFLKLW 735
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 335 LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394
++S A S SAD T+++W+ + + L L GH G +RC+ L
Sbjct: 1100 ISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGI--------- 1147
Query: 395 TICTGSLDGVLKMWRVT 411
+ TG +G +++W V+
Sbjct: 1148 LLATGDDNGEIRIWNVS 1164
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 23/153 (15%)
Query: 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVV-ADDGVLYSASDDATVRVWRR----- 264
S DKT++V++ + + I+AH + + +DD + + S D V++W
Sbjct: 639 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 698
Query: 265 -YFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQLQYGG 323
+ Y E+ T K + + ++ K W Q +
Sbjct: 699 VHTYDEHSEQVNCCHFTNKSNHLLLATGSN--------------DFFLKLWDLNQKECRN 744
Query: 324 ALQGHTHAV-MCLASVANYVI-SGSADSTSRVW 354
+ GHT++V C S + ++ S SAD T R+W
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 218 IKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWR 263
+++W I + + H ++ ++ + DG + +ASDD T+RVW
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 26/166 (15%)
Query: 99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVW 157
A G I + DS VI++W + + L+A V + D R+ + DG ++VW
Sbjct: 1013 ADGKTLISSSEDS-VIQVWNW-QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070
Query: 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKT 217
TG R+ H G + S AI+ S S DKT
Sbjct: 1071 NVI---------------TGRIERDFTC-------HQGTVLSCAISSDATKFSSTSADKT 1108
Query: 218 IKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDD-ATVRVW 262
K+W + ++ H+ + + DG+L + DD +R+W
Sbjct: 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDGVLYSASDDATVRVW 262
L + S D +K+W + +C T+ H+ +N + DD +L S S D T+R+W
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG---V 249
H + A + D + + S DK +K+W K + T HSE +N + +
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 250 LYSASDDATVRVW 262
L + S+D +++W
Sbjct: 716 LATGSNDFFLKLW 728
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 335 LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394
++S A S SAD T+++W+ + + L L GH G +RC+ L
Sbjct: 1093 ISSDATKFSSTSADKTAKIWSFD---LLSPLHELKGHNGCVRCSAFSLDGI--------- 1140
Query: 395 TICTGSLDGVLKMWRVT 411
+ TG +G +++W V+
Sbjct: 1141 LLATGDDNGEIRIWNVS 1157
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 23/153 (15%)
Query: 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVV-ADDGVLYSASDDATVRVWRR----- 264
S DKT++V++ + + I+AH + + +DD + + S D V++W
Sbjct: 632 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL 691
Query: 265 -YFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXXXXIHYWHKGWFSAQLQYGG 323
+ Y E+ T K + + ++ K W Q +
Sbjct: 692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSN--------------DFFLKLWDLNQKECRN 737
Query: 324 ALQGHTHAV-MCLASVANYVI-SGSADSTSRVW 354
+ GHT++V C S + ++ S SAD T R+W
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 218 IKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWR 263
+++W I + + H ++ ++ + DG + +ASDD T+RVW
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTWD 162
I +GSD N + I++ P F T V ++ + D ++A+ G DG I ++
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY----- 217
Query: 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR 222
NGV K +++N+ H G + + + + SAS DKTIK+W
Sbjct: 218 NGVDGTKTGVFEDD--SLKNV--------AHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Query: 223 IRDSKCIETI 232
+ K +TI
Sbjct: 268 VATLKVEKTI 277
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS----KCIETIQAHSEPINALVV-ADD 247
H + +A + L + S DK++ +W +S +CI +Q HS+ + ++ +
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 248 GVLYSASDDATVRVWRRY 265
+L S+S D TVR+W+ Y
Sbjct: 166 ALLASSSYDDTVRIWKDY 183
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS--KCIETIQAHSEPI-NALVVAD 246
+ +H + + + S+ L S+S D T+++W+ D +C+ + H + ++
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
Query: 247 DGV--LYSASDDATVRVWR 263
+GV L S SDD+TVRVW+
Sbjct: 209 EGVFRLCSGSDDSTVRVWK 227
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 344 SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403
S S D T R+W ++ D +AVL GH G + + F ++TE + +C+GS D
Sbjct: 170 SSSYDDTVRIW-KDYDDDWECVAVLNGHEGTV-----WSSDF-DKTEGVF-RLCSGSDDS 221
Query: 404 VLKMWR 409
+++W+
Sbjct: 222 TVRVWK 227
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 90/266 (33%), Gaps = 41/266 (15%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVW-------RIRDSKCIETIQAHSEPINALVVA 245
H I S+A L + S D T+ +W R + + I+ H + + +
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKXXXXXXXXXXXXXXXXX 304
+DG L + S D +V +W E + I L VK
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEE--YECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 305 XXIHYWHKGWFSAQLQYGGALQGHTHAVMC----LASVANYVISGSADSTSRVW---ARE 357
+ W + + L GH V + SGS DST RVW +
Sbjct: 175 DTVRIWKD--YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 358 QDGRHTML--AVL--VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM------ 407
+D + + A+L V R A F G I + DGVL +
Sbjct: 233 EDDQQEWVCEAILPDVHKRQVYNVAWGFNG-----------LIASVGADGVLAVYEEVDG 281
Query: 408 -WRVTRPKSSCGHLNKTNGHEYFELQ 432
W+V ++ C + + N ++ EL
Sbjct: 282 EWKVFAKRALCHGVYEINVVKWLELN 307
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 178 GAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI--RDSKC---IET 231
GA ++V + + H G +TS+A + + L SAS DKT+ W++ D K + +
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 232 IQAHSEPI-NALVVADDGVLYSASDDATVRVW 262
+ HS + + + AD SAS D T+R+W
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWRRYF 266
T+ SA DK +K W + + H+ IN L + DG L SA D + +W
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--L 225
Query: 267 YSENQLHTL 275
++ ++TL
Sbjct: 226 AAKKAMYTL 234
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 327 GHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
GH VM + A+ +ISGS D T +VW + LA L+GH +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVP-- 158
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTR 412
E+ +D+ TI + D ++K W + +
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLNQ 185
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 178 GAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI--RDSKC---IET 231
GA ++V + + H G +TS+A + + L SAS DKT+ W++ D K + +
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 232 IQAHSEPI-NALVVADDGVLYSASDDATVRVW 262
+ HS + + + AD SAS D T+R+W
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWRRYF 266
T+ SA DK +K W + + H+ IN L + DG L SA D + +W
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--L 225
Query: 267 YSENQLHTL 275
++ ++TL
Sbjct: 226 AAKKAMYTL 234
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 327 GHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
GH VM + A+ +ISGS D T +VW + LA L+GH +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVP-- 158
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTR 412
E+ +D+ TI + D ++K W + +
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLNQ 185
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 199 SIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGV-LYSASDDA 257
++AI+ +S D I VW + + + Q H++ + + +++DG L++ D
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 258 TVRVW 262
TVR W
Sbjct: 206 TVRSW 210
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 193 HMGPITSIAINVS-DDTLYSASLDKTIKVWRI-RDSKCI----ETIQAHSEPINALVVAD 246
H G +T IA D + SAS DKTI +W++ RD ++ HS ++ +V++
Sbjct: 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96
Query: 247 DGVL-YSASDDATVRVW 262
DG S S D T+R+W
Sbjct: 97 DGQFALSGSWDGTLRLW 113
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 31/178 (17%)
Query: 88 VLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV 145
V+ DGQ F +GS +R+W T R T V+++ S D ++
Sbjct: 93 VISSDGQ---------FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
+ D I++W T G + + +D+ + N S
Sbjct: 144 VSGSRDKTIKLW-----------------NTLGVCKYTV--QDESHSEWVSCVRFSPNSS 184
Query: 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVL-YSASDDATVRVW 262
+ + S DK +KVW + + K H+ +N + V+ DG L S D +W
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 324 ALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381
AL+GH+H V + ++S + +SGS D T R+W T VGH + ++AF
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDV-LSVAF 136
Query: 382 LGRFGEETEDEYCTICTGSLDGVLKMWR 409
+ I +GS D +K+W
Sbjct: 137 --------SSDNRQIVSGSRDKTIKLWN 156
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 315 FSAQLQYGGALQGHTHAVMCLASVANY---VISGSADSTSRVWAREQDGRHTMLA--VLV 369
+ Q+ G L+GH V +A+ + ++S S D T +W +D + + L
Sbjct: 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 83
Query: 370 GHRGPIR-CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411
GH + I+ G+F +GS DG L++W +T
Sbjct: 84 GHSHFVSDVVISSDGQFA----------LSGSWDGTLRLWDLT 116
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 193 HMGPITSIAINVS-DDTLYSASLDKTIKVWRI-RDSKCI----ETIQAHSEPINALVVAD 246
H G +T IA D + SAS DKTI +W++ RD ++ HS ++ +V++
Sbjct: 14 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 73
Query: 247 DGVL-YSASDDATVRVW 262
DG S S D T+R+W
Sbjct: 74 DGQFALSGSWDGTLRLW 90
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 31/178 (17%)
Query: 88 VLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV 145
V+ DGQ F +GS +R+W T R T V+++ S D ++
Sbjct: 70 VISSDGQ---------FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
+ D I++W T G + + +D+ + N S
Sbjct: 121 VSGSRDKTIKLW-----------------NTLGVCKYTV--QDESHSEWVSCVRFSPNSS 161
Query: 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVL-YSASDDATVRVW 262
+ + S DK +KVW + + K H+ +N + V+ DG L S D +W
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 324 ALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381
AL+GH+H V + ++S + +SGS D T R+W T VGH + ++AF
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG---TTTRRFVGHTKDV-LSVAF 113
Query: 382 LGRFGEETEDEYCTICTGSLDGVLKMW 408
+ I +GS D +K+W
Sbjct: 114 --------SSDNRQIVSGSRDKTIKLW 132
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 315 FSAQLQYGGALQGHTHAVMCLASVANY---VISGSADSTSRVWAREQDGRHTMLA--VLV 369
+ Q+ G L+GH V +A+ + ++S S D T +W +D + + L
Sbjct: 1 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR 60
Query: 370 GHRGPIR-CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411
GH + I+ G+F +GS DG L++W +T
Sbjct: 61 GHSHFVSDVVISSDGQFA----------LSGSWDGTLRLWDLT 93
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWD 162
+I GSD IR++ + +A + ++ V + Y G + V W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVW 221
N A+ G H + +A N D T S LD+T+KVW
Sbjct: 128 NN-------------WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 222 RIRDSKCIETIQAHSEP----INALVVADDGVLYSASDDATVRVW 262
+ S T+ E ++ + D + +ASDD T+++W
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPIN-ALVVADDGVLYSASDDATVRVWRRYFY 267
+ +AS D TIK+W + C+ T++ H ++ A+ ++ S S+D T+++W Y
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGG---AVRN-LIVGKDKMM---------------- 191
G++ +W V+ +++ P G A +N +IVG D
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVV--ADDG 248
H I SIA++ + + S S D T+K+W ++ +E T + H + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 249 VLYSASDDATVRVW 262
S D TV+VW
Sbjct: 155 TFASGCLDRTVKVW 168
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400
YV+SGS D T ++W E + + GH + C +AF + T +G
Sbjct: 111 YVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMC-VAF-------NPKDPSTFASGC 160
Query: 401 LDGVLKMWRVTRPKSSCGHLNKTNGHE 427
LD +K+W + + S + T G E
Sbjct: 161 LDRTVKVWSLGQ---STPNFTLTTGQE 184
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 310 WHKGWFSAQLQYGGALQGHTHAVMCLA---SVANYVISGSADSTSRVWAREQ 358
W W Q +GH H VMC+A + SG D T +VW+ Q
Sbjct: 126 WENNWALEQ-----TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWD 162
+I GSD IR++ + +A + ++ V + Y G + V W+
Sbjct: 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127
Query: 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVW 221
N A+ G H + +A N D T S LD+T+KVW
Sbjct: 128 NN-------------WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 222 RIRDSKCIETIQAHSEP----INALVVADDGVLYSASDDATVRVW 262
+ S T+ E ++ + D + +ASDD T+++W
Sbjct: 169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPIN-ALVVADDGVLYSASDDATVRVWRRYFY 267
+ +AS D TIK+W + C+ T++ H ++ A+ ++ S S+D T+++W Y
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGG---AVRN-LIVGKDKMM---------------- 191
G++ +W V+ +++ P G A +N +IVG D
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVV--ADDG 248
H I SIA++ + + S S D T+K+W ++ +E T + H + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 249 VLYSASDDATVRVW 262
S D TV+VW
Sbjct: 155 TFASGCLDRTVKVW 168
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400
YV+SGS D T ++W E + + GH + C +AF + T +G
Sbjct: 111 YVLSGSDDLTVKLWNWENNW--ALEQTFEGHEHFVMC-VAF-------NPKDPSTFASGC 160
Query: 401 LDGVLKMWRVTRPKSSCGHLNKTNGHE 427
LD +K+W + + S + T G E
Sbjct: 161 LDRTVKVWSLGQ---STPNFTLTTGQE 184
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 310 WHKGWFSAQLQYGGALQGHTHAVMCLA---SVANYVISGSADSTSRVWAREQ 358
W W Q +GH H VMC+A + SG D T +VW+ Q
Sbjct: 126 WENNWALEQ-----TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWR 158
G+GF N + IWK P + LK TS V+++ +S D V +A D +R+WR
Sbjct: 338 GHGFA-----QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWR 158
G+GF N + IWK P + LK TS V+++ +S D V +A D +R+WR
Sbjct: 349 GHGFA-----QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWR 158
G+GF N + IWK P + LK TS V+++ +S D V +A D +R+WR
Sbjct: 258 GHGFA-----QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA---LVVADDGV 249
H GP+ + + +++AS DKT K+W + ++ I+ Q H P+ + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSC 143
Query: 250 LYSASDDATVRVW 262
+ + S D T++ W
Sbjct: 144 VMTGSWDKTLKFW 156
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 324 ALQGHTHAVM--CLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381
A Q HT V+ C + + V + S D T+++W D + H P++ I +
Sbjct: 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW----DLSSNQAIQIAQHDAPVK-TIHW 135
Query: 382 LGRFGEETEDEYCTICTGSLDGVLKMW 408
+ Y + TGS D LK W
Sbjct: 136 I------KAPNYSCVMTGSWDKTLKFW 156
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPIN-ALVVADDGVLYSASDDATVRVWRRYFY 267
+ +AS D TIK+W + C+ T++ H ++ A+ ++ S S+D T+++W Y
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 24/164 (14%)
Query: 104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDN 163
+I GSD IR++ + +A + ++ V + Y G + V W+N
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWR 222
A+ G H + +A N D T S LD+T+KVW
Sbjct: 129 N-------------WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Query: 223 IRDSKCIETIQAHSEP----INALVVADDGVLYSASDDATVRVW 262
+ S T+ E ++ + D + +ASDD T+++W
Sbjct: 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGG---AVRN-LIVGKDKMM---------------- 191
G++ +W V+ +++ P G A +N +IVG D
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVV--ADDG 248
H I SIA++ + + S S D T+K+W ++ +E T + H + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 249 VLYSASDDATVRVW 262
S D TV+VW
Sbjct: 155 TFASGCLDRTVKVW 168
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400
YV+SGS D T ++W E + + GH + C +AF + T +G
Sbjct: 111 YVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMC-VAF-------NPKDPSTFASGC 160
Query: 401 LDGVLKMWRVTRPKSSCGHLNKTNGHE 427
LD +K+W + + S + T G E
Sbjct: 161 LDRTVKVWSLGQ---STPNFTLTTGQE 184
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 310 WHKGWFSAQLQYGGALQGHTHAVMCLA---SVANYVISGSADSTSRVWAREQ 358
W W Q +GH H VMC+A + SG D T +VW+ Q
Sbjct: 126 WENNWALEQ-----TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD-DATVRVW 262
+ S D +KVW + + + ++ H+ + ++ V+ DG L ++SD D R+W
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DD 247
++ H ++ +A++ + + SAS D ++++W +++ +C H++ + ++ + D+
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 248 GVLYSASDDATVRVW 262
+ S D +RVW
Sbjct: 122 RQIVSGGRDNALRVW 136
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 34/168 (20%)
Query: 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGD--GKIRVWRSTWD 162
I +G N++++W LK T+ V ++ VS D A D G R+W T
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT-- 226
Query: 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR 222
G A+ + G PI I + + A+ +K I+++
Sbjct: 227 -------------KGEALSEMAAG--------APINQICFS-PNRYWMCAATEKGIRIFD 264
Query: 223 IRDSKCIETIQAHSEPINALV--------VADDGVLYSASDDATVRVW 262
+ + I + + +V AD LYS D +RVW
Sbjct: 265 LENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPIN-ALVVADDGVLYSASDDATVRVWRRYFY 267
+ +AS D TIK+W + C+ T++ H ++ A+ ++ S S+D T+++W Y
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 24/164 (14%)
Query: 104 FIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDN 163
+I GSD IR++ + +A + ++ V + Y G + V W+N
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWR 222
A+ G H + +A N D T S LD+T+KVW
Sbjct: 129 N-------------WALEQTFEG------HEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Query: 223 IRDSKCIETIQAHSEP----INALVVADDGVLYSASDDATVRVW 262
+ S T+ E ++ + D + +ASDD T+++W
Sbjct: 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 23/134 (17%)
Query: 152 GKIRVWRSTWDNGVKHVKLATIPKTGG---AVRN-LIVGKDKMM---------------- 191
G++ +W V+ +++ P G A +N +IVG D
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVV--ADDG 248
H I SIA++ + + S S D T+K+W ++ +E T + H + + D
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 249 VLYSASDDATVRVW 262
S D TV+VW
Sbjct: 155 TFASGCLDRTVKVW 168
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400
YV+SGS D T ++W E + + GH + C +AF + T +G
Sbjct: 111 YVLSGSDDLTVKLWNWENN--WALEQTFEGHEHFVMC-VAF-------NPKDPSTFASGC 160
Query: 401 LDGVLKMWRVTRPKSSCGHLNKTNGHE 427
LD +K+W + + S + T G E
Sbjct: 161 LDRTVKVWSLGQ---STPNFTLTTGQE 184
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 310 WHKGWFSAQLQYGGALQGHTHAVMCLA---SVANYVISGSADSTSRVWAREQ 358
W W Q +GH H VMC+A + SG D T +VW+ Q
Sbjct: 126 WENNWALEQ-----TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240
LIV K +H ++++++ S S S D IKVW + + + +AH+ +
Sbjct: 114 ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173
Query: 241 ALVVA--DDGVLYSASDDATVRVW 262
+ + D V S S+D + +W
Sbjct: 174 CVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 179 AVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI--RDSKC---IETI 232
A ++V + + H G +TS+A + + L SAS DKT+ W++ D K + +
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 233 QAHSEPI-NALVVADDGVLYSASDDATVRVW 262
+ HS + + + AD SAS D T+R+W
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWR 263
T+ SA DK +K W + + H+ IN L + DG L SA D + +W
Sbjct: 168 TIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 339 ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT 398
A+ +ISGS D T +VW + LA L+GH + E+ +D+ TI +
Sbjct: 119 ASXIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVP---NEKADDDSVTIIS 171
Query: 399 GSLDGVLKMWRVTR 412
D +K W + +
Sbjct: 172 AGNDKXVKAWNLNQ 185
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 179 AVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI--RDSKC---IETI 232
A ++V + + H G +TS+A + + L SAS DKT+ W++ D K + +
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 233 QAHSEPI-NALVVADDGVLYSASDDATVRVW 262
+ HS + + + AD SAS D T+R+W
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 327 GHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
GH VM + A+ +ISGS D T +VW + LA L+GH +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVP-- 158
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTR 412
E+ +D+ TI + D ++K W + +
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLNQ 185
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWRRYF 266
T+ SA DK +K W + + H+ IN L + DG L SA D + +W
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--L 225
Query: 267 YSENQLHTL 275
++ ++TL
Sbjct: 226 AAKKAMYTL 234
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 179 AVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI--RDSKC---IETI 232
A ++V + + H G +TS+A + + L SAS DKT+ W++ D K + +
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 233 QAHSEPI-NALVVADDGVLYSASDDATVRVW 262
+ HS + + + AD SAS D T+R+W
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWRRYF 266
T+ SA DK +K W + + H+ IN L + DG L SA D + +W
Sbjct: 168 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--L 225
Query: 267 YSENQLHTL 275
++ ++TL
Sbjct: 226 AAKKAMYTL 234
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 327 GHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
GH VM + A+ +ISGS D T +VW + LA L+GH +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVP-- 158
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTR 412
E+ +D+ TI + D ++K W + +
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLNQ 185
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 30/178 (16%)
Query: 86 SSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRV 145
S +L K+G I + +D +V +K E EC K + D+V
Sbjct: 24 SPILAKNGTIYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGKDGTIY---FGSDKV 80
Query: 146 YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205
YA DG + WR + IV + + + +TS
Sbjct: 81 YAINPDGTEK-WRFD-------------------TKKAIVSDFTIFEDILYVTS-----X 115
Query: 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWR 263
D LY+ + D T K WR + K I SE V ++D LY+ + D T + WR
Sbjct: 116 DGHLYAINTDGTEK-WRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPDGTEK-WR 171
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 184 IVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRI--RDSKC---IETIQAHSE 237
+V + + H G +TS+A + + L SAS DKT+ W++ D K + + + HS
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 238 PI-NALVVADDGVLYSASDDATVRVW 262
+ + + AD SAS D T+R+W
Sbjct: 61 IVQDCTLTADGAYALSASWDKTLRLW 86
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLY-SASDDATVRVWRRYF 266
T+ SA DK +K W + + H+ IN L + DG L SA D + +W
Sbjct: 162 TIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN--L 219
Query: 267 YSENQLHTL 275
++ ++TL
Sbjct: 220 AAKKAMYTL 228
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 327 GHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384
GH VM + A+ +ISGS D T +VW + LA L+GH +
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVP-- 152
Query: 385 FGEETEDEYCTICTGSLDGVLKMWRVTR 412
E+ +D+ TI + D ++K W + +
Sbjct: 153 -NEKADDDSVTIISAGNDKMVKAWNLNQ 179
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240
+L+V K +H + ++++ S D ++KVW + +++ AHS +N
Sbjct: 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185
Query: 241 ALVV--ADDGVLYSASDDATVRVW 262
+ D + S +D + +W
Sbjct: 186 CVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG 248
K+ H P+T + N D L+S S D + VW + + + T+ H+ I ++ V D
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-DCF 85
Query: 249 VLY--SASDDATVRVW 262
Y + S D ++++W
Sbjct: 86 TKYCVTGSADYSIKLW 101
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 314 WFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVW 354
W+S + G L GHT + + + Y ++GSAD + ++W
Sbjct: 59 WYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET 231
H G I SI ++ + S D +IK+W + + +C+ T
Sbjct: 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 102 NGFIYTGSDSNVIRIW------KQPEFTECGRL-KAKTSMV--VAMEVSHDRVYAAYGDG 152
NG++ + SD + I +W K+ + + T++V VA + H+ ++ + D
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 153 -KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSDDTLY 210
K+ +W + +N K + H + ++ N S+ L
Sbjct: 258 QKLMIWDTRNNNTSK-------------------PSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 211 SASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVA--DDGVLYSASDDATVRVWRRYFY 267
+ S DKT+ +W +R+ K + + ++H + I + + ++ +L S+ D + VW
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 358
Query: 268 SENQ 271
E Q
Sbjct: 359 GEEQ 362
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 102 NGFIYTGSDSNVIRIW------KQPEFTECGRL-KAKTSMV--VAMEVSHDRVYAAYGDG 152
NG++ + SD + I +W K+ + + T++V VA + H+ ++ + D
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 153 -KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSDDTLY 210
K+ +W + +N K + H + ++ N S+ L
Sbjct: 254 QKLMIWDTRNNNTSK-------------------PSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 211 SASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVA--DDGVLYSASDDATVRVWRRYFY 267
+ S DKT+ +W +R+ K + + ++H + I + + ++ +L S+ D + VW
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354
Query: 268 SENQ 271
E Q
Sbjct: 355 GEEQ 358
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 78/184 (42%), Gaps = 33/184 (17%)
Query: 102 NGFIYTGSDSNVIRIW------KQPEFTECGRL-KAKTSMV--VAMEVSHDRVYAAYGDG 152
NG++ + SD + I +W K+ + + T++V VA + H+ ++ + D
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 153 -KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSDDTLY 210
K+ +W + +N K + H + ++ N S+ L
Sbjct: 256 QKLMIWDTRNNNTSK-------------------PSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 211 SASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVA--DDGVLYSASDDATVRVWRRYFY 267
+ S DKT+ +W +R+ K + + ++H + I + + ++ +L S+ D + VW
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 356
Query: 268 SENQ 271
E Q
Sbjct: 357 GEEQ 360
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI 239
H + S++ N S +TL SA D ++ W ++ + I T+ H + I
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI 239
H + S++ N S +TL SA D ++ W ++ + I T+ H + I
Sbjct: 290 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|1NTL|A Chain A, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1NTL|B Chain B, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
Length = 551
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 204 VSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI--NALVVADDGVLYSASDDATVRV 261
V + +LY S D I VW +CIE + P NA++++++ L+S D R
Sbjct: 168 VGEPSLYCTSNDGEIGVWSGPPPQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRC 227
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/103 (18%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDG 248
+ H ++ +A++ + S+S DKT+++W +R + H + ++ + D+
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 249 VLYSASDDATVRVWR-----RYFYSENQLHTLILTLTAKYSPV 286
+ SA + +++W ++ +E + H+ ++ +YSP+
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV-RYSPI 173
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 185 VGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQA---HSEPIN 240
+ K+K+ H +T N D L ++S+D T+K+W +R+ K + A H +P+N
Sbjct: 196 IFKEKL--HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 253
Query: 241 ALVV--ADDGVLYSASDDATVRVWRRYFYSE 269
A D L + +RV+ Y +S+
Sbjct: 254 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 284
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 185 VGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQA---HSEPIN 240
+ K+K+ H +T N D L ++S+D T+K+W +R+ K + A H +P+N
Sbjct: 197 IFKEKL--HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVN 254
Query: 241 ALVV--ADDGVLYSASDDATVRVWRRYFYSE 269
A D L + +RV+ Y +S+
Sbjct: 255 AAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 193 HMGPITSIAIN-VSDDTLYSASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVA--DDG 248
H + ++ N S+ L + S DKT+ +W +R+ K + T ++H + I + + ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 249 VLYSASDDATVRVWRRYFYSENQ 271
+L S+ D + VW E Q
Sbjct: 334 ILASSGTDRRLNVWDLSKIGEEQ 356
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 193 HMGPITSIAIN-VSDDTLYSASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVA--DDG 248
H + ++ N S+ L + S DKT+ +W +R+ K + T ++H + I + + ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 249 VLYSASDDATVRVWRRYFYSENQ 271
+L S+ D + VW E Q
Sbjct: 334 ILASSGTDRRLNVWDLSKIGEEQ 356
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 334 CLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF---LGRFGEETE 390
C + + ++ SA + ++ R +DG+ + A L GH+ IR +I++ +GR+
Sbjct: 174 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR-SISWAPSIGRW----- 227
Query: 391 DEYCTICTGSLDGVLKMWRVTR---PKSSCGHLNKTN 424
Y I TG DG ++++++T P +S L +N
Sbjct: 228 --YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 262
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 334 CLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF---LGRFGEETE 390
C + + ++ SA + ++ R +DG+ + A L GH+ IR +I++ +GR+
Sbjct: 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR-SISWAPSIGRW----- 229
Query: 391 DEYCTICTGSLDGVLKMWRVTR---PKSSCGHLNKTN 424
Y I TG DG ++++++T P +S L +N
Sbjct: 230 --YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 264
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 334 CLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF---LGRFGEETE 390
C + + ++ SA + ++ R +DG+ + A L GH+ IR +I++ +GR+
Sbjct: 176 CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR-SISWAPSIGRW----- 229
Query: 391 DEYCTICTGSLDGVLKMWRVTR---PKSSCGHLNKTN 424
Y I TG DG ++++++T P +S L +N
Sbjct: 230 --YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 264
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 103 GFIYTGSDSNVIRIWKQPEFTECGRL-KAKTSMV--------VAMEVSHDRVYAAYGDG- 152
G + + SD + I +W + G++ AKT V+ + H+ ++ + D
Sbjct: 191 GHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQ 250
Query: 153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN-VSDDTLYS 211
K+ +W + +N K + H + ++ N S+ L +
Sbjct: 251 KLMIWDTRSNNTSK-------------------PSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 212 ASLDKTIKVWRIRDSKC-IETIQAHSEPINALVVA--DDGVLYSASDDATVRVWRRYFYS 268
S DKT+ +W +R+ K + + ++H + I + + ++ +L S+ D + VW
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIG 351
Query: 269 ENQ 271
E Q
Sbjct: 352 EEQ 354
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 352 RVWA-REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410
++W R+Q + + L G R P+ C + ++ + TG DG+L +W V
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCV--------DRHPNQQHVVATGGQDGMLSIWDV 266
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255
P+ SI + LY+A D I W ++ K I+ +E + D +L A+
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 256 DATVR 260
D T +
Sbjct: 313 DDTFK 317
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255
P+ SI + LY+A D I W ++ K I+ +E + D +L A+
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 256 DATVR 260
D T +
Sbjct: 313 DDTFK 317
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255
P+ SI + LY+A D I W ++ K I+ +E + D +L A+
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 256 DATVR 260
D T +
Sbjct: 313 DDTFK 317
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%)
Query: 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255
P+ SI + LY+A D I W ++ K I+ +E + D +L A+
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 256 DATVR 260
D T +
Sbjct: 313 DDTFK 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,675,815
Number of Sequences: 62578
Number of extensions: 479709
Number of successful extensions: 1558
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 398
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)