Query 046226
Match_columns 434
No_of_seqs 793 out of 4093
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 09:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 9.4E-53 2E-57 347.5 24.5 321 45-409 105-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.1E-50 4.5E-55 333.6 26.5 296 79-416 102-444 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-49 4.8E-54 331.5 22.2 281 85-409 168-458 (459)
4 KOG0286 G-protein beta subunit 100.0 5.9E-44 1.3E-48 285.5 31.8 292 81-409 44-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-44 5E-49 301.5 19.7 271 53-355 173-458 (459)
6 KOG0315 G-protein beta subunit 100.0 2.9E-42 6.4E-47 269.7 30.1 285 103-424 11-301 (311)
7 KOG0285 Pleiotropic regulator 100.0 4.4E-42 9.6E-47 282.0 27.5 297 75-413 134-441 (460)
8 KOG0279 G protein beta subunit 100.0 2.7E-41 5.8E-46 268.6 30.1 284 82-411 5-313 (315)
9 KOG0286 G-protein beta subunit 100.0 1.7E-40 3.8E-45 265.7 24.4 278 48-355 48-343 (343)
10 KOG0318 WD40 repeat stress pro 100.0 1.5E-38 3.3E-43 273.7 35.3 355 49-416 141-565 (603)
11 KOG0281 Beta-TrCP (transducin 100.0 3.1E-41 6.8E-46 276.2 17.8 281 91-419 196-485 (499)
12 KOG0315 G-protein beta subunit 100.0 3.3E-39 7.2E-44 252.6 28.3 286 66-381 9-309 (311)
13 KOG0645 WD40 repeat protein [G 100.0 1.8E-38 4E-43 251.5 32.7 291 82-411 4-311 (312)
14 KOG0295 WD40 repeat-containing 100.0 5.7E-40 1.2E-44 270.2 22.7 288 79-410 95-405 (406)
15 KOG0319 WD40-repeat-containing 100.0 1.5E-39 3.3E-44 290.5 23.9 354 47-417 96-583 (775)
16 KOG0284 Polyadenylation factor 100.0 2.9E-40 6.4E-45 275.7 17.8 279 91-412 95-381 (464)
17 KOG0265 U5 snRNP-specific prot 100.0 9E-39 2E-43 256.8 25.1 285 85-410 40-337 (338)
18 KOG0296 Angio-associated migra 100.0 3.3E-38 7.1E-43 260.0 27.5 318 49-411 58-398 (399)
19 KOG0273 Beta-transducin family 100.0 2E-38 4.3E-43 269.4 26.7 290 83-417 169-488 (524)
20 KOG0273 Beta-transducin family 100.0 8.7E-38 1.9E-42 265.6 28.0 315 49-411 173-523 (524)
21 KOG0279 G protein beta subunit 100.0 7.1E-38 1.5E-42 249.2 25.0 279 50-357 10-313 (315)
22 KOG0293 WD40 repeat-containing 100.0 1.8E-38 3.9E-43 265.5 22.1 288 82-413 214-515 (519)
23 KOG0282 mRNA splicing factor [ 100.0 1.7E-39 3.8E-44 276.8 16.3 288 82-409 204-503 (503)
24 KOG0316 Conserved WD40 repeat- 100.0 2.4E-37 5.3E-42 240.3 25.9 279 84-410 9-298 (307)
25 KOG0281 Beta-TrCP (transducin 100.0 2.8E-39 6.2E-44 264.7 14.3 266 64-359 204-479 (499)
26 cd00200 WD40 WD40 domain, foun 100.0 5.5E-36 1.2E-40 264.4 35.0 280 86-409 3-289 (289)
27 KOG0263 Transcription initiati 100.0 4.8E-38 1E-42 283.6 21.6 282 82-416 368-654 (707)
28 KOG0291 WD40-repeat-containing 100.0 1.1E-35 2.3E-40 266.5 36.1 339 55-414 96-511 (893)
29 KOG0266 WD40 repeat-containing 100.0 1.5E-36 3.3E-41 280.9 31.3 291 79-411 145-454 (456)
30 KOG0319 WD40-repeat-containing 100.0 7E-37 1.5E-41 273.5 24.9 292 80-412 311-620 (775)
31 KOG0313 Microtubule binding pr 100.0 3E-36 6.5E-41 249.6 24.4 283 90-411 103-418 (423)
32 KOG0284 Polyadenylation factor 100.0 9.1E-38 2E-42 260.9 15.2 271 55-357 96-380 (464)
33 KOG0318 WD40 repeat stress pro 100.0 9.5E-35 2.1E-39 250.4 32.4 349 35-415 39-521 (603)
34 KOG0291 WD40-repeat-containing 100.0 7.6E-35 1.7E-39 261.1 32.0 325 48-416 182-555 (893)
35 KOG0265 U5 snRNP-specific prot 100.0 2.1E-35 4.5E-40 237.5 24.2 279 47-354 39-335 (338)
36 PLN00181 protein SPA1-RELATED; 100.0 1.9E-34 4.1E-39 286.7 36.4 284 88-410 479-792 (793)
37 KOG0295 WD40 repeat-containing 100.0 1E-35 2.3E-40 245.1 22.4 281 103-431 77-380 (406)
38 KOG0274 Cdc4 and related F-box 100.0 1.8E-34 3.8E-39 265.9 30.1 280 91-419 207-490 (537)
39 KOG0292 Vesicle coat complex C 100.0 6.7E-35 1.5E-39 265.6 26.8 291 88-415 5-325 (1202)
40 KOG0263 Transcription initiati 100.0 6.8E-35 1.5E-39 263.3 24.6 202 85-314 444-650 (707)
41 KOG0276 Vesicle coat complex C 100.0 1.1E-34 2.3E-39 255.0 24.7 277 86-406 7-294 (794)
42 KOG0643 Translation initiation 100.0 1.5E-34 3.1E-39 228.9 21.6 284 87-412 5-318 (327)
43 KOG0296 Angio-associated migra 100.0 1E-33 2.2E-38 233.6 27.1 295 82-418 54-363 (399)
44 KOG0645 WD40 repeat protein [G 100.0 6.7E-33 1.4E-37 220.0 29.7 250 123-412 5-262 (312)
45 KOG0278 Serine/threonine kinas 100.0 7.7E-35 1.7E-39 228.4 18.2 282 87-416 9-302 (334)
46 KOG0285 Pleiotropic regulator 100.0 1.9E-34 4.2E-39 237.2 21.4 249 122-416 141-394 (460)
47 KOG0306 WD40-repeat-containing 100.0 2.3E-33 4.9E-38 251.6 29.3 350 46-417 98-586 (888)
48 KOG0276 Vesicle coat complex C 100.0 2.6E-34 5.7E-39 252.5 21.8 245 127-414 8-260 (794)
49 KOG0306 WD40-repeat-containing 100.0 9.1E-33 2E-37 247.7 29.2 281 87-413 368-666 (888)
50 KOG0277 Peroxisomal targeting 100.0 6.5E-33 1.4E-37 218.1 21.0 260 111-410 37-308 (311)
51 KOG0275 Conserved WD40 repeat- 100.0 5.8E-34 1.3E-38 231.7 15.5 284 89-409 210-507 (508)
52 KOG0316 Conserved WD40 repeat- 100.0 1.3E-32 2.8E-37 214.0 21.1 249 124-416 9-262 (307)
53 KOG0266 WD40 repeat-containing 100.0 2.4E-32 5.1E-37 253.0 27.0 271 55-357 159-454 (456)
54 KOG0268 Sof1-like rRNA process 100.0 1.3E-33 2.8E-38 232.7 15.8 285 85-416 59-350 (433)
55 KOG1446 Histone H3 (Lys4) meth 100.0 6.1E-31 1.3E-35 213.8 31.1 293 82-413 4-305 (311)
56 KOG0292 Vesicle coat complex C 100.0 7.3E-33 1.6E-37 252.5 21.4 252 128-417 5-286 (1202)
57 PLN00181 protein SPA1-RELATED; 100.0 1.6E-31 3.4E-36 265.9 32.6 283 51-356 479-792 (793)
58 KOG1407 WD40 repeat protein [F 100.0 1.1E-31 2.4E-36 212.0 24.7 279 86-411 14-311 (313)
59 KOG0283 WD40 repeat-containing 100.0 3.9E-32 8.5E-37 247.6 25.3 253 82-358 256-577 (712)
60 KOG0289 mRNA splicing factor [ 100.0 1.2E-31 2.6E-36 226.1 25.9 277 93-410 220-505 (506)
61 KOG0300 WD40 repeat-containing 100.0 7.2E-32 1.6E-36 219.0 23.0 317 81-414 137-479 (481)
62 KOG0274 Cdc4 and related F-box 100.0 4.7E-32 1E-36 250.0 24.4 267 67-371 218-493 (537)
63 KOG0313 Microtubule binding pr 100.0 1E-31 2.2E-36 222.9 23.6 294 53-357 103-418 (423)
64 KOG0294 WD40 repeat-containing 100.0 7.9E-31 1.7E-35 212.6 26.9 266 104-414 3-284 (362)
65 cd00200 WD40 WD40 domain, foun 100.0 7.2E-31 1.6E-35 231.7 28.9 275 49-355 3-289 (289)
66 KOG0282 mRNA splicing factor [ 100.0 7.9E-33 1.7E-37 236.3 15.2 257 122-417 204-468 (503)
67 KOG0640 mRNA cleavage stimulat 100.0 1.1E-31 2.4E-36 217.1 20.4 288 87-411 107-426 (430)
68 KOG0277 Peroxisomal targeting 100.0 7.4E-32 1.6E-36 212.2 18.2 236 91-356 59-308 (311)
69 KOG0293 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 225.0 18.7 282 44-358 213-514 (519)
70 KOG0288 WD40 repeat protein Ti 100.0 3E-32 6.5E-37 228.3 15.1 283 84-409 167-459 (459)
71 KOG0283 WD40 repeat-containing 100.0 8.8E-31 1.9E-35 238.8 24.5 270 123-414 257-579 (712)
72 KOG0305 Anaphase promoting com 100.0 2.8E-30 6E-35 229.5 26.2 270 98-414 183-464 (484)
73 KOG0301 Phospholipase A2-activ 100.0 3.6E-30 7.9E-35 229.2 26.4 280 81-414 3-291 (745)
74 KOG0641 WD40 repeat protein [G 100.0 2.5E-28 5.4E-33 189.3 32.7 305 74-411 15-349 (350)
75 KOG0643 Translation initiation 100.0 1.6E-29 3.4E-34 200.5 25.0 286 50-358 5-318 (327)
76 KOG0294 WD40 repeat-containing 100.0 9.8E-30 2.1E-34 206.3 24.1 267 79-382 30-307 (362)
77 KOG0973 Histone transcription 100.0 3.9E-30 8.4E-35 240.6 24.9 297 91-413 12-357 (942)
78 PTZ00421 coronin; Provisional 100.0 7.9E-29 1.7E-33 228.5 33.2 260 98-384 28-315 (493)
79 KOG0772 Uncharacterized conser 100.0 2.5E-29 5.5E-34 216.6 27.7 303 82-409 157-485 (641)
80 KOG0278 Serine/threonine kinas 100.0 6.8E-31 1.5E-35 206.3 15.1 278 50-360 9-300 (334)
81 KOG0310 Conserved WD40 repeat- 100.0 4E-29 8.6E-34 214.1 25.7 276 92-414 26-312 (487)
82 PTZ00420 coronin; Provisional 100.0 3.1E-28 6.8E-33 225.4 33.3 252 108-384 50-318 (568)
83 KOG4283 Transcription-coupled 100.0 3.3E-29 7.1E-34 201.5 22.8 286 89-410 40-364 (397)
84 KOG0310 Conserved WD40 repeat- 100.0 1.2E-29 2.5E-34 217.4 20.6 290 24-359 11-311 (487)
85 KOG0275 Conserved WD40 repeat- 100.0 1.7E-30 3.7E-35 211.6 14.6 272 51-355 209-507 (508)
86 KOG2096 WD40 repeat protein [G 100.0 1.1E-28 2.3E-33 200.6 24.1 303 85-411 79-402 (420)
87 KOG0308 Conserved WD40 repeat- 100.0 4.3E-30 9.3E-35 227.2 17.2 271 101-413 36-329 (735)
88 KOG0288 WD40 repeat protein Ti 100.0 3E-30 6.5E-35 216.4 14.9 284 42-355 162-459 (459)
89 KOG0264 Nucleosome remodeling 100.0 2.1E-29 4.5E-34 214.2 19.8 251 88-358 120-405 (422)
90 KOG0299 U3 snoRNP-associated p 100.0 4.6E-29 1E-33 212.2 21.1 262 125-415 135-414 (479)
91 PTZ00421 coronin; Provisional 100.0 6.2E-28 1.3E-32 222.6 29.9 242 87-358 70-332 (493)
92 PTZ00420 coronin; Provisional 100.0 1E-27 2.2E-32 222.1 31.4 246 84-358 66-335 (568)
93 KOG1036 Mitotic spindle checkp 100.0 4E-28 8.6E-33 196.6 24.7 269 91-401 12-294 (323)
94 KOG0650 WD40 repeat nucleolar 100.0 1.2E-28 2.7E-33 216.0 22.9 314 75-408 381-732 (733)
95 KOG1332 Vesicle coat complex C 100.0 8.7E-29 1.9E-33 193.9 19.6 251 129-412 8-287 (299)
96 KOG1408 WD40 repeat protein [F 100.0 1.1E-28 2.4E-33 220.6 22.8 299 96-412 328-714 (1080)
97 KOG0647 mRNA export protein (c 100.0 3.2E-28 7E-33 196.4 23.1 266 91-399 26-311 (347)
98 KOG0300 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 200.3 19.8 288 44-359 137-478 (481)
99 KOG0299 U3 snoRNP-associated p 100.0 1.4E-27 3.1E-32 203.1 26.2 288 85-412 135-457 (479)
100 KOG0289 mRNA splicing factor [ 100.0 5.7E-28 1.2E-32 204.0 23.4 262 68-356 232-505 (506)
101 KOG0639 Transducin-like enhanc 100.0 3.5E-28 7.6E-33 209.0 21.3 277 88-410 415-703 (705)
102 KOG0308 Conserved WD40 repeat- 100.0 6.8E-29 1.5E-33 219.6 16.7 328 65-415 35-397 (735)
103 KOG0305 Anaphase promoting com 100.0 9.8E-28 2.1E-32 213.4 24.1 237 91-359 216-463 (484)
104 KOG1446 Histone H3 (Lys4) meth 100.0 2.1E-26 4.6E-31 187.5 29.4 255 123-419 5-270 (311)
105 KOG0301 Phospholipase A2-activ 100.0 4.5E-28 9.7E-33 216.0 20.9 273 46-359 5-290 (745)
106 KOG0646 WD40 repeat protein [G 100.0 1.7E-27 3.6E-32 203.2 22.9 278 106-419 11-315 (476)
107 KOG1332 Vesicle coat complex C 100.0 3.1E-28 6.6E-33 190.8 16.1 241 50-312 6-285 (299)
108 KOG0647 mRNA export protein (c 100.0 6E-27 1.3E-31 189.1 24.0 247 130-418 25-288 (347)
109 KOG0264 Nucleosome remodeling 100.0 1.4E-27 3E-32 203.1 21.3 256 130-412 122-405 (422)
110 KOG0321 WD40 repeat-containing 100.0 1.2E-27 2.5E-32 211.4 21.2 282 101-414 63-394 (720)
111 KOG2445 Nuclear pore complex c 100.0 1.3E-26 2.9E-31 187.6 25.3 255 129-411 10-318 (361)
112 KOG1539 WD repeat protein [Gen 100.0 4E-26 8.7E-31 207.6 31.0 311 76-417 186-612 (910)
113 KOG2106 Uncharacterized conser 100.0 9.2E-26 2E-30 194.3 30.4 300 86-410 239-625 (626)
114 KOG0646 WD40 repeat protein [G 100.0 6.8E-27 1.5E-31 199.4 20.5 251 101-383 49-330 (476)
115 KOG0772 Uncharacterized conser 100.0 5.4E-27 1.2E-31 202.3 20.0 261 123-415 158-449 (641)
116 KOG1036 Mitotic spindle checkp 100.0 7.7E-26 1.7E-30 183.4 25.1 247 131-422 12-273 (323)
117 KOG0640 mRNA cleavage stimulat 100.0 6.5E-27 1.4E-31 189.6 18.0 291 39-357 95-426 (430)
118 KOG1407 WD40 repeat protein [F 100.0 3.3E-26 7.2E-31 181.1 21.5 265 49-348 14-293 (313)
119 KOG2445 Nuclear pore complex c 100.0 1E-25 2.2E-30 182.5 24.7 265 89-370 10-331 (361)
120 KOG0641 WD40 repeat protein [G 100.0 4.9E-25 1.1E-29 171.1 26.4 241 88-357 85-349 (350)
121 KOG1063 RNA polymerase II elon 100.0 5.9E-26 1.3E-30 202.5 24.3 320 81-413 180-650 (764)
122 KOG0268 Sof1-like rRNA process 99.9 8.7E-27 1.9E-31 192.7 16.9 278 47-359 58-347 (433)
123 KOG1274 WD40 repeat protein [G 99.9 2.7E-25 5.9E-30 204.5 27.3 263 90-383 11-281 (933)
124 KOG2106 Uncharacterized conser 99.9 1.9E-24 4E-29 186.3 30.6 339 47-425 96-491 (626)
125 KOG2048 WD40 repeat protein [G 99.9 6.2E-25 1.3E-29 195.7 28.5 276 56-357 26-319 (691)
126 KOG1539 WD repeat protein [Gen 99.9 1.3E-24 2.8E-29 197.9 29.0 342 46-411 193-648 (910)
127 KOG0973 Histone transcription 99.9 2.5E-25 5.5E-30 208.6 24.6 272 57-359 15-357 (942)
128 KOG0269 WD40 repeat-containing 99.9 9.8E-27 2.1E-31 210.0 14.2 234 96-359 91-342 (839)
129 KOG2048 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 187.7 33.3 283 91-413 24-321 (691)
130 KOG1408 WD40 repeat protein [F 99.9 7E-25 1.5E-29 196.5 25.5 296 94-430 262-686 (1080)
131 KOG0269 WD40 repeat-containing 99.9 4.4E-26 9.5E-31 205.8 17.7 283 95-415 42-344 (839)
132 KOG4328 WD40 protein [Function 99.9 1.5E-24 3.2E-29 184.8 24.7 298 80-411 174-495 (498)
133 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-23 7.1E-28 184.5 32.9 271 102-417 1-285 (300)
134 KOG0267 Microtubule severing p 99.9 1.7E-26 3.7E-31 206.9 11.0 249 105-403 7-260 (825)
135 KOG2055 WD40 repeat protein [G 99.9 5.9E-24 1.3E-28 181.3 23.7 281 92-411 213-512 (514)
136 KOG0270 WD40 repeat-containing 99.9 7.5E-25 1.6E-29 185.9 17.8 254 143-416 193-454 (463)
137 KOG1445 Tumor-specific antigen 99.9 1.9E-24 4.1E-29 191.3 19.6 119 285-415 629-754 (1012)
138 KOG0267 Microtubule severing p 99.9 1.1E-25 2.4E-30 201.8 10.1 227 51-305 24-260 (825)
139 KOG0270 WD40 repeat-containing 99.9 3.6E-24 7.8E-29 181.8 18.4 235 96-359 177-451 (463)
140 KOG1063 RNA polymerase II elon 99.9 8.9E-23 1.9E-27 182.4 27.6 359 50-411 262-763 (764)
141 KOG1188 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 173.2 19.5 278 103-412 41-347 (376)
142 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.5E-27 165.5 24.7 278 95-415 26-326 (405)
143 KOG1034 Transcriptional repres 99.9 6E-23 1.3E-27 168.0 22.9 299 79-411 24-383 (385)
144 KOG0321 WD40 repeat-containing 99.9 1.2E-23 2.7E-28 186.2 20.0 288 65-359 62-393 (720)
145 KOG0639 Transducin-like enhanc 99.9 1E-23 2.2E-28 181.7 18.1 248 130-419 417-671 (705)
146 KOG0302 Ribosome Assembly prot 99.9 2.7E-23 5.9E-28 172.9 19.6 241 88-351 147-433 (440)
147 KOG0302 Ribosome Assembly prot 99.9 1.3E-23 2.8E-28 174.9 17.4 210 192-414 149-381 (440)
148 KOG0322 G-protein beta subunit 99.9 5.7E-24 1.2E-28 168.8 13.6 290 84-410 6-322 (323)
149 KOG4283 Transcription-coupled 99.9 8.9E-23 1.9E-27 164.6 18.1 234 129-417 40-282 (397)
150 KOG1274 WD40 repeat protein [G 99.9 2.3E-21 5E-26 178.9 26.0 242 129-412 10-263 (933)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-20 5E-25 166.1 31.0 264 82-382 21-300 (300)
152 KOG1034 Transcriptional repres 99.9 1.2E-21 2.6E-26 160.5 19.8 260 129-415 35-341 (385)
153 KOG2919 Guanine nucleotide-bin 99.9 2.2E-21 4.8E-26 158.6 21.2 267 95-402 52-361 (406)
154 KOG4378 Nuclear protein COP1 [ 99.9 6.5E-22 1.4E-26 170.4 18.7 256 94-383 36-304 (673)
155 KOG4227 WD40 repeat protein [G 99.9 1.9E-21 4.1E-26 163.0 20.1 298 85-411 49-387 (609)
156 KOG2055 WD40 repeat protein [G 99.9 3.8E-21 8.2E-26 164.3 21.8 282 52-357 210-512 (514)
157 KOG0649 WD40 repeat protein [G 99.9 3.3E-20 7.1E-25 145.9 24.8 278 101-409 21-314 (325)
158 KOG1007 WD repeat protein TSSC 99.9 2.9E-21 6.3E-26 155.5 18.5 248 87-358 58-362 (370)
159 KOG4378 Nuclear protein COP1 [ 99.9 3.3E-21 7.2E-26 166.1 19.5 266 108-415 8-284 (673)
160 KOG1009 Chromatin assembly com 99.9 1.8E-20 3.9E-25 157.8 23.1 302 92-414 13-375 (434)
161 KOG0307 Vesicle coat complex C 99.9 5.3E-22 1.2E-26 187.4 14.8 266 109-414 36-330 (1049)
162 KOG1538 Uncharacterized conser 99.9 9.3E-21 2E-25 169.1 21.4 270 94-413 14-295 (1081)
163 KOG2096 WD40 repeat protein [G 99.9 7.7E-21 1.7E-25 155.2 18.6 211 189-412 81-309 (420)
164 KOG1334 WD40 repeat protein [G 99.9 9.8E-22 2.1E-26 169.1 12.8 306 79-415 129-470 (559)
165 KOG1517 Guanine nucleotide bin 99.9 4.4E-20 9.5E-25 172.8 24.6 287 102-414 1076-1384(1387)
166 KOG0290 Conserved WD40 repeat- 99.9 7E-20 1.5E-24 147.8 22.4 285 94-407 46-361 (364)
167 KOG0303 Actin-binding protein 99.9 4.9E-21 1.1E-25 160.6 16.1 246 86-359 75-339 (472)
168 KOG4328 WD40 protein [Function 99.9 1.6E-20 3.6E-25 160.3 18.7 268 117-418 171-457 (498)
169 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-20 2.3E-25 165.6 15.9 272 79-373 281-574 (577)
170 COG2319 FOG: WD40 repeat [Gene 99.9 4.6E-18 1E-22 159.1 35.0 284 87-414 60-362 (466)
171 KOG1310 WD40 repeat protein [G 99.9 3.8E-20 8.3E-25 161.6 18.9 222 79-312 37-302 (758)
172 KOG0307 Vesicle coat complex C 99.9 2.9E-21 6.2E-26 182.5 12.1 239 93-360 65-330 (1049)
173 KOG1587 Cytoplasmic dynein int 99.9 3.7E-19 8.1E-24 163.5 24.7 274 111-413 221-518 (555)
174 KOG1273 WD40 repeat protein [G 99.8 1.4E-19 2.9E-24 147.7 18.4 241 135-415 26-284 (405)
175 KOG1007 WD repeat protein TSSC 99.8 2.9E-19 6.3E-24 144.1 20.1 274 110-412 38-362 (370)
176 KOG1523 Actin-related protein 99.8 1.4E-18 2.9E-23 142.3 22.8 238 88-348 6-269 (361)
177 KOG0650 WD40 repeat nucleolar 99.8 2E-19 4.3E-24 158.7 19.0 290 35-354 380-732 (733)
178 KOG0644 Uncharacterized conser 99.8 9.7E-21 2.1E-25 172.9 10.2 288 73-415 170-472 (1113)
179 PRK11028 6-phosphogluconolacto 99.8 1.8E-17 3.9E-22 149.0 30.5 272 106-412 6-305 (330)
180 KOG2919 Guanine nucleotide-bin 99.8 8.3E-19 1.8E-23 143.7 19.2 267 58-347 52-360 (406)
181 KOG1240 Protein kinase contain 99.8 4E-18 8.7E-23 162.2 26.0 304 77-409 1033-1431(1431)
182 KOG0642 Cell-cycle nuclear pro 99.8 1.6E-19 3.5E-24 158.3 15.2 260 126-416 288-566 (577)
183 KOG0303 Actin-binding protein 99.8 1.8E-18 3.9E-23 145.3 20.4 207 190-417 77-300 (472)
184 KOG2110 Uncharacterized conser 99.8 1.9E-17 4.2E-22 138.2 25.4 227 62-316 12-251 (391)
185 KOG0290 Conserved WD40 repeat- 99.8 5E-18 1.1E-22 137.2 20.8 258 122-415 35-322 (364)
186 COG2319 FOG: WD40 repeat [Gene 99.8 3E-16 6.6E-21 146.8 36.2 294 76-412 133-443 (466)
187 KOG1538 Uncharacterized conser 99.8 1.1E-18 2.3E-23 156.1 17.9 261 57-357 14-293 (1081)
188 KOG1445 Tumor-specific antigen 99.8 8.8E-19 1.9E-23 155.8 17.0 251 148-431 599-867 (1012)
189 KOG1963 WD40 repeat protein [G 99.8 1.8E-16 3.9E-21 146.5 28.8 253 53-314 14-323 (792)
190 KOG1587 Cytoplasmic dynein int 99.8 1.8E-17 3.9E-22 152.5 21.1 231 151-414 221-475 (555)
191 KOG1188 WD40 repeat protein [G 99.8 6.4E-18 1.4E-22 139.5 16.2 195 207-415 41-246 (376)
192 KOG0644 Uncharacterized conser 99.8 9.2E-20 2E-24 166.6 5.9 247 123-417 181-432 (1113)
193 KOG1524 WD40 repeat-containing 99.8 1.6E-17 3.5E-22 145.0 19.3 259 90-408 12-283 (737)
194 KOG0322 G-protein beta subunit 99.8 9.4E-18 2E-22 133.8 16.3 295 45-356 4-322 (323)
195 KOG0649 WD40 repeat protein [G 99.8 2.1E-16 4.5E-21 124.8 21.8 240 135-411 13-274 (325)
196 KOG0771 Prolactin regulatory e 99.8 1E-16 2.2E-21 136.3 20.9 201 198-415 148-358 (398)
197 KOG1517 Guanine nucleotide bin 99.8 8.8E-17 1.9E-21 151.1 21.2 245 92-359 1109-1383(1387)
198 KOG4227 WD40 repeat protein [G 99.8 8.4E-17 1.8E-21 135.4 18.8 254 127-413 51-324 (609)
199 KOG1272 WD40-repeat-containing 99.8 3.5E-18 7.7E-23 146.5 10.1 268 95-407 132-405 (545)
200 KOG1963 WD40 repeat protein [G 99.8 1.5E-15 3.3E-20 140.5 28.0 289 90-413 203-540 (792)
201 KOG1009 Chromatin assembly com 99.7 1.5E-16 3.3E-21 134.4 18.5 271 58-359 16-374 (434)
202 KOG2110 Uncharacterized conser 99.7 4.2E-15 9.1E-20 124.4 25.4 232 92-358 5-249 (391)
203 KOG1523 Actin-related protein 99.7 3.5E-16 7.5E-21 128.4 18.3 210 193-414 9-239 (361)
204 KOG2139 WD40 repeat protein [G 99.7 9.2E-15 2E-19 122.1 25.7 293 94-411 100-431 (445)
205 KOG1310 WD40 repeat protein [G 99.7 9.1E-17 2E-21 140.8 14.1 169 124-313 42-231 (758)
206 KOG0771 Prolactin regulatory e 99.7 2.5E-16 5.4E-21 134.0 15.1 193 96-314 148-355 (398)
207 KOG1240 Protein kinase contain 99.7 3E-15 6.5E-20 143.0 23.8 273 117-416 1034-1339(1431)
208 PRK11028 6-phosphogluconolacto 99.7 6.4E-14 1.4E-18 126.0 31.3 250 84-358 27-305 (330)
209 KOG2394 WD40 protein DMR-N9 [G 99.7 8.3E-15 1.8E-19 128.4 23.3 168 144-339 187-384 (636)
210 KOG3881 Uncharacterized conser 99.7 2.9E-15 6.3E-20 126.3 19.3 260 91-383 54-342 (412)
211 PRK01742 tolB translocation pr 99.7 4E-15 8.7E-20 138.0 21.5 234 111-383 183-426 (429)
212 KOG2321 WD40 repeat protein [G 99.7 3.1E-14 6.7E-19 125.8 24.2 283 90-414 49-346 (703)
213 KOG1334 WD40 repeat protein [G 99.7 1.2E-15 2.5E-20 132.1 14.6 277 123-431 133-450 (559)
214 KOG1524 WD40 repeat-containing 99.7 1.7E-15 3.7E-20 132.6 15.5 203 102-353 75-282 (737)
215 KOG2394 WD40 protein DMR-N9 [G 99.6 6.2E-15 1.4E-19 129.1 15.9 185 102-293 185-384 (636)
216 KOG1354 Serine/threonine prote 99.6 4.7E-14 1E-18 117.1 18.7 263 91-359 24-361 (433)
217 KOG2111 Uncharacterized conser 99.6 2.5E-12 5.3E-17 106.0 28.3 232 95-359 8-258 (346)
218 PF02239 Cytochrom_D1: Cytochr 99.6 9.2E-13 2E-17 118.3 28.3 273 103-416 6-307 (369)
219 KOG1409 Uncharacterized conser 99.6 4.7E-14 1E-18 117.1 18.2 330 44-412 13-395 (404)
220 PRK01742 tolB translocation pr 99.6 6.6E-14 1.4E-18 129.9 19.9 211 151-411 183-401 (429)
221 KOG2111 Uncharacterized conser 99.6 1.7E-12 3.8E-17 106.9 25.5 177 112-316 75-259 (346)
222 KOG1272 WD40-repeat-containing 99.6 2.4E-15 5.3E-20 129.3 8.7 226 133-409 130-360 (545)
223 KOG0974 WD-repeat protein WDR6 99.6 1E-13 2.3E-18 130.8 19.4 275 91-414 6-291 (967)
224 KOG3881 Uncharacterized conser 99.6 6.7E-13 1.4E-17 112.2 19.8 213 83-314 96-321 (412)
225 PRK03629 tolB translocation pr 99.6 2.7E-12 5.9E-17 118.8 24.8 232 113-382 180-427 (429)
226 KOG4497 Uncharacterized conser 99.5 3.1E-12 6.8E-17 105.9 21.7 273 97-414 15-394 (447)
227 TIGR03300 assembly_YfgL outer 99.5 4.8E-11 1E-15 109.5 31.5 271 99-416 62-343 (377)
228 PRK04922 tolB translocation pr 99.5 8.1E-12 1.8E-16 116.3 23.6 231 112-382 184-432 (433)
229 KOG2139 WD40 repeat protein [G 99.5 1.2E-11 2.6E-16 103.7 21.7 264 67-357 110-431 (445)
230 PF10282 Lactonase: Lactonase, 99.5 8.9E-10 1.9E-14 99.3 35.7 276 105-411 2-322 (345)
231 KOG4497 Uncharacterized conser 99.5 3.1E-11 6.8E-16 100.1 23.6 316 60-405 13-426 (447)
232 PRK02889 tolB translocation pr 99.5 8E-12 1.7E-16 115.9 22.9 234 112-383 176-425 (427)
233 TIGR03300 assembly_YfgL outer 99.5 6.5E-11 1.4E-15 108.6 28.7 264 98-408 101-376 (377)
234 KOG0974 WD-repeat protein WDR6 99.5 2.9E-12 6.3E-17 121.3 17.6 184 101-314 98-289 (967)
235 KOG4547 WD40 repeat-containing 99.5 3.5E-11 7.6E-16 107.4 22.8 186 102-315 5-222 (541)
236 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-09 2.7E-14 98.3 32.9 304 81-419 25-355 (369)
237 KOG0280 Uncharacterized conser 99.5 5.2E-11 1.1E-15 97.3 21.3 271 111-414 45-336 (339)
238 PRK05137 tolB translocation pr 99.4 6.8E-11 1.5E-15 110.2 25.1 230 112-382 182-432 (435)
239 KOG1064 RAVE (regulator of V-A 99.4 1.3E-12 2.9E-17 129.6 13.0 187 133-359 2209-2400(2439)
240 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.6E-09 7.8E-14 93.1 32.7 273 112-418 27-337 (352)
241 PRK03629 tolB translocation pr 99.4 2.2E-10 4.7E-15 106.3 26.0 195 193-412 197-407 (429)
242 PF08662 eIF2A: Eukaryotic tra 99.4 3.4E-11 7.3E-16 98.3 18.1 107 132-265 59-179 (194)
243 KOG1409 Uncharacterized conser 99.4 2.1E-11 4.6E-16 101.6 16.7 250 123-415 15-274 (404)
244 PRK02889 tolB translocation pr 99.4 6.8E-11 1.5E-15 109.7 22.2 198 192-410 193-402 (427)
245 PRK04922 tolB translocation pr 99.4 8.7E-11 1.9E-15 109.4 22.0 196 192-412 201-412 (433)
246 PF08662 eIF2A: Eukaryotic tra 99.4 7E-11 1.5E-15 96.5 17.9 146 198-358 9-180 (194)
247 PRK05137 tolB translocation pr 99.4 2.8E-10 6E-15 106.2 24.1 196 192-414 199-415 (435)
248 KOG4190 Uncharacterized conser 99.4 3E-12 6.5E-17 113.2 9.6 285 85-407 728-1032(1034)
249 PF10282 Lactonase: Lactonase, 99.4 6.1E-08 1.3E-12 87.5 37.6 254 93-357 37-322 (345)
250 KOG1354 Serine/threonine prote 99.3 2.1E-10 4.5E-15 95.9 17.0 273 132-415 25-363 (433)
251 KOG2321 WD40 repeat protein [G 99.3 4.5E-10 9.7E-15 100.1 19.5 246 131-417 50-308 (703)
252 KOG2041 WD40 repeat protein [G 99.3 9.2E-10 2E-14 100.7 21.9 281 91-411 13-337 (1189)
253 KOG4547 WD40 repeat-containing 99.3 6.9E-10 1.5E-14 99.3 20.8 201 144-359 7-222 (541)
254 TIGR02800 propeller_TolB tol-p 99.3 1.3E-09 2.8E-14 101.8 23.9 210 112-357 170-397 (417)
255 PF04762 IKI3: IKI3 family; I 99.3 1.2E-08 2.7E-13 101.9 31.7 303 91-413 74-458 (928)
256 KOG0280 Uncharacterized conser 99.3 4.7E-10 1E-14 91.8 17.4 189 215-414 45-244 (339)
257 COG5170 CDC55 Serine/threonine 99.3 1.9E-10 4.2E-15 94.8 14.1 263 91-358 25-368 (460)
258 PRK00178 tolB translocation pr 99.3 4.1E-09 8.9E-14 98.5 25.0 230 113-382 180-427 (430)
259 KOG1912 WD40 repeat protein [G 99.2 1.9E-09 4.2E-14 99.5 21.2 322 79-414 42-554 (1062)
260 KOG2315 Predicted translation 99.2 4.5E-09 9.7E-14 93.6 22.8 269 94-413 75-392 (566)
261 PRK04792 tolB translocation pr 99.2 4.6E-09 1E-13 97.9 24.3 230 113-382 199-446 (448)
262 COG2706 3-carboxymuconate cycl 99.2 1E-07 2.2E-12 81.0 29.6 273 111-414 15-324 (346)
263 KOG4714 Nucleoporin [Nuclear s 99.2 2.3E-10 4.9E-15 92.0 13.0 235 95-355 39-316 (319)
264 KOG1064 RAVE (regulator of V-A 99.2 4.6E-11 9.9E-16 119.2 10.5 190 193-416 2207-2403(2439)
265 TIGR02800 propeller_TolB tol-p 99.2 5.6E-09 1.2E-13 97.5 23.5 193 192-411 187-397 (417)
266 COG2706 3-carboxymuconate cycl 99.2 2.6E-07 5.6E-12 78.6 30.2 257 91-359 38-323 (346)
267 KOG0309 Conserved WD40 repeat- 99.2 1.9E-10 4.2E-15 105.3 11.6 292 92-413 24-341 (1081)
268 COG4946 Uncharacterized protei 99.2 5.6E-08 1.2E-12 85.1 26.0 169 101-302 331-507 (668)
269 PRK11138 outer membrane biogen 99.2 4E-08 8.7E-13 90.6 26.9 270 100-416 67-358 (394)
270 PRK11138 outer membrane biogen 99.2 3.8E-08 8.2E-13 90.8 26.6 266 99-410 117-393 (394)
271 KOG4532 WD40-like repeat conta 99.2 2E-08 4.4E-13 81.4 21.3 239 144-416 86-336 (344)
272 PRK00178 tolB translocation pr 99.2 2.8E-08 6E-13 93.0 25.8 196 192-412 196-407 (430)
273 KOG4190 Uncharacterized conser 99.2 2.2E-10 4.9E-15 101.6 10.2 277 50-353 730-1032(1034)
274 KOG1912 WD40 repeat protein [G 99.1 4.8E-09 1E-13 96.9 18.7 286 95-415 18-368 (1062)
275 PF13360 PQQ_2: PQQ-like domai 99.1 3.6E-08 7.8E-13 84.4 23.2 227 151-416 2-235 (238)
276 PRK01029 tolB translocation pr 99.1 8.8E-08 1.9E-12 88.7 26.0 236 112-383 165-425 (428)
277 KOG0309 Conserved WD40 repeat- 99.1 5.8E-10 1.3E-14 102.3 10.1 229 104-358 83-340 (1081)
278 PF04762 IKI3: IKI3 family; I 99.1 4.1E-07 8.8E-12 91.3 30.3 243 131-410 74-378 (928)
279 KOG4532 WD40-like repeat conta 99.1 3.7E-08 8.1E-13 79.9 18.0 192 101-317 83-286 (344)
280 PRK04792 tolB translocation pr 99.1 1.1E-07 2.3E-12 88.9 23.7 195 192-411 215-425 (448)
281 PRK01029 tolB translocation pr 99.0 1.4E-07 3.1E-12 87.3 23.5 203 193-415 183-407 (428)
282 PLN02919 haloacid dehalogenase 99.0 6.7E-07 1.5E-11 91.5 30.3 209 194-415 623-892 (1057)
283 KOG2041 WD40 repeat protein [G 99.0 6E-09 1.3E-13 95.5 13.6 245 132-403 14-280 (1189)
284 PF15492 Nbas_N: Neuroblastoma 99.0 2.7E-06 5.9E-11 70.3 27.3 195 195-416 44-264 (282)
285 PLN02919 haloacid dehalogenase 99.0 1.3E-06 2.8E-11 89.5 30.9 249 101-360 579-891 (1057)
286 KOG2315 Predicted translation 99.0 1.1E-07 2.4E-12 85.0 20.1 249 96-383 129-411 (566)
287 KOG4714 Nucleoporin [Nuclear s 99.0 2.7E-09 5.8E-14 86.0 8.7 196 197-412 39-255 (319)
288 PF13360 PQQ_2: PQQ-like domai 99.0 1.2E-06 2.5E-11 75.0 26.0 212 110-359 1-232 (238)
289 KOG4649 PQQ (pyrrolo-quinoline 99.0 3.5E-06 7.6E-11 68.6 26.1 122 101-246 22-145 (354)
290 KOG3914 WD repeat protein WDR4 99.0 1.3E-08 2.8E-13 87.1 12.7 154 196-360 64-226 (390)
291 COG5354 Uncharacterized protei 99.0 1.3E-06 2.9E-11 77.4 24.9 311 55-414 32-398 (561)
292 KOG2695 WD40 repeat protein [G 98.9 4E-09 8.6E-14 88.4 7.8 153 210-370 228-386 (425)
293 KOG2314 Translation initiation 98.9 1.1E-06 2.5E-11 78.6 23.4 272 97-412 215-526 (698)
294 PF08450 SGL: SMP-30/Gluconola 98.9 1.2E-05 2.6E-10 69.0 29.3 213 97-338 4-233 (246)
295 KOG2314 Translation initiation 98.9 5.3E-07 1.1E-11 80.7 20.4 276 95-411 252-573 (698)
296 KOG2695 WD40 repeat protein [G 98.9 6.3E-09 1.4E-13 87.2 7.9 157 249-420 226-385 (425)
297 KOG3914 WD repeat protein WDR4 98.9 5.4E-08 1.2E-12 83.5 13.6 158 241-416 67-228 (390)
298 KOG1275 PAB-dependent poly(A) 98.8 9.9E-08 2.1E-12 90.1 14.8 184 101-311 146-340 (1118)
299 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.1E-05 2.4E-10 71.4 26.5 212 98-317 53-334 (352)
300 KOG0882 Cyclophilin-related pe 98.8 2.2E-07 4.7E-12 81.0 15.4 292 90-408 7-369 (558)
301 PF00400 WD40: WD domain, G-be 98.8 2.5E-08 5.5E-13 58.0 6.5 38 363-409 2-39 (39)
302 COG5170 CDC55 Serine/threonine 98.8 5.4E-08 1.2E-12 80.6 10.6 212 193-416 25-314 (460)
303 PF08450 SGL: SMP-30/Gluconola 98.8 4.2E-05 9.1E-10 65.7 28.8 207 137-381 4-233 (246)
304 KOG3621 WD40 repeat-containing 98.8 2.5E-06 5.5E-11 78.8 21.9 144 94-253 37-187 (726)
305 PF00400 WD40: WD domain, G-be 98.8 3E-08 6.5E-13 57.6 6.3 37 82-118 1-39 (39)
306 cd00216 PQQ_DH Dehydrogenases 98.8 2.9E-05 6.2E-10 73.6 29.1 273 101-416 60-429 (488)
307 KOG2066 Vacuolar assembly/sort 98.8 8E-07 1.7E-11 83.2 17.6 187 132-358 39-234 (846)
308 KOG2066 Vacuolar assembly/sort 98.7 6.5E-07 1.4E-11 83.7 15.6 186 193-413 38-235 (846)
309 KOG2114 Vacuolar assembly/sort 98.7 2E-06 4.3E-11 81.2 18.7 202 201-415 30-247 (933)
310 COG4946 Uncharacterized protei 98.7 2.8E-05 6E-10 68.7 24.5 139 86-248 353-500 (668)
311 PF15492 Nbas_N: Neuroblastoma 98.7 1.7E-05 3.6E-10 65.8 21.9 192 94-318 45-264 (282)
312 KOG1832 HIV-1 Vpr-binding prot 98.7 8.3E-09 1.8E-13 96.9 3.0 196 80-317 1089-1295(1516)
313 KOG1920 IkappaB kinase complex 98.7 8.6E-06 1.9E-10 80.0 22.9 219 90-314 66-323 (1265)
314 KOG1645 RING-finger-containing 98.7 1.6E-06 3.5E-11 74.7 15.8 255 114-412 175-462 (463)
315 KOG1275 PAB-dependent poly(A) 98.7 7.4E-07 1.6E-11 84.4 14.4 149 92-263 177-340 (1118)
316 KOG1920 IkappaB kinase complex 98.6 6.2E-05 1.3E-09 74.2 26.7 238 131-410 67-364 (1265)
317 KOG2114 Vacuolar assembly/sort 98.6 3E-05 6.5E-10 73.5 23.5 203 94-313 27-243 (933)
318 PF06433 Me-amine-dh_H: Methyl 98.5 8.4E-05 1.8E-09 64.4 22.9 274 112-417 17-326 (342)
319 PRK04043 tolB translocation pr 98.5 0.00023 5.1E-09 65.7 27.6 207 113-358 170-401 (419)
320 PRK04043 tolB translocation pr 98.5 0.00011 2.3E-09 68.0 25.3 190 196-412 189-401 (419)
321 KOG0882 Cyclophilin-related pe 98.5 1.2E-06 2.5E-11 76.6 11.0 207 192-417 7-237 (558)
322 PF08596 Lgl_C: Lethal giant l 98.5 0.00027 5.8E-09 64.3 26.7 251 134-400 3-325 (395)
323 COG5354 Uncharacterized protei 98.5 2.9E-05 6.3E-10 69.2 19.2 252 115-412 15-307 (561)
324 cd00216 PQQ_DH Dehydrogenases 98.5 0.00032 6.9E-09 66.6 27.7 250 103-369 111-433 (488)
325 PF08596 Lgl_C: Lethal giant l 98.4 0.00039 8.5E-09 63.2 23.5 210 196-416 3-295 (395)
326 PF07433 DUF1513: Protein of u 98.4 0.0012 2.7E-08 56.6 25.0 222 135-383 7-268 (305)
327 KOG1645 RING-finger-containing 98.3 1.9E-05 4.1E-10 68.3 13.9 74 192-266 191-267 (463)
328 KOG1832 HIV-1 Vpr-binding prot 98.3 5.5E-07 1.2E-11 85.1 5.1 195 190-416 1097-1296(1516)
329 PF11768 DUF3312: Protein of u 98.3 0.0016 3.4E-08 60.0 26.2 115 195-317 206-333 (545)
330 KOG1008 Uncharacterized conser 98.2 7.8E-07 1.7E-11 81.1 3.3 204 93-314 57-276 (783)
331 KOG3617 WD40 and TPR repeat-co 98.2 2.5E-05 5.5E-10 73.9 12.9 70 196-265 61-131 (1416)
332 KOG1008 Uncharacterized conser 98.2 7E-07 1.5E-11 81.5 2.5 203 193-412 55-276 (783)
333 PF03178 CPSF_A: CPSF A subuni 98.2 0.0013 2.8E-08 59.0 23.2 181 216-412 2-203 (321)
334 PF08553 VID27: VID27 cytoplas 98.2 0.00014 3.1E-09 70.8 17.1 199 206-412 493-725 (794)
335 PF08553 VID27: VID27 cytoplas 98.2 0.00021 4.6E-09 69.6 18.1 145 103-265 494-647 (794)
336 PRK02888 nitrous-oxide reducta 98.1 0.0031 6.8E-08 59.5 24.5 154 202-358 200-405 (635)
337 PF00780 CNH: CNH domain; Int 98.1 0.0055 1.2E-07 53.6 26.3 244 101-371 6-266 (275)
338 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0037 8E-08 51.5 23.0 140 143-312 24-164 (354)
339 KOG3621 WD40 repeat-containing 98.1 5.9E-05 1.3E-09 70.1 12.5 154 193-346 32-187 (726)
340 PF04053 Coatomer_WDAD: Coatom 98.1 0.0016 3.5E-08 60.2 21.9 224 131-412 31-263 (443)
341 PF07433 DUF1513: Protein of u 98.1 0.002 4.3E-08 55.4 20.7 204 196-416 6-252 (305)
342 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0081 1.8E-07 55.5 26.2 247 83-372 71-326 (410)
343 KOG2444 WD40 repeat protein [G 98.1 6.9E-06 1.5E-10 65.8 5.3 142 249-413 32-179 (238)
344 PF00780 CNH: CNH domain; Int 98.1 0.0069 1.5E-07 53.0 26.6 229 140-416 5-260 (275)
345 PF03178 CPSF_A: CPSF A subuni 98.0 0.0049 1.1E-07 55.2 23.1 192 206-408 42-262 (321)
346 PF06977 SdiA-regulated: SdiA- 98.0 0.0074 1.6E-07 51.1 23.2 204 192-408 19-247 (248)
347 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0093 2E-07 55.1 24.7 196 113-340 62-270 (410)
348 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.001 2.3E-08 47.5 14.1 97 95-219 2-109 (111)
349 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0016 3.4E-08 46.6 14.8 101 197-309 2-110 (111)
350 PF11768 DUF3312: Protein of u 97.9 0.019 4.1E-07 53.2 34.4 111 240-359 209-331 (545)
351 PHA02713 hypothetical protein; 97.8 0.0025 5.4E-08 61.5 19.4 192 205-416 303-538 (557)
352 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.034 7.3E-07 53.3 29.9 114 101-233 68-198 (527)
353 PRK02888 nitrous-oxide reducta 97.7 0.036 7.7E-07 52.7 24.2 106 205-314 287-405 (635)
354 PF04053 Coatomer_WDAD: Coatom 97.7 0.031 6.6E-07 51.9 23.2 221 91-357 31-262 (443)
355 COG3386 Gluconolactonase [Carb 97.7 0.029 6.2E-07 49.3 21.6 211 103-339 38-264 (307)
356 KOG3617 WD40 and TPR repeat-co 97.7 0.00045 9.7E-09 65.9 10.6 109 197-313 18-131 (1416)
357 smart00320 WD40 WD40 repeats. 97.7 0.0002 4.4E-09 40.6 5.7 37 82-118 2-40 (40)
358 smart00320 WD40 WD40 repeats. 97.6 0.00016 3.6E-09 41.0 5.2 38 363-409 3-40 (40)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.067 1.4E-06 51.3 30.6 167 99-265 117-333 (527)
360 COG3386 Gluconolactonase [Carb 97.6 0.04 8.7E-07 48.4 22.5 179 193-382 64-264 (307)
361 PHA02713 hypothetical protein; 97.6 0.013 2.8E-07 56.6 19.6 146 205-359 351-535 (557)
362 KOG4441 Proteins containing BT 97.5 0.046 1E-06 52.8 22.0 225 102-359 285-548 (571)
363 KOG4640 Anaphase-promoting com 97.5 0.00067 1.4E-08 62.6 8.9 94 193-292 19-114 (665)
364 KOG4640 Anaphase-promoting com 97.5 0.00058 1.3E-08 63.0 8.5 92 132-246 20-115 (665)
365 KOG2395 Protein involved in va 97.5 0.028 6.1E-07 51.4 18.5 143 105-265 349-500 (644)
366 KOG2395 Protein involved in va 97.4 0.0045 9.7E-08 56.3 13.4 139 145-313 349-500 (644)
367 KOG4441 Proteins containing BT 97.4 0.029 6.4E-07 54.1 19.8 195 198-415 326-550 (571)
368 COG3391 Uncharacterized conser 97.4 0.11 2.4E-06 47.7 25.6 196 136-359 77-285 (381)
369 PRK13616 lipoprotein LpqB; Pro 97.4 0.05 1.1E-06 52.6 20.7 150 197-353 399-564 (591)
370 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.1 2.2E-06 47.5 21.4 70 194-264 42-130 (353)
371 PF00930 DPPIV_N: Dipeptidyl p 97.3 0.12 2.6E-06 47.0 21.9 51 111-162 22-73 (353)
372 COG5276 Uncharacterized conser 97.3 0.089 1.9E-06 44.6 26.9 264 88-381 37-309 (370)
373 COG0823 TolB Periplasmic compo 97.3 0.043 9.4E-07 50.7 18.2 163 122-313 182-358 (425)
374 PRK13616 lipoprotein LpqB; Pro 97.2 0.058 1.3E-06 52.2 19.4 196 195-407 350-564 (591)
375 PF06433 Me-amine-dh_H: Methyl 97.1 0.13 2.8E-06 45.2 18.8 231 101-369 46-329 (342)
376 KOG2079 Vacuolar assembly/sort 97.1 0.003 6.5E-08 62.2 9.7 111 132-265 89-203 (1206)
377 PF06977 SdiA-regulated: SdiA- 97.1 0.15 3.3E-06 43.3 25.6 204 88-310 17-247 (248)
378 PF05694 SBP56: 56kDa selenium 97.0 0.25 5.5E-06 44.8 22.2 197 102-318 87-347 (461)
379 COG5276 Uncharacterized conser 96.9 0.2 4.4E-06 42.5 30.9 279 91-411 85-369 (370)
380 KOG2444 WD40 repeat protein [G 96.9 0.0031 6.7E-08 51.0 6.4 137 107-265 35-177 (238)
381 PHA03098 kelch-like protein; P 96.9 0.12 2.6E-06 50.1 18.7 190 204-414 293-514 (534)
382 KOG2079 Vacuolar assembly/sort 96.9 0.043 9.3E-07 54.6 14.9 108 92-223 89-202 (1206)
383 PHA02790 Kelch-like protein; P 96.9 0.14 3E-06 48.7 18.5 185 205-414 271-473 (480)
384 TIGR03074 PQQ_membr_DH membran 96.8 0.53 1.2E-05 47.1 22.4 124 101-234 193-354 (764)
385 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0051 1.1E-07 36.6 4.8 35 193-228 10-44 (47)
386 PHA03098 kelch-like protein; P 96.7 0.22 4.8E-06 48.3 18.7 157 205-371 342-524 (534)
387 COG0823 TolB Periplasmic compo 96.6 0.061 1.3E-06 49.8 13.3 159 193-360 191-361 (425)
388 PF02897 Peptidase_S9_N: Proly 96.6 0.67 1.4E-05 43.3 29.6 200 197-411 126-357 (414)
389 KOG4499 Ca2+-binding protein R 96.5 0.37 8.1E-06 39.6 18.1 216 101-340 26-264 (310)
390 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.3E-07 35.3 5.0 34 372-415 11-44 (47)
391 KOG1897 Damage-specific DNA bi 96.4 1.2 2.5E-05 44.6 29.1 111 288-414 779-901 (1096)
392 PF14870 PSII_BNR: Photosynthe 96.4 0.58 1.3E-05 41.1 26.3 157 193-354 143-301 (302)
393 PF10168 Nup88: Nuclear pore c 96.4 1.2 2.6E-05 44.3 22.0 70 195-265 85-179 (717)
394 PF14583 Pectate_lyase22: Olig 96.3 0.76 1.6E-05 41.4 24.1 189 101-315 46-274 (386)
395 PF02897 Peptidase_S9_N: Proly 96.3 0.96 2.1E-05 42.3 26.7 244 135-415 126-408 (414)
396 PF14870 PSII_BNR: Photosynthe 96.3 0.69 1.5E-05 40.6 33.4 286 80-408 6-301 (302)
397 COG3204 Uncharacterized protei 96.2 0.67 1.5E-05 39.6 19.5 166 128-314 81-264 (316)
398 KOG2377 Uncharacterized conser 96.2 0.19 4.1E-06 45.4 13.3 138 240-383 26-164 (657)
399 KOG3630 Nuclear pore complex, 96.2 0.09 1.9E-06 52.7 12.2 139 195-340 101-254 (1405)
400 KOG1916 Nuclear protein, conta 96.2 0.018 3.9E-07 56.0 7.3 194 215-415 110-327 (1283)
401 KOG4499 Ca2+-binding protein R 96.1 0.19 4.1E-06 41.2 11.6 100 136-248 161-265 (310)
402 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 1.2 2.5E-05 41.1 18.9 40 102-142 79-118 (415)
403 KOG2280 Vacuolar assembly/sort 96.0 1.5 3.3E-05 42.5 18.9 181 112-320 64-253 (829)
404 KOG1916 Nuclear protein, conta 95.9 0.0027 5.8E-08 61.3 0.8 235 111-412 110-375 (1283)
405 PF14727 PHTB1_N: PTHB1 N-term 95.9 1.4 3.1E-05 40.6 28.7 283 102-416 37-365 (418)
406 PF08728 CRT10: CRT10; InterP 95.9 0.32 7E-06 47.4 14.4 112 294-410 113-245 (717)
407 KOG1897 Damage-specific DNA bi 95.8 2.5 5.3E-05 42.5 29.2 284 88-413 302-615 (1096)
408 PF15390 DUF4613: Domain of un 95.7 0.56 1.2E-05 44.0 14.3 116 192-312 54-185 (671)
409 PHA02790 Kelch-like protein; P 95.6 1.3 2.8E-05 42.2 17.3 142 205-359 318-472 (480)
410 PF12234 Rav1p_C: RAVE protein 95.6 1.1 2.4E-05 43.4 16.5 113 198-312 33-155 (631)
411 PF05694 SBP56: 56kDa selenium 95.5 0.51 1.1E-05 42.9 13.3 116 111-226 221-344 (461)
412 PF05096 Glu_cyclase_2: Glutam 95.5 1.4 3E-05 37.5 22.1 185 196-400 46-250 (264)
413 COG3391 Uncharacterized conser 95.4 2.2 4.8E-05 39.3 28.8 200 196-415 75-287 (381)
414 PF12234 Rav1p_C: RAVE protein 95.3 1.2 2.5E-05 43.2 15.9 120 278-411 24-156 (631)
415 COG5167 VID27 Protein involved 95.2 1 2.3E-05 41.5 14.2 145 204-357 477-632 (776)
416 TIGR03074 PQQ_membr_DH membran 95.1 4.3 9.3E-05 41.0 20.7 60 206-265 194-278 (764)
417 PF08728 CRT10: CRT10; InterP 95.0 2.3 5E-05 41.8 16.7 112 197-312 103-245 (717)
418 KOG3630 Nuclear pore complex, 94.9 0.17 3.6E-06 51.0 9.2 125 101-248 111-255 (1405)
419 COG3204 Uncharacterized protei 94.9 2.2 4.7E-05 36.7 20.3 167 192-359 83-265 (316)
420 KOG2247 WD40 repeat-containing 94.8 0.00064 1.4E-08 60.9 -6.6 250 101-382 45-305 (615)
421 COG3490 Uncharacterized protei 94.7 2.4 5.1E-05 36.2 18.6 98 135-252 70-178 (366)
422 COG5167 VID27 Protein involved 94.7 2.1 4.6E-05 39.6 14.6 139 106-265 484-632 (776)
423 PF15390 DUF4613: Domain of un 94.5 4.5 9.8E-05 38.4 17.8 153 92-265 19-186 (671)
424 PF10168 Nup88: Nuclear pore c 94.2 6.7 0.00014 39.3 21.0 35 192-226 144-181 (717)
425 KOG2280 Vacuolar assembly/sort 94.2 4.8 0.0001 39.3 16.4 49 216-265 64-112 (829)
426 PRK13684 Ycf48-like protein; P 94.1 4.3 9.3E-05 36.6 24.6 155 194-356 172-330 (334)
427 PF10313 DUF2415: Uncharacteri 93.9 0.3 6.6E-06 28.2 5.1 31 195-225 1-34 (43)
428 PF07569 Hira: TUP1-like enhan 93.9 0.5 1.1E-05 39.4 8.8 64 202-265 18-95 (219)
429 PF14655 RAB3GAP2_N: Rab3 GTPa 93.6 0.52 1.1E-05 43.3 9.0 76 190-265 303-398 (415)
430 PRK14131 N-acetylneuraminic ac 93.3 6.5 0.00014 36.2 21.7 40 307-348 314-353 (376)
431 KOG2247 WD40 repeat-containing 93.2 0.014 3E-07 52.8 -1.6 147 193-351 33-182 (615)
432 PF07569 Hira: TUP1-like enhan 93.0 0.7 1.5E-05 38.6 8.3 73 331-413 14-97 (219)
433 KOG2377 Uncharacterized conser 92.9 3 6.4E-05 38.1 12.2 105 192-302 64-172 (657)
434 PRK10115 protease 2; Provision 92.8 12 0.00025 37.7 24.1 196 196-412 128-345 (686)
435 PF10647 Gmad1: Lipoprotein Lp 92.8 5.8 0.00013 34.1 23.0 110 196-305 67-187 (253)
436 PF07995 GSDH: Glucose / Sorbo 92.8 7.2 0.00016 35.1 27.7 59 339-406 271-330 (331)
437 KOG1900 Nuclear pore complex, 92.8 3.1 6.7E-05 43.2 13.4 156 135-314 81-273 (1311)
438 COG3490 Uncharacterized protei 92.6 6 0.00013 33.9 16.3 102 196-302 69-180 (366)
439 PF10313 DUF2415: Uncharacteri 92.6 0.46 1E-05 27.5 4.5 35 373-413 1-35 (43)
440 KOG1898 Splicing factor 3b, su 92.4 14 0.00031 37.8 20.2 176 217-412 854-1049(1205)
441 KOG1900 Nuclear pore complex, 92.4 5.4 0.00012 41.6 14.7 141 109-265 96-272 (1311)
442 COG4257 Vgb Streptogramin lyas 92.4 6.4 0.00014 33.6 16.5 194 194-413 61-264 (353)
443 TIGR03547 muta_rot_YjhT mutatr 92.4 8.3 0.00018 35.0 21.7 41 306-348 291-331 (346)
444 PF14761 HPS3_N: Hermansky-Pud 92.0 6 0.00013 32.5 16.1 146 207-356 29-213 (215)
445 PRK13684 Ycf48-like protein; P 92.0 9.2 0.0002 34.5 32.4 157 236-410 172-330 (334)
446 TIGR03548 mutarot_permut cycli 91.7 9.7 0.00021 34.2 20.0 61 205-265 123-194 (323)
447 COG3823 Glutamine cyclotransfe 91.6 6.5 0.00014 32.0 12.7 179 205-400 55-248 (262)
448 PF08801 Nucleoporin_N: Nup133 91.6 2.4 5.2E-05 39.7 11.0 31 284-314 190-220 (422)
449 PF05096 Glu_cyclase_2: Glutam 91.1 9 0.0002 32.8 25.4 195 79-302 30-249 (264)
450 KOG4460 Nuclear pore complex, 91.0 11 0.00024 35.3 13.7 26 196-221 105-130 (741)
451 KOG1983 Tomosyn and related SN 90.6 4.9 0.00011 41.9 12.8 33 193-225 34-66 (993)
452 PF10647 Gmad1: Lipoprotein Lp 90.5 11 0.00023 32.5 17.0 151 238-407 25-192 (253)
453 TIGR02604 Piru_Ver_Nterm putat 90.5 14 0.0003 33.9 16.2 147 94-253 15-200 (367)
454 PF11715 Nup160: Nucleoporin N 90.4 0.92 2E-05 44.2 7.2 91 141-232 157-256 (547)
455 PLN02193 nitrile-specifier pro 90.3 17 0.00037 34.7 21.8 147 205-359 228-412 (470)
456 PF08801 Nucleoporin_N: Nup133 89.7 18 0.00039 33.9 16.1 31 373-412 190-220 (422)
457 KOG1896 mRNA cleavage and poly 89.5 30 0.00064 36.3 18.8 115 192-313 1095-1213(1366)
458 PLN02153 epithiospecifier prot 89.5 16 0.00035 33.1 20.9 23 205-227 32-61 (341)
459 PF03022 MRJP: Major royal jel 89.2 15 0.00032 32.3 22.4 185 113-301 35-253 (287)
460 TIGR03547 muta_rot_YjhT mutatr 89.1 17 0.00037 33.0 21.5 23 205-227 63-96 (346)
461 PF12341 DUF3639: Protein of u 89.1 1.5 3.3E-05 22.4 4.0 24 94-117 3-26 (27)
462 PF07995 GSDH: Glucose / Sorbo 89.0 17 0.00037 32.8 19.6 106 196-303 3-133 (331)
463 PRK14131 N-acetylneuraminic ac 88.8 19 0.00042 33.1 22.5 14 335-348 276-289 (376)
464 smart00036 CNH Domain found in 88.8 16 0.00036 32.3 24.4 208 193-417 41-276 (302)
465 PF07250 Glyoxal_oxid_N: Glyox 88.7 14 0.0003 31.4 12.3 139 218-359 48-199 (243)
466 TIGR02276 beta_rpt_yvtn 40-res 88.4 2.8 6.1E-05 23.8 5.7 31 204-234 1-32 (42)
467 PF11715 Nup160: Nucleoporin N 87.8 3.4 7.5E-05 40.3 9.2 72 338-415 157-252 (547)
468 COG1520 FOG: WD40-like repeat 87.6 23 0.00049 32.6 27.4 196 101-321 67-276 (370)
469 COG4590 ABC-type uncharacteriz 87.6 10 0.00023 34.8 10.9 170 230-415 214-390 (733)
470 PF14781 BBS2_N: Ciliary BBSom 87.6 10 0.00022 28.5 12.3 111 243-359 5-127 (136)
471 PLN02153 epithiospecifier prot 87.5 22 0.00047 32.2 22.7 23 205-227 85-112 (341)
472 KOG2714 SETA binding protein S 87.4 20 0.00044 32.7 12.5 130 144-315 237-373 (465)
473 COG5308 NUP170 Nuclear pore co 87.4 35 0.00075 34.6 14.9 142 109-265 99-275 (1263)
474 TIGR03118 PEPCTERM_chp_1 conse 87.4 19 0.00041 31.4 22.2 214 195-416 23-284 (336)
475 TIGR02604 Piru_Ver_Nterm putat 87.1 24 0.00052 32.4 14.9 71 238-312 15-98 (367)
476 PF14779 BBS1: Ciliary BBSome 87.0 18 0.00039 30.8 14.3 70 192-262 174-255 (257)
477 KOG2063 Vacuolar assembly/sort 86.9 40 0.00086 34.6 15.7 68 97-164 21-100 (877)
478 TIGR03118 PEPCTERM_chp_1 conse 86.5 22 0.00047 31.1 21.4 230 135-383 25-308 (336)
479 PF02333 Phytase: Phytase; In 86.3 26 0.00057 32.0 23.0 203 203-413 65-292 (381)
480 PF12657 TFIIIC_delta: Transcr 85.8 8.1 0.00017 30.9 8.8 37 373-412 86-122 (173)
481 PLN02193 nitrile-specifier pro 85.6 34 0.00074 32.7 21.6 64 294-359 278-353 (470)
482 smart00564 PQQ beta-propeller 85.2 2.5 5.3E-05 22.6 4.0 27 206-232 6-32 (33)
483 PF12768 Rax2: Cortical protei 84.6 27 0.00058 30.5 14.3 116 257-383 16-147 (281)
484 COG3292 Predicted periplasmic 84.4 39 0.00085 32.3 16.2 148 91-263 163-316 (671)
485 PF14761 HPS3_N: Hermansky-Pud 84.3 22 0.00048 29.3 16.1 66 240-310 21-92 (215)
486 KOG0783 Uncharacterized conser 83.9 49 0.0011 33.3 14.0 32 133-164 229-260 (1267)
487 PF14727 PHTB1_N: PTHB1 N-term 83.8 37 0.00081 31.6 23.3 144 143-313 38-204 (418)
488 PF10433 MMS1_N: Mono-function 83.8 43 0.00094 32.3 22.2 231 144-415 224-480 (504)
489 COG3823 Glutamine cyclotransfe 83.5 23 0.00051 29.0 13.9 105 98-227 51-161 (262)
490 PF01011 PQQ: PQQ enzyme repea 83.2 3.1 6.7E-05 23.3 3.8 27 208-234 2-28 (38)
491 smart00564 PQQ beta-propeller 83.1 3.5 7.7E-05 21.9 4.0 27 101-127 5-31 (33)
492 PF09826 Beta_propel: Beta pro 82.6 49 0.0011 32.0 15.9 182 214-414 302-521 (521)
493 KOG2006 WD40 repeat protein [G 82.4 11 0.00025 38.3 9.6 68 95-162 153-227 (1023)
494 TIGR03548 mutarot_permut cycli 82.3 37 0.0008 30.4 18.1 24 204-227 170-197 (323)
495 PF12657 TFIIIC_delta: Transcr 81.9 16 0.00035 29.2 9.0 31 195-225 86-122 (173)
496 PLN00033 photosystem II stabil 81.6 45 0.00097 30.9 32.4 289 78-408 73-396 (398)
497 COG4590 ABC-type uncharacteriz 80.7 11 0.00023 34.7 8.0 161 193-359 219-388 (733)
498 PF14779 BBS1: Ciliary BBSome 80.3 21 0.00046 30.5 9.3 68 90-157 174-255 (257)
499 PF14781 BBS2_N: Ciliary BBSom 80.1 23 0.0005 26.7 12.8 105 102-232 10-133 (136)
500 KOG1983 Tomosyn and related SN 80.0 36 0.00077 35.9 12.7 24 292-315 243-266 (993)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-53 Score=347.46 Aligned_cols=321 Identities=25% Similarity=0.395 Sum_probs=289.5
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEe
Q 046226 45 PRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIW 117 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iw 117 (434)
.+....+.+|..++-+..|++++..+++++.|.+++.|.+ +.+.++|...|.|++| ||..||+|+.||.|++|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 3456789999999999999999999999999999998887 6789999999999999 99999999999999999
Q ss_pred cCCCceeE-eeccCCCccEEEEEEeCC-------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccc
Q 046226 118 KQPEFTEC-GRLKAKTSMVVAMEVSHD-------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDK 189 (434)
Q Consensus 118 d~~~~~~~-~~~~~~~~~v~~l~~~~~-------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (434)
|.++++++ ..+.+|...|++++|.|- +|++++.||.|+|||+..+..+..+.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-------------------- 244 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-------------------- 244 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec--------------------
Confidence 99998766 458999999999999873 78999999999999998776655553
Q ss_pred ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEc-----------CCC----------
Q 046226 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-----------DDG---------- 248 (434)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------~~~---------- 248 (434)
+|..+|+|+.|-. ..+|++|+.|++|++|+...|++...+++|...|+.++.+ +.+
T Consensus 245 --gHT~~VTCvrwGG-~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 245 --GHTASVTCVRWGG-EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred --cCccceEEEEEcC-CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 7999999999964 4589999999999999999999999999999999999887 111
Q ss_pred ----------------eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 249 ----------------VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 249 ----------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
.|++|+.|.++.+|+.. ...+.+..+.+|..-|+.+.|+||++++++++-|..|++||.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~-----~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPF-----KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEeccc-----ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 49999999999999855 556677788999999999999999999999999999999996
Q ss_pred CcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226 313 GWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE 390 (434)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 390 (434)
+ ..++...+.+|...|..++|+.+ +|++|+.|.++++|++++. +....+.||.+.|.++.|+|+
T Consensus 397 ~----tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---Kl~~DLpGh~DEVf~vDwspD------- 462 (480)
T KOG0271|consen 397 R----TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---KLKQDLPGHADEVFAVDWSPD------- 462 (480)
T ss_pred C----CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---eecccCCCCCceEEEEEecCC-------
Confidence 5 44566788899999999999754 9999999999999999987 788899999999999999999
Q ss_pred CcccEEEEeecCCeEEEEe
Q 046226 391 DEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 391 ~~~~~l~s~~~Dg~v~iw~ 409 (434)
|..+++|+.|..+++|.
T Consensus 463 --G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 --GQRVASGGKDKVLRLWR 479 (480)
T ss_pred --CceeecCCCceEEEeec
Confidence 99999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-50 Score=333.60 Aligned_cols=296 Identities=24% Similarity=0.380 Sum_probs=263.8
Q ss_pred ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226 79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI 154 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i 154 (434)
....+|-.++.||.++|.|+.| +|..|++|+.|.++|+||+.+..+..+.++|...|.|++|+|| .|++|+.||+|
T Consensus 102 rpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I 181 (480)
T KOG0271|consen 102 RPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSI 181 (480)
T ss_pred cccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeE
Confidence 4457788889999999999999 8999999999999999999999999999999999999999998 89999999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-----CCCEEEEEecCCcEEEEEcCCCeeE
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-----SDDTLYSASLDKTIKVWRIRDSKCI 229 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~ 229 (434)
++||..+++.+... +.+|...|++++|.| ..++|++++.||.|+|||+..++++
T Consensus 182 ~lwdpktg~~~g~~---------------------l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~ 240 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRA---------------------LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV 240 (480)
T ss_pred EEecCCCCCccccc---------------------ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE
Confidence 99998877654432 237999999999976 5789999999999999999999999
Q ss_pred EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe-----------cCC---
Q 046226 230 ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT-----------LDD--- 295 (434)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~--- 295 (434)
..+.+|..+|+|+.|-.++++++|+.|++|++|+.. .......+.+|...|+.++.+ |.+
T Consensus 241 ~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~------dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL------DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred EEeccCccceEEEEEcCCceEEecCCCceEEEEEcc------chhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 999999999999999989999999999999999876 355677788999999988876 223
Q ss_pred ----------------------CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcE
Q 046226 296 ----------------------GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTS 351 (434)
Q Consensus 296 ----------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 351 (434)
..|++|+.|.++.+|+-.. ..+....+.+|...|..+.|+ ++++++++.|..|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~---~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK---SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc---cccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 3599999999999998642 333445677999999988886 5699999999999
Q ss_pred EEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
++||.+++ +.+..|+||-++|+.++|+.| .++|++|+.|.++++|++.+.+..
T Consensus 392 kLW~g~tG---k~lasfRGHv~~VYqvawsaD---------sRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 392 KLWDGRTG---KFLASFRGHVAAVYQVAWSAD---------SRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred eeeeCCCc---chhhhhhhccceeEEEEeccC---------ccEEEEcCCCceEEEEEeeeeeec
Confidence 99999999 899999999999999999998 899999999999999999987743
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-49 Score=331.51 Aligned_cols=281 Identities=21% Similarity=0.350 Sum_probs=259.8
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEee
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWR 158 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd 158 (434)
...-.+-+.+|..+.| +++.|+||+.+|.++||+..+...+..+.+|...|.++.|+|. .+++|+.||++++|+
T Consensus 168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3344567889999999 9999999999999999999999999999999999999999995 799999999999999
Q ss_pred cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226 159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 238 (434)
+.+...+..+. +|...|..++|+|+|++|++++.|.+-++||++++..+....+|...
T Consensus 248 ~~~e~~l~~l~----------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~ 305 (459)
T KOG0272|consen 248 LSQETPLQDLE----------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG 305 (459)
T ss_pred cCCCcchhhhh----------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc
Confidence 98776665553 79999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
|.+++|.+|| ++++|+.|..-+|||++ ....+..+.+|..+|.+++|+|+|..|++|+.|++++|||++....
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlR------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLR------TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecc------cCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence 9999999999 99999999999999999 6677888999999999999999999999999999999999986554
Q ss_pred cccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 318 QLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
...+.+|...|..+.|+ |.+|++++.|++++||...+. .+++.+.||.+.|.+++++++ ++
T Consensus 380 ----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d---------~~ 443 (459)
T KOG0272|consen 380 ----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPD---------SQ 443 (459)
T ss_pred ----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccC---------Cc
Confidence 34678999999888886 569999999999999998887 899999999999999999999 99
Q ss_pred EEEEeecCCeEEEEe
Q 046226 395 TICTGSLDGVLKMWR 409 (434)
Q Consensus 395 ~l~s~~~Dg~v~iw~ 409 (434)
.|+|++.|.++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999996
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.9e-44 Score=285.50 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=256.0
Q ss_pred ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226 81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRV 156 (434)
Q Consensus 81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~v 156 (434)
..+..++|++|.+.|.++.| +.++|++++.||.+.|||.-+...+..+......|..++|+|. .++.|+.|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34556889999999999999 9999999999999999999999999999999999999999997 7888888999999
Q ss_pred eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226 157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS 236 (434)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 236 (434)
|++.+.+......+. ..+.+|.+.+.|+.|.. ...|++++.|.+..+||+++++.+..|.+|.
T Consensus 124 y~ls~~d~~g~~~v~----------------r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVS----------------RELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred Eecccccccccceee----------------eeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCc
Confidence 999865322211110 12347999999999976 6689999999999999999999999999999
Q ss_pred cCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 237 EPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 237 ~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
+.|.++.++| ++ .+++|+-|+..++||++ .......+.+|+..|++++|.|+|.-+++|+.|++.++||++.
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R------~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR------SGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeecc------CcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999999 66 99999999999999999 4567788999999999999999999999999999999999987
Q ss_pred ccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCc
Q 046226 315 FSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDE 392 (434)
Q Consensus 315 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 392 (434)
......+.. ..-...|++++|+ |++|++|..|..+.+||.-.+ +.+..+.+|.+.|.++..+|+
T Consensus 261 D~~~a~ys~--~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~D--------- 326 (343)
T KOG0286|consen 261 DQELAVYSH--DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPD--------- 326 (343)
T ss_pred CcEEeeecc--CcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCC---------
Confidence 665555432 2334577888885 899999999999999999887 788889999999999999999
Q ss_pred ccEEEEeecCCeEEEEe
Q 046226 393 YCTICTGSLDGVLKMWR 409 (434)
Q Consensus 393 ~~~l~s~~~Dg~v~iw~ 409 (434)
|..++||+.|.++|||.
T Consensus 327 G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcEEEecchhHheeecC
Confidence 99999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-44 Score=301.46 Aligned_cols=271 Identities=19% Similarity=0.279 Sum_probs=246.3
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEecCCCce
Q 046226 53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIWKQPEFT 123 (434)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~ 123 (434)
+-..++....++.+...+++++-.+..+.| +.+.+|.+|.+.|.++.| ++..+|||+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 455778888899999999999977766555 458899999999999999 36699999999999999999999
Q ss_pred eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226 124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201 (434)
Q Consensus 124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 201 (434)
++..+.+|...|..++|+|+ +|.+++.|.+-++||+.++..+...+ +|...|.+++
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE----------------------GHs~~v~~ia 310 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE----------------------GHSKGVFSIA 310 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc----------------------ccccccceeE
Confidence 99999999999999999997 89999999999999999876655543 7999999999
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT 280 (434)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 280 (434)
|++||.++++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+| .|+||+.|++++|||++ .......+.
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR------~r~~ly~ip 384 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR------MRSELYTIP 384 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec------ccccceecc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999 444588899
Q ss_pred ccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226 281 AKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA 355 (434)
Q Consensus 281 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 355 (434)
+|..-|+.++|+| .|.+|++++.|++++||.- ....+.+.+.||.+.|.+++.+ +.++++++.|.++++|.
T Consensus 385 AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~----~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 385 AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST----RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccchhhheEecccCCeEEEEcccCcceeeecC----CCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999998 7889999999999999985 4556667889999999998875 66899999999999995
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.9e-42 Score=269.68 Aligned_cols=285 Identities=20% Similarity=0.318 Sum_probs=239.0
Q ss_pred CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR 181 (434)
Q Consensus 103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
-+|++++.|.+||+|...+|.+..+++...+.|+.+...|+ ..+++.....|++||+++.+......
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t------------ 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT------------ 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeE------------
Confidence 47999999999999999999999999999999999999998 56666667889999998776532221
Q ss_pred EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEE
Q 046226 182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVR 260 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~ 260 (434)
+.+|.+.|+++.|..+|+++++|++||+++|||++...+.+.++ |..+|+++..+|+. .|++|..+|.|+
T Consensus 79 --------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 79 --------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred --------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEE
Confidence 12699999999999999999999999999999999966655554 77999999999998 999999999999
Q ss_pred EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc--ccccccCcccCcccceEEEEee
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS--AQLQYGGALQGHTHAVMCLASV 338 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~~ 338 (434)
+||+.. ..... .........|.++.+.|||.+++.+...|+.++|++-... ..++....++.|...+..+.++
T Consensus 150 vWDl~~--~~c~~---~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 150 VWDLGE--NSCTH---ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred EEEccC--Ccccc---ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 999981 11111 2233444689999999999999999999999999986432 3344556788999888777665
Q ss_pred --CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 339 --ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 339 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+++|++++.|.+++||+.++. .+....+.+|...++..+|+-+ |.||+||+.|+.+++|++..++..
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~d---------g~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSAD---------GEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccC---------ccEEEecCCCCceeecccccCcee
Confidence 679999999999999999875 4667788999999999999999 999999999999999999999976
Q ss_pred cccccccc
Q 046226 417 CGHLNKTN 424 (434)
Q Consensus 417 ~~~~~~~~ 424 (434)
........
T Consensus 294 ~qy~gh~K 301 (311)
T KOG0315|consen 294 RQYQGHHK 301 (311)
T ss_pred eecCCccc
Confidence 55443333
No 7
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.4e-42 Score=282.03 Aligned_cols=297 Identities=21% Similarity=0.372 Sum_probs=262.5
Q ss_pred CCCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc
Q 046226 75 SPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG 150 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~ 150 (434)
.++.-..|+.-+.+.+|.+.|.|+++ .+++|+||+.|++|+|||+.++++..++.+|-..|..+++++. ++++++.
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 45566778888999999999999999 6889999999999999999999999999999999999999986 9999999
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE 230 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 230 (434)
|+.|+.||++.++.++.+. +|-..|.|++.+|.-..|++|+.|.++++||+++...+.
T Consensus 214 dk~VKCwDLe~nkvIR~Yh----------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~ 271 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYH----------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH 271 (460)
T ss_pred CCeeEEEechhhhhHHHhc----------------------cccceeEEEeccccceeEEecCCcceEEEeeecccceEE
Confidence 9999999999888887763 899999999999999999999999999999999999999
Q ss_pred EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226 231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY 309 (434)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 309 (434)
.+.+|..+|..+.+.|-. .+++|+.|++|++||++ ..+....+..|...+.+++.+|....+++++.|. |+-
T Consensus 272 ~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~------agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~ 344 (460)
T KOG0285|consen 272 VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR------AGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQ 344 (460)
T ss_pred EecCCCCcceeEEeecCCCceEEecCCceEEEeeec------cCceeEeeecccceeeEEecCCchhhhhccCCcc-cee
Confidence 999999999999999876 99999999999999998 4556677788999999999999999999998775 899
Q ss_pred EEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeec-----cccceeEEEEeec
Q 046226 310 WHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVG-----HRGPIRCAIAFLG 383 (434)
Q Consensus 310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~ 383 (434)
|++. ...+...+.+|...|.+++.+ ..++++|+++|.+.+||.+++..++..++... ....|.+.+|...
T Consensus 345 w~~p----~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt 420 (460)
T KOG0285|consen 345 WKLP----EGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT 420 (460)
T ss_pred ccCC----ccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence 9974 344445688999999999987 55999999999999999999865555433322 2346788888877
Q ss_pred ccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 384 RFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 384 ~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
|..|+||..|.+|++|.-+..
T Consensus 421 ---------g~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 421 ---------GSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ---------CceEEeccCCcceEEEecccc
Confidence 899999999999999986644
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-41 Score=268.64 Aligned_cols=284 Identities=22% Similarity=0.317 Sum_probs=238.6
Q ss_pred eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCC-----CceeEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226 82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQP-----EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD 151 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d 151 (434)
.....++.+|.+.|+.++. +.+.+++++.|.++.+|++. .|..++.+++|...|..+..+++ +.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3456789999999999999 67899999999999999874 37778999999999999999997 88999999
Q ss_pred CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET 231 (434)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 231 (434)
+++++||+.+++....+. +|...|.+++|++|++.+++|+.|.+|++|++... +..+
T Consensus 85 ~~lrlWDl~~g~~t~~f~----------------------GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t 141 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFV----------------------GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYT 141 (315)
T ss_pred ceEEEEEecCCcEEEEEE----------------------ecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEE
Confidence 999999998875555543 79999999999999999999999999999998654 4444
Q ss_pred cccC--ccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe
Q 046226 232 IQAH--SEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY 306 (434)
Q Consensus 232 ~~~~--~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 306 (434)
+..+ .+.|.|+.|+|+. .|++++.|++|++||++ ..+....+.+|.+.++.++++|||.+.++|+.||.
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~------~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR------NCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC------CcchhhccccccccEEEEEECCCCCEEecCCCCce
Confidence 4433 7899999999984 99999999999999998 55666778899999999999999999999999999
Q ss_pred EEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEee----cc-----cccee
Q 046226 307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLV----GH-----RGPIR 376 (434)
Q Consensus 307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h-----~~~v~ 376 (434)
+.+||++..+....+ .|...|.+++|+++ +.++...+..|+|||++++. ++..+. +. .-...
T Consensus 216 ~~LwdL~~~k~lysl-----~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 216 AMLWDLNEGKNLYSL-----EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred EEEEEccCCceeEec-----cCCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccCCcEEE
Confidence 999999866553322 67889999999977 55555566779999999873 333222 11 22345
Q ss_pred EEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+++|+++ |..|.+|-.|+.|++|.+.
T Consensus 288 slaws~d---------G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 288 SLAWSAD---------GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEcCC---------CcEEEeeecCCcEEEEEee
Confidence 6888888 9999999999999999975
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=265.68 Aligned_cols=278 Identities=20% Similarity=0.335 Sum_probs=245.1
Q ss_pred CCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEEEee-----ccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226 48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVLK-----KDGQILCIAV--GNGFIYTGSDSNVIRIWKQP 120 (434)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~ 120 (434)
.+.+.+|...+++..+.++.+.+.+++.|+.+-.|....+.+. ....|..++| .|+++|+|+-|+.+.||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 4688999999999999999999999999998887777555444 4778999999 89999999999999999997
Q ss_pred Cc------eeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226 121 EF------TECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH 193 (434)
Q Consensus 121 ~~------~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
+. .....+.+|++.+.|+.|-+| .|++++.|.++.+||+++++.+..+. +|
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~----------------------GH 185 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH----------------------GH 185 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec----------------------CC
Confidence 54 345668999999999999988 99999999999999999887776663 79
Q ss_pred CCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226 194 MGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ 271 (434)
Q Consensus 194 ~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 271 (434)
.+.|.+++++| +++.+++|+.|+..++||++.+.++++|.+|...|+++.|.|+| -+++|+.|++.|+||++..
T Consensus 186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD---- 261 (343)
T KOG0286|consen 186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD---- 261 (343)
T ss_pred cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC----
Confidence 99999999999 89999999999999999999999999999999999999999999 9999999999999999921
Q ss_pred eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS 349 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 349 (434)
.............+|++++|+..|++|++|..|.++.+||. .+.+....+.+|...|.|+..+ |..+++|+.|.
T Consensus 262 ~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt----lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 262 QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT----LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec----cccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 12223334445578999999999999999999999999995 4555566778999999998764 77999999999
Q ss_pred cEEEEe
Q 046226 350 TSRVWA 355 (434)
Q Consensus 350 ~i~iwd 355 (434)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-38 Score=273.66 Aligned_cols=355 Identities=19% Similarity=0.249 Sum_probs=281.2
Q ss_pred CCcccccCCCCCCCC-CCCCCccCCCCCCCccc-----ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226 49 SPISLHTSPLSSPRH-PFNPTAAAGSSSPETSS-----SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP 120 (434)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~ 120 (434)
-++.+|+..+++..+ +..+-+++++++|.++. .|+--.++..|..-|.|+.| ||.++++.+.||.|.+||-.
T Consensus 141 Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 141 GEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred ceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 478899999988765 44566778888887753 46667778889999999999 99999999999999999999
Q ss_pred CceeEeecc---CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCC-----------------CC
Q 046226 121 EFTECGRLK---AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKT-----------------GG 178 (434)
Q Consensus 121 ~~~~~~~~~---~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~-----------------~~ 178 (434)
+++.+..+. +|.+.|.+++|+|| +++++++|.+++|||+.+.+.+..+.+...-.. .+
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 999999998 89999999999998 999999999999999998887776654322000 01
Q ss_pred ceeEEEe----ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-ccCccCeEEEEEcCCCeEEEE
Q 046226 179 AVRNLIV----GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QAHSEPINALVVADDGVLYSA 253 (434)
Q Consensus 179 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~s~ 253 (434)
.+..+.. ......+|...|+++..++++++|++|+.||.|.-||..++..-+.. +.|...|.+++.+..+.++++
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 1111111 12245689999999999999999999999999999999988765444 679999999999987899999
Q ss_pred eCCCeEEEEecccccCcce--------eEE-----------------EEEecc--------cccCeEEEEEecCCCEEEE
Q 046226 254 SDDATVRVWRRYFYSENQL--------HTL-----------------ILTLTA--------KYSPVKTLTLTLDDGLLYG 300 (434)
Q Consensus 254 ~~dg~i~iwd~~~~~~~~~--------~~~-----------------~~~~~~--------~~~~v~~~~~~~~~~~l~~ 300 (434)
+.|.++++.++....-... ... +..+.. ..-...+++++|++..+++
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 9999999997741110000 000 001111 1124568899999999999
Q ss_pred EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226 301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA 378 (434)
Q Consensus 301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 378 (434)
|+.||.|+||.+..... .....+..|.++|++++++ +.+|++|...+.+.+||+.+... ....+.-|...|.++
T Consensus 461 GG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCV 536 (603)
T ss_pred ecccceEEEEEecCCcc--cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEE
Confidence 99999999999975443 2223455899999999986 56999999999999999998743 445566699999999
Q ss_pred EEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+|+|+ ..++|||+.|-.|.||+++.+...
T Consensus 537 aWsP~---------n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 537 AWSPN---------NKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred EeCCC---------ceEEEeccccceEEEEEccChhhh
Confidence 99999 889999999999999999987654
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.1e-41 Score=276.19 Aligned_cols=281 Identities=21% Similarity=0.376 Sum_probs=248.6
Q ss_pred ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226 91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKL 170 (434)
Q Consensus 91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~ 170 (434)
....|+|+.++++.+++|..|++|+|||..+..+...+.+|++.|.|+.|....+++|+.|.+|++||+++++.+..+
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tl-- 273 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTL-- 273 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHH--
Confidence 456799999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe---eEEEcccCccCeEEEEEcCC
Q 046226 171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK---CIETIQAHSEPINALVVADD 247 (434)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~ 247 (434)
.+|...|..+.|+ +.++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+..
T Consensus 274 --------------------ihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k 331 (499)
T KOG0281|consen 274 --------------------IHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 331 (499)
T ss_pred --------------------hhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc
Confidence 3799999999997 7799999999999999997654 44567899999999999744
Q ss_pred CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226 248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG 327 (434)
Q Consensus 248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 327 (434)
++++++.|.+|++|++. ....+..+.+|...|.|+.+ .++++++|+.|.+|++||+..+ .....++|
T Consensus 332 -yIVsASgDRTikvW~~s------t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G----~cLRvLeG 398 (499)
T KOG0281|consen 332 -YIVSASGDRTIKVWSTS------TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG----ACLRVLEG 398 (499)
T ss_pred -eEEEecCCceEEEEecc------ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc----HHHHHHhc
Confidence 99999999999999987 67788899999999998887 5799999999999999998643 44457789
Q ss_pred cccceEEEEeeCCEEEEecCCCcEEEEeccCCCce------eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226 328 HTHAVMCLASVANYVISGSADSTSRVWAREQDGRH------TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL 401 (434)
Q Consensus 328 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 401 (434)
|+.-|.|+.|+.+.+++|+.||+|++||+..+..+ .++..+..|.+.|..+.|. ...|++++.
T Consensus 399 HEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-----------~fqIvsssH 467 (499)
T KOG0281|consen 399 HEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-----------EFQIISSSH 467 (499)
T ss_pred hHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-----------ceEEEeccC
Confidence 99999999999999999999999999999876432 2566778899999999997 457999999
Q ss_pred CCeEEEEecCCCCccccc
Q 046226 402 DGVLKMWRVTRPKSSCGH 419 (434)
Q Consensus 402 Dg~v~iw~~~~~~~~~~~ 419 (434)
|.+|.|||+.++.+....
T Consensus 468 ddtILiWdFl~~~~~~~~ 485 (499)
T KOG0281|consen 468 DDTILIWDFLNGPPSAAE 485 (499)
T ss_pred CCeEEEEEcCCCCccccc
Confidence 999999999988665433
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-39 Score=252.60 Aligned_cols=286 Identities=19% Similarity=0.340 Sum_probs=248.0
Q ss_pred CCCccCCCCCCCccc-----ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEE
Q 046226 66 NPTAAAGSSSPETSS-----SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVV 136 (434)
Q Consensus 66 ~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~ 136 (434)
++..++++++|.+++ ++.|.+++...++.|..+.. ++..||+++. ..||+||+.+.. ++.++.+|.+.|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 466788999998866 45678999988999999999 8888888875 689999998754 5888999999999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec
Q 046226 137 AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL 214 (434)
Q Consensus 137 ~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 214 (434)
++.|..+ .+++|+.||+++|||++.....+.+ .|..+|+++..+|+...|++|..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-----------------------~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-----------------------QHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhc-----------------------cCCCCcceEEecCCcceEEeecC
Confidence 9999887 8999999999999999875554444 58899999999999999999999
Q ss_pred CCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEe
Q 046226 215 DKTIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT 292 (434)
Q Consensus 215 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 292 (434)
+|.|++||+....+...+- .....|.++.+.||| +++.+...|...+|++-.........++..++.|.+.+..+.++
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 9999999998876655543 345689999999999 99999999999999987655555667778899999999999999
Q ss_pred cCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226 293 LDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVG 370 (434)
Q Consensus 293 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (434)
|++++|++++.|.+++||+.+.. ++....+.+|...++..+|+ +.||++|+.|+.+++|++..+ +.++.+.+
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~---k~v~qy~g 298 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG---KEVRQYQG 298 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC---ceeeecCC
Confidence 99999999999999999998755 34445778999999999886 679999999999999999998 78899999
Q ss_pred cccceeEEEEe
Q 046226 371 HRGPIRCAIAF 381 (434)
Q Consensus 371 h~~~v~~~~~~ 381 (434)
|.....|++..
T Consensus 299 h~K~~vc~~ln 309 (311)
T KOG0315|consen 299 HHKAAVCVALN 309 (311)
T ss_pred cccccEEEEee
Confidence 99988887754
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=251.48 Aligned_cols=291 Identities=18% Similarity=0.276 Sum_probs=241.7
Q ss_pred eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC---ceeEeec-cCCCccEEEEEEeCC--EEEEEEcCC
Q 046226 82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE---FTECGRL-KAKTSMVVAMEVSHD--RVYAAYGDG 152 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~l~~~~~--~l~~~s~dg 152 (434)
...++.+.+|.++|..++| .|..||+|+.|+.||||+... ..+...+ .+|+..|.+++|+|. +|++|+.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467788999999999999 256999999999999999874 4444444 469999999999986 899999999
Q ss_pred eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeE
Q 046226 153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCI 229 (434)
Q Consensus 153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~ 229 (434)
++.||.-..++-.. . ..+.+|...|.|++|+++|++||+++.|..|-||.+..+ +++
T Consensus 84 t~~Iw~k~~~efec-v-------------------~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 84 TVVIWKKEDGEFEC-V-------------------ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred eEEEeecCCCceeE-E-------------------eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence 99999754322111 1 122389999999999999999999999999999999743 688
Q ss_pred EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226 230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH 308 (434)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 308 (434)
..++.|...|..+.|+|.. +|++++.|.+|++|+-. .........++.+|...|.+++|++.|..|++++.|++++
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~---~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE---DDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeec---CCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 8999999999999999987 99999999999999754 2456778889999999999999999999999999999999
Q ss_pred EEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC---CceeeEE-EeeccccceeEEEEeecc
Q 046226 309 YWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD---GRHTMLA-VLVGHRGPIRCAIAFLGR 384 (434)
Q Consensus 309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~h~~~v~~~~~~~~~ 384 (434)
||.+.. .....|...+..++|....|++++.|+.|++|..... ..+..+. .-..|...|+++.|.|..
T Consensus 221 Iw~~~~--------~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 221 IWRLYT--------DLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eeeecc--------CcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 997531 1122577889999999779999999999999987653 1222222 445789999999999953
Q ss_pred cCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 385 FGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 385 ~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
..+|++|+.||.|++|.+.
T Consensus 293 --------~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 --------SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------CCceeecCCCceEEEEEec
Confidence 6799999999999999975
No 14
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-40 Score=270.23 Aligned_cols=288 Identities=21% Similarity=0.310 Sum_probs=255.5
Q ss_pred ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226 79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI 154 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i 154 (434)
+......+.+.+|..+|+.+-| +-.++++++.|++|++||..+++....+++|...|.+++|+.. ++++++.|-.+
T Consensus 95 ipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~ 174 (406)
T KOG0295|consen 95 IPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSA 174 (406)
T ss_pred CCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccch
Confidence 4555667778899999999999 6678888999999999999999999999999999999999875 89999999999
Q ss_pred EEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226 155 RVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 155 ~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 233 (434)
++||..+. ++++.. .+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.
T Consensus 175 ~LWd~~~~~~c~ks~----------------------~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~ 232 (406)
T KOG0295|consen 175 KLWDFDTFFRCIKSL----------------------IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP 232 (406)
T ss_pred hheeHHHHHHHHHHh----------------------cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc
Confidence 99998753 222222 2799999999999999999999999999999999999999999
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC---------------CCE
Q 046226 234 AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD---------------DGL 297 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~ 297 (434)
+|...|..+..+.|| .+++++.|.+|++|-+. .......+..|+.+|.+++|.|. +++
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~------t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~ 306 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA------TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV 306 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEec------cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence 999999999999999 99999999999999765 34445667789999999999762 258
Q ss_pred EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccce
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPI 375 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 375 (434)
+.+++.|++|++||+.+.... .++.+|...|..++|+ |+||+++.+|+++++||+++. ++...+..|..-|
T Consensus 307 l~s~SrDktIk~wdv~tg~cL----~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCL----FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFV 379 (406)
T ss_pred EEeecccceEEEEeccCCeEE----EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCccee
Confidence 999999999999999765433 4677999999999998 889999999999999999998 8999999999999
Q ss_pred eEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226 376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
++++|..+ ..+++||+-|.++++|.-
T Consensus 380 t~lDfh~~---------~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHKT---------APYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCCC---------CceEEeccccceeeeeec
Confidence 99999988 679999999999999974
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=290.51 Aligned_cols=354 Identities=20% Similarity=0.351 Sum_probs=282.9
Q ss_pred CCCCccc-ccCCCCCCCCCCCCCccCCCCCCCcccce-----eeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEE
Q 046226 47 FSSPISL-HTSPLSSPRHPFNPTAAAGSSSPETSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRI 116 (434)
Q Consensus 47 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~i 116 (434)
..+.... |..|+....+.+.+..+++++.+..++.| .|.+.|+||.|.|.++.| .-.+|++|..|+++++
T Consensus 96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence 3344444 88888888888889999999999776655 568999999999999999 3457899999999999
Q ss_pred ecCCCcee-EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee-------ccC-----------
Q 046226 117 WKQPEFTE-CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT-------IPK----------- 175 (434)
Q Consensus 117 wd~~~~~~-~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~-------~~~----------- 175 (434)
||+.+... +..+..|.+.|++++|.++ .+++++.|..+.+||+...+..+...+.. ..+
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 99986554 7788899999999999997 78999999999999985443322221100 000
Q ss_pred -------------C-----------CC-----------------------------------------------------
Q 046226 176 -------------T-----------GG----------------------------------------------------- 178 (434)
Q Consensus 176 -------------~-----------~~----------------------------------------------------- 178 (434)
. ..
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence 0 00
Q ss_pred -----------ceeEEEe---ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC----eeEEEcccCccCeE
Q 046226 179 -----------AVRNLIV---GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS----KCIETIQAHSEPIN 240 (434)
Q Consensus 179 -----------~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~ 240 (434)
.++.... ....+.+|...|.+++...+|.+|++|+.|.++++|.++.+ -++....+|.+.|.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 0000000 00024579999999996667889999999999999987443 35666778999999
Q ss_pred EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEE----EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLIL----TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
+++++..+ +|++++.|+++++|++........ .... ....|...|++++++|+..++++|+.|.+.+||++.
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le- 493 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE- 493 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-
Confidence 99998777 999999999999999983111111 2222 456789999999999999999999999999999986
Q ss_pred ccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCc
Q 046226 315 FSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDE 392 (434)
Q Consensus 315 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 392 (434)
.......+.+|...|+|+.|+.. .+++++.|++|+||.+.+. .++.++.||...|..+.|..+
T Consensus 494 ---~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~--------- 558 (775)
T KOG0319|consen 494 ---QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRN--------- 558 (775)
T ss_pred ---CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeC---------
Confidence 55666788999999999999865 9999999999999999987 899999999999999999988
Q ss_pred ccEEEEeecCCeEEEEecCCCCccc
Q 046226 393 YCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 393 ~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
+..|+|++.||-|++|++++....+
T Consensus 559 ~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 559 GKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred CcEEEeccCCCcEEEEeccchhhhh
Confidence 9999999999999999999887543
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.9e-40 Score=275.72 Aligned_cols=279 Identities=21% Similarity=0.287 Sum_probs=242.1
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCce
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVK 166 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~ 166 (434)
-...|..+.| +|+.|++|+..|.+.+|+.........++.|..+|.++.|+.+ .+++|..+|.|++|+........
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 3457899999 8999999999999999998766655667899999999999987 89999999999999876432211
Q ss_pred eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD 246 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 246 (434)
.. ..|...|++++|+|+...|+++++||+|+|||....+....+.+|.-.|.+++|+|
T Consensus 175 ~~----------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 175 IQ----------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP 232 (464)
T ss_pred hh----------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC
Confidence 11 13558999999999999999999999999999999988889999999999999999
Q ss_pred CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc
Q 046226 247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL 325 (434)
Q Consensus 247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 325 (434)
.. ++++++.|..|++||.+ ....+.++..|...|..+.|++++++|++++.|..+++||++..+. ...+
T Consensus 233 ~kgLiasgskDnlVKlWDpr------Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE----l~~~ 302 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPR------SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE----LFTY 302 (464)
T ss_pred ccceeEEccCCceeEeecCC------CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH----HHHh
Confidence 88 99999999999999988 6667788899999999999999999999999999999999974333 3456
Q ss_pred cCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC
Q 046226 326 QGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD 402 (434)
Q Consensus 326 ~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D 402 (434)
++|...|+++.|+ .++|.+|+.||.|..|.+.... .....-.+|...|++++|+|- |.+|++|+.|
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPl---------Ghil~tgsnd 371 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPL---------GHILATGSND 371 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeecccc---------ceeEeecCCC
Confidence 7999999999986 5799999999999999998431 233334589999999999999 9999999999
Q ss_pred CeEEEEecCC
Q 046226 403 GVLKMWRVTR 412 (434)
Q Consensus 403 g~v~iw~~~~ 412 (434)
.++++|.-..
T Consensus 372 ~t~rfw~r~r 381 (464)
T KOG0284|consen 372 RTVRFWTRNR 381 (464)
T ss_pred cceeeeccCC
Confidence 9999998654
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9e-39 Score=256.81 Aligned_cols=285 Identities=21% Similarity=0.315 Sum_probs=245.4
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC-CCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ-PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS 159 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~ 159 (434)
+-.+.+|.+.|+++.| +|.+||+|+.|..|.+|++ ...+....+++|.++|..+.|..+ .+++++.|.+++.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3446789999999999 9999999999999999995 445566778899999999999987 8999999999999999
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAHSEP 238 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 238 (434)
++++.++..+ +|..-|+.+.-..-|. ++.+++.||++++||+++...++++. ....
T Consensus 120 ~tG~~~rk~k----------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 120 ETGKRIRKHK----------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ 176 (338)
T ss_pred ccceeeehhc----------------------cccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-ccee
Confidence 9998887775 6999999988554444 56688999999999999988888775 4668
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
++++.|..++ .+++|+-|+.|++||++ .......+.+|..+|+.+..+++|.++.+-+.|.++++||++....
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r------~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLR------KNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred EEEEEecccccceeeccccCceeeeccc------cCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 9999999888 99999999999999998 4556778899999999999999999999999999999999987766
Q ss_pred cccccCcccCccc----ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226 318 QLQYGGALQGHTH----AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED 391 (434)
Q Consensus 318 ~~~~~~~~~~~~~----~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 391 (434)
.......+.+|.. .....+|+ ++.+.+|+.|..+++||.... ..+..+.||.+.|.+++|+|.
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~-------- 319 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPT-------- 319 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCC--------
Confidence 6555555555543 22444554 669999999999999999886 789999999999999999999
Q ss_pred cccEEEEeecCCeEEEEec
Q 046226 392 EYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 392 ~~~~l~s~~~Dg~v~iw~~ 410 (434)
..+|.+++.|.+|++=++
T Consensus 320 -e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 320 -EPIILSCSSDKTIYLGEI 337 (338)
T ss_pred -CcEEEEeccCceeEeecc
Confidence 899999999999987443
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-38 Score=260.02 Aligned_cols=318 Identities=15% Similarity=0.139 Sum_probs=264.9
Q ss_pred CCcccccCCCCCCCCCCCCCccCCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC
Q 046226 49 SPISLHTSPLSSPRHPFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE 121 (434)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~ 121 (434)
..+..|+.++++....|+...+++++.|.. +.+......+.+|++.|+|+.| +|.+||||+-+|.|+||+..+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 457789999999988888889999887754 5555667889999999999999 999999999999999999999
Q ss_pred ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226 122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS 199 (434)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (434)
+.....+...-..+.-+.|+|. .|++|+.||.+.+|.+.++...+.+ .+|..++++
T Consensus 138 g~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~----------------------~Gh~~~ct~ 195 (399)
T KOG0296|consen 138 GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM----------------------SGHNSPCTC 195 (399)
T ss_pred CceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe----------------------cCCCCCccc
Confidence 9988888766778899999996 7889999999999999876444443 379999999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226 200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL 277 (434)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 277 (434)
=.|.|+|+.++++..||+|++||+.+++++..+... .....++.++..+ .++.|..++.+++-+.. ..+.+.
T Consensus 196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~------sgKVv~ 269 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG------SGKVVN 269 (399)
T ss_pred ccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc------cceEEE
Confidence 999999999999999999999999999998888742 3456788888888 88888888888887543 222222
Q ss_pred Eec--------ccccCeEEE---EEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC-CEEEEe
Q 046226 278 TLT--------AKYSPVKTL---TLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-NYVISG 345 (434)
Q Consensus 278 ~~~--------~~~~~v~~~---~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~ 345 (434)
... .+...+.++ .++..-.+.++|+.||+|.|||+........ -.|...|+.+.|.+ .+|+++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-----c~he~~V~~l~w~~t~~l~t~ 344 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-----CEHEDGVTKLKWLNTDYLLTA 344 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-----ccCCCceEEEEEcCcchheee
Confidence 222 233344444 4454567889999999999999864433322 26778899999987 699999
Q ss_pred cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+.||.|+.||.+++ +++..+.||...|.+++++|+ .++++|+|.|++.+|+++.
T Consensus 345 c~~g~v~~wDaRtG---~l~~~y~GH~~~Il~f~ls~~---------~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 345 CANGKVRQWDARTG---QLKFTYTGHQMGILDFALSPQ---------KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccCceEEeeecccc---ceEEEEecCchheeEEEEcCC---------CcEEEEecCCCeEEEEecC
Confidence 99999999999999 899999999999999999999 8999999999999999875
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-38 Score=269.43 Aligned_cols=290 Identities=22% Similarity=0.342 Sum_probs=246.3
Q ss_pred eeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc----eeEeecc----------CCCccEEEEEEeCC--
Q 046226 83 RCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF----TECGRLK----------AKTSMVVAMEVSHD-- 143 (434)
Q Consensus 83 ~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~----------~~~~~v~~l~~~~~-- 143 (434)
.....+..|..+|.+++| ...+|++|+.|-+.++|++... .....++ .....|++++|+.+
T Consensus 169 ~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 169 SSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred ccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 334455669999999999 4568999999999999998641 1111111 12357999999965
Q ss_pred EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI 223 (434)
Q Consensus 144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 223 (434)
.|++|+.||.+++|+.... .+..+ ..|.++|.++.|+..|.+|++++.|+++.+||.
T Consensus 249 ~LatG~~~G~~riw~~~G~-l~~tl----------------------~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNKDGN-LISTL----------------------GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred eEEEeecCcEEEEEecCch-hhhhh----------------------hccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 9999999999999996532 22222 259999999999999999999999999999999
Q ss_pred CCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC
Q 046226 224 RDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT 303 (434)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 303 (434)
.++...+.+..|..+-..+.|-.+..+++++.|+.|+++.+. ...+..++.+|.+.|.++.|.|.+.+|++++.
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecC
Confidence 999999999989888788999988899999999999999887 45567778889999999999999999999999
Q ss_pred CCeEEEEEcCcccccccccCcccCcccceEEEEee-----------CCEEEEecCCCcEEEEeccCCCceeeEEEeeccc
Q 046226 304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-----------ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR 372 (434)
Q Consensus 304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 372 (434)
|++++||.+. .......+.+|...|..+.|+ +..+++++.|++|++||+..+ .++..|..|.
T Consensus 380 D~TlkiWs~~----~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~ 452 (524)
T KOG0273|consen 380 DGTLKIWSMG----QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQ 452 (524)
T ss_pred CCeeEeeecC----CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCC
Confidence 9999999964 233345677999999888875 338999999999999999998 8999999999
Q ss_pred cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
.+|.+++|+|+ |+++|+|+.||.|.||+.+.++...
T Consensus 453 ~pVysvafS~~---------g~ylAsGs~dg~V~iws~~~~~l~~ 488 (524)
T KOG0273|consen 453 EPVYSVAFSPN---------GRYLASGSLDGCVHIWSTKTGKLVK 488 (524)
T ss_pred CceEEEEecCC---------CcEEEecCCCCeeEeccccchheeE
Confidence 99999999999 9999999999999999999988643
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.7e-38 Score=265.56 Aligned_cols=315 Identities=18% Similarity=0.259 Sum_probs=265.4
Q ss_pred CCcccccCCCCCCCCCCCCC-ccCCCCCCCcccceeeeE------E---Ee------ec----cccEEEEEE--cCCEEE
Q 046226 49 SPISLHTSPLSSPRHPFNPT-AAAGSSSPETSSSYRCIS------S---VL------KK----DGQILCIAV--GNGFIY 106 (434)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~---~~------~h----~~~v~~~~~--~~~~l~ 106 (434)
+.++ |.+++......|-.. .++.++.+-+.+.|+... . |+ ++ +..|++++| +|++||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3344 888888888877776 677777777777777653 1 10 11 357999999 799999
Q ss_pred EEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEE
Q 046226 107 TGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLI 184 (434)
Q Consensus 107 tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
+|+.||.++||+. ++.++.++..|.++|.++.|+.. +|++++.|+++.+||..++.....+.+
T Consensus 252 tG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~-------------- 316 (524)
T KOG0273|consen 252 TGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF-------------- 316 (524)
T ss_pred EeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee--------------
Confidence 9999999999995 67888899999999999999986 899999999999999987766655542
Q ss_pred eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226 185 VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR 263 (434)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd 263 (434)
|..+-.++.|- +...|++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.+ +|++++.|++++||.
T Consensus 317 --------~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 317 --------HSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred --------ccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 77776788885 45678999999999999999999999999999999999999999 999999999999998
Q ss_pred cccccCcceeEEEEEecccccCeEEEEEecCC---------CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226 264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---------GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC 334 (434)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 334 (434)
+. .......+..|...|..+.|+|.| ..+++++.|++|++||+... .....+..|..+|.+
T Consensus 388 ~~------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 388 MG------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPVYS 457 (524)
T ss_pred cC------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCceEE
Confidence 66 344556778899999999999964 47999999999999998643 344567789999999
Q ss_pred EEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 335 LASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 335 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
++|+ |+++++|+.||.|.+|+++++ +.++.+.+ .+.|..++|+.+ |..|..+-.||.+.+-|+.
T Consensus 458 vafS~~g~ylAsGs~dg~V~iws~~~~---~l~~s~~~-~~~Ifel~Wn~~---------G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDGCVHIWSTKTG---KLVKSYQG-TGGIFELCWNAA---------GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCcEEEecCCCCeeEeccccch---heeEeecC-CCeEEEEEEcCC---------CCEEEEEecCCCceEEEec
Confidence 9997 779999999999999999998 67777665 556999999988 8999999999999998875
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-38 Score=249.21 Aligned_cols=279 Identities=18% Similarity=0.242 Sum_probs=223.1
Q ss_pred CcccccCCCCCCCCCC-CCCccCCCCCCCcccc----------eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEE
Q 046226 50 PISLHTSPLSSPRHPF-NPTAAAGSSSPETSSS----------YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRI 116 (434)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~i 116 (434)
.+.+|...+.+..-.. ++..+.+++.|.++-. +..++.+.||+..|..+.. +|++.++++.|+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 4556666665544333 3556666666665444 4447889999999999998 9999999999999999
Q ss_pred ecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcC
Q 046226 117 WKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHM 194 (434)
Q Consensus 117 wd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (434)
||+.+++....+.+|...|.+++|++| .+++|+.|.+|++|++.......... ..+.
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~---------------------~~~~ 148 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE---------------------DSHR 148 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec---------------------CCCc
Confidence 999999999999999999999999997 99999999999999986443222221 1247
Q ss_pred CCeEEEEEecC--CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226 195 GPITSIAINVS--DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ 271 (434)
Q Consensus 195 ~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 271 (434)
+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.++++||| ++++|+.||.+.+||++
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~------ 222 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN------ 222 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEcc------
Confidence 89999999998 7899999999999999999999999999999999999999999 99999999999999998
Q ss_pred eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-----ccceEEEEee--CCEEEE
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-----THAVMCLASV--ANYVIS 344 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~~--~~~l~s 344 (434)
..+... ...+...|.+++|+|+.-.|+.+. +..|+|||+........+.....+. ......++|+ |..|++
T Consensus 223 ~~k~ly-sl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 223 EGKNLY-SLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred CCceeE-eccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 222233 345778999999999866666555 4559999998765544443333332 2233556676 889999
Q ss_pred ecCCCcEEEEecc
Q 046226 345 GSADSTSRVWARE 357 (434)
Q Consensus 345 ~~~dg~i~iwd~~ 357 (434)
|-.|+.|++|.+.
T Consensus 301 g~td~~irv~qv~ 313 (315)
T KOG0279|consen 301 GYTDNVIRVWQVA 313 (315)
T ss_pred eecCCcEEEEEee
Confidence 9999999999875
No 22
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-38 Score=265.46 Aligned_cols=288 Identities=18% Similarity=0.268 Sum_probs=237.7
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI 154 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i 154 (434)
.+..+.+..|++.|+-+.| +|++||+++.|.+..+|++.. .+...++.+|..+|..+.|+|| +|++|+.|..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 3445667889999999999 899999999999999998644 4557888999999999999998 89999999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 234 (434)
.+||+.++.....+.. ++...+.+++|.|||..+++|+.|+.|..||++ |..+..+++
T Consensus 294 ~lwDv~tgd~~~~y~~---------------------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~g 351 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPS---------------------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEG 351 (519)
T ss_pred eeccCCcchhhhhccc---------------------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccc
Confidence 9999998877666531 356789999999999999999999999999986 454555554
Q ss_pred C-ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 235 H-SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 235 ~-~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
- ...|.++++.+|| .+++.+.|..|++++..... ...+.....+|++++++.+++++++.-.+..|++||+
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~-------dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl 424 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV-------DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDL 424 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhh-------hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeec
Confidence 3 3569999999999 88888899999999876211 1113334578999999999999999999999999999
Q ss_pred CcccccccccCcccCcccce----EEEEe-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCC
Q 046226 313 GWFSAQLQYGGALQGHTHAV----MCLAS-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGE 387 (434)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~v----~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 387 (434)
.......+ +.||...- .|+.- +..++++|++|+.|+||+..++ +++.++.||...|++++|+|..
T Consensus 425 ~e~~lv~k----Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~--- 494 (519)
T KOG0293|consen 425 EENKLVRK----YFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPAD--- 494 (519)
T ss_pred chhhHHHH----hhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCC---
Confidence 74444333 44554322 23332 2359999999999999999998 8999999999999999999986
Q ss_pred CCCCcccEEEEeecCCeEEEEecCCC
Q 046226 388 ETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 388 ~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
..++|+||.||+||||.....
T Consensus 495 -----p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 495 -----PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred -----HHHhhccCCCCeEEEecCCcc
Confidence 789999999999999987643
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-39 Score=276.84 Aligned_cols=288 Identities=17% Similarity=0.270 Sum_probs=246.3
Q ss_pred eeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEE
Q 046226 82 YRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIR 155 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~ 155 (434)
.+.+.++.+|...|+++.| .+.+|++|+.|+.|+||++-+ +.++.++.+|..+|.+++|+++ .+++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 3447889999999999999 789999999999999999876 8999999999999999999987 899999999999
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 234 (434)
+||+++++....+. -...+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.+..
T Consensus 284 lwDtETG~~~~~f~-----------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-----------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred eeccccceEEEEEe-----------------------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 99999998887773 45578999999998 8899999999999999999999999999
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 235 HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
|-+.|..+.|-+++ ++++.+.|+.++||+.+. ....+.+ .....-...++..+|++.++++-+.|..|.+|.+.
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~---~v~ik~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRI---PVPIKNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCC---Cccchhh--cchhhccCcceecCCCCCeehhhccCceEEEEecc
Confidence 99999999999999 999999999999999771 1111122 22223356688999999999999999999999864
Q ss_pred cccccccccCcccCcccceE----EEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226 314 WFSAQLQYGGALQGHTHAVM----CLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET 389 (434)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 389 (434)
.. -.......+.+|...=. .++++|++|++|+.||.+.+||.++- +.+..+++|.+++..+.|+|..
T Consensus 416 ~~-~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~lkah~~~ci~v~wHP~e----- 486 (503)
T KOG0282|consen 416 PP-FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSKLKAHDQPCIGVDWHPVE----- 486 (503)
T ss_pred cc-cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh---hhhhccccCCcceEEEEecCCC-----
Confidence 32 22233356678864432 23446889999999999999999987 7888999999999999999985
Q ss_pred CCcccEEEEeecCCeEEEEe
Q 046226 390 EDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 390 ~~~~~~l~s~~~Dg~v~iw~ 409 (434)
...+||+|.||.|++|+
T Consensus 487 ---~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 ---PSKVATCGWDGLIKIWD 503 (503)
T ss_pred ---cceeEecccCceeEecC
Confidence 67899999999999996
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-37 Score=240.26 Aligned_cols=279 Identities=16% Similarity=0.244 Sum_probs=235.5
Q ss_pred eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226 84 CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS 159 (434)
Q Consensus 84 ~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~ 159 (434)
..+.+..|.++|.++.| +|++.+|++.|.+|++||...+.+++++.+|...|..++.+.| .+++|+.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34567889999999999 9999999999999999999999999999999999999998776 8999999999999999
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC--CeeEEEcccCcc
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD--SKCIETIQAHSE 237 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~ 237 (434)
.+++..+.+. +|.+.|+.++|+.+...+++|+.|..+++||.++ .++++.+....+
T Consensus 89 ~TGkv~Rr~r----------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 89 NTGKVDRRFR----------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccCeeeeecc----------------------cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 9998887774 7999999999999999999999999999999975 478899988899
Q ss_pred CeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 238 PINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 238 ~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
.|.++.+. +..+++|+.||++|.||++ .......+ ...+|++++|+++++..++++.|+++++.|-.
T Consensus 147 ~V~Si~v~-~heIvaGS~DGtvRtydiR------~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~---- 213 (307)
T KOG0316|consen 147 GVSSIDVA-EHEIVAGSVDGTVRTYDIR------KGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKE---- 213 (307)
T ss_pred ceeEEEec-ccEEEeeccCCcEEEEEee------cceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccc----
Confidence 99999987 3389999999999999998 23332222 34589999999999999999999999999954
Q ss_pred cccccCcccCcccceEEEE----eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc-eeEEEEeecccCCCCCCc
Q 046226 318 QLQYGGALQGHTHAVMCLA----SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP-IRCAIAFLGRFGEETEDE 392 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~ 392 (434)
..++.+...+|...-..+. -+..++++|++||.|++||+.+. ..+..+..|... |.++.++|.
T Consensus 214 tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~--------- 281 (307)
T KOG0316|consen 214 TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPT--------- 281 (307)
T ss_pred hhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccC---------
Confidence 4445556677876543332 34569999999999999999987 777888888887 889999998
Q ss_pred ccEEEEeecCCeEEEEec
Q 046226 393 YCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 393 ~~~l~s~~~Dg~v~iw~~ 410 (434)
..-++++. ++.+.+|.-
T Consensus 282 ~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 282 MDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred ccceeEec-CCceeceee
Confidence 44455554 345666653
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.8e-39 Score=264.73 Aligned_cols=266 Identities=21% Similarity=0.344 Sum_probs=232.5
Q ss_pred CCCCCccCCCCCCCccccee-----eeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE
Q 046226 64 PFNPTAAAGSSSPETSSSYR-----CISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM 138 (434)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 138 (434)
.++...+.++..|.+++.|. |+..+.||+|.|.|+.|+.+.+++|+.|.+|+|||+++++++.++-+|...|..+
T Consensus 204 QYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 204 QYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred EecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 45677788888888877664 5788999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226 139 EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI 218 (434)
Q Consensus 139 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 218 (434)
.|+.+++++++.|.++.+||+.....+.... .+.+|...|+.+.|+ .+++++++.|.+|
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rr-------------------VLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRR-------------------VLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCchHHHHHH-------------------HHhhhhhheeeeccc--cceEEEecCCceE
Confidence 9999999999999999999998665433222 234899999999995 6799999999999
Q ss_pred EEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226 219 KVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL 298 (434)
Q Consensus 219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 298 (434)
++|++.++++++++.+|...|.|+.+. +.++++|+.|.+|++||+. .......+.+|+.-|.++.|. .+.+
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~------~G~cLRvLeGHEeLvRciRFd--~krI 413 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE------CGACLRVLEGHEELVRCIRFD--NKRI 413 (499)
T ss_pred EEEeccceeeehhhhcccccceehhcc-CeEEEecCCCceEEEEecc------ccHHHHHHhchHHhhhheeec--Ccee
Confidence 999999999999999999999999875 3399999999999999987 566777889999999999995 5899
Q ss_pred EEEcCCCeEEEEEcCccccccc-----ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQ-----YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 359 (434)
++|..||+|++||+........ ....+..|.+.|..+.|+...+++++.|.+|.|||..++
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999999999875543321 223456789999999999999999999999999999876
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.5e-36 Score=264.42 Aligned_cols=280 Identities=27% Similarity=0.462 Sum_probs=240.8
Q ss_pred EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226 86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~ 161 (434)
.++.+|.++|++++| ++++|++++.||.|++|++.+++....+..|...+..+.|.++ .+++++.||.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 457789999999999 7799999999999999999998888888899999999999987 789999999999999986
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 241 (434)
.+....+. .|...+.++.|++++.++++++.||.|.+||+.+++....+..|...+.+
T Consensus 83 ~~~~~~~~----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 83 GECVRTLT----------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred ccceEEEe----------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 54444332 48889999999999888888888999999999999999999889999999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226 242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ 320 (434)
Q Consensus 242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 320 (434)
+.++|++ ++++++.|+.|++||++ .......+..+...+.++.|+|+++.+++++.|+.|++||++....
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--- 211 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLR------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC--- 211 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEcc------ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce---
Confidence 9999988 77777779999999987 2333444557778999999999999999999999999999865322
Q ss_pred ccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226 321 YGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT 398 (434)
Q Consensus 321 ~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 398 (434)
...+..|...+.++.+++ .++++++.||.|++||+.++ .....+..|...|.+++|+|+ +.+|++
T Consensus 212 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~---------~~~l~~ 278 (289)
T cd00200 212 -LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPD---------GKRLAS 278 (289)
T ss_pred -ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCC---------CCEEEE
Confidence 234446777899999875 57777777999999999876 677777899999999999998 889999
Q ss_pred eecCCeEEEEe
Q 046226 399 GSLDGVLKMWR 409 (434)
Q Consensus 399 ~~~Dg~v~iw~ 409 (434)
++.||.|++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.8e-38 Score=283.60 Aligned_cols=282 Identities=18% Similarity=0.352 Sum_probs=234.3
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeec
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRS 159 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~ 159 (434)
--|..++..-...++|..| ++.+||.|..|..|++|.+...+ +..++... .+. .+=+.+.|-.+.+.|-
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~-~l~-------~~d~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS-DLS-------NIDTESADVDVDMLDD 438 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh-hhc-------cccccccchhhhhccc
Confidence 3466777777778999999 78899999999999999987543 23333211 111 1123344444555554
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI 239 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 239 (434)
......+.+ .+|.++|..+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|
T Consensus 439 ~~~~~~~~L----------------------~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PV 496 (707)
T KOG0263|consen 439 DSSGTSRTL----------------------YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPV 496 (707)
T ss_pred cCCceeEEe----------------------ecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcce
Confidence 433222222 3799999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226 240 NALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ 318 (434)
Q Consensus 240 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 318 (434)
.++.|+|.| ++++++.|++-++|... ...+...+.+|.+.|.|+.|+|+..++++|+.|.+|++||+.+...
T Consensus 497 wdV~F~P~GyYFatas~D~tArLWs~d------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~- 569 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATASHDQTARLWSTD------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS- 569 (707)
T ss_pred eeEEecCCceEEEecCCCceeeeeecc------cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE-
Confidence 999999999 99999999999999876 3556778889999999999999999999999999999999875543
Q ss_pred ccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226 319 LQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI 396 (434)
Q Consensus 319 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 396 (434)
...+.||.++|.+++++ |.+|++|+.||.|.+||+.++ ..+..+.+|.+.|.++.|+.+ |..|
T Consensus 570 ---VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~~Ht~ti~SlsFS~d---------g~vL 634 (707)
T KOG0263|consen 570 ---VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SLVKQLKGHTGTIYSLSFSRD---------GNVL 634 (707)
T ss_pred ---EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC---cchhhhhcccCceeEEEEecC---------CCEE
Confidence 34567999999999886 789999999999999999998 888999999999999999999 9999
Q ss_pred EEeecCCeEEEEecCCCCcc
Q 046226 397 CTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 397 ~s~~~Dg~v~iw~~~~~~~~ 416 (434)
|+||.|.+|++||+......
T Consensus 635 asgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred EecCCCCeEEEEEchhhccc
Confidence 99999999999999865543
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=266.48 Aligned_cols=339 Identities=20% Similarity=0.314 Sum_probs=264.1
Q ss_pred cCCCCCCCCCCCCCccCCCCCC--------C----cccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226 55 TSPLSSPRHPFNPTAAAGSSSP--------E----TSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP 120 (434)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~ 120 (434)
+.++.+..++|+++.++.+... + ....|...+++.+|...|+++.| |.++|++|+.|-+++||++.
T Consensus 96 k~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~ 175 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVD 175 (893)
T ss_pred cCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEec
Confidence 4667778888998877765432 1 24567778899999999999999 89999999999999999988
Q ss_pred Ccee--EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC------------------------CCceee---E
Q 046226 121 EFTE--CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD------------------------NGVKHV---K 169 (434)
Q Consensus 121 ~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~------------------------~~~~~~---~ 169 (434)
..+. ...+.+|...|.+.-|..+ .+++.+.||.+.+|..... +..... +
T Consensus 176 ~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k 255 (893)
T KOG0291|consen 176 GNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK 255 (893)
T ss_pred cccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence 7665 6678899999999999877 8999999999999987611 000000 0
Q ss_pred --eeeccCCCCcee---------EEEec-----------cc-----cccCcCCCeEEEEEecCCCEEEEEecC-CcEEEE
Q 046226 170 --LATIPKTGGAVR---------NLIVG-----------KD-----KMMKHMGPITSIAINVSDDTLYSASLD-KTIKVW 221 (434)
Q Consensus 170 --~~~~~~~~~~~~---------~~~~~-----------~~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vw 221 (434)
...+......+. .+..+ ++ .+.-...+|..++|+..|.+|+.|+.. |.+.||
T Consensus 256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVw 335 (893)
T KOG0291|consen 256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVW 335 (893)
T ss_pred EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEE
Confidence 000000000000 00000 00 001133578888898889999988754 799999
Q ss_pred EcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE
Q 046226 222 RIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG 300 (434)
Q Consensus 222 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 300 (434)
+..+...+...++|...+++++++||| ++++|+.||.|+|||.. ..-...++..|...|+.+.|+..|+.+++
T Consensus 336 eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~------SgfC~vTFteHts~Vt~v~f~~~g~~lls 409 (893)
T KOG0291|consen 336 EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ------SGFCFVTFTEHTSGVTAVQFTARGNVLLS 409 (893)
T ss_pred EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc------CceEEEEeccCCCceEEEEEEecCCEEEE
Confidence 999988888999999999999999999 99999999999999976 55577889999999999999999999999
Q ss_pred EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC-cEEEEeccCCCceeeEEEeeccccceeE
Q 046226 301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS-TSRVWAREQDGRHTMLAVLVGHRGPIRC 377 (434)
Q Consensus 301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 377 (434)
.+.||+|+.||+.....-..+.. .......|++.+ |..+++|+.|. .|.+|++++| +.+..+.||.++|.+
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~---P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTS---PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSG 483 (893)
T ss_pred eecCCeEEeeeecccceeeeecC---CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCccee
Confidence 99999999999865443332211 111233556655 88999999887 6999999999 899999999999999
Q ss_pred EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
++|+|. +..|+|+|.|.+||+|++-...
T Consensus 484 l~f~~~---------~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 484 LSFSPD---------GSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred eEEccc---------cCeEEeccccceEEEEEeeccC
Confidence 999999 8999999999999999987653
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=280.87 Aligned_cols=291 Identities=25% Similarity=0.430 Sum_probs=243.3
Q ss_pred ccceeeeEEEeec-cccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226 79 SSSYRCISSVLKK-DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGD 151 (434)
Q Consensus 79 ~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~d 151 (434)
...+.....+.+| ...|.|+.| +|+.|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+ .+++++.|
T Consensus 145 ~~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 145 SRVFSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred cccceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC
Confidence 3445555566565 789999999 99999999999999999997777 77778899999999999998 89999999
Q ss_pred CeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226 152 GKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE 230 (434)
Q Consensus 152 g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 230 (434)
++|++||+... ..++.+ .+|...|++++|+|+++++++|+.|++|++||+++++++.
T Consensus 225 ~tiriwd~~~~~~~~~~l----------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTL----------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred ceEEEeeccCCCeEEEEe----------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE
Confidence 99999999433 334444 2799999999999999999999999999999999999999
Q ss_pred EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc--CeEEEEEecCCCEEEEEcCCCeE
Q 046226 231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS--PVKTLTLTLDDGLLYGGCTDGYI 307 (434)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i 307 (434)
.+.+|.+.|.+++|++++ .|++++.|+.|++||+..... . ....+..+.. +++++.|+|++.++++++.|+.+
T Consensus 283 ~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~--~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 283 KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK--L--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL 358 (456)
T ss_pred eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce--e--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence 999999999999999999 999999999999999882111 1 2333344433 59999999999999999999999
Q ss_pred EEEEcCcccccccccCcccCcccceEEE---E--eeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc-ccceeEEEEe
Q 046226 308 HYWHKGWFSAQLQYGGALQGHTHAVMCL---A--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH-RGPIRCAIAF 381 (434)
Q Consensus 308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~---~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~ 381 (434)
++||++....... ..+|...+.|+ . ..+.++++|+.|+.|++||+.++ ..+..+.+| ...+..+.++
T Consensus 359 ~~w~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~ 431 (456)
T KOG0266|consen 359 KLWDLRSGKSVGT----YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSH 431 (456)
T ss_pred EEEEccCCcceee----ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccC
Confidence 9999975544433 34555443333 1 24779999999999999999987 788888999 8889999999
Q ss_pred ecccCCCCCCcccEEEEee--cCCeEEEEecC
Q 046226 382 LGRFGEETEDEYCTICTGS--LDGVLKMWRVT 411 (434)
Q Consensus 382 ~~~~~~~~~~~~~~l~s~~--~Dg~v~iw~~~ 411 (434)
|. ..++++++ .|+.|++|..+
T Consensus 432 ~~---------~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PT---------ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CC---------cCeeeecCcCCCceEEEecCC
Confidence 98 88999998 79999999865
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-37 Score=273.53 Aligned_cols=292 Identities=20% Similarity=0.296 Sum_probs=248.2
Q ss_pred cceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEE-EeCC-EEEEEEcCCeE
Q 046226 80 SSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAME-VSHD-RVYAAYGDGKI 154 (434)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~~~~-~l~~~s~dg~i 154 (434)
...+.++.+.|..+.|..|+| +.++||+++..+.+|+|+..+..+. .+.+|+..|.++. |+.+ .|++|+.|.++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 344566778899999999999 5699999999999999998876655 7889999999999 5544 89999999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCe-----e
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSK-----C 228 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~-----~ 228 (434)
++|.++.+... ...+ ....+|.+.|.+++++..+ ..|++++.|++|++|++...+ .
T Consensus 390 ilWr~~~~~~~-~~~~-----------------a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~ 451 (775)
T KOG0319|consen 390 ILWRLNNNCSK-SLCV-----------------AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPI 451 (775)
T ss_pred EEEEecCCcch-hhhh-----------------hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccc
Confidence 99988433221 1100 1123799999999997654 678899999999999997621 1
Q ss_pred E----EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC
Q 046226 229 I----ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT 303 (434)
Q Consensus 229 ~----~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 303 (434)
+ .+...|...|+|++++|+. +++||+.|.+.++|++. .......+.+|...+.++.|++..+.+++++.
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg 525 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSG 525 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc------CceEEEEeeCCccceEEEEeccccceeEeccC
Confidence 1 1334699999999999999 99999999999999987 56778899999999999999999999999999
Q ss_pred CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226 304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381 (434)
Q Consensus 304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 381 (434)
|++|+||.+.+. ...+++.||...|...+| ++..|++++.||.|++|+++++ .|++++.+|.+.|++++.+
T Consensus 526 D~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~---eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 526 DKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN---ECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred CceEEEEEeccc----eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---hhhhhhhhccceeEEEeec
Confidence 999999998644 445678899999999888 4789999999999999999998 8999999999999999999
Q ss_pred ecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 382 LGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 382 ~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
+. ..+++||+.||.|.+|.=.+
T Consensus 599 ~~---------~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 599 PL---------LDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred Cc---------cceeEecCCCeEEEEeecCc
Confidence 98 78999999999999997444
No 31
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3e-36 Score=249.65 Aligned_cols=283 Identities=22% Similarity=0.322 Sum_probs=237.9
Q ss_pred eccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC-C----EEEEEEcCCeEEEeecCCCCC
Q 046226 90 KKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH-D----RVYAAYGDGKIRVWRSTWDNG 164 (434)
Q Consensus 90 ~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~----~l~~~s~dg~i~vwd~~~~~~ 164 (434)
.|.+.|.++...++.+++|++||.+++||. .|+....+.+|.++|.+++|.- + .+++++.|.++++|.++.+..
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 388999999888999999999999999995 6788999999999999888753 3 699999999999999876544
Q ss_pred ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-------------------
Q 046226 165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD------------------- 225 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------------- 225 (434)
...... ...+|...|.++...+++..+++|+.|.+|++|+..+
T Consensus 182 ~~~~~~------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~ 243 (423)
T KOG0313|consen 182 KVKALK------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR 243 (423)
T ss_pred hhhHHh------------------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh
Confidence 322210 1127999999999999999999999999999999321
Q ss_pred ------CeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226 226 ------SKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY 299 (434)
Q Consensus 226 ------~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 299 (434)
+.++..+.+|.++|.++.|++.+.+++++.|.+|+.||+. .......+. ....+.++.++|..++|+
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle------tg~~~~~~~-~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE------TGGLKSTLT-TNKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEee------cccceeeee-cCcceeEeecccccceee
Confidence 2346678899999999999997799999999999999998 222232322 335789999999999999
Q ss_pred EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEeccCCCceeeEEEeecccccee
Q 046226 300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR 376 (434)
Q Consensus 300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 376 (434)
+|+.|..|++||.+...... ....+.+|.+.|.++.|++ .+|++|+.|+++++||+++.. .++..+.+|.+.|.
T Consensus 317 ~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl 393 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVL 393 (423)
T ss_pred ecCCCCceeecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEE
Confidence 99999999999998775443 3357789999999999974 489999999999999999862 48899999999999
Q ss_pred EEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
++.|.. +..|++||.|.+|+|+.-.
T Consensus 394 ~vdW~~----------~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 394 SVDWNE----------GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEeccC----------CceEEeccCcceEEEeccc
Confidence 999986 5689999999999998754
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.1e-38 Score=260.88 Aligned_cols=271 Identities=19% Similarity=0.348 Sum_probs=234.6
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCcccceeeeEE-----EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226 55 TSPLSSPRHPFNPTAAAGSSSPETSSSYRCISS-----VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR 127 (434)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~ 127 (434)
..+++.....+.++++.++++.+.+..|+.... ++.|+.+|.++.| ++.++++|+.+|.|++|+.. ...+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHH
Confidence 456677778899999999999888888877433 5679999999999 99999999999999999864 444555
Q ss_pred ccCCC-ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226 128 LKAKT-SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV 204 (434)
Q Consensus 128 ~~~~~-~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 204 (434)
++.|. ..|.+++|+|+ .+++++.||+|+|||....+....+ .+|.-.|.+++|+|
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL----------------------~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL----------------------RGHGWDVKSVDWHP 232 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee----------------------ccCCCCcceeccCC
Confidence 55554 89999999996 8999999999999998766554444 27999999999999
Q ss_pred CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226 205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY 283 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 283 (434)
...++++|+.|..|++||.+++.++.++.+|+..|..+.|++++ +|++++.|..++++|++ ..+.+..+++|.
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR------~mkEl~~~r~Hk 306 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR------TMKELFTYRGHK 306 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehh------HhHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999 99999999999999998 444566788999
Q ss_pred cCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226 284 SPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWARE 357 (434)
Q Consensus 284 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 357 (434)
..+.++.|+| ...+|.+|+.||.|..|.+...... ...-.+|...|++++++ |.+|++|+.|.++++|.-.
T Consensus 307 kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 307 KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hhheeeccccccccceeeccCCCceEEEeccccccc---cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999999999 6678999999999999998633332 23445899999999998 7799999999999999754
No 33
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-35 Score=250.39 Aligned_cols=349 Identities=15% Similarity=0.177 Sum_probs=272.6
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeE-------EEeeccccEEEEEE--cCCEE
Q 046226 35 PSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCIS-------SVLKKDGQILCIAV--GNGFI 105 (434)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~--~~~~l 105 (434)
.+..-.+...++....+.+|..+...++++|.+..++++...++++.|.+.. ++..-.++|..++| +++.+
T Consensus 39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI 118 (603)
T KOG0318|consen 39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRI 118 (603)
T ss_pred CEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEE
Confidence 3444445566777889999999999999999999999999999999888754 35556899999999 77777
Q ss_pred EEEeC--CCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226 106 YTGSD--SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV 180 (434)
Q Consensus 106 ~tg~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
++.++ ++..+++-.+++..+.++.+|...|++++|-|. ++++|+.|++|.+|+-.- ..++
T Consensus 119 ~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk----------- 183 (603)
T KOG0318|consen 119 AAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFK----------- 183 (603)
T ss_pred EEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeee-----------
Confidence 66654 333334334478889999999999999999886 899999999999996321 1111
Q ss_pred eEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc---cCccCeEEEEEcCCC-eEEEEeCC
Q 046226 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ---AHSEPINALVVADDG-VLYSASDD 256 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~d 256 (434)
..+..|..-|.|+.|+|||.+|++++.||.|.+||-.+++.+..+. +|.+.|.++.|+||+ .+++++.|
T Consensus 184 -------~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD 256 (603)
T KOG0318|consen 184 -------SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD 256 (603)
T ss_pred -------ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC
Confidence 0123699999999999999999999999999999999999999998 899999999999999 99999999
Q ss_pred CeEEEEecccccCcc-------------------------------------eeEEEEEecccccCeEEEEEecCCCEEE
Q 046226 257 ATVRVWRRYFYSENQ-------------------------------------LHTLILTLTAKYSPVKTLTLTLDDGLLY 299 (434)
Q Consensus 257 g~i~iwd~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 299 (434)
.+++|||+....... .......+.+|...|+++..++++.+|+
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred ceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 999999985211000 0012235678999999999999999999
Q ss_pred EEcCCCeEEEEEcCcccccccc------------------------------c--------C----c-------------
Q 046226 300 GGCTDGYIHYWHKGWFSAQLQY------------------------------G--------G----A------------- 324 (434)
Q Consensus 300 ~~~~dg~i~i~d~~~~~~~~~~------------------------------~--------~----~------------- 324 (434)
+|+.||.|.-||.......... . . .
T Consensus 337 SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 337 SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 9999999999996543211000 0 0 0
Q ss_pred --------------ccCc----------ccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEE
Q 046226 325 --------------LQGH----------THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIA 380 (434)
Q Consensus 325 --------------~~~~----------~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 380 (434)
++.+ .....++..+++.++.|+.||.|+||.+..+.. .....+..|.++|+++++
T Consensus 417 ~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 417 GGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAY 495 (603)
T ss_pred CCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEE
Confidence 0000 001122223467999999999999999987643 445567789999999999
Q ss_pred eecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 381 FLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 381 ~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
+|+ +.+||+|...+.|.+||+.+.+.
T Consensus 496 Spd---------~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 496 SPD---------GAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred CCC---------CcEEEEeccCCcEEEEEcccCce
Confidence 999 99999999999999999998765
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-35 Score=261.08 Aligned_cols=325 Identities=20% Similarity=0.266 Sum_probs=264.9
Q ss_pred CCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeee--------------------------------------EEE-
Q 046226 48 SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI--------------------------------------SSV- 88 (434)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~- 88 (434)
...+.+|+..+-...+..+...+.+-+.++.+-.|.|- ..+
T Consensus 182 ~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 182 TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 45677888888877777676667776666665555553 111
Q ss_pred eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEe--CCEEEEEEc-CCeEEEeecCCCC
Q 046226 89 LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS--HDRVYAAYG-DGKIRVWRSTWDN 163 (434)
Q Consensus 89 ~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~--~~~l~~~s~-dg~i~vwd~~~~~ 163 (434)
......|+|.+| .-++|++|-..|...+|++.+..+++.+.-...+|..++|+ .|.++.|+. -|.+-||+.....
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred cccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 122367999999 67899999999999999999999999998888899999999 578888877 4899999987654
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV 243 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 243 (434)
-+-.. ++|...+++++++|||+++++|++||.|+|||..++-|+.+|..|...|+.+.
T Consensus 342 YVlKQ----------------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~ 399 (893)
T KOG0291|consen 342 YVLKQ----------------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQ 399 (893)
T ss_pred eeeec----------------------cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEE
Confidence 44333 37999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCC-eEEEEEcCccccccc
Q 046226 244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDG-YIHYWHKGWFSAQLQ 320 (434)
Q Consensus 244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~ 320 (434)
|+..+ .+++.+.||+|+.||+. ......++.. ......+++..|.|..+.+|+.|. .|++|++.++ +
T Consensus 400 f~~~g~~llssSLDGtVRAwDlk------RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG----q 469 (893)
T KOG0291|consen 400 FTARGNVLLSSSLDGTVRAWDLK------RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG----Q 469 (893)
T ss_pred EEecCCEEEEeecCCeEEeeeec------ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC----e
Confidence 99999 99999999999999997 2222223222 234567899999999999999887 7999998543 4
Q ss_pred ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226 321 YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT 398 (434)
Q Consensus 321 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 398 (434)
+...+.||.++|.+++|+ ++.|++++.|.+||+||+-... ..+.++ .+...+..++|.|+ |+.|++
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrPd---------G~elaV 537 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRPD---------GKELAV 537 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcCC---------CCeEEE
Confidence 456788999999987664 7899999999999999987642 223333 45677899999999 999999
Q ss_pred eecCCeEEEEecCCCCcc
Q 046226 399 GSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 399 ~~~Dg~v~iw~~~~~~~~ 416 (434)
+..||.|.+||...+...
T Consensus 538 aTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEecceEEEEEhhhceee
Confidence 999999999999877543
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=237.53 Aligned_cols=279 Identities=18% Similarity=0.285 Sum_probs=240.8
Q ss_pred CCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226 47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK 118 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd 118 (434)
+.-.+.+|...++...|.|++..+++++.|..+-.|+. ...+++|+++|..+.| +++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34567899999999999999999999999999988885 4568899999999999 999999999999999999
Q ss_pred CCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226 119 QPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG 195 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (434)
.++++.+..++.|...|+++....- .+.+++.|+++++||++....++.+ ...-
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-----------------------~~ky 175 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-----------------------ENKY 175 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-----------------------ccce
Confidence 9999999999999999999984432 6778888999999999988777666 3566
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT 274 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 274 (434)
.++++.|..++..+.+|+-|+.|++||++.......+.+|.+.|+.+..+++| .+.+-+.|.++++||++..... ..
T Consensus 176 qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--~R 253 (338)
T KOG0265|consen 176 QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--QR 253 (338)
T ss_pred eEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC--Cc
Confidence 79999999999999999999999999999999999999999999999999999 9999999999999999833322 22
Q ss_pred EEEEecccc----cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCC
Q 046226 275 LILTLTAKY----SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSAD 348 (434)
Q Consensus 275 ~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d 348 (434)
.+..+.++. ......+|+|++..+-+|+.|..+++||.. ...+...++||.+.|.+++|.+ .+|.+++.|
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~----~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT----SRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc----cccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 233333332 345678999999999999999999999964 3344457889999999999985 489999999
Q ss_pred CcEEEE
Q 046226 349 STSRVW 354 (434)
Q Consensus 349 g~i~iw 354 (434)
.+|++=
T Consensus 330 k~i~lg 335 (338)
T KOG0265|consen 330 KTIYLG 335 (338)
T ss_pred ceeEee
Confidence 999874
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.9e-34 Score=286.70 Aligned_cols=284 Identities=18% Similarity=0.196 Sum_probs=225.0
Q ss_pred EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc----e----eEeeccCCCccEEEEEEeCC---EEEEEEcCCeE
Q 046226 88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF----T----ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKI 154 (434)
Q Consensus 88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i 154 (434)
+..|.+.|.+++| ++++||+|+.|+.|+|||.... . ....+. +...|.+++|++. .+++++.||.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999 8999999999999999997542 1 122233 3467899999863 89999999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 233 (434)
++||+.+++.+..+ .+|...|++++|+| ++.+|++|+.||.|++||++++..+..+.
T Consensus 558 ~lWd~~~~~~~~~~----------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 558 QVWDVARSQLVTEM----------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred EEEECCCCeEEEEe----------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99999866544433 26999999999997 78899999999999999999999888887
Q ss_pred cCccCeEEEEEcC-CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226 234 AHSEPINALVVAD-DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311 (434)
Q Consensus 234 ~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 311 (434)
.+ ..+.++.|.+ ++ .|++|+.||.|++||++.. ......+.+|...|.++.|. ++.+|++++.|+.|++||
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 54 6789999964 56 9999999999999998721 12334566888999999997 678999999999999999
Q ss_pred cCcccc--cccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCcee--------eE--EEeeccccceeE
Q 046226 312 KGWFSA--QLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHT--------ML--AVLVGHRGPIRC 377 (434)
Q Consensus 312 ~~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--------~~--~~~~~h~~~v~~ 377 (434)
++.... .......+.+|...+.++.++ +.+|++|+.|+.|++|+........ .+ .....|...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 874321 122334667888888777765 6799999999999999976542110 00 112345667999
Q ss_pred EEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226 378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
++|+|+ +.+|++|+.||.|+||++
T Consensus 769 v~ws~~---------~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQ---------SSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCC---------CCeEEEecCCCcEEEEec
Confidence 999998 899999999999999996
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-35 Score=245.15 Aligned_cols=281 Identities=21% Similarity=0.313 Sum_probs=238.1
Q ss_pred CEEEEEeCCCeEEEec--CCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 103 GFIYTGSDSNVIRIWK--QPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 103 ~~l~tg~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
.-++.|.-.+..+..+ +....+...+.+|...|+.+-|+|+ .+++++.|++|++||..+++....++
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr--------- 147 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR--------- 147 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh---------
Confidence 3455554444444332 1233455667789999999999998 66777789999999999887755553
Q ss_pred ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-CeeEEEcccCccCeEEEEEcCCC-eEEEEeCC
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-SKCIETIQAHSEPINALVVADDG-VLYSASDD 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d 256 (434)
+|.+.+.+|+|+..|+++++++.|-.+++||.++ .++++.+.+|...|.+++|-|.| ++++++.|
T Consensus 148 -------------GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 148 -------------GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred -------------ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 7999999999999999999999999999999987 57888888999999999999999 99999999
Q ss_pred CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226 257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA 336 (434)
Q Consensus 257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 336 (434)
.+|+.|++. ....+..+.+|...|..++.+.||.++++++.|.+|++|-+.+.... ..+..|+.+|-|++
T Consensus 215 ~tik~We~~------tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k----~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 215 NTIKAWECD------TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCK----AELREHEHPVECIA 284 (406)
T ss_pred cceeEEecc------cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhh----hhhhccccceEEEE
Confidence 999999987 66778889999999999999999999999999999999997644333 35568888888887
Q ss_pred ee------------C-----CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226 337 SV------------A-----NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG 399 (434)
Q Consensus 337 ~~------------~-----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 399 (434)
|- | .++.+++.|++|++||+.++ .++.++.+|...|..++|+|. |+||+|+
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~ghdnwVr~~af~p~---------Gkyi~Sc 352 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGHDNWVRGVAFSPG---------GKYILSC 352 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEecccceeeeeEEcCC---------CeEEEEE
Confidence 62 2 38999999999999999999 999999999999999999999 9999999
Q ss_pred ecCCeEEEEecCCCCccccccccccCceeEee
Q 046226 400 SLDGVLKMWRVTRPKSSCGHLNKTNGHEYFEL 431 (434)
Q Consensus 400 ~~Dg~v~iw~~~~~~~~~~~~~~~~g~~~~~~ 431 (434)
.+|+++++||+++.+.. ..++.|+.|+.
T Consensus 353 aDDktlrvwdl~~~~cm----k~~~ah~hfvt 380 (406)
T KOG0295|consen 353 ADDKTLRVWDLKNLQCM----KTLEAHEHFVT 380 (406)
T ss_pred ecCCcEEEEEeccceee----eccCCCcceeE
Confidence 99999999999988753 34456777664
No 38
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=265.95 Aligned_cols=280 Identities=26% Similarity=0.419 Sum_probs=251.8
Q ss_pred ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEee-ccCCCccEEEEEEe--CCEEEEEEcCCeEEEeecCCCCCcee
Q 046226 91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGR-LKAKTSMVVAMEVS--HDRVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~--~~~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
|...++|..+.++++++++.|++|++||..++..+.. +.+|.+.|.++++. .+.+++|+.|.++++||..++.+...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 5677888888999999999999999999999999888 99999999999999 67999999999999999988887777
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD 247 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (434)
+. +|.+.|.++... ..++++|+.|.+|++|++.++.++..+.+|.++|+++..+ .
T Consensus 287 l~----------------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~ 341 (537)
T KOG0274|consen 287 LQ----------------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-E 341 (537)
T ss_pred ec----------------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-C
Confidence 64 699999999875 5678889999999999999999999999999999999998 5
Q ss_pred CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226 248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG 327 (434)
Q Consensus 248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 327 (434)
.++++|+.|+.|++||+. ..+.+..+.+|...|.++.+... ..+++|+.|+.|++||++... +....+.+
T Consensus 342 ~~lvsgs~d~~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~ 411 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQG 411 (537)
T ss_pred CEEEEEecCceEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh---hhhhhhcC
Confidence 599999999999999987 77788899999999999988665 899999999999999997553 55667889
Q ss_pred cccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226 328 HTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406 (434)
Q Consensus 328 ~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 406 (434)
|...+..+.+.+++|++++.|+.|++||.+++ .++..+.+ |.+.|..+++. ...+++++.||.++
T Consensus 412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~-----------~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG-----------KEEILCSSDDGSVK 477 (537)
T ss_pred CcccccccccccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC-----------cceEEEEecCCeeE
Confidence 99999999999999999999999999999998 78888888 77889888886 24699999999999
Q ss_pred EEecCCCCccccc
Q 046226 407 MWRVTRPKSSCGH 419 (434)
Q Consensus 407 iw~~~~~~~~~~~ 419 (434)
+||+++++.....
T Consensus 478 l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 478 LWDLRSGTLIRTL 490 (537)
T ss_pred EEecccCchhhhh
Confidence 9999999876544
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-35 Score=265.63 Aligned_cols=291 Identities=19% Similarity=0.268 Sum_probs=252.1
Q ss_pred EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC
Q 046226 88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN 163 (434)
Q Consensus 88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~ 163 (434)
|...+.+|..++| ...+++++-..|.|++||..=+.++.++..|.++|..++|+|. .+++|+.|-.|+||+..+..
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 4446778999999 7889999999999999999999999999999999999999997 89999999999999998777
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV 243 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 243 (434)
++..+ .+|-+.|+.+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|..
T Consensus 85 clftL----------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 85 CLFTL----------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ehhhh----------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 66655 38999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEecccccCc-----------------------ceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226 244 VADDG-VLYSASDDATVRVWRRYFYSEN-----------------------QLHTLILTLTAKYSPVKTLTLTLDDGLLY 299 (434)
Q Consensus 244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 299 (434)
|+|.. .+++++-|.+||+||+...... ........+.+|...|+-++|+|.-.+++
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV 222 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV 222 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE
Confidence 99966 9999999999999998522111 01123456789999999999999999999
Q ss_pred EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226 300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC 377 (434)
Q Consensus 300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 377 (434)
+|+.|..|++|.+.. .+.-...+..+|.+.|.++-|++ +++++.++|+.|+|||+... +.+.+++-..+.-+.
T Consensus 223 SG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~ 297 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWI 297 (1202)
T ss_pred ecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEE
Confidence 999999999998863 23333457789999999999987 69999999999999999987 788888888889999
Q ss_pred EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
++.+|. .++++.| .|+-+.+|.++..++
T Consensus 298 laahP~---------lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 298 LAAHPE---------LNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred EEecCC---------cceeeee-cCCceEEEEEcccCc
Confidence 999998 6655554 577788888886554
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.8e-35 Score=263.30 Aligned_cols=202 Identities=16% Similarity=0.377 Sum_probs=188.1
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST 160 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~ 160 (434)
..++.||.++|..+.| +.++|++++.|++||+|.+.+...+..+++|..+|+++.|+|. ++++|+.|++.++|...
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 3558999999999999 8999999999999999999999999999999999999999997 89999999999999987
Q ss_pred CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226 161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 240 (434)
.....+.+ .+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+|.++|.
T Consensus 524 ~~~PlRif----------------------aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 524 HNKPLRIF----------------------AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred cCCchhhh----------------------cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence 65544444 37999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
+++|+|+| +|++|+.||.|.+||+. ....+..+.+|.+.|.++.|+.+|..|++|+.|.+|++||+..
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLA------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcC------CCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999 99999999999999997 5566777888999999999999999999999999999999853
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-34 Score=254.98 Aligned_cols=277 Identities=22% Similarity=0.284 Sum_probs=242.1
Q ss_pred EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226 86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~ 161 (434)
+++..|+..|.|+.+ ...+++++-.+|.|.|||.++...+..+....-+|.+..|-+. .+++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 345568999999999 7889999999999999999999999999999999999999774 999999999999999999
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeE
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPIN 240 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~ 240 (434)
.+.+..+. .|.+.|++++.+|...++++++.|-+|++||.+.. .+.+++.+|...|.
T Consensus 87 ~ekV~~Fe----------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 87 GEKVKTFE----------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred ceeeEEee----------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence 88888775 69999999999999999999999999999999754 78899999999999
Q ss_pred EEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC--CCEEEEEcCCCeEEEEEcCccc
Q 046226 241 ALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYWHKGWFS 316 (434)
Q Consensus 241 ~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~ 316 (434)
+++|+|.. .+++++-|++|++|.+. ......++.+|...|+++++-+. ..+|++|+.|..|+|||..+
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslg------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-- 216 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLG------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-- 216 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcC------CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--
Confidence 99999977 99999999999999886 44556778899999999999884 46999999999999999753
Q ss_pred ccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 317 AQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 317 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
..+..++.||...|.++.|.+. .+++|++||++|||+..+- +....+.-.-++|+|++..+. +.
T Consensus 217 --k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~---------~~ 282 (794)
T KOG0276|consen 217 --KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKG---------DG 282 (794)
T ss_pred --HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCC---------CC
Confidence 4455678899999999999887 8999999999999998775 445555556678999998877 56
Q ss_pred EEEEeecCCeEE
Q 046226 395 TICTGSLDGVLK 406 (434)
Q Consensus 395 ~l~s~~~Dg~v~ 406 (434)
.++.|.+.|.|.
T Consensus 283 ~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 283 KIAVGFDEGSVT 294 (794)
T ss_pred eEEEeccCCcEE
Confidence 677777666553
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-34 Score=228.95 Aligned_cols=284 Identities=13% Similarity=0.210 Sum_probs=234.3
Q ss_pred EEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC
Q 046226 87 SVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD 162 (434)
Q Consensus 87 ~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~ 162 (434)
.++||..+++.+.+ +|++|++++.|.+..||--.+|+.+.++.+|.+.|+|+..+-+ .+++|++|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999 8999999999999999998899999999999999999998775 9999999999999999999
Q ss_pred CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-----CCcEEEEEcC-------CCeeEE
Q 046226 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----DKTIKVWRIR-------DSKCIE 230 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~-------~~~~~~ 230 (434)
+.+..++ ...+|..+.|+++|++++.... .+.|.++|++ ..+++.
T Consensus 85 k~la~~k-----------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 85 KQLATWK-----------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred cEEEEee-----------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 8888774 6778999999999999887754 3679999998 445677
Q ss_pred EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226 231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY 309 (434)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 309 (434)
.+..+...++.+-|.|-+ .|++|..||.|.+||++ .....+.....|...|+.+.++++..++++++.|.+-++
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~-----~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDAR-----TGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcc-----cCceeeechhhhccccccccccCCcceEEecccCcccee
Confidence 888888999999999999 99999999999999988 234566667788899999999999999999999999999
Q ss_pred EEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEe--ccCCC---------ceeeEEEeecccccee
Q 046226 310 WHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWA--REQDG---------RHTMLAVLVGHRGPIR 376 (434)
Q Consensus 310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd--~~~~~---------~~~~~~~~~~h~~~v~ 376 (434)
||+++......+ ....+|.+.++.+ ++++.|+.....-|=- .+.++ ..+.+..+++|-++|+
T Consensus 217 ~D~~tl~v~Kty-----~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN 291 (327)
T KOG0643|consen 217 VDVRTLEVLKTY-----TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN 291 (327)
T ss_pred eeccceeeEEEe-----eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence 998755444333 2334677777664 4555554332222221 11110 0145678899999999
Q ss_pred EEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
+++|+|+ |...+||++||.|++.-++.
T Consensus 292 svAfhPd---------GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 292 SVAFHPD---------GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eeEECCC---------CcccccCCCCceEEEEEecc
Confidence 9999999 99999999999999987664
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-33 Score=233.56 Aligned_cols=295 Identities=16% Similarity=0.223 Sum_probs=239.6
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW 157 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw 157 (434)
-..+.+|..|++.|.+++. +.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.+ +|++|..+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3457788999999999999 7899999999999999999999999999999999999999987 89999999999999
Q ss_pred ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE 237 (434)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 237 (434)
+..++.....+. .....+.-+.|+|-+..|+.|+.||.+.+|.+.++...+.+.+|..
T Consensus 134 ~~stg~~~~~~~----------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 134 KVSTGGEQWKLD----------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred EcccCceEEEee----------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 998876655552 2556788899999999999999999999999999888899999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcc
Q 046226 238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF 315 (434)
Q Consensus 238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 315 (434)
++++=.|.|+| +++++..||+|++||+.. ..+...+. .......++.++..+..++.|..++.+++-+....
T Consensus 192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt------g~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKT------GQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred CcccccccCCCceEEEEecCceEEEEecCC------CceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc
Confidence 99999999999 999999999999999872 22222222 22346677888888888889988888888775443
Q ss_pred ccccccc----CcccCcccceEEEE---eeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccC
Q 046226 316 SAQLQYG----GALQGHTHAVMCLA---SVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFG 386 (434)
Q Consensus 316 ~~~~~~~----~~~~~~~~~v~~~~---~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 386 (434)
+...... .....+...+-|+. ++.. +.|+|+-||+|.|||+... .++..-.|...|+.+.|.++
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~t--- 338 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLNT--- 338 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcCc---
Confidence 3222111 11123333444443 3333 7899999999999999874 45556679999999999874
Q ss_pred CCCCCcccEEEEeecCCeEEEEecCCCCcccc
Q 046226 387 EETEDEYCTICTGSLDGVLKMWRVTRPKSSCG 418 (434)
Q Consensus 387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 418 (434)
.+|++++.||.|+.||.++|+....
T Consensus 339 -------~~l~t~c~~g~v~~wDaRtG~l~~~ 363 (399)
T KOG0296|consen 339 -------DYLLTACANGKVRQWDARTGQLKFT 363 (399)
T ss_pred -------chheeeccCceEEeeeccccceEEE
Confidence 5899999999999999999986543
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.7e-33 Score=220.01 Aligned_cols=250 Identities=20% Similarity=0.295 Sum_probs=213.7
Q ss_pred eeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226 123 TECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS 199 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (434)
..+..+++|.+.+..++|+|. .|++++.|..|++|+...+.......... .+|...|++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld------------------~~hkrsVRs 66 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD------------------DGHKRSVRS 66 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc------------------ccchheeee
Confidence 456778899999999999998 69999999999999987533222211110 159999999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCC--CeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226 200 IAINVSDDTLYSASLDKTIKVWRIRD--SKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276 (434)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 276 (434)
++|+|.|++|++|+.|.++.||.-.. .+++..+.+|...|.|++|+++| +|++++.|+.|-||.+. +.......
T Consensus 67 vAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d---eddEfec~ 143 (312)
T KOG0645|consen 67 VAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID---EDDEFECI 143 (312)
T ss_pred eeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec---CCCcEEEE
Confidence 99999999999999999999998764 47899999999999999999999 99999999999999887 55667788
Q ss_pred EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE
Q 046226 277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW 354 (434)
Q Consensus 277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw 354 (434)
..+..|...|..+.|+|...+|++++.|.+|++|+-.. ........++.+|...|.+++|+ |..|+++++|++++||
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw 222 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIW 222 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEee
Confidence 89999999999999999999999999999999998654 45667778899999999999997 6799999999999999
Q ss_pred eccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 355 AREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 355 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
..... .-..|...+..+.|. + ..|+|++.|+.|+++.-..
T Consensus 223 ~~~~~-------~~~~~sr~~Y~v~W~-~----------~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 223 RLYTD-------LSGMHSRALYDVPWD-N----------GVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeccC-------cchhcccceEeeeec-c----------cceEeccCCCEEEEEEecC
Confidence 86543 112478889999998 3 3799999999999998774
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=7.7e-35 Score=228.36 Aligned_cols=282 Identities=19% Similarity=0.320 Sum_probs=235.4
Q ss_pred EEeeccccEEEEEE-----cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeec
Q 046226 87 SVLKKDGQILCIAV-----GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRS 159 (434)
Q Consensus 87 ~~~~h~~~v~~~~~-----~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~ 159 (434)
+..+|+.+|..++| +|-+|++++.|+.=.+-+-+++.-+.++.+|.+.|+....+.+ +-++++.|-+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 45789999999999 7889999999999999999999999999999999999999888 6778888999999999
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEcccCccC
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETIQAHSEP 238 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~ 238 (434)
-++..+..+ .|..-|.+++|+.|.++|++|+.+..++|+|++..+ +...+.+|.+.
T Consensus 89 ~tgdelhsf-----------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~ 145 (334)
T KOG0278|consen 89 VTGDELHSF-----------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG 145 (334)
T ss_pred hhhhhhhhh-----------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence 888777776 599999999999999999999999999999998654 56778899999
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
|..+.|.... .+++...|+.||+||.+ .......+. ...+|+++.++++|++|.++ ..+.|.+||......
T Consensus 146 Ir~v~wc~eD~~iLSSadd~tVRLWD~r------Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 146 IRTVLWCHEDKCILSSADDKTVRLWDHR------TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL 217 (334)
T ss_pred ceeEEEeccCceEEeeccCCceEEEEec------cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc
Confidence 9999998666 88888999999999998 222333332 34689999999999877665 467899999765443
Q ss_pred cccccCcccCcccceEE--EEeeCCEEEEecCCCcEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCccc
Q 046226 318 QLQYGGALQGHTHAVMC--LASVANYVISGSADSTSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
...+ . -...|.+ +.+....+++|++|..++.||..++ ..+.. .++|.++|.|+.|+|+ |.
T Consensus 218 lKs~----k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPd---------GE 280 (334)
T KOG0278|consen 218 LKSY----K-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPD---------GE 280 (334)
T ss_pred eeec----c-CccccccccccCCCceEEecCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCC---------Cc
Confidence 3222 1 1123444 4445569999999999999999998 44555 4899999999999999 99
Q ss_pred EEEEeecCCeEEEEecCCCCcc
Q 046226 395 TICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 395 ~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
.-++||+||+|++|.+..++..
T Consensus 281 ~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eeeccCCCceEEEEEecCCCch
Confidence 9999999999999999877654
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=237.23 Aligned_cols=249 Identities=19% Similarity=0.302 Sum_probs=221.1
Q ss_pred ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226 122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS 199 (434)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (434)
.+....+++|.+.|.|+++.|. .+++|+.|++|+|||+.+++....+. +|...|..
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------------------Ghi~~vr~ 198 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------------------GHIETVRG 198 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------------chhheeee
Confidence 4555678899999999999995 89999999999999999886655552 79999999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226 200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT 278 (434)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 278 (434)
+++++-..|+++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|..+|+||++ ....+..
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR------tr~~V~~ 272 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR------TRASVHV 272 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec------ccceEEE
Confidence 9999999999999999999999999999999999999999999999987 99999999999999999 6677889
Q ss_pred ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEec
Q 046226 279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAR 356 (434)
Q Consensus 279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~ 356 (434)
+.+|..+|.++.+.|-+..+++|+.|++|++||++..+.. ..+..|...|.++..+++ .+++++.| .|+-|++
T Consensus 273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~----~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~ 347 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM----ITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKL 347 (460)
T ss_pred ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee----EeeecccceeeEEecCCchhhhhccCCc-cceeccC
Confidence 9999999999999998899999999999999998755443 345578889999988754 67777766 6999999
Q ss_pred cCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 357 EQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
..+ ..+..+.+|..-|.+++...| .++++|++.|.+.+||.+++-+.
T Consensus 348 p~g---~f~~nlsgh~~iintl~~nsD----------~v~~~G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 348 PEG---EFLQNLSGHNAIINTLSVNSD----------GVLVSGGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred Ccc---chhhccccccceeeeeeeccC----------ceEEEcCCceEEEEEecCcCccc
Confidence 988 677779999999999999876 48999999999999999988654
No 47
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=251.57 Aligned_cols=350 Identities=17% Similarity=0.257 Sum_probs=281.3
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeee-----EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226 46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI-----SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK 118 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd 118 (434)
...-.+.+|+..++...+...+.++++++.|..+-.|..+ ..+.||.+.|+..-| +.++|++.+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 4445678899999999999999999999999999999886 458999999999999 588999999999999999
Q ss_pred CCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCc---------------------eeeEeee-----
Q 046226 119 QPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGV---------------------KHVKLAT----- 172 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~---------------------~~~~~~~----- 172 (434)
+++..+..+.-.|.+.|+.+++.++.+++++.|+.+++|++...... +...+..
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r 257 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDR 257 (888)
T ss_pred cccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCccc
Confidence 99999999999999999999999999999999999999998221100 0000000
Q ss_pred -----------------------------------------------------------------------ccCCCCc--
Q 046226 173 -----------------------------------------------------------------------IPKTGGA-- 179 (434)
Q Consensus 173 -----------------------------------------------------------------------~~~~~~~-- 179 (434)
.+..+..
T Consensus 258 ~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~ 337 (888)
T KOG0306|consen 258 FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENT 337 (888)
T ss_pred EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCccee
Confidence 0000000
Q ss_pred --------e--eEEEe-----------ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226 180 --------V--RNLIV-----------GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP 238 (434)
Q Consensus 180 --------~--~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 238 (434)
+ ..+.. ..-...+|...|.+++++.+...+++|+ .+.|++|+..+.++++++... .
T Consensus 338 lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y 414 (888)
T KOG0306|consen 338 LVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--Y 414 (888)
T ss_pred EEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--c
Confidence 0 00000 0013567999999999998888888877 678999999999999999743 8
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
+.+..|.|.+ +++.|...|.+.+||+. ..........|.+.+.+++.+||+..+++|+.|.+|++||+.....
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdla------S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLA------SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEee------hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 8899999988 99999999999999987 3445556678999999999999999999999999999999743221
Q ss_pred -cccc--------cCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccC
Q 046226 318 -QLQY--------GGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFG 386 (434)
Q Consensus 318 -~~~~--------~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 386 (434)
.... ...+ .-...|.|+.++ +.+|+++--|.+++||-+++- +..-.+.||.-||.|+.++|+
T Consensus 489 ~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~D--- 561 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPD--- 561 (888)
T ss_pred cCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---eeeeeecccccceeEEeccCC---
Confidence 0000 0111 123467888776 779999999999999999987 778889999999999999999
Q ss_pred CCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 387 EETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
+.+++|||.|..|+||-++=|....
T Consensus 562 ------SklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 562 ------SKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred ------cCeEEeccCCCceEEeccccchhhh
Confidence 8999999999999999998776543
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-34 Score=252.50 Aligned_cols=245 Identities=21% Similarity=0.372 Sum_probs=222.2
Q ss_pred eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226 127 RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV 204 (434)
Q Consensus 127 ~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 204 (434)
.+..+...|-++.++|. .++++-.+|.|.||+.++...++.+.+ ..-+|++..|-+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV----------------------~~~PvRa~kfia 65 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV----------------------SEVPVRAAKFIA 65 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee----------------------cccchhhheeee
Confidence 45568899999999997 888888899999999999888888865 556789999999
Q ss_pred CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226 205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY 283 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 283 (434)
-.+++++|+.|..|+||+.++++.+..|..|.+.|+|++.+|.. ++++++.|-.|++||.. ........+.+|.
T Consensus 66 RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-----~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 66 RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-----NEWACEQTFEGHE 140 (794)
T ss_pred ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc-----CceeeeeEEcCcc
Confidence 99999999999999999999999999999999999999999999 99999999999999987 6778888999999
Q ss_pred cCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CC---EEEEecCCCcEEEEeccC
Q 046226 284 SPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-AN---YVISGSADSTSRVWAREQ 358 (434)
Q Consensus 284 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---~l~s~~~dg~i~iwd~~~ 358 (434)
.-|.+++|.| |.+.+++++-|++|++|.+..... ..++.+|...|.|+.+- +. +|++|++|.+|+|||..+
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 9999999999 678999999999999999864433 34677999999999985 33 999999999999999999
Q ss_pred CCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 359 DGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
. .|++++.||...|..+.|+|. -.+|+|||+||+||||+-.+-+
T Consensus 217 k---~CV~TLeGHt~Nvs~v~fhp~---------lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 217 K---SCVQTLEGHTNNVSFVFFHPE---------LPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred H---HHHHHhhcccccceEEEecCC---------CcEEEEecCCccEEEecCccee
Confidence 7 899999999999999999998 7899999999999999977654
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-33 Score=247.72 Aligned_cols=281 Identities=18% Similarity=0.329 Sum_probs=240.2
Q ss_pred EEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC
Q 046226 87 SVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN 163 (434)
Q Consensus 87 ~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~ 163 (434)
++.||...|.++++ +.+.++..+..+.|+||+..+.+++.++... .+.+..|-|. ++++|...|.+.++|+....
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 46789999999999 4444444445689999999999999998754 7888999986 89999999999999998776
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC-----CeeEEEcc-----
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD-----SKCIETIQ----- 233 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~----- 233 (434)
.+...+ .|.+.|++++.+||+..+++|+.|.+|++||..- +...+.+.
T Consensus 446 l~Eti~----------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 446 LVETIR----------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred hhhhhh----------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 666553 5999999999999999999999999999999742 11111111
Q ss_pred --cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226 234 --AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW 310 (434)
Q Consensus 234 --~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 310 (434)
.-...|.|+.++||+ +|+.+--|.+|++|-++ ..+....+.+|.-||.++.++||++.+++|+.|.+|+||
T Consensus 504 tLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 504 TLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 135689999999999 89999999999999877 667788899999999999999999999999999999999
Q ss_pred EcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCC
Q 046226 311 HKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEE 388 (434)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 388 (434)
-++-+. +.+.+.+|...|+++.|-++ .+.+++.|+.|+-||-..- .+++.+.+|...|+|++.+|+
T Consensus 578 GLdFGD----CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF---e~iq~L~~H~~ev~cLav~~~----- 645 (888)
T KOG0306|consen 578 GLDFGD----CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF---EEIQKLDGHHSEVWCLAVSPN----- 645 (888)
T ss_pred ccccch----hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh---hhheeeccchheeeeeEEcCC-----
Confidence 876443 34466799999999999765 8899999999999997765 899999999999999999999
Q ss_pred CCCcccEEEEeecCCeEEEEecCCC
Q 046226 389 TEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 389 ~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
|.+++|+|.|.+|++|.-...
T Consensus 646 ----G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 646 ----GSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred ----CCeEEeccCCceeEeeeccCc
Confidence 999999999999999997653
No 50
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.5e-33 Score=218.09 Aligned_cols=260 Identities=20% Similarity=0.272 Sum_probs=214.2
Q ss_pred CCeEEEecCCCceeEeecc--CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226 111 SNVIRIWKQPEFTECGRLK--AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV 185 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
.|.+.|-++...+-+.... .-...+..++|+++ .+++++.||++++||+..... ++
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------------Pi----- 97 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------------PI----- 97 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc--------------ch-----
Confidence 5789998886544444332 23567999999985 899999999999999643221 11
Q ss_pred ccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEE
Q 046226 186 GKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVW 262 (434)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iw 262 (434)
..+++|...|.++.|++. +..+++++.|++|++|+...++.+.++.+|...|....|+|.. ++++++.|+.+++|
T Consensus 98 --~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw 175 (311)
T KOG0277|consen 98 --HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW 175 (311)
T ss_pred --hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence 123479999999999984 5667888999999999999999999999999999999999876 99999999999999
Q ss_pred ecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-
Q 046226 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN- 340 (434)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 340 (434)
|++.. .+.. .+..|...+.++.|+. +.+.|++|+.|+.|++||++..+.. ...+.+|.-.|..+.+++.
T Consensus 176 dvr~~-----gk~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p---l~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 176 DVRSP-----GKFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP---LFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred EecCC-----Ccee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc---ceeecCCceEEEEEecCcch
Confidence 99822 2222 3677888999999988 6678999999999999999865543 4567899999999999854
Q ss_pred --EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226 341 --YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 341 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
.|++++.|-++||||...+. .++.+...|++-+..+.|++-. +.++|+++.|+.++||+-
T Consensus 247 ~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws~~~--------~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWSLFD--------PGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhhccccceEEecccccch--hhhhhhhccceEEecccccccc--------Cceeeecccccceeeecc
Confidence 89999999999999998543 4666777899999999999875 789999999999999983
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=231.73 Aligned_cols=284 Identities=19% Similarity=0.296 Sum_probs=233.8
Q ss_pred eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc--------CCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226 89 LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK--------AKTSMVVAMEVSHD--RVYAAYGDGKIRV 156 (434)
Q Consensus 89 ~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~--~l~~~s~dg~i~v 156 (434)
++....+-|..| ||++|++|+.||.|.+||..+|+....++ -+..+|.|+.|+.| .+++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 456677889999 99999999999999999999988765543 47789999999998 8999999999999
Q ss_pred eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226 157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS 236 (434)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 236 (434)
|.+.++.+++.+.. .|...|+|+.|+.|+..+++++.|.++++.-+.+|++++.+++|.
T Consensus 290 Wri~tG~ClRrFdr---------------------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs 348 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR---------------------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS 348 (508)
T ss_pred EEEecchHHHHhhh---------------------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence 99999988877742 599999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCc
Q 046226 237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 314 (434)
..|+...|.++| .+++++.||+|++|+.......... ...+...+|.++..-| +-..++++....+|+|.++..
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf----k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF----KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc----cCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence 999999999999 9999999999999997722221111 1223455788888777 456788888899999998753
Q ss_pred ccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 315 FSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 315 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
.-....-.....+...--.++++.|.++.+.++|+.++.|.+.++ .....+.-|...|..++-+|. .+
T Consensus 425 QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPH---------qN 492 (508)
T KOG0275|consen 425 QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPH---------QN 492 (508)
T ss_pred eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcc---------cc
Confidence 221111111122222223445667899999999999999999998 777888899999999999998 88
Q ss_pred EEEEeecCCeEEEEe
Q 046226 395 TICTGSLDGVLKMWR 409 (434)
Q Consensus 395 ~l~s~~~Dg~v~iw~ 409 (434)
.|++-++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999996
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=214.02 Aligned_cols=249 Identities=20% Similarity=0.309 Sum_probs=210.5
Q ss_pred eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226 124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201 (434)
Q Consensus 124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 201 (434)
....+..+.++|..+.|+.+ +.++++.|.+|++|+...+..++.+. +|...|.+++
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------------ghG~EVlD~~ 66 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------------GHGHEVLDAA 66 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec----------------------CCCceeeecc
Confidence 34567889999999999976 89999999999999988777776663 7999999999
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT 280 (434)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 280 (434)
.+.|+..|++|+.|..+.+||+++|+.++.+.+|.+.|+.+.|+.+. .+++|+.|..+++||.+ ....++++.+.
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR----S~s~ePiQild 142 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR----SRSFEPIQILD 142 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc----cCCCCccchhh
Confidence 99999999999999999999999999999999999999999999988 99999999999999998 23445666777
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccC
Q 046226 281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 281 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~ 358 (434)
.....|.++.+. +..+++|+.||+++.||++.......+ -+| +|+|+.+ +++..++++-|+++++.|-.+
T Consensus 143 ea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy----~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 143 EAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDY----FGH--PITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred hhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhh----cCC--cceeEEecCCCCEEEEeeccceeeecccch
Confidence 777889888885 578999999999999999866544332 244 6777766 578999999999999999999
Q ss_pred CCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 359 DGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 359 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+ +.+..+++|...-..+...-.. ....+++|++||.|++||+.+...+
T Consensus 215 G---klL~sYkGhkn~eykldc~l~q-------sdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 215 G---KLLKSYKGHKNMEYKLDCCLNQ-------SDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred h---HHHHHhcccccceeeeeeeecc-------cceeEEeccCCceEEEEEeccceee
Confidence 8 8899999998765544333221 1678999999999999999987654
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=253.03 Aligned_cols=271 Identities=24% Similarity=0.403 Sum_probs=228.6
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC-CCcee
Q 046226 55 TSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ-PEFTE 124 (434)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~-~~~~~ 124 (434)
...+.+..+.+++..+++++.+..+..|.. ++.+.+|...|.+++| ++.++++|+.|++|+|||+ ..+..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 566666778899999999999988877776 6667899999999999 8999999999999999999 55689
Q ss_pred EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226 125 CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI 202 (434)
Q Consensus 125 ~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 202 (434)
+.++++|...|++++|+|+ .+++|+.|++|+|||+++++....+. +|.+.|.+++|
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~----------------------~hs~~is~~~f 296 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK----------------------GHSDGISGLAF 296 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee----------------------ccCCceEEEEE
Confidence 9999999999999999996 89999999999999999876666654 69999999999
Q ss_pred ecCCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccC--eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226 203 NVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEP--INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL 277 (434)
Q Consensus 203 ~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 277 (434)
++++++|++++.|+.|++||+.++. ++..+..+... ++++.|+|++ +++++..|+.+++||+. ......
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~------~~~~~~ 370 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR------SGKSVG 370 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc------CCccee
Confidence 9999999999999999999999998 56777766555 9999999999 99999999999999998 333444
Q ss_pred EecccccC---eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee--CCEEEEec--CCC
Q 046226 278 TLTAKYSP---VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV--ANYVISGS--ADS 349 (434)
Q Consensus 278 ~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~--~dg 349 (434)
.+.+|... +.+...++.+.++++|+.|+.|++||+... .....+.+| ...+..++++ .+++++++ .|+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 44555543 344455778999999999999999998643 333456688 7778887776 66888888 789
Q ss_pred cEEEEecc
Q 046226 350 TSRVWARE 357 (434)
Q Consensus 350 ~i~iwd~~ 357 (434)
.+++|..+
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 99999754
No 54
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=232.73 Aligned_cols=285 Identities=15% Similarity=0.243 Sum_probs=233.2
Q ss_pred eEEEeeccccEEEEEE--c-CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCC
Q 046226 85 ISSVLKKDGQILCIAV--G-NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~ 161 (434)
+..|.||.+.|.|++- . -..+++|+.||.|+|||+.+..+..++++|.+.|..|++..+.+++++.|.+|+.|.+..
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence 5567899999999998 2 257999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 241 (434)
. ....+ .....+..+.-+..+..+++++. .|-|||.+...++..+.-....|.+
T Consensus 139 ~-p~~ti-----------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 139 P-PLHTI-----------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred C-cceee-----------------------eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeE
Confidence 2 11111 24456677777777888999885 4999999988999999988889999
Q ss_pred EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
+.|+|.. .|++|+.|+.|.+||++ +.....+.+.. ..-+.|+|+|..-.+++|.+|..++.||++.....
T Consensus 193 vkfNpvETsILas~~sDrsIvLyD~R--~~~Pl~KVi~~-----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p- 264 (433)
T KOG0268|consen 193 VKFNPVETSILASCASDRSIVLYDLR--QASPLKKVILT-----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRP- 264 (433)
T ss_pred EecCCCcchheeeeccCCceEEEecc--cCCccceeeee-----ccccceecCccccceeeccccccceehhhhhhccc-
Confidence 9999987 88899999999999999 34444444433 34567999998888999999999999999755444
Q ss_pred cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226 320 QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC 397 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 397 (434)
.....+|...|++++|+ |+-+++|+.|.+|+||..+.+.......+ -.-..|.|+.|+.| .++++
T Consensus 265 --~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~D---------skyi~ 331 (433)
T KOG0268|consen 265 --LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMD---------SKYII 331 (433)
T ss_pred --chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecc---------ccEEE
Confidence 34667999999999997 77999999999999999987632111111 11346899999999 89999
Q ss_pred EeecCCeEEEEecCCCCcc
Q 046226 398 TGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 398 s~~~Dg~v~iw~~~~~~~~ 416 (434)
+||+|+.|++|.-...+++
T Consensus 332 SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ecCCCcceeeeecchhhhc
Confidence 9999999999998765544
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-31 Score=213.83 Aligned_cols=293 Identities=19% Similarity=0.319 Sum_probs=230.1
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEEc--CCeEE
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAYG--DGKIR 155 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s~--dg~i~ 155 (434)
++.-+.+..-.+.|+++.| +|.+|++++.|.+++|||..+++.+.++..+.-.|..+.|.. +.++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3444455556788999999 899999999999999999999999999998888888888854 36666666 89999
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH 235 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 235 (434)
..++..++.++.+. ||...|.+++.+|-+..+++++.|++|++||++..++...+...
T Consensus 84 yLsl~dNkylRYF~----------------------GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~ 141 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFP----------------------GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS 141 (311)
T ss_pred EEEeecCceEEEcC----------------------CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC
Confidence 99998887777764 89999999999999999999999999999999988887766544
Q ss_pred ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
..+ .+++.|+| .+|++...+.|++||++............. .+.....+.+.|+|+|++++.++..+.+++.|.-.
T Consensus 142 ~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 142 GRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD 218 (311)
T ss_pred CCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence 433 57899999 666776666999999996655444333322 24567889999999999999999999999999755
Q ss_pred ccccccccCcccCcccce-EEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec-cccceeEEEEeecccCCCCCCc
Q 046226 315 FSAQLQYGGALQGHTHAV-MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDE 392 (434)
Q Consensus 315 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~ 392 (434)
+.....+.........++ .++.++++++++|+.||+|.+|+++++ ..+..+.+ +.+++.++.|.|.
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~--------- 286 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPR--------- 286 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCc---------
Confidence 443332221111111122 345568899999999999999999998 67777777 7899999999998
Q ss_pred ccEEEEeecCCeEEEEecCCC
Q 046226 393 YCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 393 ~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
..+++|+ +..+-+|=....
T Consensus 287 ~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 287 YAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred eeeeeec--CceEEEEecccc
Confidence 4555555 567888876644
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-33 Score=252.47 Aligned_cols=252 Identities=20% Similarity=0.348 Sum_probs=221.8
Q ss_pred ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226 128 LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205 (434)
Q Consensus 128 ~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 205 (434)
+...+..|-.++|+|. .++++-..|.|++||.+-+..+..+. +|.++|+.++|+|.
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd----------------------eHdGpVRgv~FH~~ 62 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD----------------------EHDGPVRGVDFHPT 62 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh----------------------ccCCccceeeecCC
Confidence 4455678999999997 89999999999999998776666553 79999999999999
Q ss_pred CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS 284 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 284 (434)
+.+|++|+.|-.|++|+..+.+++.++.+|-+.|..+.|++.- .+++++.|.+|+||+.. ....+..+.+|..
T Consensus 63 qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq------sr~~iavltGHnH 136 (1202)
T KOG0292|consen 63 QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ------SRKCIAVLTGHNH 136 (1202)
T ss_pred CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc------CCceEEEEecCce
Confidence 9999999999999999999999999999999999999999888 99999999999999987 6778889999999
Q ss_pred CeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc-------------------------ccccCcccCcccceEEEEeeC
Q 046226 285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ-------------------------LQYGGALQGHTHAVMCLASVA 339 (434)
Q Consensus 285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~ 339 (434)
.|.|..|+|....+++++-|.+|++||+...... ......+.||...|...+|.+
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 9999999999999999999999999998642211 111235678999999999998
Q ss_pred --CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 340 --NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 340 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
-.+++|++|..|++|.+...+. -.+.+..+|.+.|.++.|+|. ..+|+|.|+|++|++||+...+.+.
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~---------q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPH---------QDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCc---------cceeEecCCCccEEEEeccccccee
Confidence 4899999999999999987643 355678899999999999998 7899999999999999999876543
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-31 Score=265.90 Aligned_cols=283 Identities=15% Similarity=0.242 Sum_probs=228.8
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCcccceeeeE------------EEeeccccEEEEEE---cCCEEEEEeCCCeEE
Q 046226 51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCIS------------SVLKKDGQILCIAV---GNGFIYTGSDSNVIR 115 (434)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~ 115 (434)
+..|...+.+..+.+++..+++++.+..++.|+.-. ....+...|.+++| .+.+|++++.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 455788888888999999999999999999987421 11224567899999 478999999999999
Q ss_pred EecCCCceeEeeccCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226 116 IWKQPEFTECGRLKAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK 192 (434)
Q Consensus 116 iwd~~~~~~~~~~~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (434)
+||+.+++.+..+.+|...|++++|+| + .|++|+.||.|++||+..+..+..+.
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----------------------- 615 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----------------------- 615 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------------
Confidence 999999999999999999999999986 3 79999999999999998765544331
Q ss_pred cCCCeEEEEEe-cCCCEEEEEecCCcEEEEEcCCCe-eEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCc
Q 046226 193 HMGPITSIAIN-VSDDTLYSASLDKTIKVWRIRDSK-CIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSEN 270 (434)
Q Consensus 193 ~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 270 (434)
+...|.++.|+ +++.+|++|+.||.|++||++..+ .+..+.+|...|.++.|.+...|++++.|+.|++||++.....
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~ 695 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccc
Confidence 34578999995 568999999999999999998765 5677888999999999985559999999999999998732222
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc---------cCcccCcccceEEEEee--C
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY---------GGALQGHTHAVMCLASV--A 339 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~v~~~~~~--~ 339 (434)
.....+..+.+|...+..++|++++.+|++|+.|+.|++|+.........+ ......+...|.+++|+ +
T Consensus 696 ~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 696 INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 223456678889999999999999999999999999999997543221111 01123455678899886 5
Q ss_pred CEEEEecCCCcEEEEec
Q 046226 340 NYVISGSADSTSRVWAR 356 (434)
Q Consensus 340 ~~l~s~~~dg~i~iwd~ 356 (434)
..|++|+.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 69999999999999986
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=211.99 Aligned_cols=279 Identities=14% Similarity=0.166 Sum_probs=230.2
Q ss_pred EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee--ccCCCccEEEEEEeC---CEEEEEEcCCeEEEee
Q 046226 86 SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR--LKAKTSMVVAMEVSH---DRVYAAYGDGKIRVWR 158 (434)
Q Consensus 86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~---~~l~~~s~dg~i~vwd 158 (434)
+.+++|.+.|.+++| +|..|++|+.|+++++|+++....... ..+|.+.|..++|+| +.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 557789999999999 999999999999999999987654433 568999999999976 4999999999999999
Q ss_pred cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226 159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 238 (434)
++..+...... ....=.-+.|+|+|.+++++..|..|...|.++.+.+...+ ....
T Consensus 94 ~r~~k~~~~i~-----------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e 149 (313)
T KOG1407|consen 94 IRSGKCTARIE-----------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFE 149 (313)
T ss_pred eccCcEEEEee-----------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccce
Confidence 99888776663 33444567899999999999999999999999888776665 4556
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
+..+.|+.++ +++.....|.|.|.... ..+.+..+..|.....+|.|+|+|++|++|+.|..+.+||++
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsyp------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~---- 219 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYP------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD---- 219 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEecc------ccccccccccCCcceEEEEECCCCceEeeccccceeeccChh----
Confidence 7788888666 66666677999998655 556778889999999999999999999999999999999975
Q ss_pred cccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226 318 QLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT 395 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 395 (434)
.+.....+.-+.-+|..++|+ |++||+|++|..|-|=++++| ..+..+ .+.++...++|+|. ..+
T Consensus 220 ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG---d~~~eI-~~~~~t~tVAWHPk---------~~L 286 (313)
T KOG1407|consen 220 ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG---DRVWEI-PCEGPTFTVAWHPK---------RPL 286 (313)
T ss_pred HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccC---CeEEEe-eccCCceeEEecCC---------Cce
Confidence 344445666788899888885 889999999999999999998 445444 46888999999999 677
Q ss_pred EEEeecC---------CeEEEEecC
Q 046226 396 ICTGSLD---------GVLKMWRVT 411 (434)
Q Consensus 396 l~s~~~D---------g~v~iw~~~ 411 (434)
||-++.| |.|+++-+.
T Consensus 287 LAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 287 LAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeEEecCCCCccccccceeEEecCC
Confidence 8777654 456666544
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-32 Score=247.56 Aligned_cols=253 Identities=18% Similarity=0.269 Sum_probs=196.1
Q ss_pred eeeeEEEe-eccccEEEEEE--cCCEEEEEeCCCeEEEecCCC-------------------------------------
Q 046226 82 YRCISSVL-KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------------------------------------- 121 (434)
Q Consensus 82 ~~~~~~~~-~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------------------------------------- 121 (434)
....+.+. .|.++|+|+.| +|+|||+||.|+.|+||.+..
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 33344566 89999999999 999999999999999997643
Q ss_pred -----------------------ceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 122 -----------------------FTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 122 -----------------------~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
.+++..+++|.+.|.+|.|+.+ +|++++.|.+|++|++...++++.+
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F--------- 406 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF--------- 406 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE---------
Confidence 0122346789999999999997 8999999999999999988888877
Q ss_pred CceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD 255 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~ 255 (434)
.|.+.|+||+|+| |.++|++|+-||.|+||++...+.+. +..-..-|+++++.|+| ..+.|+.
T Consensus 407 --------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 407 --------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred --------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEe
Confidence 5999999999999 78999999999999999997766544 44445899999999999 9999999
Q ss_pred CCeEEEEecccccCcceeEEEEE--ecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCcccCcccce
Q 046226 256 DATVRVWRRYFYSENQLHTLILT--LTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV 332 (434)
Q Consensus 256 dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v 332 (434)
+|.+++|+.....-.....+... .......|+.+.+.|.. ..+++.+.|..|+|||.+......++......+...-
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee
Confidence 99999999872111111111100 01112379999999843 4688889999999999865555555443333333333
Q ss_pred EEEEeeCCEEEEecCCCcEEEEeccC
Q 046226 333 MCLASVANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 333 ~~~~~~~~~l~s~~~dg~i~iwd~~~ 358 (434)
..+..+|++|+++++|..|+||++..
T Consensus 552 Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 552 ASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eeEccCCCEEEEeecCceEEEEeCCC
Confidence 45566899999999999999999743
No 60
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=226.12 Aligned_cols=277 Identities=18% Similarity=0.278 Sum_probs=233.7
Q ss_pred ccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceee
Q 046226 93 GQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHV 168 (434)
Q Consensus 93 ~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~ 168 (434)
..|+++.. ..+.++||+.|..+.++|.+..+.+..+++|...|+.+.++++ .+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 35777777 4489999999999999999999999999999999999999997 7889999999999988655433333
Q ss_pred EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcC
Q 046226 169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVAD 246 (434)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~ 246 (434)
..|..+|+.+..+|.|.||++++.||+..+.|++++.++..... ..-.+++.+|+|
T Consensus 300 ----------------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp 357 (506)
T KOG0289|consen 300 ----------------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP 357 (506)
T ss_pred ----------------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence 25999999999999999999999999999999999988776654 234689999999
Q ss_pred CC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc
Q 046226 247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL 325 (434)
Q Consensus 247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 325 (434)
|| .|.+|..|+.|++||+. .......+.+|.++|..++|+.+|-+|++++.|+.|++||++....-..+ .+
T Consensus 358 DgLifgtgt~d~~vkiwdlk------s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--~l 429 (506)
T KOG0289|consen 358 DGLIFGTGTPDGVVKIWDLK------SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--QL 429 (506)
T ss_pred CceEEeccCCCceEEEEEcC------CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee--ec
Confidence 99 89999999999999998 34467788899999999999999999999999999999999865432222 11
Q ss_pred cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226 326 QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403 (434)
Q Consensus 326 ~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 403 (434)
.....+.++.|+ |.+|+.++.|=.|++++-.+ +.+.++..+..|.+..+++.|... .++++++|.|.
T Consensus 430 -~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~---------aq~l~s~smd~ 498 (506)
T KOG0289|consen 430 -DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEH---------AQYLASTSMDA 498 (506)
T ss_pred -cccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeeccc---------ceEEeeccchh
Confidence 122256666665 88999998887777777554 366888899999999999999888 89999999999
Q ss_pred eEEEEec
Q 046226 404 VLKMWRV 410 (434)
Q Consensus 404 ~v~iw~~ 410 (434)
.++++.+
T Consensus 499 ~l~~~a~ 505 (506)
T KOG0289|consen 499 ILRLYAL 505 (506)
T ss_pred heEEeec
Confidence 9998865
No 61
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-32 Score=218.98 Aligned_cols=317 Identities=15% Similarity=0.250 Sum_probs=250.1
Q ss_pred ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEE
Q 046226 81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRV 156 (434)
Q Consensus 81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~v 156 (434)
.+++++.+.||.+.|+.++. ....+.+++.|.+-+||.++++.++..+.+|.+.|+++.|++. .+++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 46678889999999999999 5668999999999999999999999999999999999999986 7889999999999
Q ss_pred eecC------CCCCceee----Eee----eccCC----CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226 157 WRST------WDNGVKHV----KLA----TIPKT----GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI 218 (434)
Q Consensus 157 wd~~------~~~~~~~~----~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 218 (434)
|... .+...... ... ..+.. ...-..+..+...+.+|...|.+..|...++.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 9731 11100000 000 00000 001112334444677899999999999999999999999999
Q ss_pred EEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226 219 KVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL 297 (434)
Q Consensus 219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 297 (434)
.+||+++++.+..+.+|....+.++-+|.. ++++.+.|-+.++||.+ .....+..+.+|...|++..|..+ ..
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-----eaI~sV~VFQGHtdtVTS~vF~~d-d~ 370 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-----EAIQSVAVFQGHTDTVTSVVFNTD-DR 370 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch-----hhcceeeeecccccceeEEEEecC-Cc
Confidence 999999999999999999999999999998 88999999999999988 455567789999999999999876 56
Q ss_pred EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCcee-eEEEeeccccc
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHT-MLAVLVGHRGP 374 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~h~~~ 374 (434)
+++|+.|.+|++||++........+. ...++..++.+ +..++.--++..|++||++...... +...-++|...
T Consensus 371 vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 371 VVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred eeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 88999999999999986655443221 22345555554 4588888888999999998653211 12245689999
Q ss_pred eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
|.|++|..+.. -+-|+++|.|..+.-|++..++
T Consensus 447 V~c~AW~eehp-------~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 447 VTCCAWLEEHP-------ACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeeccccCc-------ccccccccccceeeeeEecccC
Confidence 99999997632 3458999999999999998764
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.7e-32 Score=249.98 Aligned_cols=267 Identities=24% Similarity=0.394 Sum_probs=227.7
Q ss_pred CCccCCCCCCCcccceee-----eEE-EeeccccEEEEEEc--CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE
Q 046226 67 PTAAAGSSSPETSSSYRC-----ISS-VLKKDGQILCIAVG--NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM 138 (434)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~-----~~~-~~~h~~~v~~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 138 (434)
...+.+++.+.++..|.+ +.+ +.||.+.|.++++. +++|++|+.|.++++||..++++...+.+|...|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 556667777777766655 444 89999999999994 9999999999999999999999999999999999999
Q ss_pred EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226 139 EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI 218 (434)
Q Consensus 139 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 218 (434)
...+..+++|+.|.+|++|++.++..+..+. +|..+|+++..+ +.++++|+.|++|
T Consensus 298 ~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~----------------------~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 298 TIDPFLLVSGSRDNTVKVWDVTNGACLNLLR----------------------GHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred EccCceEeeccCCceEEEEeccCcceEEEec----------------------cccccEEEEEec--CCEEEEEecCceE
Confidence 9999999999999999999999777666653 599999999997 8999999999999
Q ss_pred EEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226 219 KVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLL 298 (434)
Q Consensus 219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 298 (434)
++||+.+++++..+.+|...|.++.+.....+++|+.|+.|++||++... ..+..+.+|..-+..+.+ .+++|
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~--~~~~L 426 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLL--RDNFL 426 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh-----hhhhhhcCCccccccccc--cccee
Confidence 99999999999999999999999988865799999999999999998211 677788888888866654 56899
Q ss_pred EEEcCCCeEEEEEcCcccccccccCcccC-cccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQYGGALQG-HTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH 371 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 371 (434)
++++.|+.|++||........ .+.+ |...|.++......+++++.||.+++||++++ .+...+-.+
T Consensus 427 vs~~aD~~Ik~WD~~~~~~~~----~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~---~~~~~l~~~ 493 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEGECLR----TLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSG---TLIRTLLST 493 (537)
T ss_pred EeccccccEEEeecccCceee----eeccCCcccEEEeecCcceEEEEecCCeeEEEecccC---chhhhhhhc
Confidence 999999999999976544333 3444 67888888888778899999999999999998 454444333
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-31 Score=222.93 Aligned_cols=294 Identities=19% Similarity=0.278 Sum_probs=226.3
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCcccce----eeeEEEeeccccEEEEEE--c---CCEEEEEeCCCeEEEecCCCce
Q 046226 53 LHTSPLSSPRHPFNPTAAAGSSSPETSSSY----RCISSVLKKDGQILCIAV--G---NGFIYTGSDSNVIRIWKQPEFT 123 (434)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~--~---~~~l~tg~~dg~i~iwd~~~~~ 123 (434)
.|..-+.+.... +.-+.++++|++.+.| +++.++.||.++|.++++ . ...|++++.|.++++|.++.++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 344455554443 7788999999987765 568889999999999999 2 3369999999999999887654
Q ss_pred eE----eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC----CceeEEEeccccccCc
Q 046226 124 EC----GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG----GAVRNLIVGKDKMMKH 193 (434)
Q Consensus 124 ~~----~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 193 (434)
.. ...++|...|.++...++ .+++|+.|.+|++|+...... ..++-....... ........+...+.+|
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 33 334589999999998886 899999999999999332211 111100000000 0000001111234589
Q ss_pred CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226 194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
..+|.++.|++ ...+++++.|.+|+.||++++..+.++. ....++|+..++.. +|++|+.|..|++||.+.. ..
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~---~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG---DG 334 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCC---CC
Confidence 99999999986 7889999999999999999999988887 45678999999988 9999999999999999833 34
Q ss_pred eEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCc
Q 046226 273 HTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADST 350 (434)
Q Consensus 273 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~ 350 (434)
......+.+|.+.|.++.|+|. ...|++|+.|+++++||++.....+ ..+.+|...|.++.|+ +.++++|+.|.+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl---ydI~~h~DKvl~vdW~~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL---YDIAGHNDKVLSVDWNEGGLIVSGGADNK 411 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc---eeeccCCceEEEEeccCCceEEeccCcce
Confidence 4556788899999999999995 4578899999999999998665443 3567999999999997 559999999999
Q ss_pred EEEEecc
Q 046226 351 SRVWARE 357 (434)
Q Consensus 351 i~iwd~~ 357 (434)
|+|+.-.
T Consensus 412 l~i~~~~ 418 (423)
T KOG0313|consen 412 LRIFKGS 418 (423)
T ss_pred EEEeccc
Confidence 9999654
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-31 Score=212.62 Aligned_cols=266 Identities=18% Similarity=0.265 Sum_probs=213.4
Q ss_pred EEEEEeCCCeEEEecCCC------------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226 104 FIYTGSDSNVIRIWKQPE------------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLA 171 (434)
Q Consensus 104 ~l~tg~~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 171 (434)
.+++|++...|.-+++.- ...+..+..|.+.|++++.+..++++|+.|.+|+|||+........+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll-- 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILL-- 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhccee--
Confidence 367788777776665421 223556788999999999999999999999999999998776665553
Q ss_pred eccCCCCceeEEEeccccccCcCCCeEEEEEecCCC--EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226 172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD--TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248 (434)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 248 (434)
.|.+.|+++.|.+.-. .|++|+.||.|.+|+.....++..+++|.+.|+.++++|.+
T Consensus 81 --------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K 140 (362)
T KOG0294|consen 81 --------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK 140 (362)
T ss_pred --------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc
Confidence 5999999999998765 89999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
+-++.+.|+.+++||+-..... ....+ ....+.+.|+|.|.+++.+..+ .|-+|.+.......+.. .
T Consensus 141 LALsVg~D~~lr~WNLV~Gr~a----~v~~L---~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-----~ 207 (362)
T KOG0294|consen 141 LALSVGGDQVLRTWNLVRGRVA----FVLNL---KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE-----N 207 (362)
T ss_pred eEEEEcCCceeeeehhhcCccc----eeecc---CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh-----c
Confidence 7788999999999998622111 11111 1234459999999998888766 48899876443332221 1
Q ss_pred ccceEEEEe-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 329 THAVMCLAS-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 329 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
...+.|+.| ++..|++|++|+.|.+||..+. .+...+.+|..+|.++.+..+. ++.+|+|+|.||.|++
T Consensus 208 ~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~-------~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 208 PKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNP-------EHEYLVTASSDGFIKV 277 (362)
T ss_pred cccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecC-------CceEEEEeccCceEEE
Confidence 245677777 5789999999999999999986 7889999999999999866442 2789999999999999
Q ss_pred EecCCCC
Q 046226 408 WRVTRPK 414 (434)
Q Consensus 408 w~~~~~~ 414 (434)
||++..+
T Consensus 278 Wd~~~~~ 284 (362)
T KOG0294|consen 278 WDIDMET 284 (362)
T ss_pred EEccccc
Confidence 9998763
No 65
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.2e-31 Score=231.66 Aligned_cols=275 Identities=26% Similarity=0.407 Sum_probs=232.0
Q ss_pred CCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC
Q 046226 49 SPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE 121 (434)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~ 121 (434)
..+.+|..++.+..+.+++..+++++.+..+..|+. ...+..|...+.++.| ++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 346688889999999888889998888888777765 4667889999999999 677999999999999999999
Q ss_pred ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226 122 FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS 199 (434)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (434)
++.+..+..|...|.++.|+++ .+++++.|+.|.+||+...+....+. .|...|.+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------~~~~~i~~ 140 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----------------------GHTDWVNS 140 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----------------------cCCCcEEE
Confidence 8888888899999999999996 55555569999999997554333331 48889999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226 200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT 278 (434)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 278 (434)
++|+|++.++++++.|+.|++||+++++.+..+..|...+.++.|++++ .+++++.|+.|++||++ .......
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~------~~~~~~~ 214 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS------TGKCLGT 214 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECC------CCceecc
Confidence 9999999999988889999999999999888998899999999999999 89999999999999987 2334445
Q ss_pred ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEe
Q 046226 279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWA 355 (434)
Q Consensus 279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd 355 (434)
+..+...+.+++|++++.++++++.||.|++||+...... ..+..|...+.++.+++ ++|++++.||.|++|+
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV----QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE----EEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5567789999999999888888888999999998653322 23447888899999875 7999999999999996
No 66
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.9e-33 Score=236.34 Aligned_cols=257 Identities=15% Similarity=0.218 Sum_probs=217.8
Q ss_pred ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCC-CCCceeeEeeeccCCCCceeEEEeccccccCcCCCe
Q 046226 122 FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTW-DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPI 197 (434)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 197 (434)
.+.+..+.+|+..|.++.|.|. +|++++.|+.|+||++.. +..++.+ .+|..+|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf----------------------~gH~k~V 261 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF----------------------KGHRKPV 261 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh----------------------hcchhhh
Confidence 3456778999999999999994 888999999999999875 3333333 3899999
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEE
Q 046226 198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTL 275 (434)
Q Consensus 198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 275 (434)
.+++|+.+|..|++++.|+.|++||+++|+++..+. ....++|+.|+|++ .+++|+.|+.|+.||++ ..+.
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR------s~kv 334 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR------SGKV 334 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc------chHH
Confidence 999999999999999999999999999999999987 45678999999998 89999999999999999 4556
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226 276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA 355 (434)
Q Consensus 276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 355 (434)
+..+..|-+.|..+.|-++|+++++.+.|+.++||+.+... ..++......|.-+...+.+++.+++.-+.|+.|.+|.
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 77788888999999999999999999999999999986543 23334445567777777778899999999999999999
Q ss_pred ccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 356 REQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
+...-+......+++|.. --..+.|+|| |.+|++|+.||.+.+||.++-+...
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpD---------G~~l~SGdsdG~v~~wdwkt~kl~~ 468 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPD---------GRTLCSGDSDGKVNFWDWKTTKLVS 468 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCC---------CCeEEeecCCccEEEeechhhhhhh
Confidence 877655556667888864 3456899999 9999999999999999999877543
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=217.15 Aligned_cols=288 Identities=17% Similarity=0.266 Sum_probs=225.2
Q ss_pred EEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC------------------ceeEeeccCCCccEEEEEEeCC--E
Q 046226 87 SVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------------------FTECGRLKAKTSMVVAMEVSHD--R 144 (434)
Q Consensus 87 ~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~--~ 144 (434)
.+..|++++.+-+| ||.++|||+.|..|+|.|++. .-.+.++..|...|+++.|+|. .
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 36679999999999 999999999999999999861 1346678889999999999996 8
Q ss_pred EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC
Q 046226 145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR 224 (434)
Q Consensus 145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 224 (434)
|++++.|++|+++|+......+.++. .....+|.++.|+|.|.+|++|....++++||++
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~--------------------~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKV--------------------FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHH--------------------hhccceeeeEeecCCCceEEEecCCCceeEEecc
Confidence 89999999999999976544444322 2366789999999999999999999999999999
Q ss_pred CCeeEEEcc---cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe-ccc-ccCeEEEEEecCCCEE
Q 046226 225 DSKCIETIQ---AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAK-YSPVKTLTLTLDDGLL 298 (434)
Q Consensus 225 ~~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l 298 (434)
+.++...-. .|.+.|+++.+++.+ +.++++.||.|++||-- ..+.+.++ ..| ...|.+..|..+++++
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV------S~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV------SNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc------cHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 988766543 588999999999999 99999999999999844 11122221 233 3478999999999999
Q ss_pred EEEcCCCeEEEEEcCcccccccccCc-ccCcccceEEEEee--CCEEEEecC-CCcEEEEeccCCCceeeEEEeeccccc
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQYGGA-LQGHTHAVMCLASV--ANYVISGSA-DSTSRVWAREQDGRHTMLAVLVGHRGP 374 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~ 374 (434)
++.+.|..+++|.+.+......+... ..+...--+...|+ .+|++.-.+ .+.+.-||.++..+.... --+|.+.
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~--slgHn~a 398 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL--SLGHNGA 398 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--ccCCCCC
Confidence 99999999999999877665555322 11111111233344 456665543 568999999987432222 2489999
Q ss_pred eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
++.+.-+|. +..++||+.|-.+++|--.
T Consensus 399 ~R~i~HSP~---------~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 399 VRWIVHSPV---------EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceEEEeCCC---------CCceeeecccceeeeeeec
Confidence 999999999 8899999999999999743
No 68
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-32 Score=212.16 Aligned_cols=236 Identities=20% Similarity=0.263 Sum_probs=200.6
Q ss_pred ccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCC
Q 046226 91 KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDN 163 (434)
Q Consensus 91 h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~ 163 (434)
-.+.+..++| ..+.+++++.||.++|||+.. ..++..++.|...|.++.|++. .+++++.|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3567889999 578899999999999999643 5678889999999999999984 68888999999999988777
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEE
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINAL 242 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 242 (434)
.+..+. +|...|...+|+|. .+++++++.|+++++||++..-....+..|...|.|+
T Consensus 139 Sv~Tf~----------------------gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~c 196 (311)
T KOG0277|consen 139 SVQTFN----------------------GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCC 196 (311)
T ss_pred ceEeec----------------------CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEee
Confidence 666653 79999999999994 7889999999999999998654444588899999999
Q ss_pred EEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccc
Q 046226 243 VVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 243 ~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
.|+.-. .++||+.|+.|+.||++ ....++..+.+|.-.|+.+.|+|. ...|++++.|-+++|||.......
T Consensus 197 dw~ky~~~vl~Tg~vd~~vr~wDir-----~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~- 270 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVDNLVRGWDIR-----NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA- 270 (311)
T ss_pred cccccCCcEEEecCCCceEEEEehh-----hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh-
Confidence 999755 99999999999999999 445667788999999999999995 568999999999999998643332
Q ss_pred cccCcccCcccceEEEEee---CCEEEEecCCCcEEEEec
Q 046226 320 QYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAR 356 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~ 356 (434)
..+...|+.-+..+.|+ +.++|+++.|+.++||+-
T Consensus 271 --~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 --IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 33556788889888886 779999999999999983
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=224.99 Aligned_cols=282 Identities=16% Similarity=0.221 Sum_probs=230.1
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCccccee--------eeEEEeeccccEEEEEE--cCCEEEEEeCCCe
Q 046226 44 PPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR--------CISSVLKKDGQILCIAV--GNGFIYTGSDSNV 113 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~ 113 (434)
|.+..+.+..|.+.+....|+++++.++++++|.+.-.|. ..+++.+|..+|..+.| |.++|++++.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 4555678899999999999999999999999998855544 46789999999999999 9999999999999
Q ss_pred EEEecCCCceeEeeccC-CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226 114 IRIWKQPEFTECGRLKA-KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM 190 (434)
Q Consensus 114 i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
+++||+.++.....+.. +...+.+++|.|| .+++|+.|+.|..||++.+. ....+.
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~g-------------------- 351 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEG-------------------- 351 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccc--------------------
Confidence 99999999998877653 4678999999998 89999999999999987543 222210
Q ss_pred cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226 191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE 269 (434)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 269 (434)
-....|.+++..+||+++++.+.|..|++++.++...+..+. ...+|+++.++.++ ++++--.+..+++||+.
T Consensus 352 -vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~---- 425 (519)
T KOG0293|consen 352 -VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLE---- 425 (519)
T ss_pred -cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecc----
Confidence 123469999999999999999999999999998766554333 55789999999999 77777889999999987
Q ss_pred cceeEEEEEecccccCe--EEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEE
Q 046226 270 NQLHTLILTLTAKYSPV--KTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVI 343 (434)
Q Consensus 270 ~~~~~~~~~~~~~~~~v--~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~ 343 (434)
....+..+.+|...- -.-||-- +..++++|++|+.|+||+.. ...+...+.||...|.|++|++ .++|
T Consensus 426 --e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~----sgkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 426 --ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI----SGKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred --hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc----CCceeEeecCCcceeeEEecCCCCHHHhh
Confidence 444555666665542 2334433 55899999999999999954 4455567889999999999985 4899
Q ss_pred EecCCCcEEEEeccC
Q 046226 344 SGSADSTSRVWAREQ 358 (434)
Q Consensus 344 s~~~dg~i~iwd~~~ 358 (434)
++++||+||||-...
T Consensus 500 SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCeEEEecCCc
Confidence 999999999997764
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3e-32 Score=228.33 Aligned_cols=283 Identities=18% Similarity=0.274 Sum_probs=230.3
Q ss_pred eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce--eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226 84 CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT--ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW 157 (434)
Q Consensus 84 ~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw 157 (434)
+...+..|.+.|..+.| +...|++|+.|..|++|+....+ .+.++.+..+.|+.+.|.++ .+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 44556779999999999 55999999999999999987665 67778888899999999886 88899999999999
Q ss_pred ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE 237 (434)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 237 (434)
++........+. +|.+.|+++.|......+++|+.|.+|++||+....|.+++. ...
T Consensus 247 nvd~~r~~~TLs----------------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S 303 (459)
T KOG0288|consen 247 NVDSLRLRHTLS----------------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGS 303 (459)
T ss_pred eccchhhhhhhc----------------------ccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccc
Confidence 998766555553 799999999998877779999999999999999988877765 445
Q ss_pred CeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 238 PINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 238 ~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
.+.+|... ...+++|-.|++|++||++ ..........+ +.|+++..++++..|++++.|.++.++|+++...
T Consensus 304 ~cnDI~~~-~~~~~SgH~DkkvRfwD~R------s~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 304 QCNDIVCS-ISDVISGHFDKKVRFWDIR------SADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred cccceEec-ceeeeecccccceEEEecc------CCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 66677666 3378999999999999988 33334444444 4899999999999999999999999999987654
Q ss_pred ccccc--CcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcc
Q 046226 318 QLQYG--GALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEY 393 (434)
Q Consensus 318 ~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~ 393 (434)
...+. ....+|.-.-.++++++.|+++|+.||.|+||++.++ ++...+..... .|++++|+|. |
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~s---------G 443 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPS---------G 443 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCC---------C
Confidence 44332 2223444344556667889999999999999999998 55555554443 5999999998 9
Q ss_pred cEEEEeecCCeEEEEe
Q 046226 394 CTICTGSLDGVLKMWR 409 (434)
Q Consensus 394 ~~l~s~~~Dg~v~iw~ 409 (434)
..|++++.++.+.+|.
T Consensus 444 ~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 444 SGLLSADKQKAVTLWT 459 (459)
T ss_pred chhhcccCCcceEecC
Confidence 9999999999999994
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=8.8e-31 Score=238.80 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=201.3
Q ss_pred eeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeE--------------------eee-------
Q 046226 123 TECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVK--------------------LAT------- 172 (434)
Q Consensus 123 ~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~--------------------~~~------- 172 (434)
...+.+. .|.+.|+++.|++| +||+|+.|+.|+||.+...+...... ...
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 89999999999998 99999999999999986622100000 000
Q ss_pred -ccCCCCceeE----------EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226 173 -IPKTGGAVRN----------LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241 (434)
Q Consensus 173 -~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 241 (434)
....+..... ...+...+.+|.+.|.++.|+. +++|++++.|.+|++|++...+|+..|. |.+.|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 0000000000 0112225778999999999985 5689999999999999999999999997 9999999
Q ss_pred EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
++|+|-. ++++|+-||.||||++. .. .+.....-..-|++++|.|+|+..++|+.+|.+++|+....+...
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~------d~-~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSIS------DK-KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred EEecccCCCcEeecccccceEEeecC------cC-eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 9999966 99999999999999986 22 233334444789999999999999999999999999986544332
Q ss_pred cccC-----cccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc--eeEEEEeecccCCCC
Q 046226 320 QYGG-----ALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP--IRCAIAFLGRFGEET 389 (434)
Q Consensus 320 ~~~~-----~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~ 389 (434)
.... .-..|. .|+++.+. .+.+++.+.|..|||||.++. .++..|+|+... -....|+.+
T Consensus 488 ~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~D------ 557 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSD------ 557 (712)
T ss_pred eeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccC------
Confidence 2211 111233 89999986 346888889999999999776 667777765442 345677777
Q ss_pred CCcccEEEEeecCCeEEEEecCCCC
Q 046226 390 EDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 390 ~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
|++|+++++|..|++|++....
T Consensus 558 ---gk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 558 ---GKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ---CCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999986543
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-30 Score=229.54 Aligned_cols=270 Identities=21% Similarity=0.322 Sum_probs=225.5
Q ss_pred EEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226 98 IAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP 174 (434)
Q Consensus 98 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~ 174 (434)
+.| ..+.|++|. +..|++|+..++........+...|+++.|+++ .|++|..+|.|.|||....+.+..+..
T Consensus 183 ldWss~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~---- 257 (484)
T KOG0305|consen 183 LDWSSANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG---- 257 (484)
T ss_pred hhcccCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC----
Confidence 444 466777776 468999999988866665556889999999986 899999999999999988777766641
Q ss_pred CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE-cccCccCeEEEEEcCCC-eEEE
Q 046226 175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET-IQAHSEPINALVVADDG-VLYS 252 (434)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~s 252 (434)
.|...|-+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+ ++++
T Consensus 258 -----------------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 258 -----------------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred -----------------CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc
Confidence 289999999998 77899999999999999998776555 88899999999999999 9999
Q ss_pred EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEc--CCCeEEEEEcCcccccccccCcccCcc
Q 046226 253 ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGC--TDGYIHYWHKGWFSAQLQYGGALQGHT 329 (434)
Q Consensus 253 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~ 329 (434)
|+.|+.+.|||.. ...+...+..|...|..++|+| ...+||+|+ .|+.|++||.......... ...
T Consensus 319 GgnDN~~~Iwd~~------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-----dtg 387 (484)
T KOG0305|consen 319 GGNDNVVFIWDGL------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-----DTG 387 (484)
T ss_pred CCCccceEeccCC------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----ccC
Confidence 9999999999975 4556677888999999999999 567888864 5999999998644333221 344
Q ss_pred cceEEEEeeCCE--EEE--ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226 330 HAVMCLASVANY--VIS--GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL 405 (434)
Q Consensus 330 ~~v~~~~~~~~~--l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v 405 (434)
..|..+.|+..+ |++ |..++.|.||+..+. ..+..+.+|...|..++++|+ |..|++|+.|.++
T Consensus 388 sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPd---------g~~i~t~a~DETl 455 (484)
T KOG0305|consen 388 SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPD---------GETIVTGAADETL 455 (484)
T ss_pred CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCC---------CCEEEEecccCcE
Confidence 679999998542 443 456789999999986 888999999999999999999 9999999999999
Q ss_pred EEEecCCCC
Q 046226 406 KMWRVTRPK 414 (434)
Q Consensus 406 ~iw~~~~~~ 414 (434)
++|++-...
T Consensus 456 rfw~~f~~~ 464 (484)
T KOG0305|consen 456 RFWNLFDER 464 (484)
T ss_pred EeccccCCC
Confidence 999998753
No 73
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.98 E-value=3.6e-30 Score=229.22 Aligned_cols=280 Identities=21% Similarity=0.365 Sum_probs=234.5
Q ss_pred ceeeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeE--eeccCCCccEEE-EEEeC---CEEEEEEcCCe
Q 046226 81 SYRCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTEC--GRLKAKTSMVVA-MEVSH---DRVYAAYGDGK 153 (434)
Q Consensus 81 ~~~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~-l~~~~---~~l~~~s~dg~ 153 (434)
.++..+.+.+|+..|..+++ ++..+++++.||++++|+-...+.+ ..+.+|.+.|.. ++|.+ .++++|+.|.+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred cceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 46778889999999999999 8888999999999999997554443 446778888877 77775 27999999999
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 233 (434)
|.+|...+......++ +|...|.+++...++. +++|+.|.++++|-. +++...+.
T Consensus 83 i~v~~~~~~~P~~~Lk----------------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~ 137 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLK----------------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ 137 (745)
T ss_pred EEEEecCCCCchhhhh----------------------ccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC
Confidence 9999988776665553 7999999999887777 999999999999975 56777799
Q ss_pred cCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 234 AHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
+|...|.++...|++.+++|+.|..|++|. ......++.+|..-|+.+++-++ ..+++++.||.|++|++.
T Consensus 138 gH~asVWAv~~l~e~~~vTgsaDKtIklWk--------~~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 138 GHTASVWAVASLPENTYVTGSADKTIKLWK--------GGTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred CcchheeeeeecCCCcEEeccCcceeeecc--------CCchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEecc
Confidence 999999999999999999999999999995 34567788899999999999976 457899999999999983
Q ss_pred cccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCC
Q 046226 314 WFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETED 391 (434)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 391 (434)
. +......+|+.-|.+++. ++..++++++|++++||+.. .+.+.+.--...|+++.+.++
T Consensus 209 g-----e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~N-------- 270 (745)
T KOG0301|consen 209 G-----EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLN-------- 270 (745)
T ss_pred C-----ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeC--------
Confidence 2 222355699999999884 46799999999999999876 566666555568999999887
Q ss_pred cccEEEEeecCCeEEEEecCCCC
Q 046226 392 EYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 392 ~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
|. |++|+.||.||||.....+
T Consensus 271 -gD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 271 -GD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred -CC-EEEeccCceEEEEEecccc
Confidence 44 8889999999999987443
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.5e-28 Score=189.26 Aligned_cols=305 Identities=19% Similarity=0.199 Sum_probs=234.6
Q ss_pred CCCCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC------c---------eeEeeccCCCccEE
Q 046226 74 SSPETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------F---------TECGRLKAKTSMVV 136 (434)
Q Consensus 74 ~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------~---------~~~~~~~~~~~~v~ 136 (434)
..+...+.|+++.++. .+..|.+++| .|.+.++|+...+.+|..... + ....+-+.|.+.|+
T Consensus 15 edd~~k~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 15 EDDKEKKHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred cccccccceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE
Confidence 3456678889988775 4667999999 899999999999999875432 1 12234467899999
Q ss_pred EEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC----CCEEE
Q 046226 137 AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS----DDTLY 210 (434)
Q Consensus 137 ~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~ 210 (434)
|.+|+|. .+++|+.|.+|++..++....... ....++.-|.+.|..++|..+ +..|+
T Consensus 94 c~~ws~~geliatgsndk~ik~l~fn~dt~~~~-----------------g~dle~nmhdgtirdl~fld~~~s~~~il~ 156 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSNDKTIKVLPFNADTCNAT-----------------GHDLEFNMHDGTIRDLAFLDDPESGGAILA 156 (350)
T ss_pred EEEecCccCeEEecCCCceEEEEeccccccccc-----------------CcceeeeecCCceeeeEEecCCCcCceEEE
Confidence 9999997 899999999999987654322111 011122359999999999753 45677
Q ss_pred EEe-cCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecc---cccCe
Q 046226 211 SAS-LDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTA---KYSPV 286 (434)
Q Consensus 211 s~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v 286 (434)
+++ .|..|++-|..+|+..+.+.+|.+.|.++--..+-++++|+.|.+|++||++... .....-..+.. ....|
T Consensus 157 s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~--~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 157 SAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNS--CVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccc--eeeeccCcccCCCccccee
Confidence 654 4778899999999999999999999999865545599999999999999998211 11111111111 22578
Q ss_pred EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCC-cee
Q 046226 287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDG-RHT 363 (434)
Q Consensus 287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~-~~~ 363 (434)
.++++.|.|++|++|-.|....+||++..... +.+..|...|.|+.|++. |+++++.|..|++-|+...- ...
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~r~i----q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMI----QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCCcee----eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcC
Confidence 99999999999999999999999999755443 456689999999999865 99999999999999997642 113
Q ss_pred eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
.+.....|.+.+..+.|+|. .--+++.+.|.++.+|.++
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~---------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQ---------DFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecCc---------cceeeeccCcceEEEeccC
Confidence 45566789999999999998 5679999999999999875
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-29 Score=200.53 Aligned_cols=286 Identities=16% Similarity=0.173 Sum_probs=222.7
Q ss_pred CcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc
Q 046226 50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF 122 (434)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~ 122 (434)
.+.+|..++.+....+++..+++.++|.+...|.. +.++.||.++|+|++. +.+.|+||+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999988776654 7889999999999999 7899999999999999999999
Q ss_pred eeEeeccCCCccEEEEEEeCC-EEEEEEc------CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226 123 TECGRLKAKTSMVVAMEVSHD-RVYAAYG------DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG 195 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~-~l~~~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (434)
+.+..++. ..+|..+.|+.+ .++..+. .+.|.++|++...... ....++..+ ..+.+
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~--------~s~ep~~kI-------~t~~s 148 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI--------DSEEPYLKI-------PTPDS 148 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh--------cccCceEEe-------cCCcc
Confidence 99999875 567999999986 4444433 4778999987443210 011111111 14778
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCccee
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLH 273 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 273 (434)
.++.+-|.|-+.+|++|.+||.|.+||++++ +.+...+.|...|+.|.++++. ++++++.|.+-++||.+ ..
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~------tl 222 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR------TL 222 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc------ce
Confidence 9999999999999999999999999999997 4566667899999999999999 99999999999999988 33
Q ss_pred EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc----------cccccCcccCcccceEEEEee--CCE
Q 046226 274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA----------QLQYGGALQGHTHAVMCLASV--ANY 341 (434)
Q Consensus 274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~~--~~~ 341 (434)
..+.++. ...++++.+++|-..+++.|+.....-+--...... ..+.....++|-++|.+++++ |..
T Consensus 223 ~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 223 EVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred eeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 3333333 347999999999777777765433222211111111 112235678999999999986 679
Q ss_pred EEEecCCCcEEEEeccC
Q 046226 342 VISGSADSTSRVWAREQ 358 (434)
Q Consensus 342 l~s~~~dg~i~iwd~~~ 358 (434)
.++|++||.||+.-.+.
T Consensus 302 YsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccCCCCceEEEEEecc
Confidence 99999999999987654
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.8e-30 Score=206.29 Aligned_cols=267 Identities=18% Similarity=0.287 Sum_probs=207.2
Q ss_pred ccceeeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeE
Q 046226 79 SSSYRCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKI 154 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i 154 (434)
..++..+..+..|.++|+|++.++.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.++ .|++|+.||.|
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 34455567788899999999999999999999999999999999999999999999999999886 69999999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 234 (434)
.+|+...-..+..++ +|.+.|+.++++|.+++-++.+.|+.+++||+-.|+.-..++-
T Consensus 110 ~iw~~~~W~~~~slK----------------------~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLK----------------------AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred EEEEcCCeEEeeeec----------------------ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence 999987665555553 6999999999999999999999999999999999886555543
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 235 HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
.. .-+.+.|+|.| +++.++.+ .|-+|.+.. ....... .....+.++.|. ++..|++|..|+.|.+||.+
T Consensus 168 ~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~------A~v~~~i-~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 168 KN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDN------ASVFREI-ENPKRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred CC-cceeeEEcCCCCEEEEEecc-EEEEEeccc------HhHhhhh-hccccceeeeec-CCceEEEecCCceEEEeccC
Confidence 22 23449999999 67776665 588887651 1111111 111345555554 56889999999999999976
Q ss_pred cccccccccCcccCcccceEEEEee----CCEEEEecCCCcEEEEeccCCC--ceeeEEEeeccccceeEEEEee
Q 046226 314 WFSAQLQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRVWAREQDG--RHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
. ......+.+|..+|.++.+- +.+|++++.||.|++||++... ....+..+.. ...++|+...-
T Consensus 238 s----~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~ 307 (362)
T KOG0294|consen 238 S----DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKL 307 (362)
T ss_pred C----CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehh
Confidence 4 33344677999999999864 3499999999999999998652 2234544443 55667766553
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=3.9e-30 Score=240.56 Aligned_cols=297 Identities=19% Similarity=0.219 Sum_probs=228.8
Q ss_pred ccccEEEEEE--cCCEEEEEe--CCCeEEEecCCC------------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCC
Q 046226 91 KDGQILCIAV--GNGFIYTGS--DSNVIRIWKQPE------------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDG 152 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg 152 (434)
+...|.+++. ++..++||+ .|+.++||+.+. .+.+.....|.+.|.|+.|++| +|++|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 4557889998 899999999 899999998642 2344566779999999999998 999999999
Q ss_pred eEEEeecCCCCCceeeEeeeccCCCC-ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226 153 KIRVWRSTWDNGVKHVKLATIPKTGG-AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET 231 (434)
Q Consensus 153 ~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 231 (434)
.|.||+... ....... ...++ .-..-......+.+|...|.+++|+|++.+|++++.|++|.+||..+.+.+..
T Consensus 92 ~v~iW~~~~-~~~~~~f----gs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 92 LVMIWERAE-IGSGTVF----GSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred eEEEeeecc-cCCcccc----cccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 999998763 1110000 00000 00001111223457999999999999999999999999999999999999999
Q ss_pred cccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc------ccCeEEEEEecCCCEEEEEcC-
Q 046226 232 IQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK------YSPVKTLTLTLDDGLLYGGCT- 303 (434)
Q Consensus 232 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~- 303 (434)
+++|...|..+.|.|-| +|++-+.|++|++|++.. ......+..+ ......+.|+|||++|++.-.
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d------w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD------WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEccc------ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 99999999999999999 999999999999998662 2233332222 235788999999999998743
Q ss_pred ---CCeEEEEEcCcccccccccCcccCcccceEEEEeeC-------C------------EEEEecCCCcEEEEeccCCCc
Q 046226 304 ---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-------N------------YVISGSADSTSRVWAREQDGR 361 (434)
Q Consensus 304 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~------------~l~s~~~dg~i~iwd~~~~~~ 361 (434)
-..+.|.+- ..+.....+.||..++.++.|++ + .+|+|+.|++|-||.....+.
T Consensus 241 n~~~~~~~IieR----~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 241 NGGKSTIAIIER----GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred cCCcceeEEEec----CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 346778773 44555567789999999999851 1 678999999999999866532
Q ss_pred eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
.+....-....|.++.|+|+ |..|..+|.||+|.+..++..
T Consensus 317 --l~vi~~lf~~SI~DmsWspd---------G~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 317 --LFVIHNLFNKSIVDMSWSPD---------GFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --hhhhhhhhcCceeeeeEcCC---------CCeEEEEecCCeEEEEEcchH
Confidence 22222334668999999999 899999999999999999864
No 78
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.9e-29 Score=228.49 Aligned_cols=260 Identities=17% Similarity=0.223 Sum_probs=186.7
Q ss_pred EEEcCCEEEEEeCCCeEEEecCCCceeE-------------eeccCCCccEEEEEEeC-C--EEEEEEcCCeEEEeecCC
Q 046226 98 IAVGNGFIYTGSDSNVIRIWKQPEFTEC-------------GRLKAKTSMVVAMEVSH-D--RVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~l~~~~-~--~l~~~s~dg~i~vwd~~~ 161 (434)
.++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| + .|++|+.|++|++||+..
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~ 107 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPE 107 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCC
Confidence 3345555666666666666664333222 13678999999999998 4 899999999999999875
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN 240 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 240 (434)
....... ...+. .+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+..|...|.
T Consensus 108 ~~~~~~~--------~~~l~-------~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 108 EGLTQNI--------SDPIV-------HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred Ccccccc--------CcceE-------EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 4321100 00111 223799999999999985 6899999999999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccC-eEEEEEecCCCEEEEEc----CCCeEEEEEcCc
Q 046226 241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP-VKTLTLTLDDGLLYGGC----TDGYIHYWHKGW 314 (434)
Q Consensus 241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~ 314 (434)
+++|++++ +|++++.|+.|++||++ .......+..|... ...+.|.+++..+++++ .|+.|++||++.
T Consensus 173 sla~spdG~lLatgs~Dg~IrIwD~r------sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKDKKLNIIDPR------DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEEEECCCCEEEEecCCCEEEEEECC------CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 99999999 99999999999999998 22344455666554 45677888877777654 479999999975
Q ss_pred ccccccccCcccCc-ccceEEEEe--eCCEEEEec-CCCcEEEEeccCCCceeeEEEee-ccccceeEEEEeecc
Q 046226 315 FSAQLQYGGALQGH-THAVMCLAS--VANYVISGS-ADSTSRVWAREQDGRHTMLAVLV-GHRGPIRCAIAFLGR 384 (434)
Q Consensus 315 ~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 384 (434)
....... ...+ ...+....+ ++++|++++ .|+.|++||+.++. .+.... .+..++..++|.|..
T Consensus 247 ~~~p~~~---~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 247 MASPYST---VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCCceeE---eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCCCCcceEecccc
Confidence 4433221 1112 223333334 577888777 59999999999873 333332 355678889999873
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.5e-29 Score=216.56 Aligned_cols=303 Identities=14% Similarity=0.265 Sum_probs=226.1
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee----Eeecc-CCCccEEEEEEeCC--EEEEEEcCC
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE----CGRLK-AKTSMVVAMEVSHD--RVYAAYGDG 152 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~----~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg 152 (434)
..+-..+.+|+..|.++++ .|-.|++|+.|.+|++||+..... ...+. .....|.+++|++. .|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 4445668899999999999 799999999999999999865321 22222 23457899999985 888889999
Q ss_pred eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCe-eEE
Q 046226 153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSK-CIE 230 (434)
Q Consensus 153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~-~~~ 230 (434)
..+|+|-......... .....++++. ...+|...++|.+|+|.. ..|++++.||++++||++..+ .++
T Consensus 237 qakl~DRdG~~~~e~~------KGDQYI~Dm~----nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFS------KGDQYIRDMY----NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ceeEEccCCceeeeee------ccchhhhhhh----ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 9999996644333332 2222233322 235899999999999975 568899999999999997643 333
Q ss_pred Ecc-----cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc--CeEEEEEecCCCEEEEEc
Q 046226 231 TIQ-----AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS--PVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 231 ~~~-----~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~ 302 (434)
.++ +..-+++.++|++++ +|++|..||.|.+||.. .............|.. .|++|.|+++|++|++-+
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~---~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKG---SRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecC---CcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 332 234478999999999 99999999999999976 2223334445566766 899999999999999999
Q ss_pred CCCeEEEEEcCcccccccccCccc-CcccceEEEEeeCCEEEEecC------CCcEEEEeccCCCceeeEEEeeccccce
Q 046226 303 TDGYIHYWHKGWFSAQLQYGGALQ-GHTHAVMCLASVANYVISGSA------DSTSRVWAREQDGRHTMLAVLVGHRGPI 375 (434)
Q Consensus 303 ~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v 375 (434)
.|+.+++||++..+..+....-+. .....=.|++++.++|++|.. .|.+.+||..+- ..++.+.-....|
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSv 460 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASV 460 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceE
Confidence 999999999987765544322221 222223455666778888864 568999998876 6777777778889
Q ss_pred eEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226 376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~ 409 (434)
..+.|+|. -+.|..|+.||+++++=
T Consensus 461 v~~~Whpk---------LNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 461 VRCLWHPK---------LNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEeecch---------hhheeeecCCCceEEEE
Confidence 99999998 67788888899999874
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.8e-31 Score=206.29 Aligned_cols=278 Identities=17% Similarity=0.264 Sum_probs=226.2
Q ss_pred CcccccCCCCCCCC---CCCCCccCCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecC
Q 046226 50 PISLHTSPLSSPRH---PFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQ 119 (434)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~ 119 (434)
.-.+|..++-...+ .+++-.+.++++|.. -.+..=|.+|.+|.++|+.... +....|+++.|=+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 34566666644333 245556666766644 3455669999999999999999 5567788899999999999
Q ss_pred CCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCe
Q 046226 120 PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPI 197 (434)
Q Consensus 120 ~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 197 (434)
-++..+..+. |..-|.+++|+.| +|++|+.+..++|||++..+... .++.+|.+.|
T Consensus 89 ~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App---------------------~E~~ghtg~I 146 (334)
T KOG0278|consen 89 VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP---------------------KEISGHTGGI 146 (334)
T ss_pred hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc---------------------hhhcCCCCcc
Confidence 9999988876 7888999999987 89999999999999987554321 1234799999
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226 198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLIL 277 (434)
Q Consensus 198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 277 (434)
..+.|....+.|++...|++|++||.++++.++++. ...+|+++.++++|.+++....+.|.+||.. ....+.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdak------sf~~lK 219 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAK------SFGLLK 219 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccc------ccccee
Confidence 999999999999999999999999999999999987 5678999999999988888888999999987 222332
Q ss_pred EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEe
Q 046226 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWA 355 (434)
Q Consensus 278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd 355 (434)
.+. ....|.+..++|+...+++|++|..++.||..+......+ .++|.++|.|+.|+ |...++|++||+|++|.
T Consensus 220 s~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 220 SYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred ecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 222 2356889999999999999999999999999776554432 46999999999986 66999999999999999
Q ss_pred ccCCC
Q 046226 356 REQDG 360 (434)
Q Consensus 356 ~~~~~ 360 (434)
+..++
T Consensus 296 t~~~~ 300 (334)
T KOG0278|consen 296 TTPGK 300 (334)
T ss_pred ecCCC
Confidence 87763
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-29 Score=214.13 Aligned_cols=276 Identities=16% Similarity=0.269 Sum_probs=220.3
Q ss_pred cccEEEEEEc---C-CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc
Q 046226 92 DGQILCIAVG---N-GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV 165 (434)
Q Consensus 92 ~~~v~~~~~~---~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~ 165 (434)
.++|.+++|. . ++.+|++ -.|.||+..+......+......|.++.|..| .+++|...|.|+|+|..+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 4568888882 2 4444444 47999999888888878778889999999977 6666677899999996654334
Q ss_pred eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226 166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV 244 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 244 (434)
+.+ .+|..+|..+.|+|.+ ..|++|++|+.+++||+.+......+.+|++.|.|.+|
T Consensus 104 R~~----------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 104 RQL----------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred HHH----------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 443 3799999999999965 56778888999999999998877789999999999999
Q ss_pred cCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc
Q 046226 245 ADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG 322 (434)
Q Consensus 245 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 322 (434)
+|.. .+++|+.||.|++||++... ..+.. ..|..+|.++.+-|.|..+++++ ...|++||+..+....
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~-----~~v~e-lnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll--- 231 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLT-----SRVVE-LNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL--- 231 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCC-----ceeEE-ecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh---
Confidence 9876 89999999999999998221 22222 35888999999999999999886 4579999996443332
Q ss_pred CcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226 323 GALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400 (434)
Q Consensus 323 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 400 (434)
.....|...|+|+.+. +..|++|+-|+.+++||+.+- +.+..+. -.++|.+++.+|+ ++.++.|-
T Consensus 232 ~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~d---------d~t~viGm 298 (487)
T KOG0310|consen 232 TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPD---------DQTVVIGM 298 (487)
T ss_pred hhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCC---------CceEEEec
Confidence 2344599999999986 479999999999999997664 5665553 4789999999998 89999999
Q ss_pred cCCeEEEEecCCCC
Q 046226 401 LDGVLKMWRVTRPK 414 (434)
Q Consensus 401 ~Dg~v~iw~~~~~~ 414 (434)
.||.+.+=+....+
T Consensus 299 snGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 299 SNGLVSIRRREVKK 312 (487)
T ss_pred ccceeeeehhhccc
Confidence 99999887655443
No 82
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.1e-28 Score=225.44 Aligned_cols=252 Identities=15% Similarity=0.172 Sum_probs=187.6
Q ss_pred EeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC-ceeeEeeeccCCCCceeEE
Q 046226 108 GSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG-VKHVKLATIPKTGGAVRNL 183 (434)
Q Consensus 108 g~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (434)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ .|++|+.|+.|++||+..... .... ...+.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--------~~p~~-- 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--------KDPQC-- 119 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--------ccceE--
Confidence 677899999998887888889999999999999984 899999999999999975432 1100 00011
Q ss_pred EeccccccCcCCCeEEEEEecCCCE-EEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226 184 IVGKDKMMKHMGPITSIAINVSDDT-LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV 261 (434)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i 261 (434)
.+.+|...|.+++|+|++.. |++++.|++|++||+++++.+..+. |...|.+++|+++| +|++++.|+.|++
T Consensus 120 -----~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 120 -----ILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred -----EeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 12369999999999999876 4688999999999999998777775 56789999999999 8888999999999
Q ss_pred EecccccCcceeEEEEEecccccCeEEE-----EEecCCCEEEEEcCCC----eEEEEEcCcccccccccCcccCcccce
Q 046226 262 WRRYFYSENQLHTLILTLTAKYSPVKTL-----TLTLDDGLLYGGCTDG----YIHYWHKGWFSAQLQYGGALQGHTHAV 332 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~v 332 (434)
||++ .......+.+|.+.+... .|++++.+|++++.|+ .|+|||++........ ..+..+...+
T Consensus 194 wD~R------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-~~ld~~~~~L 266 (568)
T PTZ00420 194 IDPR------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-MSIDNASAPL 266 (568)
T ss_pred EECC------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-EEecCCccce
Confidence 9998 233445667777654433 3457888999887764 7999999753332221 1222333333
Q ss_pred EEEE-e-eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecc
Q 046226 333 MCLA-S-VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGR 384 (434)
Q Consensus 333 ~~~~-~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 384 (434)
..+. . ++.++++|+.|+.|++|++..+ ....+..+. +..++.+++|.|.+
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~-~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLG-SIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCC-cEEeecccc-cCCCccceEEcccc
Confidence 2221 1 3678999999999999999875 233444443 67788999999985
No 83
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=3.3e-29 Score=201.47 Aligned_cols=286 Identities=17% Similarity=0.227 Sum_probs=222.4
Q ss_pred eeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCce------------eE---eeccCCCccEEEEEEeCC---EEEE
Q 046226 89 LKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFT------------EC---GRLKAKTSMVVAMEVSHD---RVYA 147 (434)
Q Consensus 89 ~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~------------~~---~~~~~~~~~v~~l~~~~~---~l~~ 147 (434)
..|.|.|.++.. .|+++++|+.||.|.+||+++.. ++ ..-.+|.-.|.++.|.|- .+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 448999999999 79999999999999999997532 10 112357789999999883 6777
Q ss_pred EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---CCEEEEEecCCcEEEEEcC
Q 046226 148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---DDTLYSASLDKTIKVWRIR 224 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~ 224 (434)
++.|.+++|||..+-+....++ ..+.|.+-+++|- ..++++|..|-.|++.|+.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-----------------------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-----------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccccceEEEeecccceeeEEee-----------------------cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 8889999999998776666553 5566777777763 4578889999999999999
Q ss_pred CCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccC---------cceeEEEEEecccccCeEEEEEec
Q 046226 225 DSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSE---------NQLHTLILTLTAKYSPVKTLTLTL 293 (434)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~ 293 (434)
+|.+-+.+.+|.+.|.++.|+|.. .|++|+.||.|++||++...+ ............|.+.+..++|..
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 999999999999999999999988 899999999999999983211 011122234567888999999999
Q ss_pred CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce-EE--E-EeeCCEEEEecCCCcEEEEeccCCCceeeEEEee
Q 046226 294 DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-MC--L-ASVANYVISGSADSTSRVWAREQDGRHTMLAVLV 369 (434)
Q Consensus 294 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~--~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 369 (434)
++.++++.+.|..+++|+...+.......... .|...+ .. + ..+...++---.++.+.++++-.+ ..+..+.
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg---s~ir~l~ 332 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG---SFVRRLS 332 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccc-cccccccceEEEeecccceEEEEecCCeEEEEEccCc---eEEEeee
Confidence 99999999999999999987665544332221 111110 11 1 122334444445689999999888 7888899
Q ss_pred ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226 370 GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 370 ~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
.|-..|.|.++-|+ -+...+|..|+.|..|-.
T Consensus 333 ~h~k~i~c~~~~~~---------fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 333 THLKRINCAAYRPD---------FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cccceeeEEeecCc---------hhhhhccccCCccccccc
Confidence 99889999999888 778999999999999987
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=217.40 Aligned_cols=290 Identities=16% Similarity=0.258 Sum_probs=217.2
Q ss_pred CccccccccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccCCCC-CCCcccceeeeEEEeeccccEEEEEE--
Q 046226 24 STFLRSISTKEPSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSS-SPETSSSYRCISSVLKKDGQILCIAV-- 100 (434)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~-- 100 (434)
.+||++ ...+...++...-++-..+|.+|.+.....+.. ..-...+...+.++......|.+++|
T Consensus 11 ~~~w~~------------~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 11 IRYWRQ------------ETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS 78 (487)
T ss_pred chhhhh------------hcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeec
Confidence 567777 333445454455555556666655543222211 00111222233445556788999999
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
||.+||+|...|.|+|||+.+...+..+++|+.+|..+.|+|. .+++|+.|+.+++||+.+... ...
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~-------- 148 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAE-------- 148 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEE--------
Confidence 8999999999999999998887788889999999999999995 788889999999999987653 111
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEEEe
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYSAS 254 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s~~ 254 (434)
+.+|.+.|.|.+|+|... .+++|+.||.|++||++.. ..+.++. |..+|..+.+-|.| .+++++
T Consensus 149 ------------l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 149 ------------LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred ------------ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC
Confidence 137999999999999654 7889999999999999887 5666665 99999999999998 666665
Q ss_pred CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226 255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC 334 (434)
Q Consensus 255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 334 (434)
. ..|++||+. .-.+.......|...|+|+++..++..|++|+-|+.|++||+...+..... .-.++|.+
T Consensus 216 G-n~vkVWDl~-----~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-----~~~~pvLs 284 (487)
T KOG0310|consen 216 G-NSVKVWDLT-----TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW-----KYPGPVLS 284 (487)
T ss_pred C-CeEEEEEec-----CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee-----ecccceee
Confidence 4 579999987 223344455559999999999999999999999999999997644433322 34468888
Q ss_pred EEee--CCEEEEecCCCcEEEEeccCC
Q 046226 335 LASV--ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 335 ~~~~--~~~l~s~~~dg~i~iwd~~~~ 359 (434)
++.+ ++.++.|-.||.+.+=+....
T Consensus 285 iavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred EEecCCCceEEEecccceeeeehhhcc
Confidence 8776 479999999998887755443
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=211.59 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=232.4
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCcccceeee-------------EEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226 51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI-------------SSVLKKDGQILCIAV--GNGFIYTGSDSNVIR 115 (434)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~ 115 (434)
-.+.++-+.+++|++++..+.+++.|+.+..|+-. ..|.-|+++|.|++| |...||+|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 34566778899999999999999999887776653 346778999999999 899999999999999
Q ss_pred EecCCCceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226 116 IWKQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK 192 (434)
Q Consensus 116 iwd~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (434)
||.+.+|.++.++. +|+..|+|+.|+.| .+++++.|.++++.-+..++..+.++ +
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----------------------G 346 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----------------------G 346 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc----------------------C
Confidence 99999999999987 89999999999987 89999999999999999888887774 8
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC--eEEEEeCCCeEEEEeccccc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG--VLYSASDDATVRVWRRYFYS 268 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~ 268 (434)
|...|+...|.++|..+++++.||+|++|+..+.+|+.+++. ...+|+.+...|.+ .++.|...++|.+-++.
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q--- 423 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ--- 423 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---
Confidence 999999999999999999999999999999999999999875 34578888888877 89999999999999875
Q ss_pred CcceeEEEEEe---cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEE
Q 046226 269 ENQLHTLILTL---TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVI 343 (434)
Q Consensus 269 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 343 (434)
.+.+..+ ....+...+.+++|.|.++++.++|+.++.|.+..+ .+...+.-|...+..++-. .+.++
T Consensus 424 ----GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG----~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 424 ----GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG----KLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred ----ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC----ceeeeeecccccccccccCcccchhh
Confidence 2233332 233456677889999999999999999999987533 3334566788888888754 67999
Q ss_pred EecCCCcEEEEe
Q 046226 344 SGSADSTSRVWA 355 (434)
Q Consensus 344 s~~~dg~i~iwd 355 (434)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999994
No 86
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=200.58 Aligned_cols=303 Identities=18% Similarity=0.191 Sum_probs=219.1
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEe----eccCCCccEEEEEEeCC---EEEEEEcCCeEE
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG----RLKAKTSMVVAMEVSHD---RVYAAYGDGKIR 155 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~ 155 (434)
+.+|++|.+.|++++| +|++|+|++.|++|+||++.+..... +....-+.-+.+.|.|| .++.+-....++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999 99999999999999999997743211 11112234678899998 455556677899
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH 235 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 235 (434)
+|.+...+. ........+. .....-..|.-.+..+-....+.+|++++.|..|.+|++. |+.+..+...
T Consensus 159 vyk~~K~~d-G~~~~~~v~~---------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 159 VYKLVKKTD-GSGSHHFVHI---------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEeeeccc-CCCCcccccc---------cccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 997653322 0000000000 0000112477778888888889999999999999999998 9999999888
Q ss_pred ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce--eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL--HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
...-+..+++|+| ++++++..-.|++|.+-....... ......+.+|...|..++|+++...+++.+.||+++|||.
T Consensus 228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 8888889999999 888999999999998764443332 2335678899999999999999999999999999999997
Q ss_pred CcccccccccCc-------cc--CcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 313 GWFSAQLQYGGA-------LQ--GHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 313 ~~~~~~~~~~~~-------~~--~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
+-.....+-... +. +....-..++++|+.|+... ...+++|..+.++...++. ..|.+.|.+++|+++
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--DIHSTTISSISYSSD 384 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH--HhhcCceeeEEecCC
Confidence 643222111111 11 11112345566677776654 5689999999875443333 368999999999999
Q ss_pred ccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 384 RFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 384 ~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
|++++|+| |..+++..-.
T Consensus 385 ---------g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 385 ---------GKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred ---------CcEEeeec-ceeeeeecCC
Confidence 99999997 6788887633
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.3e-30 Score=227.15 Aligned_cols=271 Identities=18% Similarity=0.342 Sum_probs=218.2
Q ss_pred cCCEEEEEeCCCeEEEecCCCce------eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFT------ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT 172 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~ 172 (434)
.+++|+|||.||.|++|++.... ....++.|...|+++....+ .|++++.|-+|++|+...+......
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s---- 111 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS---- 111 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh----
Confidence 67899999999999999875422 36778899999999988765 8999999999999998765311111
Q ss_pred ccCCCCceeEEEeccccccCcCCCeEEEEE-ecCCCEEEEEecCCcEEEEEcCCCe--eEE--------Ecc-cCccCeE
Q 046226 173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAI-NVSDDTLYSASLDKTIKVWRIRDSK--CIE--------TIQ-AHSEPIN 240 (434)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~--~~~--------~~~-~~~~~v~ 240 (434)
.+..|.+.|.|+++ -++..++++|+-|+.|.+||++++. .+. .+. ++...|+
T Consensus 112 ----------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 112 ----------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred ----------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 12369999999999 7788899999999999999999772 222 223 6888999
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
+++.++.+ .+++|+..+.+++||.+ ....+..+.+|...|..+..++||..+++++.||+|++||+...
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDpr------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---- 245 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPR------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---- 245 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccc------cccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----
Confidence 99999999 99999999999999988 55566777899999999999999999999999999999998643
Q ss_pred cccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226 320 QYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC 397 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 397 (434)
....++..|...|+++..+.. ++++|+.||.|..=|+++......+. ....+|..+..... .+-+.
T Consensus 246 rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic---k~daPv~~l~~~~~---------~~~~W 313 (735)
T KOG0308|consen 246 RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC---KEDAPVLKLHLHEH---------DNSVW 313 (735)
T ss_pred ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee---cCCCchhhhhhccc---------cCCce
Confidence 344557789989999988765 89999999999999999863222222 23556666766644 33457
Q ss_pred EeecCCeEEEEecCCC
Q 046226 398 TGSLDGVLKMWRVTRP 413 (434)
Q Consensus 398 s~~~Dg~v~iw~~~~~ 413 (434)
++..|+.|+-|.....
T Consensus 314 vtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 314 VTTTDSSIKRWKLEPD 329 (735)
T ss_pred eeeccccceecCCccc
Confidence 7888999999987643
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3e-30 Score=216.42 Aligned_cols=284 Identities=19% Similarity=0.238 Sum_probs=230.8
Q ss_pred CCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCCEEEEEeCCC
Q 046226 42 YSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNGFIYTGSDSN 112 (434)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg 112 (434)
.-|.+....+..|...+....+-++...+++++.|..++.|+. +.+|.|-.+.|+.+.| ++..+++++.|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence 3455666778888899999999999999999999999888876 4567888899999999 789999999999
Q ss_pred eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM 190 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
.+++|++...+...++.+|.+.|+++.|... .+++|+.|.+|++||+....+.+.+.
T Consensus 242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--------------------- 300 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--------------------- 300 (459)
T ss_pred ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc---------------------
Confidence 9999999999999999999999999999775 58999999999999998765555442
Q ss_pred cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226 191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE 269 (434)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 269 (434)
....+.+|+.+ ...+++|-.|+.|++||.++..+......+. .|+++..+.++ .+.+++.|.++.+.|++...-
T Consensus 301 --~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 301 --PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred --ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 33445666654 5678899999999999999999998888665 99999999999 888899999999999983222
Q ss_pred cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC
Q 046226 270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA 347 (434)
Q Consensus 270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 347 (434)
...........+ ...+.+.|+|++.|+++|+.||.|+||++.+.+..... ........|++++|+ |..|++++.
T Consensus 376 ~~~~sA~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l--~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 376 RQTFSAEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL--SLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred EEEeeccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe--ccCCCCcceEEEEEcCCCchhhcccC
Confidence 111111111222 34888999999999999999999999998765544332 232333379999997 779999999
Q ss_pred CCcEEEEe
Q 046226 348 DSTSRVWA 355 (434)
Q Consensus 348 dg~i~iwd 355 (434)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 99999993
No 89
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.1e-29 Score=214.20 Aligned_cols=251 Identities=18% Similarity=0.255 Sum_probs=204.7
Q ss_pred EeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCce----------eEeeccCCCccEEEEEEeCC---EEEEEEcC
Q 046226 88 VLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFT----------ECGRLKAKTSMVVAMEVSHD---RVYAAYGD 151 (434)
Q Consensus 88 ~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~l~~~~~---~l~~~s~d 151 (434)
...|.+.|+.+.+ +..++|+++..+.|.|||..+.. +-.++.+|.+.-++|.|++. .|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3459999999999 78899999999999999985421 22367889888888999985 89999999
Q ss_pred CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcC--CCee
Q 046226 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIR--DSKC 228 (434)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~--~~~~ 228 (434)
+.|++||+......... ......+.+|...|..++|++- ..+|++++.|+.+.|||++ +.++
T Consensus 200 ~~i~lwdi~~~~~~~~~---------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~ 264 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKV---------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP 264 (422)
T ss_pred CcEEEEeccccccCCcc---------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC
Confidence 99999999755432100 0111123479999999999985 5678899999999999999 5667
Q ss_pred EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCC
Q 046226 229 IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDG 305 (434)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 305 (434)
.....+|.+.|+|++|+|-+ .|++|+.|++|++||+| ........+.+|...|..+.|+|. ...|++++.|+
T Consensus 265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR-----nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~ 339 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR-----NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDR 339 (422)
T ss_pred cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeech-----hcccCceeccCCCcceEEEEeCCCCCceeEecccCC
Confidence 77888999999999999977 89999999999999999 444577889999999999999995 56889999999
Q ss_pred eEEEEEcCccccc----------ccccCcccCcccceEEEEeeCC---EEEEecCCCcEEEEeccC
Q 046226 306 YIHYWHKGWFSAQ----------LQYGGALQGHTHAVMCLASVAN---YVISGSADSTSRVWAREQ 358 (434)
Q Consensus 306 ~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~ 358 (434)
.+.+||+...... .++...-.||...|..++|+++ .+++.++|+.+.||++..
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999998754332 2233455699999999999865 899999999999998864
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.6e-29 Score=212.17 Aligned_cols=262 Identities=19% Similarity=0.322 Sum_probs=212.1
Q ss_pred EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee-c-cCCCCceeEEEeccccccCcCCCeEEE
Q 046226 125 CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT-I-PKTGGAVRNLIVGKDKMMKHMGPITSI 200 (434)
Q Consensus 125 ~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 200 (434)
...+..|.-+|.+++++++ +.++++.||+|.-|++.++.....+--.. . ...+..... .. .+|...+.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~-----~r-~~h~keil~~ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKE-----SR-KGHVKEILTL 208 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCc-----cc-ccccceeEEE
Confidence 4556779999999999998 99999999999999998887553321110 0 001111000 00 2699999999
Q ss_pred EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226 201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL 279 (434)
Q Consensus 201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 279 (434)
+.++|+++|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-... .+++++.|+.|++|++. ....+.++
T Consensus 209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~------~~s~vetl 282 (479)
T KOG0299|consen 209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID------QLSYVETL 282 (479)
T ss_pred EEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh------HhHHHHHH
Confidence 999999999999999999999999999999999999999999998766 99999999999999987 45566778
Q ss_pred cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCCCcEEEEeccC
Q 046226 280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~ 358 (434)
.+|...|..|....-++.+-+|+.|+++++|++...... .+.++.+.+-|++| +..++++|+.||.|.+|++..
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-----ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-----IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEecccccee-----eeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence 899999999998888888888999999999998432222 45588889999988 577999999999999999987
Q ss_pred CCceeeEEEe-ecc-----------ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 359 DGRHTMLAVL-VGH-----------RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 359 ~~~~~~~~~~-~~h-----------~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
.+ ++... .+| ..+|++++..|. ..++++|+.+|.|++|.+..+-.
T Consensus 358 Kk---plf~~~~AHgv~~~~~~~~~~~Witsla~i~~---------sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 358 KK---PLFTSRLAHGVIPELDPVNGNFWITSLAVIPG---------SDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cC---ceeEeeccccccCCccccccccceeeeEeccc---------CceEEecCCCCceEEEEecCCcc
Confidence 63 33221 122 237999999998 89999999999999999998844
No 91
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.2e-28 Score=222.58 Aligned_cols=242 Identities=19% Similarity=0.248 Sum_probs=182.7
Q ss_pred EEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeeccCCCccEEEEEEeCC---EEEEEEcCCe
Q 046226 87 SVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRLKAKTSMVVAMEVSHD---RVYAAYGDGK 153 (434)
Q Consensus 87 ~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~ 153 (434)
.+.+|.+.|++++| ++++|++|+.|++|++||+.+. ..+..+.+|...|.+++|+|+ .|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 47889999999999 5789999999999999999764 346678899999999999984 7899999999
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 233 (434)
|++||+..+.....+ .+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.
T Consensus 150 VrIWDl~tg~~~~~l----------------------~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 150 VNVWDVERGKAVEVI----------------------KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEEECCCCeEEEEE----------------------cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 999999876543333 2589999999999999999999999999999999999999998
Q ss_pred cCccC-eEEEEEcCCC-eEEEEe----CCCeEEEEecccccCcceeEEEEEec-ccccCeEEEEEecCCCEEEEEc-CCC
Q 046226 234 AHSEP-INALVVADDG-VLYSAS----DDATVRVWRRYFYSENQLHTLILTLT-AKYSPVKTLTLTLDDGLLYGGC-TDG 305 (434)
Q Consensus 234 ~~~~~-v~~~~~~~~~-~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg 305 (434)
+|.+. +..+.|.+++ .+++++ .|+.|++||++... ....... .....+....|++++++|++++ .|+
T Consensus 208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 88765 3467788776 666554 47999999998222 1112222 2234556667899999998887 599
Q ss_pred eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226 306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 358 (434)
.|++||+......... . ..+..++.++++.+++.+=...--..|+|.+..
T Consensus 283 ~Iriwdl~~~~~~~~~--~-~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 283 NIRCFELMNERLTFCS--S-YSSVEPHKGLCMMPKWSLDTRKCEIARFYALTY 332 (493)
T ss_pred eEEEEEeeCCceEEEe--e-ccCCCCCcceEecccccccccceeeeEEEEecC
Confidence 9999999754422211 1 123445666766665544444444557777654
No 92
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1e-27 Score=222.06 Aligned_cols=246 Identities=13% Similarity=0.179 Sum_probs=180.8
Q ss_pred eeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCce--------eEeeccCCCccEEEEEEeCC---EEEEEE
Q 046226 84 CISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEFT--------ECGRLKAKTSMVVAMEVSHD---RVYAAY 149 (434)
Q Consensus 84 ~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~l~~~~~---~l~~~s 149 (434)
.+..+.+|.+.|.+++| ++++|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|+ .+++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 57788999999999999 37899999999999999997632 33467889999999999996 457889
Q ss_pred cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE
Q 046226 150 GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI 229 (434)
Q Consensus 150 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 229 (434)
.|+.|++||+..+.....+ .|...|.+++|+++|.+|++++.|+.|++||+++++.+
T Consensus 146 ~DgtIrIWDl~tg~~~~~i-----------------------~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQI-----------------------NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred CCCeEEEEECCCCcEEEEE-----------------------ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 9999999999876544333 25678999999999999999999999999999999999
Q ss_pred EEcccCccCeEEEE-----EcCCC-eEEEEeCCC----eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEE
Q 046226 230 ETIQAHSEPINALV-----VADDG-VLYSASDDA----TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLY 299 (434)
Q Consensus 230 ~~~~~~~~~v~~~~-----~~~~~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 299 (434)
..+.+|.+.+.+.. |++++ +|++++.|+ .|++||++.... ......+..+.+.+......+++.+++
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~---pl~~~~ld~~~~~L~p~~D~~tg~l~l 279 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS---ALVTMSIDNASAPLIPHYDESTGLIYL 279 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC---ceEEEEecCCccceEEeeeCCCCCEEE
Confidence 99999987654433 34666 888877764 799999982211 111122333333333343445688999
Q ss_pred EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226 300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 358 (434)
+|..|+.|++|++.... ......+ .+..++.+++|.++..+=...--..|+|.+..
T Consensus 280 sGkGD~tIr~~e~~~~~--~~~l~~~-~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl~~ 335 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLGS--IRKVNEY-KSCSPFRSFGFLPKQICDVYKCEIGRVYKNEN 335 (568)
T ss_pred EEECCCeEEEEEccCCc--EEeeccc-ccCCCccceEEccccccCchhhhHhHHhhhcC
Confidence 99999999999986432 2222222 25567778888776554443334556666654
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=4e-28 Score=196.59 Aligned_cols=269 Identities=15% Similarity=0.128 Sum_probs=211.9
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCcee
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
..+.|..+.| .++.|++++.||.+++||+....+...++ |..++.+++|.++ .+++|+.||.|+.+|+.+++....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcceee
Confidence 3677999999 57778888899999999998876555554 8899999999987 899999999999999987755433
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD 247 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (434)
- .|..+|.||.+.+....+++|+.|++|++||.+....+..+. ....|.++....+
T Consensus 91 g-----------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~ 146 (323)
T KOG1036|consen 91 G-----------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGN 146 (323)
T ss_pred c-----------------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCC
Confidence 3 599999999999999999999999999999998755555554 3448889888643
Q ss_pred CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226 248 GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQG 327 (434)
Q Consensus 248 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 327 (434)
.|+.|+.|..+.+||++......+ ..-...+-.++++++-|++.-+++++-||.|.+=.++...........++.
T Consensus 147 -~LvVg~~~r~v~iyDLRn~~~~~q----~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkC 221 (323)
T KOG1036|consen 147 -RLVVGTSDRKVLIYDLRNLDEPFQ----RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC 221 (323)
T ss_pred -EEEEeecCceEEEEEcccccchhh----hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEe
Confidence 888999999999999993332221 111223457899999999888999999999988766554222222223333
Q ss_pred cc---------cceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226 328 HT---------HAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI 396 (434)
Q Consensus 328 ~~---------~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 396 (434)
|. .+|.+++|++. .|+||+.||.|.+||+.+. +.+..+..-...|.+++|+.+ |..|
T Consensus 222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs~d---------G~~L 289 (323)
T KOG1036|consen 222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFSMD---------GSLL 289 (323)
T ss_pred eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEeccC---------CCeE
Confidence 43 37788999865 7999999999999999987 556666666778999999999 8999
Q ss_pred EEeec
Q 046226 397 CTGSL 401 (434)
Q Consensus 397 ~s~~~ 401 (434)
|.++.
T Consensus 290 Aia~s 294 (323)
T KOG1036|consen 290 AIASS 294 (323)
T ss_pred EEEec
Confidence 99873
No 94
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-28 Score=215.97 Aligned_cols=314 Identities=19% Similarity=0.222 Sum_probs=234.6
Q ss_pred CCCccccee--eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEE
Q 046226 75 SPETSSSYR--CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYA 147 (434)
Q Consensus 75 ~~~~~~~~~--~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~ 147 (434)
++.+++.|- |--.+.+|++.|.||+. .|.+|++|+.||+|+||.+.++.++.++.. .+.|.||+|+|. .+++
T Consensus 381 sp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 381 SPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred ChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEE
Confidence 344444443 33447899999999999 899999999999999999999999998874 457999999996 4555
Q ss_pred EEcCCeEEEeecCCCCCceee----EeeeccCCCC---ceeE--------EEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226 148 AYGDGKIRVWRSTWDNGVKHV----KLATIPKTGG---AVRN--------LIVGKDKMMKHMGPITSIAINVSDDTLYSA 212 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~~~----~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 212 (434)
++....+.|-+..-+..+... .+...+.... .+.. +..+......|...|..|.|+..|.||++.
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 555555777765544322111 0011100000 0000 000111234699999999999999999987
Q ss_pred ecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226 213 SLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT 288 (434)
Q Consensus 213 ~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 288 (434)
..+ ..|.|+++...+....|....+.|.++.|+|.. +|+.++. ..|++||+. ....+..+......|..
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~------kqelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS------KQELVKKLLTGSKWISS 612 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh------HHHHHHHHhcCCeeeee
Confidence 654 479999998877777777778899999999998 6666654 579999987 22333344445567999
Q ss_pred EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEe------ccCCC
Q 046226 289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWA------REQDG 360 (434)
Q Consensus 289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd------~~~~~ 360 (434)
++++|.|..|+.|+.|+.+..||+...... .+.+..|...+..++++++ +|++|+.||++.||. +....
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskP---yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp 689 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKP---YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP 689 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcch---hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence 999999999999999999999999654433 3467789999999999987 799999999999984 33333
Q ss_pred ceeeEEEeeccccc----eeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 361 RHTMLAVLVGHRGP----IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 361 ~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
...++..+.+|... |..+.|+|. ...|+++|.||+|++|
T Consensus 690 liVPlK~L~gH~~~~~~gVLd~~wHP~---------qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 LIVPLKRLRGHEKTNDLGVLDTIWHPR---------QPWLFSAGADGTIRLF 732 (733)
T ss_pred ceEeeeeccCceeecccceEeecccCC---------CceEEecCCCceEEee
Confidence 45678889999776 888899998 8899999999999998
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.7e-29 Score=193.85 Aligned_cols=251 Identities=18% Similarity=0.221 Sum_probs=200.2
Q ss_pred cCCCccEEEE--EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--
Q 046226 129 KAKTSMVVAM--EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-- 204 (434)
Q Consensus 129 ~~~~~~v~~l--~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 204 (434)
..|...|.++ .|...+|++|+.|++|+|+.++.+.....+. ++.+|.++|..++|..
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~-------------------~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA-------------------ELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeee-------------------EecCCCCCeeEEeecccc
Confidence 3566666654 4556799999999999999988665422221 2348999999999975
Q ss_pred CCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226 205 SDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTL 279 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 279 (434)
-|.+|++++.||.|.||.-+.++ ....+..|...|++++|.|.+ .|++++.||.|.|.+.+.. .........
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---g~w~t~ki~ 145 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---GGWTTSKIV 145 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---CCccchhhh
Confidence 69999999999999999988774 345566799999999999877 8999999999999998732 233344455
Q ss_pred cccccCeEEEEEecC---C-----------CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-----
Q 046226 280 TAKYSPVKTLTLTLD---D-----------GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN----- 340 (434)
Q Consensus 280 ~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 340 (434)
..|.-.|++++|.|. | +.|++|+.|..|+||+.... .......+.+|...|..++|.+.
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCc
Confidence 678889999999985 4 56999999999999998754 45555678999999999998643
Q ss_pred -EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 341 -YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 341 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
+|++++.||++.||..+.....-....+......+..+.|++. |++|+.++.|+.|.+|.-+-
T Consensus 224 s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s---------Gn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 224 STIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS---------GNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred eeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc---------ccEEEEecCCcEEEEEEeCC
Confidence 8999999999999988744222233344456788999999999 99999999999999998653
No 96
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-28 Score=220.58 Aligned_cols=299 Identities=14% Similarity=0.178 Sum_probs=223.0
Q ss_pred EEEEE--cCCEEEEEeCCCeEEEecCCCceeEe---eccCCCccEEEEEEeC-------------CEEEEEEcCCeEEEe
Q 046226 96 LCIAV--GNGFIYTGSDSNVIRIWKQPEFTECG---RLKAKTSMVVAMEVSH-------------DRVYAAYGDGKIRVW 157 (434)
Q Consensus 96 ~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~l~~~~-------------~~l~~~s~dg~i~vw 157 (434)
.++.| ..+.|.+...|..++|||+.+-..+. .+--|...|+++.--| .-+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 34556 46788888999999999998754433 3445888888887654 158999999999999
Q ss_pred ecCCCCCceeeEeeec-------c---CCCCce-----eEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226 158 RSTWDNGVKHVKLATI-------P---KTGGAV-----RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR 222 (434)
Q Consensus 158 d~~~~~~~~~~~~~~~-------~---~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 222 (434)
|+.....-..+....+ + .....+ ..+........+....+.+++.+|++++|++|..-|+|+|||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 9986322222111100 0 000000 001111112234556799999999999999999999999999
Q ss_pred cCCCeeEEEcccCccCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEEEEeccc----------------
Q 046226 223 IRDSKCIETIQAHSEPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK---------------- 282 (434)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------------- 282 (434)
+...+....+..|...|.|+.++... +|++++.|..|++||+.. ...+..++.+|
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeEEEEeecCCce
Confidence 99988888899999999999998543 899999999999999751 11111111111
Q ss_pred ---------------------------------ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc
Q 046226 283 ---------------------------------YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT 329 (434)
Q Consensus 283 ---------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 329 (434)
...++.+++.|..+++++++.|.+|+|||+...+....+. .-.+|.
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK-gs~~~e 641 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK-GSRDHE 641 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec-ccccCC
Confidence 2246677788888899999999999999998766554443 334566
Q ss_pred cceEEEE--eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 330 HAVMCLA--SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 330 ~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
+....+. ++|.|+++.+.|.++.++|..++ +++....||...|+.+.|.+| .+.|++.+.||.|.|
T Consensus 642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nD---------CkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLND---------CKHLISVSGDGCIFV 709 (1080)
T ss_pred CceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeeccc---------chhheeecCCceEEE
Confidence 6665554 55789999999999999999998 899999999999999999999 999999999999999
Q ss_pred EecCC
Q 046226 408 WRVTR 412 (434)
Q Consensus 408 w~~~~ 412 (434)
|.+..
T Consensus 710 W~lp~ 714 (1080)
T KOG1408|consen 710 WKLPL 714 (1080)
T ss_pred EECch
Confidence 99975
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.2e-28 Score=196.41 Aligned_cols=266 Identities=18% Similarity=0.193 Sum_probs=207.3
Q ss_pred ccccEEEEEE---cCCEEEEEeCCCeEEEecCCC-ceeE-eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCC
Q 046226 91 KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPE-FTEC-GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDN 163 (434)
Q Consensus 91 h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~ 163 (434)
.++.|.+|+| ...+++.|+.||+||+|+++. +..+ .....|.++|.+++|+.+ .+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 5778999999 567888999999999999977 3333 345679999999999987 89999999999999999885
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC--EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD--TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 241 (434)
....- .|.++|.++.|-+... .|++|+.|.+|+.||.+...++.++. -.+.+++
T Consensus 106 ~~~v~-----------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa 161 (347)
T KOG0647|consen 106 VSQVA-----------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA 161 (347)
T ss_pred eeeee-----------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence 44333 4999999999988765 89999999999999999988888887 4456777
Q ss_pred EEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226 242 LVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY 321 (434)
Q Consensus 242 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 321 (434)
+..-.. +++.+..+..|.+|+++.... .. ........-.+++++..++....+.|+-+|.+.|..+........
T Consensus 162 ~Dv~~p-m~vVata~r~i~vynL~n~~t--e~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n- 235 (347)
T KOG0647|consen 162 ADVLYP-MAVVATAERHIAVYNLENPPT--EF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN- 235 (347)
T ss_pred hhccCc-eeEEEecCCcEEEEEcCCCcc--hh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc-
Confidence 766433 788888899999999962111 11 111112334688999999888889999999999999876533222
Q ss_pred cCcccCcc---------cceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226 322 GGALQGHT---------HAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE 390 (434)
Q Consensus 322 ~~~~~~~~---------~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 390 (434)
..++.|. ..|..++|++. .|++++.||++.+||-... ..+...+.|..+|++..|+.+
T Consensus 236 -FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~fn~~------- 304 (347)
T KOG0647|consen 236 -FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSFNRN------- 304 (347)
T ss_pred -eeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEecCC-------
Confidence 2233333 35667788754 7999999999999998876 667778889999999999988
Q ss_pred CcccEEEEe
Q 046226 391 DEYCTICTG 399 (434)
Q Consensus 391 ~~~~~l~s~ 399 (434)
|.+++-+
T Consensus 305 --G~ifaYA 311 (347)
T KOG0647|consen 305 --GSIFAYA 311 (347)
T ss_pred --CCEEEEE
Confidence 7777644
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=200.27 Aligned_cols=288 Identities=18% Similarity=0.275 Sum_probs=239.5
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCc-----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEE
Q 046226 44 PPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPET-----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRI 116 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~i 116 (434)
..++.+.+.+|...+...........+.+++.|.+ +.+.+|+.++.||.|.|+|+.| .+.+++|++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 34567889999999988776666667777777755 6778899999999999999999 7889999999999999
Q ss_pred ecC------CC----------------------------------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeE
Q 046226 117 WKQ------PE----------------------------------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKI 154 (434)
Q Consensus 117 wd~------~~----------------------------------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i 154 (434)
|.. .. ..++..+.+|.+.|.+..|-.. .++++++|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 962 10 1123456788888888888654 89999999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcc
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQ 233 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~ 233 (434)
.+||+++++.+..+. +|....+.++-+|..+++++.+.|.+.++||++.. ..+..|+
T Consensus 297 nlwDVEtge~v~~Lt----------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ 354 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT----------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ 354 (481)
T ss_pred eeeeeccCceecccc----------------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec
Confidence 999999887776663 79999999999999999999999999999999743 5678899
Q ss_pred cCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 234 AHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
+|...|+++.|.-+..+++|+.|.+|++||++ .....+.++. ...+++.++++..+..++.--.+..|++||++
T Consensus 355 GHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLr-----NMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 355 GHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLR-----NMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred ccccceeEEEEecCCceeecCCCceEEEeeec-----cccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecC
Confidence 99999999999988899999999999999998 2333333333 34688999999988899999999999999998
Q ss_pred cccccccccCcccCcccceEEEEeeCC----EEEEecCCCcEEEEeccCC
Q 046226 314 WFSAQLQYGGALQGHTHAVMCLASVAN----YVISGSADSTSRVWAREQD 359 (434)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~ 359 (434)
............++|...|.|.+|..+ -|++++.|..+.-|++...
T Consensus 429 G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 429 GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 666555555566799999999999754 5788999999999998754
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=203.14 Aligned_cols=288 Identities=19% Similarity=0.277 Sum_probs=228.5
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeE----ee-------------c-cCCCccEEEEEEeCC-
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTEC----GR-------------L-KAKTSMVVAMEVSHD- 143 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~----~~-------------~-~~~~~~v~~l~~~~~- 143 (434)
+..+..|.-+|+||++ ++.++++++.|++|.=|++.+++.. .+ - +.|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4556779999999999 8899999999999999998776533 11 1 267889999999998
Q ss_pred -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226 144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR 222 (434)
Q Consensus 144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 222 (434)
+|++|+.|..|.||+.++.+.++.+. +|.+.|.+++|-.....|++++.|+.|++|+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~----------------------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFK----------------------GHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhccc----------------------ccccceeeeeeecCccceeeeecCCceEEEe
Confidence 89999999999999999887776653 7999999999998888999999999999999
Q ss_pred cCCCeeEEEcccCccCeEEEEEcCCCeEEE-EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226 223 IRDSKCIETIQAHSEPINALVVADDGVLYS-ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG 301 (434)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 301 (434)
++....+.++.+|.+.|..|....-+.+++ |+.|+++++|++. ......+.++.+.+.|++|-.+ ..+++|
T Consensus 273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-------eesqlifrg~~~sidcv~~In~-~HfvsG 344 (479)
T KOG0299|consen 273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-------EESQLIFRGGEGSIDCVAFIND-EHFVSG 344 (479)
T ss_pred hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-------ccceeeeeCCCCCeeeEEEecc-cceeec
Confidence 999999999999999999999887775554 5599999999985 2233456677889999999854 679999
Q ss_pred cCCCeEEEEEcCcccccccccC---cc-----cCcccceEEEEee--CCEEEEecCCCcEEEEeccCCC-ceeeEEEeec
Q 046226 302 CTDGYIHYWHKGWFSAQLQYGG---AL-----QGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDG-RHTMLAVLVG 370 (434)
Q Consensus 302 ~~dg~i~i~d~~~~~~~~~~~~---~~-----~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~ 370 (434)
+.+|.|.+|++-..+....... .. ..+...|++++.. .+++++|+.+|.|++|-+..+. ...++..+.
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls- 423 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS- 423 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-
Confidence 9999999999875544332210 00 1222378888765 5699999999999999998873 345555655
Q ss_pred cccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEecCC
Q 046226 371 HRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 371 h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~~ 412 (434)
-.+.|++++|+++ |. +++..+....+--|-...
T Consensus 424 ~~GfVNsl~f~~s---------gk~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 424 LVGFVNSLAFSNS---------GKRIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred cccEEEEEEEccC---------CCEEEEecccccccceeeEee
Confidence 5788999999998 77 555556666665555443
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.7e-28 Score=204.04 Aligned_cols=262 Identities=17% Similarity=0.224 Sum_probs=214.4
Q ss_pred CccCCCCCCCcc-----cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEE
Q 046226 68 TAAAGSSSPETS-----SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV 140 (434)
Q Consensus 68 ~~~~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 140 (434)
..+.+++.|.+. ...+.+.++.||.-.|+.+.+ +...+++++.|-.|+||.............|..+|+.+..
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 456666666543 334457789999999999999 7889999999999999999888888888999999999999
Q ss_pred eCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcE
Q 046226 141 SHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTI 218 (434)
Q Consensus 141 ~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 218 (434)
+|. ++++++.||+..+.|++++..+...... ...-.+++.+|+|||..|.+|..||.|
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~--------------------~s~v~~ts~~fHpDgLifgtgt~d~~v 371 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE--------------------TSDVEYTSAAFHPDGLIFGTGTPDGVV 371 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeec--------------------cccceeEEeeEcCCceEEeccCCCceE
Confidence 985 9999999999999999888766554210 122358999999999999999999999
Q ss_pred EEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226 219 KVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL 297 (434)
Q Consensus 219 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 297 (434)
++||+..+..+..|.+|.++|..+.|+.+| +|+++.+|+.|++||+|... ...........++.++.|++.|.+
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeeccccccceeEEEcCCCCe
Confidence 999999999999999999999999999999 99999999999999999222 111111122347999999999999
Q ss_pred EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEec
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAR 356 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~ 356 (434)
|+.++.|=.|++++- ....+.....+..|.+..+++.|. ..++++++.|..++++.+
T Consensus 447 L~~~g~~l~Vy~~~k--~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKK--KTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEec--ccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999987766666653 344556666777888888888886 459999999999988854
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=3.5e-28 Score=208.98 Aligned_cols=277 Identities=16% Similarity=0.259 Sum_probs=221.5
Q ss_pred EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc---eeEeecc--CCCccEEEEEEeCC--EEEEEEcCCeEEEee
Q 046226 88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF---TECGRLK--AKTSMVVAMEVSHD--RVYAAYGDGKIRVWR 158 (434)
Q Consensus 88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~--~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd 158 (434)
.+.|..-|.++.+ ..+.++||+. |.|+|||+... ..+..+. .....|.++...|| .|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 3458888888888 6789999986 79999998642 2333332 24667889999887 899999999999999
Q ss_pred cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226 159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 238 (434)
+.........++ ....-.+.+++.+||.+..++++.||.|.|||+.....++.|++|.+.
T Consensus 494 LAapTprikael--------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 494 LAAPTPRIKAEL--------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred ccCCCcchhhhc--------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 976544322221 123346788999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 239 INALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 239 v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
+.||.++++| .|.+|+-|.+||.||++....... ......|.++.++|++.+|++|-+++.+.+.......
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~- 625 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE- 625 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccCcEEEEecCCcc-
Confidence 9999999999 999999999999999982211111 1234679999999999999999999999988764222
Q ss_pred cccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226 318 QLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT 395 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 395 (434)
+ ..+..|...|.++.|. |+++++.+.|+.+-.|...-+. .+...+ ....|.++.++.+ .++
T Consensus 626 --k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa---siFqsk-E~SsVlsCDIS~d---------dky 688 (705)
T KOG0639|consen 626 --K--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSK-ESSSVLSCDISFD---------DKY 688 (705)
T ss_pred --c--eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc---ceeecc-ccCcceeeeeccC---------ceE
Confidence 2 2455788899988874 9999999999999999998873 333332 3567999999988 899
Q ss_pred EEEeecCCeEEEEec
Q 046226 396 ICTGSLDGVLKMWRV 410 (434)
Q Consensus 396 l~s~~~Dg~v~iw~~ 410 (434)
|+||+.|....+|.+
T Consensus 689 IVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 689 IVTGSGDKKATVYEV 703 (705)
T ss_pred EEecCCCcceEEEEE
Confidence 999999999888876
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.8e-29 Score=219.62 Aligned_cols=328 Identities=18% Similarity=0.189 Sum_probs=241.6
Q ss_pred CCCCccCCCCCCCccccee-----------eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc--eeEeecc
Q 046226 65 FNPTAAAGSSSPETSSSYR-----------CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF--TECGRLK 129 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~ 129 (434)
+..+.+++++.|..++.|. ++.+++.|.+.|..++. +++.|++++.|-+|++|+.... -+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 3455788999888877665 35667889999999998 7889999999999999998776 5677889
Q ss_pred CCCccEEEEEE-eCC--EEEEEEcCCeEEEeecCCCCC--ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec
Q 046226 130 AKTSMVVAMEV-SHD--RVYAAYGDGKIRVWRSTWDNG--VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV 204 (434)
Q Consensus 130 ~~~~~v~~l~~-~~~--~l~~~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 204 (434)
.|...|.|+++ .++ .+++|+-|+.|.+||++.+.. +..+..... .. ...++...|.+++.++
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~-------~s------l~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV-------NS------LGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc-------cc------CCCCCccceeeeecCC
Confidence 99999999999 554 788889999999999987633 211111000 00 1116889999999999
Q ss_pred CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226 205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY 283 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 283 (434)
.+..|++|+..+.|++||.++++.+..+++|...|.++..++|| .+++++.||+|++||+. .+..+.++..|.
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg------qQrCl~T~~vH~ 255 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG------QQRCLATYIVHK 255 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc------ccceeeeEEecc
Confidence 99999999999999999999999999999999999999999999 99999999999999998 566677788899
Q ss_pred cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCc
Q 046226 284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGR 361 (434)
Q Consensus 284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 361 (434)
..|.++..+|+-.++++|+.||.|..-|++..... .... ....+|..+..+ .+-+.+++.|+.|+-|..+....
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~ 331 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA 331 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEee---cCCCchhhhhhccccCCceeeeccccceecCCccccc
Confidence 99999999999999999999999999999865222 1111 122344444443 44457778888899887653210
Q ss_pred eeeEEEeecc----ccceeEEEEeecc-----cCC---CCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 362 HTMLAVLVGH----RGPIRCAIAFLGR-----FGE---ETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 362 ~~~~~~~~~h----~~~v~~~~~~~~~-----~~~---~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
......+..| ...+.+....|+. .+. ..-.+.++++|-..+|.+.+||+-....
T Consensus 332 l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 332 LSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVK 397 (735)
T ss_pred cccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeee
Confidence 0000000000 0011111111110 000 0011267999999999999999986654
No 103
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.8e-28 Score=213.37 Aligned_cols=237 Identities=19% Similarity=0.271 Sum_probs=203.9
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
+.+.|+++.| +|++|++|..+|.|.|||..+.+.+..+.+ |...|-+++|....+.+|+.|+.|..+|++..+....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence 4789999999 899999999999999999999999999998 9999999999998999999999999999986654433
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD 247 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (434)
. +.+|...|..+.|++|+.+|++|+.|+.+.|||....+++..+..|...|.+++|+|-
T Consensus 296 ~---------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 296 T---------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW 354 (484)
T ss_pred h---------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC
Confidence 1 2369999999999999999999999999999999888899999999999999999986
Q ss_pred C--eEEEEe--CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE--cCCCeEEEEEcCcccccccc
Q 046226 248 G--VLYSAS--DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG--CTDGYIHYWHKGWFSAQLQY 321 (434)
Q Consensus 248 ~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~ 321 (434)
. +||+|+ .|+.|++||.. ....+... .....|.++.|++..+-|+++ ..+..|.||+... ...
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~------~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----~~~ 423 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTN------TGARIDSV-DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----MKL 423 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcC------CCcEeccc-ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc----cce
Confidence 5 888875 69999999987 22222222 234689999999988766664 5578999999754 455
Q ss_pred cCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226 322 GGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 322 ~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 359 (434)
...+.+|...|..++++ |..+++|+.|.++++|++-..
T Consensus 424 ~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 56778999999998875 679999999999999999874
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-26 Score=187.49 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=199.3
Q ss_pred eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226 123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI 200 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 200 (434)
+..+.+..-...|.++.|+.+ .+++++.|..+++||...++.++.+. .+.-.|..+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~----------------------skkyG~~~~ 62 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN----------------------SKKYGVDLA 62 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee----------------------cccccccEE
Confidence 344455556788999999987 78888999999999999888777763 355578888
Q ss_pred EEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226 201 AINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL 277 (434)
Q Consensus 201 ~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 277 (434)
+|....+.++.++. |.+|+..++.+.+.++-|.+|...|.+|+.+|-+ .+++++.|++|++||++.. ....
T Consensus 63 ~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~--~cqg---- 136 (311)
T KOG1446|consen 63 CFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK--KCQG---- 136 (311)
T ss_pred EEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC--CCce----
Confidence 88877777776665 8899999999999999999999999999999988 9999999999999999821 1111
Q ss_pred EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc-CcccceEEEEe--eCCEEEEecCCCcEEEE
Q 046226 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ-GHTHAVMCLAS--VANYVISGSADSTSRVW 354 (434)
Q Consensus 278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~s~~~dg~i~iw 354 (434)
.+. ...-..++|+|+|-++|++.....|++||++...........+. ........+.| +|++++.++..+.+++.
T Consensus 137 ~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 137 LLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred EEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 111 12334579999999999999888999999987633222211222 34455666666 58899999999999999
Q ss_pred eccCCCceeeEEEeeccccce---eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccc
Q 046226 355 AREQDGRHTMLAVLVGHRGPI---RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH 419 (434)
Q Consensus 355 d~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~ 419 (434)
|.-.| .....+.++...- ....|.|+ ++++++|+.||+|.+|+++++++....
T Consensus 215 DAf~G---~~~~tfs~~~~~~~~~~~a~ftPd---------s~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 215 DAFDG---TVKSTFSGYPNAGNLPLSATFTPD---------SKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred EccCC---cEeeeEeeccCCCCcceeEEECCC---------CcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 99988 5666666654432 56788898 999999999999999999998875443
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.5e-28 Score=216.02 Aligned_cols=273 Identities=21% Similarity=0.328 Sum_probs=223.2
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEE-EEE---cCCEEEEEeCCCeE
Q 046226 46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILC-IAV---GNGFIYTGSDSNVI 114 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~-~~~---~~~~l~tg~~dg~i 114 (434)
++...+.+|+..+...... ++..+.+++.+++++.|.. ...+.+|.+-|.+ +++ ++..|++|+.|++|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3456677888777554332 3445667777888777766 4567788888888 888 56779999999999
Q ss_pred EEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226 115 RIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH 193 (434)
Q Consensus 115 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
.+|...+..+...+++|...|.+++...+ .+++||+|.++++|....-.. . +.+|
T Consensus 84 ~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~--~----------------------l~gH 139 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY--S----------------------LQGH 139 (745)
T ss_pred EEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc--c----------------------cCCc
Confidence 99999999999999999999999997766 789999999999997642211 1 2479
Q ss_pred CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCccee
Q 046226 194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLH 273 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 273 (434)
...|++++.-|++ .+++|+.|.+|++|.- ++.+++|.+|.+.|+.+++-+++.+++++.||.|++|++. .
T Consensus 140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-------g 209 (745)
T KOG0301|consen 140 TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-------G 209 (745)
T ss_pred chheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-------C
Confidence 9999999999988 8999999999999975 7889999999999999999999999999999999999975 4
Q ss_pred EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCCcEE
Q 046226 274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADSTSR 352 (434)
Q Consensus 274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~ 352 (434)
..+..+.+|..-+.++....++..++++++|++++||+.. +..+.+......|++..+- ..-+++|+.||.||
T Consensus 210 e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~Vr 283 (745)
T KOG0301|consen 210 EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVR 283 (745)
T ss_pred ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC------ceEEEEecCccceEEEEEeeCCCEEEeccCceEE
Confidence 5677888999999999988899999999999999999864 2223333344467777653 55678889999999
Q ss_pred EEeccCC
Q 046226 353 VWAREQD 359 (434)
Q Consensus 353 iwd~~~~ 359 (434)
||.....
T Consensus 284 VfT~~k~ 290 (745)
T KOG0301|consen 284 VFTVDKD 290 (745)
T ss_pred EEEeccc
Confidence 9987643
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=203.16 Aligned_cols=278 Identities=17% Similarity=0.239 Sum_probs=217.4
Q ss_pred EEEeCCC-eEEEecCCCceeEeeccCC-CccEEEE-EEeCCEEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226 106 YTGSDSN-VIRIWKQPEFTECGRLKAK-TSMVVAM-EVSHDRVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVR 181 (434)
Q Consensus 106 ~tg~~dg-~i~iwd~~~~~~~~~~~~~-~~~v~~l-~~~~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
.+++.|. .+.+||+.+|....++++. ...-.++ ...+.+++++.. -..|.+|.+..........
T Consensus 11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------------ 78 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------------ 78 (476)
T ss_pred eccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhc------------
Confidence 3344454 5999999999999988875 2222222 334456666654 5688999886554433111
Q ss_pred EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEE
Q 046226 182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVR 260 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~ 260 (434)
--.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.|+ +|++|+.||.|.
T Consensus 79 ----------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 79 ----------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred ----------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEE
Confidence 256789999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEecccc---cCcceeEEEEEecccccCeEEEEEecC--CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226 261 VWRRYFY---SENQLHTLILTLTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL 335 (434)
Q Consensus 261 iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 335 (434)
+|++... .......+...+..|.-+|+.+...+. ..+|++++.|.++++||+......... .....+.++
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-----~fp~si~av 223 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-----TFPSSIKAV 223 (476)
T ss_pred EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-----ecCCcceeE
Confidence 9987522 122245667788899999999998775 468999999999999999866444433 223456666
Q ss_pred Eee--CCEEEEecCCCcEEEEeccCCC-------------ceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEE
Q 046226 336 ASV--ANYVISGSADSTSRVWAREQDG-------------RHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICT 398 (434)
Q Consensus 336 ~~~--~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s 398 (434)
+.+ +..+++|+.+|.|.+.++.... ....+..+.||.+ .|+|++++-| |.+|++
T Consensus 224 ~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D---------gtlLlS 294 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD---------GTLLLS 294 (476)
T ss_pred EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC---------ccEEEe
Confidence 665 6799999999999998876532 1245667889998 9999999999 999999
Q ss_pred eecCCeEEEEecCCCCccccc
Q 046226 399 GSLDGVLKMWRVTRPKSSCGH 419 (434)
Q Consensus 399 ~~~Dg~v~iw~~~~~~~~~~~ 419 (434)
|+.||.|.|||+.+.+.+...
T Consensus 295 Gd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eCCCCCEEEEecchHHHHHHH
Confidence 999999999999987655433
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-28 Score=190.80 Aligned_cols=241 Identities=19% Similarity=0.223 Sum_probs=196.7
Q ss_pred CcccccCCCCCCCCCCCCCccCCCCCCCccccee--------eeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEe
Q 046226 50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR--------CISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIW 117 (434)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iw 117 (434)
....|...+-.....+.+.+++++++|.+++.+. .+.+|.||.++|+.++| -|++||+++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 4567888888888889999999999999988764 46789999999999999 59999999999999999
Q ss_pred cCCCce--eEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc
Q 046226 118 KQPEFT--ECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM 191 (434)
Q Consensus 118 d~~~~~--~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
.-++++ .......|...|++++|.|. .|++++.||.|.|.+.+....-...+ ...
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k-------------------i~~ 146 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK-------------------IVF 146 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh-------------------hhh
Confidence 987753 44556789999999999996 68889999999999987652221111 113
Q ss_pred CcCCCeEEEEEecC---C-----------CEEEEEecCCcEEEEEcCCC--eeEEEcccCccCeEEEEEcCCC-----eE
Q 046226 192 KHMGPITSIAINVS---D-----------DTLYSASLDKTIKVWRIRDS--KCIETIQAHSEPINALVVADDG-----VL 250 (434)
Q Consensus 192 ~~~~~v~~~~~~~~---~-----------~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-----~l 250 (434)
.|.-.|++++|.|. | +.|++|+.|+.|+||+...+ +.-.++.+|.+.|+.++|.|.- .|
T Consensus 147 aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 147 AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred ccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceee
Confidence 69999999999985 4 56999999999999999875 3445688999999999999864 79
Q ss_pred EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
++++.||++.||-.+...+....+ .+......+..+.|+..|+.|++++.|..|.+|.-
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~t---ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKT---LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEecCCCcEEEEEecCccCccccc---ccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 999999999999776222222222 23335578999999999999999999999999974
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6e-27 Score=189.12 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=184.7
Q ss_pred CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC
Q 046226 130 AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD 206 (434)
Q Consensus 130 ~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 206 (434)
..++.|.+|+|+|. .+++++.||+||+|++......... ....|.++|.+++|+.||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--------------------a~~~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--------------------AQQSHDGPVLDVCWSDDG 84 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccch--------------------hhhccCCCeEEEEEccCC
Confidence 45678999999994 6668899999999999764221111 112599999999999999
Q ss_pred CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226 207 DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY 283 (434)
Q Consensus 207 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 283 (434)
..+++|+.|+.+++||+.+++ +..+..|.++|..+.|-+.. .|++|+.|.+|+.||.+ ....+..+.. .
T Consensus 85 skVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R------~~~pv~t~~L-P 156 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR------SSNPVATLQL-P 156 (347)
T ss_pred ceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccC------CCCeeeeeec-c
Confidence 999999999999999999995 56777899999999998765 79999999999999998 2222222221 2
Q ss_pred cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCc
Q 046226 284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGR 361 (434)
Q Consensus 284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~ 361 (434)
..+.++.. -..+++++..+..|.+|+++......+..... -.-.+.|++. +.+..+.|+-+|.+.|..+..+..
T Consensus 157 eRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 157 ERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred ceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 34444443 34688899999999999997554443332221 2234455554 455669999999999999987633
Q ss_pred eeeEEEeecccc---------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcccc
Q 046226 362 HTMLAVLVGHRG---------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCG 418 (434)
Q Consensus 362 ~~~~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~ 418 (434)
..-..++.|+. .|.+++|+|. -..|+|+|.||++.+||-+...++..
T Consensus 233 -~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~---------hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 233 -KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV---------HGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred -cCceeEEEeccCCCCCCceEEecceEeecc---------cceEEEecCCceEEEecchhhhhhhc
Confidence 44455666652 5778999997 78899999999999999876655543
No 109
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.4e-27 Score=203.13 Aligned_cols=256 Identities=18% Similarity=0.227 Sum_probs=205.4
Q ss_pred CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-
Q 046226 130 AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS- 205 (434)
Q Consensus 130 ~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 205 (434)
.|.+.|+.+.+.|. .+++.+..+.|.|||........... +.. .+.-.+.+|.+.-..++|++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-------~~~-----~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-------GEC-----RPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-------ccC-----CCceEEEeeccccccccccccc
Confidence 48888999998874 67777889999999986543322110 000 111123478888888999975
Q ss_pred CCEEEEEecCCcEEEEEcCCCe-------eEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226 206 DDTLYSASLDKTIKVWRIRDSK-------CIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI 276 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 276 (434)
...|++++.|+.|++||+.... ....+.+|...|..++|++-. ++++++.|+.+.|||+|. . ..+..
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---~-~~~~~ 265 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---N-TSKPS 265 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---C-CCCCc
Confidence 4678999999999999996432 355678899999999999876 899999999999999993 1 44455
Q ss_pred EEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC---EEEEecCCCcEE
Q 046226 277 LTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN---YVISGSADSTSR 352 (434)
Q Consensus 277 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~ 352 (434)
....+|.+.+.+++|+| ++..||+|+.|++|.+||+|.... ....+.+|...|.++.|++. .|++++.|+.+.
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 56778999999999999 567889999999999999986554 44578899999999999854 899999999999
Q ss_pred EEeccCCC-----------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 353 VWAREQDG-----------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 353 iwd~~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
|||+..-+ ..+++..-.||...|..+.|+|.. ...|+|.++|+.+.||++..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e--------PW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE--------PWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC--------CeEEEEecCCceEEEeeccc
Confidence 99987532 335677888999999999999996 77899999999999999873
No 110
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=211.44 Aligned_cols=282 Identities=18% Similarity=0.254 Sum_probs=207.4
Q ss_pred cCCEEEEEeCCCeEEEecCCCcee------EeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeee
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTE------CGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLAT 172 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~ 172 (434)
...+||.+.+||.|.++|...... +.....|...|.++.|.|. .|+++++|.++++||+.....+..-
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~---- 138 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR---- 138 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce----
Confidence 355789999999999999865332 3456689999999999997 8999999999999999876554432
Q ss_pred ccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCe------------------------
Q 046226 173 IPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSK------------------------ 227 (434)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~------------------------ 227 (434)
.+.+|...|.+++|.+.+ ..|++|+.||.|.|||++-..
T Consensus 139 ----------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 139 ----------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred ----------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 123899999999999965 567899999999999986322
Q ss_pred ---eEEEcccCccC----eEEEEEcCCCeEEEEeC-CCeEEEEecccccCcceeEEEE--Eeccc---ccCeEEEEEecC
Q 046226 228 ---CIETIQAHSEP----INALVVADDGVLYSASD-DATVRVWRRYFYSENQLHTLIL--TLTAK---YSPVKTLTLTLD 294 (434)
Q Consensus 228 ---~~~~~~~~~~~----v~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~~~---~~~v~~~~~~~~ 294 (434)
.+...+.+... |+.+.|-.+..|++++. |+.|+|||++............ .+..+ ...+.++..+..
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 01111223333 44455554558888887 9999999998433222222111 12222 346778888888
Q ss_pred CCEEEEEcCCCeEEEEEcCcccccccccCcccCccc----ceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeec
Q 046226 295 DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH----AVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVG 370 (434)
Q Consensus 295 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 370 (434)
|.+|++.|.|+.|++|++........ ..+.++.. .-.++.+++.++++|+.|...++|.+.+.. .....+.+
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~--~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~G 358 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPV--AEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLG 358 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCch--hhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhC
Confidence 99999999999999999975443222 22333321 224566789999999999999999998763 56667889
Q ss_pred cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 371 HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 371 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
|.-.|++++|.|.. -.-++++++|-.++||++.++-
T Consensus 359 ht~eVt~V~w~pS~--------~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 359 HTREVTTVRWLPSA--------TTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred cceEEEEEeecccc--------CCCceeeccCcceEEEeccCch
Confidence 99999999999875 3347778999999999997653
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-26 Score=187.62 Aligned_cols=255 Identities=15% Similarity=0.217 Sum_probs=200.0
Q ss_pred cCCCccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--
Q 046226 129 KAKTSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-- 204 (434)
Q Consensus 129 ~~~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 204 (434)
.+|..-|.++.|.. .++++|+.|++|+|||.+......... .....|.+.|..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T------------------s~Wrah~~Si~rV~WAhPE 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT------------------SSWRAHDGSIWRVVWAHPE 71 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe------------------eeEEecCCcEEEEEecCcc
Confidence 46888899999876 499999999999999975543332221 12236999999999965
Q ss_pred CCCEEEEEecCCcEEEEEcCC---------CeeEEEcccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcce
Q 046226 205 SDDTLYSASLDKTIKVWRIRD---------SKCIETIQAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
-|+.+++++.|+++.||.-.. .....++......|+++.|.|.. +|++++.||.+|||+....-+...
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 389999999999999998621 22445666778899999999875 899999999999998763333333
Q ss_pred eEEEEEec-------ccccCeEEEEEecC---CCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226 273 HTLILTLT-------AKYSPVKTLTLTLD---DGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337 (434)
Q Consensus 273 ~~~~~~~~-------~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 337 (434)
..+...+. .+..+..|+.|+|. ..+|++|+.+ +.++||.......+......+.+|..+|.+++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 33333333 45567889999984 4678888776 589999887766677777888899999999999
Q ss_pred eCC------EEEEecCCCcEEEEeccCC-----------------CceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 338 VAN------YVISGSADSTSRVWAREQD-----------------GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 338 ~~~------~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
.++ .||+++.|| |+||.+... -..+.+..+..|.+.|+.+.|.-. |.
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt---------Gt 301 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT---------GT 301 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee---------ee
Confidence 754 799999999 999998731 123566778899999999999998 99
Q ss_pred EEEEeecCCeEEEEecC
Q 046226 395 TICTGSLDGVLKMWRVT 411 (434)
Q Consensus 395 ~l~s~~~Dg~v~iw~~~ 411 (434)
+|++.|.||.||+|...
T Consensus 302 iLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeecCCCceeeehhhh
Confidence 99999999999999865
No 112
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4e-26 Score=207.64 Aligned_cols=311 Identities=15% Similarity=0.214 Sum_probs=248.1
Q ss_pred CCcccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEc
Q 046226 76 PETSSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYG 150 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~ 150 (434)
.+++++.+.++++.++...|+++.- -=+.+|.|..+|+|.|+|++..+.+.+++...+.|+.++|..| .+++|+.
T Consensus 186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~ 265 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS 265 (910)
T ss_pred EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence 3567788889999999999999998 5689999999999999999999999999876799999999966 7888888
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC----
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---- 226 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---- 226 (434)
.|.+.+||++..+.+.... ..|.+.|....|.+....+++++.|+.+++|=.+++
T Consensus 266 ~G~m~~wDLe~kkl~~v~~---------------------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 266 NGDMAFWDLEKKKLINVTR---------------------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred CceEEEEEcCCCeeeeeee---------------------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcc
Confidence 8999999998776655443 158899999999999999999999999998866543
Q ss_pred eeEEEcccCccCeEEEEEc-CCC-eEEEEeCCCeEEEEecccccCcc---------------------------------
Q 046226 227 KCIETIQAHSEPINALVVA-DDG-VLYSASDDATVRVWRRYFYSENQ--------------------------------- 271 (434)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~--------------------------------- 271 (434)
+.++.-.+|..+..|+.|. .++ .+.+++.|++++.+++......+
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 4556667899999999998 445 88899999988888753100000
Q ss_pred -----------------------------eeEEEE---EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 272 -----------------------------LHTLIL---TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 272 -----------------------------~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
...... .+......+++++.++.|++.+.|...|.|-+|++..+-...
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~ 484 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK 484 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec
Confidence 000000 011122468899999999999999999999999997654444
Q ss_pred cccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCc------------------------------------
Q 046226 320 QYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGR------------------------------------ 361 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~------------------------------------ 361 (434)
.+. .-..|..+|++++.++ +.+++++.+|.+.+||......
T Consensus 485 sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 485 SFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV 563 (910)
T ss_pred ccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence 332 3358999999999985 5799999999999999875420
Q ss_pred --eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 362 --HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 362 --~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
.+.++.+.+|.+.|++++|||+ |+.|++++.|++|++||+.++..+.
T Consensus 564 ~t~kvvR~f~gh~nritd~~FS~D---------grWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 564 VTRKVVREFWGHGNRITDMTFSPD---------GRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhhhHHhhccccceeeeEeCCC---------CcEEEEeecCCcEEEEeccCcceee
Confidence 0223456689999999999999 9999999999999999999988664
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=9.2e-26 Score=194.29 Aligned_cols=300 Identities=18% Similarity=0.263 Sum_probs=221.9
Q ss_pred EEEeec-cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCC
Q 046226 86 SSVLKK-DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWD 162 (434)
Q Consensus 86 ~~~~~h-~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~ 162 (434)
..+.++ ..-|.|++| .+.-++||..+|.|.||+..+.+..+....|.+.|.++..-.+ .|++|+.|..|..|| ..-
T Consensus 239 ~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y 317 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNY 317 (626)
T ss_pred eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccc
Confidence 334443 357999999 7778999999999999999888877777799999999999887 888899999999999 222
Q ss_pred CCceeeEeeeccCCCCceeEEEecc----------------------ccccCcCCCeEEEEEecCCCEEEEEecCCcEEE
Q 046226 163 NGVKHVKLATIPKTGGAVRNLIVGK----------------------DKMMKHMGPITSIAINVSDDTLYSASLDKTIKV 220 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 220 (434)
+..+. .++|+..+.++.+..+. ...++|......++.+|+.+++++++.|+.+++
T Consensus 318 ~k~r~---~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 318 RKLRE---TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred ccccc---ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence 22222 22333333332222111 134579999999999999999999999999999
Q ss_pred EEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE
Q 046226 221 WRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG 300 (434)
Q Consensus 221 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 300 (434)
|+ ..+.+.+.. -..++.|+.|+|.|.++.|...|...+.|.. ....+..... ..+++.++|+|+|.+|+.
T Consensus 395 W~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e------~~~lv~~~~d-~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 395 WN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVLDTE------TQDLVTIHTD-NEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEEecc------cceeEEEEec-CCceEEEEEcCCCCEEEE
Confidence 99 445554443 4568899999999999999999999999976 2333333333 789999999999999999
Q ss_pred EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE------------------------
Q 046226 301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW------------------------ 354 (434)
Q Consensus 301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw------------------------ 354 (434)
|+.|+.|+||.+..............+ .+|+.+.|+ +++|.+-+.|-.|..|
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lG 542 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLG 542 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEE
Confidence 999999999998765554444333333 566666654 4466555555555555
Q ss_pred ------------------------------------eccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226 355 ------------------------------------AREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT 398 (434)
Q Consensus 355 ------------------------------------d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 398 (434)
...-........++.+|...|++++|..+ ...+++
T Consensus 543 F~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~---------d~~li~ 613 (626)
T KOG2106|consen 543 FEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCK---------DSHLIS 613 (626)
T ss_pred EEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeC---------CceEEe
Confidence 32222112344566789999999999988 677777
Q ss_pred eecCCeEEEEec
Q 046226 399 GSLDGVLKMWRV 410 (434)
Q Consensus 399 ~~~Dg~v~iw~~ 410 (434)
.+.|..|..|++
T Consensus 614 tg~D~Si~qW~l 625 (626)
T KOG2106|consen 614 TGKDTSIMQWRL 625 (626)
T ss_pred cCCCceEEEEEe
Confidence 779999999986
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.8e-27 Score=199.42 Aligned_cols=251 Identities=22% Similarity=0.334 Sum_probs=202.4
Q ss_pred cCCEEEEEeC-CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 101 GNGFIYTGSD-SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 101 ~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
.+.+++++.. ...|.+|.+...........-.++|.+++-+|+ +|+.|+..|.|++|.+.++..+..+.
T Consensus 49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------- 120 (476)
T KOG0646|consen 49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------- 120 (476)
T ss_pred chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH--------
Confidence 5567777655 348899998765555544445778999999987 55555589999999999988776663
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC---------CCeeEEEcccCccCeEEEEEcCCC
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR---------DSKCIETIQAHSEPINALVVADDG 248 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~ 248 (434)
+|...|+|+.|+-|+.+|++|+.||.|.+|++. +-+++..|..|.-+|+++.+.+.+
T Consensus 121 --------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg 186 (476)
T KOG0646|consen 121 --------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG 186 (476)
T ss_pred --------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence 699999999999999999999999999999873 246788899999999999998775
Q ss_pred ---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc--------
Q 046226 249 ---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA-------- 317 (434)
Q Consensus 249 ---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------- 317 (434)
++++++.|.++++||+. ....+.+.. ....+.+++++|.++.+++|+.+|.|.+.++.....
T Consensus 187 ~~~rl~TaS~D~t~k~wdlS------~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 187 TNARLYTASEDRTIKLWDLS------LGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred ccceEEEecCCceEEEEEec------cceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence 99999999999999997 333333332 346899999999999999999999999998764431
Q ss_pred ----cccccCcccCccc--ceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 318 ----QLQYGGALQGHTH--AVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 318 ----~~~~~~~~~~~~~--~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
.......+.+|.+ .|+|++. +|..|++|+.||.|+|||+.+. ++++++..-.++|+.+.+.|-
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHhhhccccceeEeecc
Confidence 1222345668888 8999886 5899999999999999999987 788877767889999988543
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.4e-27 Score=202.32 Aligned_cols=261 Identities=21% Similarity=0.251 Sum_probs=195.1
Q ss_pred eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226 123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS 199 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (434)
.....+++|+..|.++++.|. ++++|+.|..|++||+...... ..++... ......|++
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~------------------P~E~h~i~s 219 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ------------------PCETHQINS 219 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC------------------cccccccce
Confidence 344567889999999999987 9999999999999998754321 1221110 135568999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCeeEE------------EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226 200 IAINVSDDTLYSASLDKTIKVWRIRDSKCIE------------TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRY 265 (434)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~ 265 (434)
++|++.+..|++.+.....+|+|-...+.+. ..++|...++|.+|+|.. .+++++.||++|+||+.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 9999999999999989999999975444332 235789999999999988 89999999999999987
Q ss_pred cccCcceeEEEEE--ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc--ceEEEEee--C
Q 046226 266 FYSENQLHTLILT--LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH--AVMCLASV--A 339 (434)
Q Consensus 266 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~ 339 (434)
... ...+.+.. ..+..-+++.++|++++++|++|+.||.|.+|+.+.......+ ..-..|.. .|+|+.|+ |
T Consensus 300 ~~k--~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~-~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 300 NTK--SQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM-KVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred Cch--hheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccce-EeeeccCCCCceeEEEecccc
Confidence 222 22222222 2233457899999999999999999999999997543322221 23346666 88999885 8
Q ss_pred CEEEEecCCCcEEEEeccCCCceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEee------cCCeEEEEecC
Q 046226 340 NYVISGSADSTSRVWAREQDGRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGS------LDGVLKMWRVT 411 (434)
Q Consensus 340 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~------~Dg~v~iw~~~ 411 (434)
++|++-+.|+++++||++..+ +++....+ ...+-+.++|+|+ .++|++|. .-|.+.+||-.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd---------~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPD---------DKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred chhhhccCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCC---------ceEEEecccccCCCCCceEEEEecc
Confidence 899999999999999999865 34433333 3345678999999 88999885 45789999876
Q ss_pred CCCc
Q 046226 412 RPKS 415 (434)
Q Consensus 412 ~~~~ 415 (434)
+-..
T Consensus 446 t~d~ 449 (641)
T KOG0772|consen 446 TLDT 449 (641)
T ss_pred ceee
Confidence 5543
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=7.7e-26 Score=183.39 Aligned_cols=247 Identities=16% Similarity=0.205 Sum_probs=189.0
Q ss_pred CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226 131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT 208 (434)
Q Consensus 131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 208 (434)
....|.+|.|+|. .|+++++||++++||+........+ .|..++.+++|.+ ...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-----------------------~~~~plL~c~F~d-~~~ 67 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-----------------------KHGAPLLDCAFAD-EST 67 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-----------------------ecCCceeeeeccC-Cce
Confidence 4678999999974 8888899999999999876444444 4999999999975 668
Q ss_pred EEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226 209 LYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVK 287 (434)
Q Consensus 209 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 287 (434)
+++|+.||.|+.+|+.+++. ..+..|..+|.||..++.. .+++|+.|++|++||.+. ......+. ....|.
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------~~~~~~~d-~~kkVy 139 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------KVVVGTFD-QGKKVY 139 (323)
T ss_pred EEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------cccccccc-cCceEE
Confidence 99999999999999998775 4456699999999999765 999999999999999882 22222222 223666
Q ss_pred EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCC-Cceee
Q 046226 288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQD-GRHTM 364 (434)
Q Consensus 288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~-~~~~~ 364 (434)
++.. .++.|++|+.|..|.+||++......+. .-..-.-.+.|++. ++.-++.++-||.|.+=.++.. .....
T Consensus 140 ~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~--reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 140 CMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQR--RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred EEec--cCCEEEEeecCceEEEEEcccccchhhh--ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 6655 5789999999999999999876555432 12233345566655 4567888999999988666554 11133
Q ss_pred EEEeecccc---------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcccccccc
Q 046226 365 LAVLVGHRG---------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNK 422 (434)
Q Consensus 365 ~~~~~~h~~---------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~ 422 (434)
...|+.|.. +|++++|+|- ...|+|||.||.|.+||+.+.|++++....
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~---------~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPI---------HGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccc---------cceEEecCCCceEEEccCcchhhhhhccCC
Confidence 456666643 7999999998 789999999999999999999987765443
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=6.5e-27 Score=189.61 Aligned_cols=291 Identities=16% Similarity=0.258 Sum_probs=224.3
Q ss_pred CCCCCCCCC-CCCcccccCCCCCCCCCCCCCccCCCCCCCccccee-----------------------eeEEEeecccc
Q 046226 39 TFPYSPPRF-SSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR-----------------------CISSVLKKDGQ 94 (434)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~h~~~ 94 (434)
.+.+.|++. ..-+..|+.+..+..+++++..+++++.|-.++.++ .|++|..|.+.
T Consensus 95 ~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de 174 (430)
T KOG0640|consen 95 GSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE 174 (430)
T ss_pred cCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc
Confidence 333444443 346788999999999999999999999987766543 47888999999
Q ss_pred EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeecc--CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceee
Q 046226 95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLK--AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHV 168 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~ 168 (434)
|+++.| ....|++|+.|++|++||+..-...+.++ ....+|.++.|+|. +|++|....++++||+++-++....
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 999999 78999999999999999987643332222 24568999999996 8899999999999999876543332
Q ss_pred EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-Cc-cCeEEEEEcC
Q 046226 169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HS-EPINALVVAD 246 (434)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~-~~v~~~~~~~ 246 (434)
. |. .+|.+.|+++.+++.+++.++|+.||.|++||--+++|+.++.. |. ..|.+..|..
T Consensus 255 n----Pd---------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk 315 (430)
T KOG0640|consen 255 N----PD---------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK 315 (430)
T ss_pred C----cc---------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence 1 11 26999999999999999999999999999999999999998864 54 4788899999
Q ss_pred CC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-----ccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccc
Q 046226 247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK-----YSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQL 319 (434)
Q Consensus 247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~ 319 (434)
++ ++++.+.|..+++|.+. ....+..+.+. ..--+...|+....+++.-.+ .+.+.-||.++.....
T Consensus 316 n~kyiLsSG~DS~vkLWEi~------t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 316 NGKYILSSGKDSTVKLWEIS------TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred CCeEEeecCCcceeeeeeec------CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 99 99999999999999987 23333333322 111233456666667666554 5788999987655443
Q ss_pred cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEecc
Q 046226 320 QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWARE 357 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~ 357 (434)
.. .-+|.+.+.++.-+ +..+++|+.|..+|+|--+
T Consensus 390 l~---slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 LL---SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hc---ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 32 23899999998766 4589999999999999644
No 118
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=3.3e-26 Score=181.15 Aligned_cols=265 Identities=17% Similarity=0.147 Sum_probs=224.9
Q ss_pred CCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeE-------EEeeccccEEEEEE---cCCEEEEEeCCCeEEEec
Q 046226 49 SPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCIS-------SVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWK 118 (434)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd 118 (434)
+..++|...+.+..+.-++..+++++.++++..|+.-. ...+|.+.|-.++| ..++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56778888999999999999999999999988877632 35789999999999 788999999999999999
Q ss_pred CCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226 119 QPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP 196 (434)
Q Consensus 119 ~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (434)
+..+++...+....+.+. +.|+|+ +++++..|..|.+.|.++.+..... .....
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-----------------------~~~~e 149 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-----------------------QFKFE 149 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehh-----------------------cccce
Confidence 999999998876666555 567776 8999999999999998876555444 25556
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEE
Q 046226 197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTL 275 (434)
Q Consensus 197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 275 (434)
+..++|+-++.+|+.....|+|.|......+++..++.|.....||.|+|+| ++++|+.|..+.+||+. ....
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~------ELiC 223 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVD------ELIC 223 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChh------Hhhh
Confidence 8889999888888887778999999999999999999999999999999999 99999999999999987 3445
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCC
Q 046226 276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSAD 348 (434)
Q Consensus 276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 348 (434)
...+..+.-+|+.+.|+-+|++|++|++|..|-|=++.++....+. .+.++...++|+++ +||-+++|
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI-----~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI-----PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe-----eccCCceeEEecCCCceeeEEecC
Confidence 5666778889999999999999999999999999988877766654 56678889999976 45555443
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-25 Score=182.54 Aligned_cols=265 Identities=15% Similarity=0.226 Sum_probs=199.6
Q ss_pred eeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEee
Q 046226 89 LKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWR 158 (434)
Q Consensus 89 ~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd 158 (434)
.+|.+-|.|+.| .|+.+|||+.|++|+|||..+ ..+....+.|.+.|..+.|.+. .+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 358999999999 799999999999999999643 5667778899999999999653 788999999999997
Q ss_pred cCCCCCceeeEeeeccCCC-CceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCC------eeE
Q 046226 159 STWDNGVKHVKLATIPKTG-GAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDS------KCI 229 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~------~~~ 229 (434)
-...... ..+ ..++ ...+......|+++.|.|. |-.|++++.||.++||+.-.. ...
T Consensus 90 E~~~~~~---------~~~~~Wv~-----~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 90 EQEKSEE---------AHGRRWVR-----RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred ecccccc---------cccceeEE-----EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhh
Confidence 4211100 000 1111 1122357789999999985 778999999999999987542 222
Q ss_pred EEcc-------cCccCeEEEEEcCCC----eEEEEeCC-----CeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226 230 ETIQ-------AHSEPINALVVADDG----VLYSASDD-----ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL 293 (434)
Q Consensus 230 ~~~~-------~~~~~v~~~~~~~~~----~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 293 (434)
..++ .+..+..|+.|++.. +|+.|+.+ +.+.||... ........+..+..|..+|+.++|.|
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~--e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN--ENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec--CCcceeeeehhcCCCCCcceeeeecc
Confidence 2232 356678899999765 56666655 478899765 33335556677889999999999999
Q ss_pred C----CCEEEEEcCCCeEEEEEcCccc----------------ccccccCcccCcccceEEEEee--CCEEEEecCCCcE
Q 046226 294 D----DGLLYGGCTDGYIHYWHKGWFS----------------AQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTS 351 (434)
Q Consensus 294 ~----~~~l~~~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i 351 (434)
+ -..|++++.|| |+||.+.... ...+....+.+|.+.|..+.|+ |..|++.+.||.|
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 5 35799999999 9999986311 2233445678999999999997 8899999999999
Q ss_pred EEEeccCCCceeeEEEeec
Q 046226 352 RVWAREQDGRHTMLAVLVG 370 (434)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~ 370 (434)
|+|...-...+++...+..
T Consensus 313 RLWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 313 RLWKANYNNLWKCTSVLKA 331 (361)
T ss_pred eehhhhhhhhheeeeEEec
Confidence 9998877666677766655
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.9e-25 Score=171.05 Aligned_cols=241 Identities=21% Similarity=0.248 Sum_probs=192.8
Q ss_pred EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCcee-----EeeccCCCccEEEEEEeCC------EEEEEEc-CCe
Q 046226 88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTE-----CGRLKAKTSMVVAMEVSHD------RVYAAYG-DGK 153 (434)
Q Consensus 88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~l~~~~~------~l~~~s~-dg~ 153 (434)
-+.|.+.|+|.+| .|++|+||+.|.+|++..++...+ -.++..|.+.|..++|-.+ .|++++. |..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 4679999999999 899999999999999976543222 2346779999999999654 4444443 777
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 233 (434)
|++-|-..++....+. +|.+-|.++ ++-++-++++|+.|.+|++||++-..++.++.
T Consensus 165 iy~tdc~~g~~~~a~s----------------------ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALS----------------------GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred EEEeecCCCCcceeec----------------------CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 7777776665555442 799999887 34568999999999999999999888888775
Q ss_pred c--C-----ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226 234 A--H-----SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 234 ~--~-----~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
. | ...|.++++.|.| +|++|-.|....+||++ -...+..+..|...|.++.|+|...++++++.|.
T Consensus 222 ~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir------g~r~iq~f~phsadir~vrfsp~a~yllt~syd~ 295 (350)
T KOG0641|consen 222 NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR------GGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM 295 (350)
T ss_pred CcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee------CCceeeeeCCCccceeEEEeCCCceEEEEecccc
Confidence 3 2 3578999999999 89999999999999998 4567778889999999999999999999999999
Q ss_pred eEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEecc
Q 046226 306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWARE 357 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~ 357 (434)
.|++-|+...-...........|...+..+.|.+. -+++.+.|.++.+|-+.
T Consensus 296 ~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 296 KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999986543322222344567888888888865 68889999999999764
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=5.9e-26 Score=202.54 Aligned_cols=320 Identities=20% Similarity=0.272 Sum_probs=239.1
Q ss_pred ceeeeEEEeeccccEEEEEE-----cCCEEEEEeCCCeEEEecCCCce---------------------eE---------
Q 046226 81 SYRCISSVLKKDGQILCIAV-----GNGFIYTGSDSNVIRIWKQPEFT---------------------EC--------- 125 (434)
Q Consensus 81 ~~~~~~~~~~h~~~v~~~~~-----~~~~l~tg~~dg~i~iwd~~~~~---------------------~~--------- 125 (434)
.++.+..+.||.+.|.+++| +.-+||+++.|..||||.+.-+. ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 67888999999999999999 24589999999999999753211 11
Q ss_pred -eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc--eeeEeeeccC-CC--------------------Cc
Q 046226 126 -GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV--KHVKLATIPK-TG--------------------GA 179 (434)
Q Consensus 126 -~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~--~~~~~~~~~~-~~--------------------~~ 179 (434)
..+.+|++.|+++.|+|. .|++++.|.++.+|.-.....+ ...++..... .+ +.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 123489999999999998 7999999999999987655333 2333322221 00 01
Q ss_pred eeEEE-------eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeEEEcccCccCeEEEEEcCCC
Q 046226 180 VRNLI-------VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCIETIQAHSEPINALVVADDG 248 (434)
Q Consensus 180 ~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~ 248 (434)
.+... .......+|.+.|++++|+|.|.+|++.+.|.+-+++-.-. ...+.+-+.|...++|+++-+..
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 11111 11223458999999999999999999999999999986541 12344445688899999999845
Q ss_pred -eEEEEeCCCeEEEEeccc------------------------------------c-----cCcc---------------
Q 046226 249 -VLYSASDDATVRVWRRYF------------------------------------Y-----SENQ--------------- 271 (434)
Q Consensus 249 -~l~s~~~dg~i~iwd~~~------------------------------------~-----~~~~--------------- 271 (434)
.+++|.....+|+|+... . .+..
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 999999999999997520 0 0000
Q ss_pred --------------eeEEEEEecccccCeEEEEEecCCCEEEEEcCC-----CeEEEEEcCcccccccccCcccCcccce
Q 046226 272 --------------LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-----GYIHYWHKGWFSAQLQYGGALQGHTHAV 332 (434)
Q Consensus 272 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v 332 (434)
.......+.+|...|.+++.+|+++++++++.. ..|++|+.... .....+.+|.-.|
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----~~~~~L~~HsLTV 575 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----LQVQELEGHSLTV 575 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch----hhhheecccceEE
Confidence 001112456788899999999999999999864 46899986433 3334678999999
Q ss_pred EEEEee--CCEEEEecCCCcEEEEeccCCCce-eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226 333 MCLASV--ANYVISGSADSTSRVWAREQDGRH-TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 333 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~ 409 (434)
+.+.|+ +++|++.+.|.++.+|........ ......+.|..-|++..|+|+ +.+++|+|.|.+|++|.
T Consensus 576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pd---------e~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPD---------EKYFATASRDKKVKVWE 646 (764)
T ss_pred EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcc---------cceeEEecCCceEEEEe
Confidence 999986 679999999999999998654211 224457899999999999999 88999999999999999
Q ss_pred cCCC
Q 046226 410 VTRP 413 (434)
Q Consensus 410 ~~~~ 413 (434)
....
T Consensus 647 ~~~~ 650 (764)
T KOG1063|consen 647 EPDL 650 (764)
T ss_pred ccCc
Confidence 9887
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=8.7e-27 Score=192.65 Aligned_cols=278 Identities=18% Similarity=0.293 Sum_probs=217.4
Q ss_pred CCCCcccccCCCCCC-CCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCC
Q 046226 47 FSSPISLHTSPLSSP-RHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQP 120 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~ 120 (434)
+.-.+.+|..-+++. .+|.....+++++.|+-++.|+. +.++..|.|.|..|+++.+.++++++|.+|+.|.++
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence 344678999999886 45556688999999987776655 778999999999999977999999999999999875
Q ss_pred CceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE
Q 046226 121 EFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT 198 (434)
Q Consensus 121 ~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 198 (434)
. ....++.+ ...+..+.-+.. .+++++ ..|.|||......+..+.. ....|.
T Consensus 138 ~-~p~~tilg-~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smsw----------------------G~Dti~ 191 (433)
T KOG0268|consen 138 G-PPLHTILG-KSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSW----------------------GADSIS 191 (433)
T ss_pred C-Ccceeeec-cccccccccccccccccccC--ceeeecccccCCccceeec----------------------CCCcee
Confidence 5 34555543 344566665543 445544 4599999887766666642 566799
Q ss_pred EEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226 199 SIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276 (434)
Q Consensus 199 ~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 276 (434)
++.|+|-. ..|++|..|+.|.+||++++.+++.+. -.-.-+.|+|+|.. .++++.+|..+..||++ ......
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR-----~l~~p~ 265 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMR-----NLSRPL 265 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhh-----hhcccc
Confidence 99999965 556777799999999999998877664 33455789999977 89999999999999998 566677
Q ss_pred EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEE
Q 046226 277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVW 354 (434)
Q Consensus 277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iw 354 (434)
....+|.+.|.+++|+|.|+-+++|+.|.+|+||..+.....-.+.. ..-..|.|+.|+ .+++++|++|+.|++|
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccEEEecCCCcceeee
Confidence 78889999999999999999999999999999999865443322211 122467888885 6799999999999999
Q ss_pred eccCC
Q 046226 355 AREQD 359 (434)
Q Consensus 355 d~~~~ 359 (434)
.....
T Consensus 343 ka~As 347 (433)
T KOG0268|consen 343 KAKAS 347 (433)
T ss_pred ecchh
Confidence 86543
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-25 Score=204.46 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=209.2
Q ss_pred eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc-eeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCce
Q 046226 90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF-TECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVK 166 (434)
Q Consensus 90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~ 166 (434)
.|.+.-+.++| +|++|+|++.||.|++|+...- +....+..+...|.+++...+.+++++.+++|.+|.+..++.-.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 58888999999 8999999999999999987665 55555555888999999999999999999999999987665443
Q ss_pred eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD 246 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 246 (434)
.+. ...-++++++|+.+|++++.|+.|-.|++.++.+......+++|.++|.++.++|
T Consensus 91 iL~----------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 91 ILA----------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eee----------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 332 2456799999999999999999999999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCeEEEEecccccCcceeEEEEE-eccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC
Q 046226 247 DG-VLYSASDDATVRVWRRYFYSENQLHTLILT-LTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG 323 (434)
Q Consensus 247 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 323 (434)
++ +|++.+.||.|++||+...........+.. .... ...+..++|+|++..+++.+.|+.|++|+.........+..
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~ 228 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD 228 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc
Confidence 99 999999999999999873222111111111 1111 34677899999999999999999999999877666665543
Q ss_pred cccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 324 ALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 324 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
. .+...+.+++|+ |.|||+++.||.|.|||.++-.. ......|.+++|.|+
T Consensus 229 ~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-------~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 229 K--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-------HEFKRAVCCEAWKPN 281 (933)
T ss_pred c--ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-------ccccceeEEEecCCC
Confidence 3 333336666665 78999999999999999987311 223457888999888
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.9e-24 Score=186.30 Aligned_cols=339 Identities=14% Similarity=0.226 Sum_probs=251.6
Q ss_pred CCCCcccccCCCCCCCCCCCCCccCCCCCCC--------cccce-----eeeEEEeeccccEEEEEE----cCCEEEEE-
Q 046226 47 FSSPISLHTSPLSSPRHPFNPTAAAGSSSPE--------TSSSY-----RCISSVLKKDGQILCIAV----GNGFIYTG- 108 (434)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~l~tg- 108 (434)
..+-..+|...+.+....|+...++++-... .++.| ..+..+-.-+..|+|++| .|.+|+.-
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 3456678888887776666666665433222 12223 334445456778999999 45565554
Q ss_pred -eCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226 109 -SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV 185 (434)
Q Consensus 109 -~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
+.+..+.|||.+.+......+.....|....|+|. .++.....+.+.+|+.+.+...+...+...
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek------------ 243 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK------------ 243 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc------------
Confidence 33558899999999888888888888999999995 677777789999999887766555433221
Q ss_pred ccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecc
Q 046226 186 GKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRY 265 (434)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~ 265 (434)
.....|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.|++|+.|..|..||-.
T Consensus 244 ------~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~ 316 (626)
T KOG2106|consen 244 ------REKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN 316 (626)
T ss_pred ------ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccc
Confidence 1236799999998876 778999999999999888887777799999999999999988899999999999832
Q ss_pred cccCc----------------------------------ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226 266 FYSEN----------------------------------QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311 (434)
Q Consensus 266 ~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 311 (434)
..... -.........+|......++.+|+.+.+++++.|+.+++|+
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 10000 00011123446677788899999999999999999999998
Q ss_pred cCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226 312 KGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET 389 (434)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 389 (434)
..+.+.... -..++.|+.|+ | .++.|+..|...+.|.++. ..+..-.. ..+++++.|+|+
T Consensus 397 ----~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~------ 458 (626)
T KOG2106|consen 397 ----DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPD------ 458 (626)
T ss_pred ----CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCC------
Confidence 223232222 22355666665 5 9999999999999999984 44444444 889999999999
Q ss_pred CCcccEEEEeecCCeEEEEecCCCCccccccccccC
Q 046226 390 EDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNG 425 (434)
Q Consensus 390 ~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~~g 425 (434)
|.+||.|+.|+.|+||.+...........+..|
T Consensus 459 ---G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 459 ---GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred ---CCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 999999999999999999988776666666555
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.2e-25 Score=195.71 Aligned_cols=276 Identities=16% Similarity=0.231 Sum_probs=226.1
Q ss_pred CCCCCCCCCCCCCccCCCCCCCcccceeee------EEEeec-cccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226 56 SPLSSPRHPFNPTAAAGSSSPETSSSYRCI------SSVLKK-DGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGR 127 (434)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h-~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~ 127 (434)
+++.+..++.+...++.+..++++..|+.. ..+.++ ++.|.+++| ++..|++.+.+|.|.-||+.+++....
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~ 105 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN 105 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE
Confidence 446666677777778888888888877763 445554 568999999 799999999999999999999999999
Q ss_pred ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226 128 LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205 (434)
Q Consensus 128 ~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 205 (434)
+....+.|++++.+|. .++.|+.||.+..+++..+....... +....+.|.+++|+|+
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~--------------------l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS--------------------LMRQKSRVLSLSWNPT 165 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee--------------------cccccceEEEEEecCC
Confidence 9999999999999985 88899999977777765443322221 1235689999999999
Q ss_pred CCEEEEEecCCcEEEEEcCCCeeEEEcc-------c-CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKCIETIQ-------A-HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLIL 277 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 277 (434)
+..+++|+.||.|++||+.++..+.... . ...-|.++.+-.++.|++|..-|.|.+||.. ...++.
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~------~gTLiq 239 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSI------FGTLIQ 239 (691)
T ss_pred ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEccc------Ccchhh
Confidence 9999999999999999999987766221 1 2335778888888899999999999999976 566777
Q ss_pred EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEecc
Q 046226 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWARE 357 (434)
Q Consensus 278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~ 357 (434)
....|...|.+++..++++++++++.|+.|..|........+........|...|.+++..+..+++|+.|..+.+-..+
T Consensus 240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR 319 (691)
T ss_pred hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence 78889999999999999999999999999999988766554555556678888999999998899999999888776544
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=197.93 Aligned_cols=342 Identities=15% Similarity=0.188 Sum_probs=255.9
Q ss_pred CCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCC-EEEEEeCCCeEEEe
Q 046226 46 RFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNG-FIYTGSDSNVIRIW 117 (434)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iw 117 (434)
+.....+.+.+.+++...++--..++.+-.++.+-.++. +-+|+.-.+.|+.++| ||+ ++++|+..|.+.+|
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 344455566677777766666777777777777555443 5566655699999999 555 77888888999999
Q ss_pred cCCCceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCcee--------------eEeee--------
Q 046226 118 KQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKH--------------VKLAT-------- 172 (434)
Q Consensus 118 d~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~--------------~~~~~-------- 172 (434)
|++..+.+..+. .|.+.|....|-+. .+++++.|+.+++|-.++++.... ++...
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 999988877765 78899999999887 888999999999996653332100 00000
Q ss_pred --------------------c-----cCC----C---------CceeEEE------------------------------
Q 046226 173 --------------------I-----PKT----G---------GAVRNLI------------------------------ 184 (434)
Q Consensus 173 --------------------~-----~~~----~---------~~~~~~~------------------------------ 184 (434)
. ... + ..+..+.
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 0 000 0 0000000
Q ss_pred ------eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc---ccCccCeEEEEEcCCC-eEEEEe
Q 046226 185 ------VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDG-VLYSAS 254 (434)
Q Consensus 185 ------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~-~l~s~~ 254 (434)
.....+......+++++.++.|++.+.|+..|.|-+|++++|-....+ ..|..+|+.++...-+ .+++++
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~ 512 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG 512 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEcc
Confidence 000011223367899999999999999999999999999999888888 5799999999998777 899999
Q ss_pred CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226 255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC 334 (434)
Q Consensus 255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 334 (434)
.+|.+.+||.. ...+...+. -...+..+.++.....++.+..|-.|+++|.. ..+....+.+|.+.|++
T Consensus 513 ~~Gilkfw~f~------~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~----t~kvvR~f~gh~nritd 581 (910)
T KOG1539|consen 513 ADGILKFWDFK------KKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVV----TRKVVREFWGHGNRITD 581 (910)
T ss_pred CcceEEEEecC------Ccceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEch----hhhhhHHhhccccceee
Confidence 99999999987 222332322 33567888888888899999999999999974 33445577899999999
Q ss_pred EEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-CeEEEEecC
Q 046226 335 LASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-GVLKMWRVT 411 (434)
Q Consensus 335 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~v~iw~~~ 411 (434)
++|+ |++|++++.|++|++||+.++ .++-.+. -..+.+.+.|+|+ |++|||...| .-|++|.-.
T Consensus 582 ~~FS~DgrWlisasmD~tIr~wDlpt~---~lID~~~-vd~~~~sls~SPn---------gD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 582 MTFSPDGRWLISASMDSTIRTWDLPTG---TLIDGLL-VDSPCTSLSFSPN---------GDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred eEeCCCCcEEEEeecCCcEEEEeccCc---ceeeeEe-cCCcceeeEECCC---------CCEEEEEEecCceEEEEEch
Confidence 9986 779999999999999999998 5554442 3678899999999 9999999999 679999744
No 127
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2.5e-25 Score=208.59 Aligned_cols=272 Identities=17% Similarity=0.229 Sum_probs=216.1
Q ss_pred CCCCCCCCCCCCccCCCC--CCCccc-----------------ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226 57 PLSSPRHPFNPTAAAGSS--SPETSS-----------------SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIR 115 (434)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~ 115 (434)
.+++....+++..+++++ .|.... .-+.+.+...|.+.|+|+.| ||.+||+|++|+.|.
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 466777778888888888 432211 23345667889999999999 999999999999999
Q ss_pred EecCCC------------------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226 116 IWKQPE------------------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK 175 (434)
Q Consensus 116 iwd~~~------------------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (434)
||+... .+.+..+.+|...|.+++|+|+ ++++++.|++|.+|+..+.+.+..++
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~------ 168 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR------ 168 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee------
Confidence 998652 3466778899999999999998 89999999999999998776555553
Q ss_pred CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc------cCeEEEEEcCCC-
Q 046226 176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS------EPINALVVADDG- 248 (434)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~- 248 (434)
+|.+.|..+.|.|-|++|++-+.|++|++|++.+....+.+..+. ..+..+.|+|||
T Consensus 169 ----------------~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 169 ----------------GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred ----------------cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 799999999999999999999999999999988877777766543 367889999999
Q ss_pred eEEEEe----CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-----CC------------EEEEEcCCCeE
Q 046226 249 VLYSAS----DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-----DG------------LLYGGCTDGYI 307 (434)
Q Consensus 249 ~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i 307 (434)
+|++.. .-..+.|.+.. .+.....+-+|..++.++.|+|. .+ .+++|+.|+.|
T Consensus 233 ~las~nA~n~~~~~~~IieR~------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERG------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred eecchhhccCCcceeEEEecC------CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 777653 23457777543 66677788899999999999981 11 68899999999
Q ss_pred EEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226 308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 359 (434)
.||.....++.... . .-....|.+|+|+ |-.|++++.||+|.++.++..
T Consensus 307 SVW~T~~~RPl~vi-~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 307 SVWNTALPRPLFVI-H--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCCCchhhh-h--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 99997443333222 2 2234579999997 679999999999999998753
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.8e-27 Score=209.98 Aligned_cols=234 Identities=16% Similarity=0.221 Sum_probs=189.3
Q ss_pred EEEEE---cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeC---CEEEEEEcCCeEEEeecCCCCCce
Q 046226 96 LCIAV---GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSH---DRVYAAYGDGKIRVWRSTWDNGVK 166 (434)
Q Consensus 96 ~~~~~---~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~~~s~dg~i~vwd~~~~~~~~ 166 (434)
..+.| ..++|||++..|.|.+||+.. .+.+..+..|+..++++.|++ +.|++|+.||.|++||++..+...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 34555 789999999999999999987 566678899999999999986 499999999999999998776655
Q ss_pred eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEE
Q 046226 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVV 244 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~ 244 (434)
.+. +....|++|+|+| .+..|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|
T Consensus 171 t~~----------------------~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 171 TFR----------------------SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred ccc----------------------ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 553 5778899999998 4788999999999999999864 577788899999999999
Q ss_pred cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE-EEEEcC--CCeEEEEEcCccccccc
Q 046226 245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL-LYGGCT--DGYIHYWHKGWFSAQLQ 320 (434)
Q Consensus 245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~--dg~i~i~d~~~~~~~~~ 320 (434)
+|++ +|++||.|+.|+|||+....... ...+ ....++.++.|-|...+ |++++. |-.|+|||++. +..
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~----~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR---PYI 300 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKP----KHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR---PYI 300 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccc----eeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeecc---ccc
Confidence 9988 99999999999999987222111 1111 13368999999997654 555543 77999999964 334
Q ss_pred ccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEeccCC
Q 046226 321 YGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 321 ~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~ 359 (434)
....+..|...++.++|.+ ..+.+++.||+|..-.+++.
T Consensus 301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 4457788999999999975 38999999999877666654
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-23 Score=187.67 Aligned_cols=283 Identities=17% Similarity=0.195 Sum_probs=221.9
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc-eeEeeccCC-CccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCc
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF-TECGRLKAK-TSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGV 165 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~-~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~ 165 (434)
-..+|.|||| +.+.||.+-.||.|.||++... -+...+.++ ...|.+++|.++ +|++.+.+|.|.-||+.+.+..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 4678999999 7788999999999999999763 333444444 568999999965 9999999999999999877766
Q ss_pred eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE--EcccCccCeEEEE
Q 046226 166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE--TIQAHSEPINALV 243 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~ 243 (434)
.... ...+.|++++.+|.+..++.|++||.++.++...++... .+...++.|.++.
T Consensus 104 ~~~d----------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 104 YNID----------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred EEec----------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 6553 467889999999999999999999988888887776443 3445678999999
Q ss_pred EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc----cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226 244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA----KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ 318 (434)
Q Consensus 244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 318 (434)
|++++ .+++|+.||.|++||....+ ........+.. ...-|.++.+-. ...|++|...|+|.+||.. .
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~--t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~----~ 234 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQ--TLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSI----F 234 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCc--eEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEccc----C
Confidence 99999 79999999999999987222 12211111111 223466777764 4679999999999999964 3
Q ss_pred ccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCc-eeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226 319 LQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGR-HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT 395 (434)
Q Consensus 319 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 395 (434)
..+.+....|...|.|++.+ ++++++++.|+.|.-|...+... +........|...|.+++..++ .
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-----------~ 303 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-----------A 303 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-----------e
Confidence 44455667889999999885 56999999999999998877643 4455566788899999999965 8
Q ss_pred EEEeecCCeEEEEecCCC
Q 046226 396 ICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 396 l~s~~~Dg~v~iw~~~~~ 413 (434)
|++||.|+.+.+=.....
T Consensus 304 l~sgG~d~~l~i~~s~~~ 321 (691)
T KOG2048|consen 304 LISGGRDFTLAICSSREF 321 (691)
T ss_pred EEecceeeEEEEcccccc
Confidence 999999999998776653
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7e-25 Score=196.46 Aligned_cols=296 Identities=19% Similarity=0.232 Sum_probs=215.1
Q ss_pred cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccC-C-----------------------CccEEEEEEeCC--EEEE
Q 046226 94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKA-K-----------------------TSMVVAMEVSHD--RVYA 147 (434)
Q Consensus 94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~-----------------------~~~v~~l~~~~~--~l~~ 147 (434)
...|++...+++++|+.+|.|++|+.++.....++.. | -....++.|++. .|.+
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klsc 341 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSC 341 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEE
Confidence 3467888999999999999999999877554444321 0 012356678764 7888
Q ss_pred EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-----------CCEEEEEecCC
Q 046226 148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-----------DDTLYSASLDK 216 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~s~~~dg 216 (434)
...|..++|||++.-+.+...... .-|..-|+++.--|- ...|.+++.|+
T Consensus 342 VYndhSlYvWDvrD~~kvgk~~s~-------------------lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~ 402 (1080)
T KOG1408|consen 342 VYNDHSLYVWDVRDVNKVGKCSSM-------------------LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDG 402 (1080)
T ss_pred EEcCceEEEEeccccccccceeee-------------------eeccceeeeeccccccccCcccccCCccceeEecCCC
Confidence 899999999999876554433211 136666666655441 23589999999
Q ss_pred cEEEEEcCCCeeEEEc-------------------------------------ccCccCeEEEEEcCCC-eEEEEeCCCe
Q 046226 217 TIKVWRIRDSKCIETI-------------------------------------QAHSEPINALVVADDG-VLYSASDDAT 258 (434)
Q Consensus 217 ~i~vwd~~~~~~~~~~-------------------------------------~~~~~~v~~~~~~~~~-~l~s~~~dg~ 258 (434)
+|++||++.+..-..+ ......+.+++++|++ +|++|..-|.
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 9999999753110000 0123478999999999 9999999999
Q ss_pred EEEEecccccCcceeEEEEEecccccCeEEEEEec---CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce---
Q 046226 259 VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL---DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV--- 332 (434)
Q Consensus 259 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--- 332 (434)
+++||+. .......+..|+..|.++.|+. ..++|++++.|.-|+|||+.. ...+.+++.+|...|
T Consensus 483 lrVy~Lq------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---ny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 483 LRVYDLQ------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---NYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred eEEEEeh------hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---ccchhhhhcccccceeEE
Confidence 9999987 4445667788999999999986 357899999999999999743 222223333333333
Q ss_pred ----------------------------------------------EEEEeeC--CEEEEecCCCcEEEEeccCCCceee
Q 046226 333 ----------------------------------------------MCLASVA--NYVISGSADSTSRVWAREQDGRHTM 364 (434)
Q Consensus 333 ----------------------------------------------~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~ 364 (434)
..|+.++ +++++++.|..|+|||+++++..+.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 4444443 4789999999999999999955444
Q ss_pred EEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccccccccCceeEe
Q 046226 365 LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGHLNKTNGHEYFE 430 (434)
Q Consensus 365 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~~~~~~g~~~~~ 430 (434)
+..-.+|.+....+...|. |-||++.+.|.++.++|+.+++. +....||...+
T Consensus 634 FKgs~~~eG~lIKv~lDPS---------giY~atScsdktl~~~Df~sgEc----vA~m~GHsE~V 686 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDPS---------GIYLATSCSDKTLCFVDFVSGEC----VAQMTGHSEAV 686 (1080)
T ss_pred ecccccCCCceEEEEECCC---------ccEEEEeecCCceEEEEeccchh----hhhhcCcchhe
Confidence 5555567778888888888 99999999999999999999985 45556666544
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.4e-26 Score=205.82 Aligned_cols=283 Identities=18% Similarity=0.213 Sum_probs=213.9
Q ss_pred EEEEEE--cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCC---ccEEEEEEeC---CEEEEEEcCCeEEEeecCCC
Q 046226 95 ILCIAV--GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKT---SMVVAMEVSH---DRVYAAYGDGKIRVWRSTWD 162 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~---~~v~~l~~~~---~~l~~~s~dg~i~vwd~~~~ 162 (434)
..+|+. +-..|+.++. ..++||.+.. .++...++... ..+..+.|.. ++|++++..|.|.+||+...
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 445555 4455555554 4677776543 12222222211 2345566764 48999999999999999763
Q ss_pred CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 241 (434)
...+.+. .+..|...++++.|++. ..+|++|+.||+|++||++..+...++.+....|++
T Consensus 121 ~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 121 IRNKLLT-------------------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred ccchhhh-------------------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 1111110 12369999999999985 567889999999999999999999999999999999
Q ss_pred EEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 242 LVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 242 ~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
+.|+|.. .++++.+.|.+.+||++ +.......+..|.++|.++.|+|++.+||+|+.|+.|+|||+.......
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlR-----qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLR-----QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeecc-----CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence 9999865 89999999999999999 4556667788999999999999999999999999999999987543322
Q ss_pred cccCcccCcccceEEEEeeC---CEEEEec--CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 320 QYGGALQGHTHAVMCLASVA---NYVISGS--ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~~---~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
.. .+ ....+|.++.|-+ .+|++++ .|-.|+|||++-. ..+...+..|...++.++|.... ..
T Consensus 257 ~~--tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d--------~~ 323 (839)
T KOG0269|consen 257 KH--TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGD--------RI 323 (839)
T ss_pred ee--EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCC--------ce
Confidence 21 11 2335778888864 3777776 4789999999864 46788899999999999997642 56
Q ss_pred EEEEeecCCeEEEEecCCCCc
Q 046226 395 TICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 395 ~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
.+.+++.||+|..-.+++...
T Consensus 324 ~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 324 NLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred eeEeecCccHHHHhhhhcccC
Confidence 899999999998877776644
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=1.5e-24 Score=184.78 Aligned_cols=298 Identities=15% Similarity=0.184 Sum_probs=218.8
Q ss_pred cceeeeEEEeeccccEEEEEE----cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCCccEEEEEEeCC---EEEEE
Q 046226 80 SSYRCISSVLKKDGQILCIAV----GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKTSMVVAMEVSHD---RVYAA 148 (434)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~---~l~~~ 148 (434)
.........+-|.++|++++| +-+++|+|..-|+|-+||+.+ ...+..+..|..+|.+|.|+|. .+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 344445567789999999999 348999999999999999942 3345567789999999999995 89999
Q ss_pred EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee
Q 046226 149 YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC 228 (434)
Q Consensus 149 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 228 (434)
+.||+|++-|++.......+.. ......+..+.|+.+...++.+..=|...+||++++..
T Consensus 254 SyDGtiR~~D~~~~i~e~v~s~--------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNISEEVLSL--------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred ccCceeeeeeecchhhHHHhhc--------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 9999999999875533222211 01334567788888888888888888999999998654
Q ss_pred -EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226 229 -IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 229 -~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
...+..|...|..++++|.. +|++++.|++.+|||++....... +......|...|.+..|+|.+..|++.+.|.
T Consensus 314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCC
Confidence 66777788999999999988 999999999999999995444433 2455667889999999999888899999999
Q ss_pred eEEEEEcCcccccccccCccc---Cccc--ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeE
Q 046226 306 YIHYWHKGWFSAQLQYGGALQ---GHTH--AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRC 377 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~~~~~~~---~~~~--~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~ 377 (434)
.|+|||..-..........+. .+.. ......|+ .+++++|-.-..|-|+|-..+ +.+..+..-.. .|.+
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~---q~v~el~~P~~~tI~~ 468 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG---QMVCELHDPESSTIPS 468 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC---EEeeeccCcccccccc
Confidence 999999742112222111111 1111 12233454 558999999899999998876 65665433322 4544
Q ss_pred -EEEeecccCCCCCCccc-EEEEeecCCeEEEEecC
Q 046226 378 -AIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRVT 411 (434)
Q Consensus 378 -~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~~ 411 (434)
..|+|. +. +++-++.-|.|+||.-+
T Consensus 469 vn~~HP~---------~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 469 VNEFHPM---------RDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ceeeccc---------ccceeccCCccceEEEEecC
Confidence 577887 55 45555567889988644
No 133
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.3e-23 Score=184.50 Aligned_cols=271 Identities=11% Similarity=0.044 Sum_probs=187.3
Q ss_pred CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EE-EEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RV-YAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+ .+ ++++.++.|++||..+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--------- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---------
Confidence 46788999999999999999988888876544 678999987 45 456678999999987654433221
Q ss_pred ceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD 256 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d 256 (434)
.+ ..+..++|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++++|++ .++++..+
T Consensus 71 -------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~ 135 (300)
T TIGR03866 71 -------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSET 135 (300)
T ss_pred -------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecC
Confidence 12 234678899999977655 5689999999998887777753 3346889999999 77777766
Q ss_pred C-eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCccc-Ccc--cc
Q 046226 257 A-TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQ-GHT--HA 331 (434)
Q Consensus 257 g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~-~~~--~~ 331 (434)
+ .+.+||... ........ ....+..++|++++++|+++ ..++.|++||+........+..... .+. ..
T Consensus 136 ~~~~~~~d~~~------~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~ 208 (300)
T TIGR03866 136 TNMAHFIDTKT------YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ 208 (300)
T ss_pred CCeEEEEeCCC------CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence 4 567778751 11111111 22345779999999988655 4699999999976543222111100 011 11
Q ss_pred eEEEEe--eCCEE-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe-ecCCeEEE
Q 046226 332 VMCLAS--VANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG-SLDGVLKM 407 (434)
Q Consensus 332 v~~~~~--~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~v~i 407 (434)
...+.+ +++++ ++.+.++.+.+||++++ +.+..+ .+...+.+++|+|+ +++|+++ +.+|.|++
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~~~-~~~~~~~~~~~~~~---------g~~l~~~~~~~~~i~v 275 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLDYL-LVGQRVWQLAFTPD---------EKYLLTTNGVSNDVSV 275 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEE-EeCCCcceEEECCC---------CCEEEEEcCCCCeEEE
Confidence 233444 46664 44456778999999876 333333 24457889999999 8888876 56999999
Q ss_pred EecCCCCccc
Q 046226 408 WRVTRPKSSC 417 (434)
Q Consensus 408 w~~~~~~~~~ 417 (434)
||+.+++.+.
T Consensus 276 ~d~~~~~~~~ 285 (300)
T TIGR03866 276 IDVAALKVIK 285 (300)
T ss_pred EECCCCcEEE
Confidence 9999887644
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.7e-26 Score=206.87 Aligned_cols=249 Identities=20% Similarity=0.313 Sum_probs=208.8
Q ss_pred EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN 182 (434)
Q Consensus 105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
+.....+-.+++||... +..|...|.++..-. ..+++|+.|..+-+|.+.....+..+
T Consensus 7 ~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-------------- 66 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-------------- 66 (825)
T ss_pred cceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee--------------
Confidence 34445556677887643 446777788877633 37888888999999988765554443
Q ss_pred EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226 183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV 261 (434)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i 261 (434)
.+|..+|.++.|+++..+|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+ +.+.|+.|+.+++
T Consensus 67 --------~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 67 --------TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred --------eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccccccee
Confidence 3799999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-
Q 046226 262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN- 340 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 340 (434)
||++ ...+...+.+|...+..+.|+|+|++++.|++|..++|||+. ..++...+..|...+..+.+++.
T Consensus 139 wD~R------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~----agk~~~ef~~~e~~v~sle~hp~e 208 (825)
T KOG0267|consen 139 WDIR------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT----AGKLSKEFKSHEGKVQSLEFHPLE 208 (825)
T ss_pred hhhh------ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc----ccccccccccccccccccccCchh
Confidence 9988 455667777899999999999999999999999999999975 34455677889999999998754
Q ss_pred -EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226 341 -YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403 (434)
Q Consensus 341 -~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 403 (434)
++++|+.|+++++||+++- +.+...+.....|.+.+|.|+ +..+.+|..+.
T Consensus 209 ~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~---------~~~~~~G~q~s 260 (825)
T KOG0267|consen 209 VLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPD---------GKIVLSGEQIS 260 (825)
T ss_pred hhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCC---------ceeeecCchhh
Confidence 7889999999999999975 677777777889999999999 77777776553
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.9e-24 Score=181.31 Aligned_cols=281 Identities=10% Similarity=0.139 Sum_probs=216.0
Q ss_pred cccEEEEEE--cCCEEEEEeCCCeEEEecCCC--ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC
Q 046226 92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPE--FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG 164 (434)
Q Consensus 92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~ 164 (434)
.+.|+++.| ...+|++|+.||+++||.+.. ...+..+.-...+|.+..|.|+ .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 578999999 788999999999999997743 4456666667889999999997 688888899999999976654
Q ss_pred ceeeEeeeccCCCCceeEEEeccccccCc-CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226 165 VKHVKLATIPKTGGAVRNLIVGKDKMMKH-MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV 243 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 243 (434)
.+.-... ++ ...+.....++++++|+..+..|.|.+....+++.+..++ -.+.|..++
T Consensus 293 ~k~~~~~--------------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 293 TKLKPPY--------------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred ccccCCC--------------------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 4333211 22 2356777889999999999999999999999999988887 567899999
Q ss_pred EcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc--ccc
Q 046226 244 VADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS--AQL 319 (434)
Q Consensus 244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~ 319 (434)
|+.++ .|++++.+|.|.+||++ .......+... .-.-++++.++++.+||+|+..|.|.|||..... ...
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~------~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLR------QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecC------CcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCC
Confidence 99999 88888999999999998 22333333222 1234678888999999999999999999965322 222
Q ss_pred cccCcccCcccceEEEEeeC--CEEEEec--CCCcEEEEeccCCCceeeEEEee---ccccceeEEEEeecccCCCCCCc
Q 046226 320 QYGGALQGHTHAVMCLASVA--NYVISGS--ADSTSRVWAREQDGRHTMLAVLV---GHRGPIRCAIAFLGRFGEETEDE 392 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~ 392 (434)
+....+..-...|..+.|+. +.||.++ .+..+|+-.+.+- .....++ ..-+.|+|++|+|.
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~--------- 493 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPN--------- 493 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCC---------
Confidence 33344445566788999974 4666665 4678999888765 3333333 33456899999999
Q ss_pred ccEEEEeecCCeEEEEecC
Q 046226 393 YCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 393 ~~~l~s~~~Dg~v~iw~~~ 411 (434)
+.+||.|-.+|.|.+|.+.
T Consensus 494 sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 494 SGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CceEEeecCCCceeeEeec
Confidence 8999999999999999975
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.5e-25 Score=185.91 Aligned_cols=254 Identities=18% Similarity=0.196 Sum_probs=186.5
Q ss_pred CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE-EEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEE
Q 046226 143 DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN-LIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKV 220 (434)
Q Consensus 143 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~v 220 (434)
++++.|+.|..|.|||+.-...+...-... ........ .........+|+..|.+++|+.. .+.|++|+.|.+|++
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LG--s~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLG--SKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeec--hhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 389999999999999987554433221111 00000000 00011112369999999999875 567899999999999
Q ss_pred EEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCE
Q 046226 221 WRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGL 297 (434)
Q Consensus 221 wd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 297 (434)
||+.++++...+..|.+.|.++.|+|.. .|++|+.|++|.+.|.|..... . .. -...+.|..++|.|. ...
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--~-~~---wk~~g~VEkv~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--G-KE---WKFDGEVEKVAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--C-ce---EEeccceEEEEecCCCcee
Confidence 9999999999999999999999999987 9999999999999999831111 1 11 112367899999995 456
Q ss_pred EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP 374 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 374 (434)
+++++.||+|+-+|+|... +....++.|...|.+++++ ++++++++.|+.|++|++..... ..+..-.-.-+.
T Consensus 345 f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~r 420 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGR 420 (463)
T ss_pred EEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccc
Confidence 7888899999999998654 4445778999999999987 56999999999999999876421 222221112234
Q ss_pred eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
..|.++.|+. ...++.||..+.++|||+.+..+.
T Consensus 421 l~c~~~~~~~--------a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 421 LHCFALDPDV--------AFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eeecccCCCc--------ceEEEecCccceEEEeecccChhH
Confidence 6677777774 568999999999999999877643
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1.9e-24 Score=191.29 Aligned_cols=119 Identities=24% Similarity=0.239 Sum_probs=103.0
Q ss_pred CeEEEEEec-CCCEEEEEcCCCeEEEEEcCccc---ccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEecc
Q 046226 285 PVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFS---AQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWARE 357 (434)
Q Consensus 285 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 357 (434)
.|+.+.|+| |...|++++.||.|++|.+.... ........+..|...|+.+.|+ .+.|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 467778888 67789999999999999986543 2334456778999999999998 4699999999999999999
Q ss_pred CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
+. .....+.+|.+.|.+++|+|+ |+.+++.+.||+|++|+-.+++.
T Consensus 709 ~~---~~~~~l~gHtdqIf~~AWSpd---------Gr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 709 NA---KLYSRLVGHTDQIFGIAWSPD---------GRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hh---hhhheeccCcCceeEEEECCC---------CcceeeeecCceEEEeCCCCCCC
Confidence 98 677788999999999999999 99999999999999999887654
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-25 Score=201.79 Aligned_cols=227 Identities=16% Similarity=0.261 Sum_probs=195.4
Q ss_pred cccccCCCCCCCCCCCCCccCCCCCCCcccceee-----eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce
Q 046226 51 ISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-----ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT 123 (434)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~ 123 (434)
.-.|+..+.........+.+.+++.+..+..|.+ +-.|.+|+.+|.|+.| ...+|++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 3345555655555555677777776665555444 5568999999999999 78899999999999999999999
Q ss_pred eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226 124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201 (434)
Q Consensus 124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 201 (434)
.+.++.+|...+..+.|+|- +.+.++.|+.+++||++...+...+. +|...|.++.
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~----------------------s~~~vv~~l~ 161 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK----------------------SHTRVVDVLR 161 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec----------------------CCcceeEEEe
Confidence 99999999999999999996 66778889999999998776666653 6999999999
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT 280 (434)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 280 (434)
|+|+|+++++|++|.+++|||+..|+.+..|+.|.+.+..+.|+|.. ++++|+.|+++++||++ ....+....
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle------tfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE------TFEVISSGK 235 (825)
T ss_pred ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccc------eeEEeeccC
Confidence 99999999999999999999999999999999999999999999998 99999999999999987 566666666
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCC
Q 046226 281 AKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 281 ~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
.....|.+.+|+|++..+++|....
T Consensus 236 ~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccCCceeeeecCCceeeecCchhh
Confidence 6678999999999999999987654
No 139
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-24 Score=181.82 Aligned_cols=235 Identities=17% Similarity=0.270 Sum_probs=184.7
Q ss_pred EEEEE---------cCCEEEEEeCCCeEEEecCCCce---e------------------EeeccCCCccEEEEEEeCC--
Q 046226 96 LCIAV---------GNGFIYTGSDSNVIRIWKQPEFT---E------------------CGRLKAKTSMVVAMEVSHD-- 143 (434)
Q Consensus 96 ~~~~~---------~~~~l~tg~~dg~i~iwd~~~~~---~------------------~~~~~~~~~~v~~l~~~~~-- 143 (434)
.|++| .|+++|.|+.|..|.|||+.-.. + -..-.+|+..|.++.|+.+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 67777 36899999999999999974210 0 0112368889999999875
Q ss_pred -EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEE
Q 046226 144 -RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVW 221 (434)
Q Consensus 144 -~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vw 221 (434)
.|++|+.|.+|++||+.+++....+. .|.+.|.++.|+|. ...|++|+.|++|.+.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSIT----------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALK 314 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehh----------------------hcCCceeEEEecCCCceEEEeccccceEEee
Confidence 79999999999999999988777663 48999999999985 5789999999999999
Q ss_pred EcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEE
Q 046226 222 RIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLL 298 (434)
Q Consensus 222 d~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 298 (434)
|.+........-.-.+.|..++|.+.. .++++..||.|+-+|+| .....+..+..|..+|.+++++.. -.++
T Consensus 315 D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R-----~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 315 DCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR-----NPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred eccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC-----CCCCceeEEEeccCCcceEEecCCCCcce
Confidence 998532222111245689999999887 78888999999999999 333678888999999999999884 4678
Q ss_pred EEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC---EEEEecCCCcEEEEeccCC
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN---YVISGSADSTSRVWAREQD 359 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~ 359 (434)
++++.|+.|++|++............+.- +...|++++.. .++.|+..+.++|||+.+.
T Consensus 390 ~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 390 STASTDKVVKLWKFDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eeccccceEEEEeecCCCCcccccccccc--cceeecccCCCcceEEEecCccceEEEeecccC
Confidence 89999999999999766555444333322 23567777644 8899999999999999876
No 140
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=8.9e-23 Score=182.43 Aligned_cols=359 Identities=16% Similarity=0.189 Sum_probs=257.5
Q ss_pred CcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEE------------EeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226 50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISS------------VLKKDGQILCIAV--GNGFIYTGSDSNVIR 115 (434)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~h~~~v~~~~~--~~~~l~tg~~dg~i~ 115 (434)
.+.+|.+-+++....+.+..+.+++.|.+.-.|+.... .-|..+.-+..-| +++.+++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45599999999999999999999999988766665332 2233445677777 778899999999999
Q ss_pred EecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc--------------------e----
Q 046226 116 IWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV--------------------K---- 166 (434)
Q Consensus 116 iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~--------------------~---- 166 (434)
+|..++ ......+.+|.+.|.+++|+|. +|++++.|.+-|++---..+.. .
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 998433 3445567899999999999975 9999999999998743211100 0
Q ss_pred --------eeEeee----------------------------cc--------------CCCCc----ee-----------
Q 046226 167 --------HVKLAT----------------------------IP--------------KTGGA----VR----------- 181 (434)
Q Consensus 167 --------~~~~~~----------------------------~~--------------~~~~~----~~----------- 181 (434)
.++... .| ..+.. ..
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 000000 00 00000 00
Q ss_pred -----------EEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-----cEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226 182 -----------NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-----TIKVWRIRDSKCIETIQAHSEPINALVVA 245 (434)
Q Consensus 182 -----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 245 (434)
.+.....++.+|...|.+++.+|+++++++++... .|++|+..+...++.+.+|.-.|+.|+|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 00000115678999999999999999999997643 69999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226 246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA 324 (434)
Q Consensus 246 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 324 (434)
||+ +|++.+.|.++.+|... ..............|..-|....|+|++.++++++.|.+|++|..............
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~--~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQ--EDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred CCCcEEEEeecCceEEeeeee--cccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 999 99999999999999864 111111112336788899999999999999999999999999987654222211113
Q ss_pred ccCcccceEEEEee-------CCEEEEecCCCcEEEEecc------CCCcee---eEEEeeccccceeEEEEeecccCCC
Q 046226 325 LQGHTHAVMCLASV-------ANYVISGSADSTSRVWARE------QDGRHT---MLAVLVGHRGPIRCAIAFLGRFGEE 388 (434)
Q Consensus 325 ~~~~~~~v~~~~~~-------~~~l~s~~~dg~i~iwd~~------~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~ 388 (434)
...+...|+++++. +..++.|-..|.|.+|... +..... .+....+|...|+.+.|.|.- +..
T Consensus 660 ~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~-~~~ 738 (764)
T KOG1063|consen 660 CLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC-SDD 738 (764)
T ss_pred hhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc-ccc
Confidence 44677788888874 2378899999999999965 211111 222344678899999999862 111
Q ss_pred CC--CcccEEEEeecCCeEEEEecC
Q 046226 389 TE--DEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 389 ~~--~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+. .+...|++|+.|..++|+++.
T Consensus 739 ~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 739 WVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccceeEEeeecccceeEEeecc
Confidence 11 124567999999999999875
No 141
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-23 Score=173.23 Aligned_cols=278 Identities=13% Similarity=0.189 Sum_probs=202.8
Q ss_pred CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC----CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH----DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
+.+|++...|.|++||..+++.+..++++...++.+.|.. +.+++|+.||+|++||++.......+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~------- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT------- 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-------
Confidence 5688999999999999999999999999999999999965 48999999999999999887665555321
Q ss_pred ceeEEEeccccccCcC-CCeEEEEEecCCCEEEEEec----CCcEEEEEcCCCee-EEEc-ccCccCeEEEEEcCCC--e
Q 046226 179 AVRNLIVGKDKMMKHM-GPITSIAINVSDDTLYSASL----DKTIKVWRIRDSKC-IETI-QAHSEPINALVVADDG--V 249 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~--~ 249 (434)
++. .+..|++.+..++.+++|+. +-.|.+||++..+. +..+ ..|.+.|+++.|+|.. +
T Consensus 114 -------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnl 180 (376)
T KOG1188|consen 114 -------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNL 180 (376)
T ss_pred -------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCe
Confidence 233 46777777767888888754 66899999998765 5554 4599999999999988 9
Q ss_pred EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCccc--
Q 046226 250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ-- 326 (434)
Q Consensus 250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-- 326 (434)
|++|+.||.|.+||+... .....+.....+...|..+.|..++ +.|.+-+..+...+|+++.......+.....
T Consensus 181 LlSGSvDGLvnlfD~~~d---~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 181 LLSGSVDGLVNLFDTKKD---NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred EEeecccceEEeeecCCC---cchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 999999999999999822 2222333344566789999998876 4688888999999999987664433322100
Q ss_pred -------CcccceEEEEee-CCEEEE-ecCCCcEEEEecc---CCCceeeEEEeec-cccceeEEEEeecccCCCCCCcc
Q 046226 327 -------GHTHAVMCLASV-ANYVIS-GSADSTSRVWARE---QDGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEY 393 (434)
Q Consensus 327 -------~~~~~v~~~~~~-~~~l~s-~~~dg~i~iwd~~---~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~ 393 (434)
.-..-|.+.... ...++. |+.-+...++-+. ++...+.+..+.+ |..-|+++.|... +
T Consensus 258 ~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~---------~ 328 (376)
T KOG1188|consen 258 DDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVK---------N 328 (376)
T ss_pred hhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcc---------c
Confidence 001112222222 234444 4435555555443 3434456666776 6777888888765 7
Q ss_pred cEEEEeecCCeEEEEecCC
Q 046226 394 CTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 394 ~~l~s~~~Dg~v~iw~~~~ 412 (434)
.++.|||+||.+.+|..+.
T Consensus 329 ~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 329 DVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred ceeeccCCCceEEEEecCC
Confidence 8999999999999999643
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=165.45 Aligned_cols=278 Identities=14% Similarity=0.232 Sum_probs=203.1
Q ss_pred EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226 95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKL 170 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~ 170 (434)
-.|+.| .|.+||+|+.||.|.|||+.+...-..+.+|..+|.+++|+++ .|++++.|..|.+||+..+.....+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 688999 8999999999999999999999988889999999999999998 89999999999999999888777664
Q ss_pred eeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEccc-Cc----cCeEEEEE
Q 046226 171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQA-HS----EPINALVV 244 (434)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~----~~v~~~~~ 244 (434)
...+|+.+.|+|.. +..++.-.+..-.+.++..++. ..+.. .. ..-.+..|
T Consensus 105 ----------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~f 161 (405)
T KOG1273|consen 105 ----------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVF 161 (405)
T ss_pred ----------------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccc
Confidence 67889999999854 3444444455555666654221 11111 11 11223356
Q ss_pred cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccc-cCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc----
Q 046226 245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY-SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ---- 318 (434)
Q Consensus 245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---- 318 (434)
.+.| ++++|...|.+.++|.. ..+.+..++... ..|..+.++..|++|+.-+.|..|+.|+++.-...
T Consensus 162 dr~g~yIitGtsKGkllv~~a~------t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 162 DRRGKYIITGTSKGKLLVYDAE------TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred cCCCCEEEEecCcceEEEEecc------hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccC
Confidence 7777 99999999999999977 234444444333 67889999999999999999999999998632211
Q ss_pred -ccccCcccCc---c-cceEEEEeeCCEEEEecC-CCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeecccCCCCCC
Q 046226 319 -LQYGGALQGH---T-HAVMCLASVANYVISGSA-DSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLGRFGEETED 391 (434)
Q Consensus 319 -~~~~~~~~~~---~-~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~ 391 (434)
.+..+.++.- . -.-.|++-+|.|+++++. -..++||....| .+++.+.|.. .....+.|+|-
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~-------- 304 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPV-------- 304 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccc--------
Confidence 1111111110 0 011333345778877764 468999999888 7888888877 56778999998
Q ss_pred cccEEEEeecCCeEEEEecCCCCc
Q 046226 392 EYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 392 ~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
...|++- ..|.|+||......+
T Consensus 305 -rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 305 -RPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred -eeeeeec-cCCceEEEEeecccc
Confidence 5567776 789999999876554
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=6e-23 Score=168.02 Aligned_cols=299 Identities=16% Similarity=0.204 Sum_probs=213.0
Q ss_pred ccceeeeEEE-eeccccEEEEEE-------cCCEEEEEeCCCeEEEecCCCc---eeEeecc--CCCccEEEEEEeCC--
Q 046226 79 SSSYRCISSV-LKKDGQILCIAV-------GNGFIYTGSDSNVIRIWKQPEF---TECGRLK--AKTSMVVAMEVSHD-- 143 (434)
Q Consensus 79 ~~~~~~~~~~-~~h~~~v~~~~~-------~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~--~~~~~v~~l~~~~~-- 143 (434)
.+.+++...+ ..|+.+|..++| .-+.++|.+. +.+.+|+.... ..++.+. .|......++|.-+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 4556666554 458899999999 2456777765 57888876542 2333332 36667777787643
Q ss_pred ----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcE
Q 046226 144 ----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTI 218 (434)
Q Consensus 144 ----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i 218 (434)
.+++++.-|.|+|.|+.+++....+. +|...|+.+.++|+. +++++++.|..|
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~----------------------ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYR----------------------GHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhcccee----------------------ccCccchhhhcCCCCCcEEEEecCCceE
Confidence 78888899999999998877766663 799999999999975 688899999999
Q ss_pred EEEEcCCCeeEEEcc---cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc------------ee---------
Q 046226 219 KVWRIRDSKCIETIQ---AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ------------LH--------- 273 (434)
Q Consensus 219 ~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~------------~~--------- 273 (434)
++|++++..++..+. +|.+.|.++.|+.++ ++++++.|..|++|++....-.. ..
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999999998875 599999999999999 99999999999999986211000 00
Q ss_pred -EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc----------ccCcccCcccceEEEEe--e--
Q 046226 274 -TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ----------YGGALQGHTHAVMCLAS--V-- 338 (434)
Q Consensus 274 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~v~~~~~--~-- 338 (434)
....+...|...|-|+.|- |+++++-+-++.|..|.......... ....+.-....|+-+.| +
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 0001223455555566554 57899988899999998632221111 11122222333444433 3
Q ss_pred CCEEEEecCCCcEEEEeccCCCceeeEEEe-eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 339 ANYVISGSADSTSRVWAREQDGRHTMLAVL-VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 339 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
++.|+.|...|.|++||+++.....+.... .-....|...+|+.+ +.+|+...+|++|--||--
T Consensus 319 ~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d---------gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD---------GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc---------CcEEEEEeCCCcEEEEEee
Confidence 679999999999999999987543222211 112346889999998 8999999999999999853
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=186.19 Aligned_cols=288 Identities=19% Similarity=0.212 Sum_probs=196.8
Q ss_pred CCCCccCCCCCCCcccceee-----------eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEee--cc
Q 046226 65 FNPTAAAGSSSPETSSSYRC-----------ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGR--LK 129 (434)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~ 129 (434)
...-.++.+..++.+..++. +..+..|.++|..+.| ....|++++.|.++++||+++.+++.. +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 33444455555555444333 2345679999999999 667899999999999999999988877 88
Q ss_pred CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCce--eeEe--eeccCC-CCceeEEEeccccccCcCCCeEE--
Q 046226 130 AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVK--HVKL--ATIPKT-GGAVRNLIVGKDKMMKHMGPITS-- 199 (434)
Q Consensus 130 ~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~-- 199 (434)
+|.+.|.+++|.+. .+++|+.||.|.|||++-...-. .+.. ...... ......+.........+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 99999999999875 78999999999999987544110 0000 000000 01111112222233346666666
Q ss_pred -EEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEc--------ccC---ccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226 200 -IAINVSDDTLYSASL-DKTIKVWRIRDSKCIETI--------QAH---SEPINALVVADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 200 -~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~--------~~~---~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
+.+..|...|++++. |+.|+|||+++....... ..| .-.+.++.....| +|++.+.|+.|.+||+.
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 666689999999887 999999999875433222 223 2356777777777 66666679999999987
Q ss_pred cccCcceeEEEEEeccccc--CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC---
Q 046226 266 FYSENQLHTLILTLTAKYS--PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--- 340 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 340 (434)
..... +...+.++.. --..-..+|++.++++|+.|...++|.+....... ..+.+|...|+++.|...
T Consensus 302 s~s~s----P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~---~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 302 SLSIS----PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP---ALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred ccCcC----chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh---hhhhCcceEEEEEeeccccCC
Confidence 32221 1222222111 11223468899999999999999999986544333 356699999999999743
Q ss_pred EEEEecCCCcEEEEeccCC
Q 046226 341 YVISGSADSTSRVWAREQD 359 (434)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~ 359 (434)
-++++++|..++||++.++
T Consensus 375 ~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 375 PVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceeeccCcceEEEeccCc
Confidence 5778899999999999765
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=181.71 Aligned_cols=248 Identities=18% Similarity=0.254 Sum_probs=196.5
Q ss_pred CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226 130 AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD 207 (434)
Q Consensus 130 ~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 207 (434)
.|..-|.++.++.. .+++| ..|.|+|||+........+. .+. .......|+++.+.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTg-GkgcVKVWdis~pg~k~Pvs------------qLd-----cl~rdnyiRSckL~pdgr 478 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTG-GKGCVKVWDISQPGNKSPVS------------QLD-----CLNRDNYIRSCKLLPDGR 478 (705)
T ss_pred ccCcEEEEEEecCCcceeEec-CCCeEEEeeccCCCCCCccc------------ccc-----ccCcccceeeeEecCCCc
Confidence 47777888888765 55555 56889999997653221111 111 113556799999999999
Q ss_pred EEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226 208 TLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS 284 (434)
Q Consensus 208 ~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 284 (434)
.|++|++-.++.|||+..... ...+....-...+++.+||. ..+++..||.|.|||+. ....+..+.+|..
T Consensus 479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh------nq~~VrqfqGhtD 552 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH------NQTLVRQFQGHTD 552 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc------cceeeecccCCCC
Confidence 999999999999999976543 23333334567789999999 88999999999999998 6678889999999
Q ss_pred CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCce
Q 046226 285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRH 362 (434)
Q Consensus 285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~ 362 (434)
.+.||.++++|..|.+|+-|.+|+.||++......+. .....|.++... +++|+.|-.++.+.|-.....
T Consensus 553 GascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp--- 624 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP--- 624 (705)
T ss_pred CceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-----hhhhhheecccCCCccceeeecccCcEEEEecCCc---
Confidence 9999999999999999999999999999866554443 234567777654 779999999999998887653
Q ss_pred eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccccc
Q 046226 363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSCGH 419 (434)
Q Consensus 363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~~~ 419 (434)
....+.-|...|.++.|.+. |+++++.|.|..+..|...-|..+...
T Consensus 625 -~kyqlhlheScVLSlKFa~c---------GkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 625 -EKYQLHLHESCVLSLKFAYC---------GKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred -cceeecccccEEEEEEeccc---------CceeeecCchhhhhhccCccccceeec
Confidence 44566679999999999999 999999999999999999988766543
No 146
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.7e-23 Score=172.95 Aligned_cols=241 Identities=17% Similarity=0.253 Sum_probs=181.4
Q ss_pred EeeccccEEEEEE----cCCEEEEEeCCCeEEEecCCC----------------ceeEeeccCCCccEEEEEEeCC---E
Q 046226 88 VLKKDGQILCIAV----GNGFIYTGSDSNVIRIWKQPE----------------FTECGRLKAKTSMVVAMEVSHD---R 144 (434)
Q Consensus 88 ~~~h~~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~l~~~~~---~ 144 (434)
..+|.+.|.-+.. +..+.++=+..|.|.||++.. .+++.++.+|...=+.|+|+|- .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 3456666665555 556777778899999999732 4567788899999999999994 6
Q ss_pred EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEc
Q 046226 145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRI 223 (434)
Q Consensus 145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~ 223 (434)
|++|..-+.|++|...++.... ....+.+|...|..++|+|. ...|++|+.||+|+|||+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~v-------------------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKV-------------------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred cccCccccceEeeeeccCceee-------------------cCccccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 8888888999999876643211 11223479999999999996 568899999999999999
Q ss_pred CCC---eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEE
Q 046226 224 RDS---KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLL 298 (434)
Q Consensus 224 ~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 298 (434)
+.+ .++.+ +.|.+.|+.|.|+..- +|++|+.||+++|||++..+ ...++..+..|..+|+++.|+|. ...|
T Consensus 288 Rs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~---~~~pVA~fk~Hk~pItsieW~p~e~s~i 363 (440)
T KOG0302|consen 288 RSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK---SGQPVATFKYHKAPITSIEWHPHEDSVI 363 (440)
T ss_pred cCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc---CCCcceeEEeccCCeeEEEeccccCceE
Confidence 987 34444 7899999999999777 89999999999999999433 33677888899999999999994 5678
Q ss_pred EEEcCCCeEEEEEcCccccccc-------cc-----CcccCc--ccceEEEEee---CCEEEEecCCCcE
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQ-------YG-----GALQGH--THAVMCLASV---ANYVISGSADSTS 351 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~-------~~-----~~~~~~--~~~v~~~~~~---~~~l~s~~~dg~i 351 (434)
++++.|..|.|||+......-+ .. +.+--| ...+..+.|+ +.++++.+.||.-
T Consensus 364 aasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 364 AASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred EeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 8899999999999864332100 00 011122 2345566675 4588888888843
No 147
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=174.89 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=170.2
Q ss_pred CcCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCC----------------CeeEEEcccCccCeEEEEEcCC--CeEE
Q 046226 192 KHMGPITSIAINVSD--DTLYSASLDKTIKVWRIRD----------------SKCIETIQAHSEPINALVVADD--GVLY 251 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~--~~l~ 251 (434)
.|.+.++-+...+-+ .+.++-+..|.|.|||+.. .+++.++.+|...=+.|+|+|- |.|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577777777776654 4555667889999999853 3467888899999999999994 4899
Q ss_pred EEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH 330 (434)
Q Consensus 252 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 330 (434)
+|.--+.|++|.... ..-..-...+.+|...|..++|+|. ...|++|+.||.|+|||++........ ..+.|..
T Consensus 229 sGDc~~~I~lw~~~~---g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~--~~kAh~s 303 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPST---GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV--STKAHNS 303 (440)
T ss_pred cCccccceEeeeecc---CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee--EeeccCC
Confidence 999899999998762 2222223455679999999999995 568899999999999999866433332 2368999
Q ss_pred ceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 331 AVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 331 ~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
-|..++|+.+ +|++|++||+++|||++.-...+++..++-|..+|+++.|+|.. ...|+++|.|..|.||
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e--------~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE--------DSVIAASGEDNQITIW 375 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc--------CceEEeccCCCcEEEE
Confidence 9999999855 89999999999999999876668999999999999999999985 6789999999999999
Q ss_pred ecCCCC
Q 046226 409 RVTRPK 414 (434)
Q Consensus 409 ~~~~~~ 414 (434)
|+.-.+
T Consensus 376 DlsvE~ 381 (440)
T KOG0302|consen 376 DLSVEA 381 (440)
T ss_pred EeeccC
Confidence 997554
No 148
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=168.83 Aligned_cols=290 Identities=12% Similarity=0.133 Sum_probs=206.5
Q ss_pred eeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeecc-CCCccEEEEEEeC-CEEEEEEcCCeEEEeecC
Q 046226 84 CISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSH-DRVYAAYGDGKIRVWRST 160 (434)
Q Consensus 84 ~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~-~~l~~~s~dg~i~vwd~~ 160 (434)
....+.+|.+.|+|+.| .+.+|.+|..-|.|++|++.+......+. .+...|+.+..-| +.+.+-+.|+.+.+|++.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 34556789999999999 67789999999999999999988888888 6788999999988 489999999999999987
Q ss_pred CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-----C----CEEEEEecCC-cEEEEEcCCCeeEE
Q 046226 161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-----D----DTLYSASLDK-TIKVWRIRDSKCIE 230 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~l~s~~~dg-~i~vwd~~~~~~~~ 230 (434)
...-+.. |.-.++++-|.+. + ..++.-++.. .+.+-|......+.
T Consensus 86 ~s~~i~i-------------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 86 YSAFISI-------------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred CcceEEE-------------------------eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 5332221 2222333333221 1 1111111110 12222322222222
Q ss_pred Ecc----cCccCeEEEEEcCC-C---eEEEEeCCCeEEEEeccccc----CcceeEEEEEecccccCeEEEEEecCCCEE
Q 046226 231 TIQ----AHSEPINALVVADD-G---VLYSASDDATVRVWRRYFYS----ENQLHTLILTLTAKYSPVKTLTLTLDDGLL 298 (434)
Q Consensus 231 ~~~----~~~~~v~~~~~~~~-~---~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 298 (434)
... ...+.+.|..+.-+ + ++++|.++|.+.+||+.... -.+..+.......|..+|.++.+.+.-..=
T Consensus 141 i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 141 IADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred ccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC
Confidence 221 23456777765432 2 78888899999999998321 112223445566788999999999877777
Q ss_pred EEEcCCCeEEEEEcCcccccccccCcccCcccce--EEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccccee
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV--MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIR 376 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 376 (434)
++|+.+..+..|++..............-....| ..+..+++.+++++.|+.||||+.++. .++..++-|.+.|.
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVN 297 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---Cchhhhhhhhccee
Confidence 8889999999999876544444333322222223 456678999999999999999999998 88999999999999
Q ss_pred EEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226 377 CAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
+++|+|+ ..++|++|.|++|.+|++
T Consensus 298 ~vAfspd---------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPD---------CELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCC---------CchhhhccCCceEEeeec
Confidence 9999999 789999999999999996
No 149
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=8.9e-23 Score=164.63 Aligned_cols=234 Identities=17% Similarity=0.218 Sum_probs=180.7
Q ss_pred cCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-
Q 046226 129 KAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV- 204 (434)
Q Consensus 129 ~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 204 (434)
..|.+.|+++...+. ++++|+.||.|.+||++.........+..... -........+|.-.|.++.|-|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~-------c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHK-------CIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehee-------eeccccCCccceeeeeeeEEeee
Confidence 458899999999874 89999999999999997654221111100000 0012223346889999999998
Q ss_pred CCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC----eEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226 205 SDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG----VLYSASDDATVRVWRRYFYSENQLHTLILTLT 280 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 280 (434)
|..+|.+++.|.+++|||.++.+....|+ -.+.|.+-+++|-. ++++|..|-.|++.|+. .......+.
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------SGs~sH~Ls 185 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------SGSFSHTLS 185 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc------CCcceeeec
Confidence 56788899999999999999998888776 56778888888754 78888899999999997 556677889
Q ss_pred ccccCeEEEEEecCCCE-EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226 281 AKYSPVKTLTLTLDDGL-LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 281 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 359 (434)
+|...|.++.|+|...+ |++|+.||.|++||++.. .|..++.|..++
T Consensus 186 GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra--------------------------------sgcf~~lD~hn~ 233 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA--------------------------------SGCFRVLDQHNT 233 (397)
T ss_pred cccCceEEEEeccCceeEEEecCCCceEEEEEeecc--------------------------------cceeEEeecccC
Confidence 99999999999997665 778999999999998521 123344444444
Q ss_pred CceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 360 GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 360 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
.....+..-..|.+.|..++|..+ +.++++++.|..+++|+..+|+...
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd---------~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSD---------ARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ccCccccccccccceeeeeeeccc---------chhhhhccCccceEEeecccCcccc
Confidence 343555566789999999999998 9999999999999999999987643
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=178.86 Aligned_cols=242 Identities=19% Similarity=0.209 Sum_probs=190.4
Q ss_pred cCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226 129 KAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205 (434)
Q Consensus 129 ~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 205 (434)
..|...-+.|+|.++ .|++++.||.|++|+.... +....+. -+...|.+++. .
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~----------------------~~g~~v~~ia~--~ 65 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID----------------------ISGELVSSIAC--Y 65 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh----------------------ccCceeEEEee--c
Confidence 368888899999987 8999999999999987654 2222221 16667777775 4
Q ss_pred CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS 284 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 284 (434)
+.+|++|+.+++|.+|.+..++.-..+....-++++++++.+| +++.|+.|-.|++.++. .......+.+|.+
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~------D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD------DSSQEKVLRGHDA 139 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc------ccchheeecccCC
Confidence 6699999999999999998887655555556789999999999 99999999999999877 4445667889999
Q ss_pred CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc----ccceEEEEee--CCEEEEecCCCcEEEEeccC
Q 046226 285 PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH----THAVMCLASV--ANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 285 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 358 (434)
+|.++.|+|.+++|++.+.||.|++||+........+....+.. ...+..++|+ +..++..+.|+.|++|+..+
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence 99999999999999999999999999998665443332222211 2334556776 45888888899999999988
Q ss_pred CCceeeEEEe--eccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 359 DGRHTMLAVL--VGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 359 ~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
. .....+ ..|...+.++.|+|+ |.|||+++.||.|.|||+++
T Consensus 220 w---e~~f~Lr~~~~ss~~~~~~wsPn---------G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 220 W---ELQFKLRDKLSSSKFSDLQWSPN---------GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred c---eeheeecccccccceEEEEEcCC---------CcEEeeeccCCcEEEEeccc
Confidence 6 333333 234445899999999 99999999999999999994
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.3e-20 Score=166.14 Aligned_cols=264 Identities=11% Similarity=0.055 Sum_probs=177.7
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEE-EcCCeEE
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAA-YGDGKIR 155 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~-s~dg~i~ 155 (434)
.+++..+..|.. +.+++| +++.+ ++++.++.|++||..+++....+..+.. +..++|+|+ .++++ ..|+.|+
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEE
Confidence 345566665544 677888 67765 6677899999999999888777765544 567889887 45544 4589999
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-cEEEEEcCCCeeEEEccc
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-TIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~ 234 (434)
+||+.+...+..+ .+...+.+++|+|++.+++++..++ .+.+||..+++.+..+..
T Consensus 99 ~~d~~~~~~~~~~-----------------------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 99 VIDIETRKVLAEI-----------------------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred EEECCCCeEEeEe-----------------------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 9999765433332 1233467899999999999988765 567789988877665442
Q ss_pred CccCeEEEEEcCCC-eEE-EEeCCCeEEEEecccccCcceeEEEEEecc---cccCeEEEEEecCCCEEEEE-cCCCeEE
Q 046226 235 HSEPINALVVADDG-VLY-SASDDATVRVWRRYFYSENQLHTLILTLTA---KYSPVKTLTLTLDDGLLYGG-CTDGYIH 308 (434)
Q Consensus 235 ~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 308 (434)
.....++.|++++ .++ ++..++.|++||+... ............ .......++|+|++++++++ ..++.|.
T Consensus 156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~ 232 (300)
T TIGR03866 156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR--KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA 232 (300)
T ss_pred -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc--eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence 3345789999999 554 4556999999998721 111111111000 11123568899999986554 4567899
Q ss_pred EEEcCcccccccccCcccCcccceEEEEee--CCEEEEe-cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 309 YWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISG-SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
+||++..+.... . .+...+.+++|+ +++|+++ +.+|.|++||++++ +.+..++.. ...+.++++|
T Consensus 233 v~d~~~~~~~~~----~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 233 VVDAKTYEVLDY----L-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL---KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCcEEEE----E-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEEcc-cccceeEeCC
Confidence 999864432211 1 122356677774 6687775 56899999999987 666666554 4457787764
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.2e-21 Score=160.45 Aligned_cols=260 Identities=15% Similarity=0.283 Sum_probs=198.8
Q ss_pred cCCCccEEEEEEeC----C--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE
Q 046226 129 KAKTSMVVAMEVSH----D--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI 202 (434)
Q Consensus 129 ~~~~~~v~~l~~~~----~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 202 (434)
..|..+|..++|++ + .+++......+.+|.......+..+.....+ .|......++|
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~-----------------d~~Esfytcsw 97 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADE-----------------DHDESFYTCSW 97 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCC-----------------CCCcceEEEEE
Confidence 46788999999985 1 5565566778899987655544444322111 36677777888
Q ss_pred ecC----CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226 203 NVS----DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI 276 (434)
Q Consensus 203 ~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 276 (434)
+-+ ..++++|+.-|.|+|.|+.++++...+.+|...|+.|.+.|+. ++++++.|..||+|+++ ........
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~---~~~Cv~Vf 174 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ---TDVCVAVF 174 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc---CCeEEEEe
Confidence 754 4578899999999999999999999999999999999999998 99999999999999998 33333444
Q ss_pred EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc--ccccc----------------------CcccCcccce
Q 046226 277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA--QLQYG----------------------GALQGHTHAV 332 (434)
Q Consensus 277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~----------------------~~~~~~~~~v 332 (434)
....+|...|.++.|+++|.++++++.|..|++|++...+. ..+.. .+..-|...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 55678999999999999999999999999999999873211 11110 1233577788
Q ss_pred EEEEeeCCEEEEecCCCcEEEEeccC-C----------CceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226 333 MCLASVANYVISGSADSTSRVWAREQ-D----------GRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL 401 (434)
Q Consensus 333 ~~~~~~~~~l~s~~~dg~i~iwd~~~-~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 401 (434)
-|+.|-|+++++-+-++.|..|.... + .....+.++.-....|+-+.|.-|.+ +++||.|..
T Consensus 255 DCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~-------~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW-------QKMLALGNQ 327 (385)
T ss_pred HHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH-------HHHHhhccC
Confidence 88888899999999999999998621 1 11234455555566777777775533 789999999
Q ss_pred CCeEEEEecCCCCc
Q 046226 402 DGVLKMWRVTRPKS 415 (434)
Q Consensus 402 Dg~v~iw~~~~~~~ 415 (434)
.|.|.+||++...+
T Consensus 328 ~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEP 341 (385)
T ss_pred CCcEEEEECCCCCC
Confidence 99999999998766
No 153
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=158.61 Aligned_cols=267 Identities=16% Similarity=0.176 Sum_probs=196.8
Q ss_pred EEEEEE--cCCEEEEEeCCCeEEEecCCCce------------eEeecc-CCCccEEEEEEeC-------C--EEEEEEc
Q 046226 95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFT------------ECGRLK-AKTSMVVAMEVSH-------D--RVYAAYG 150 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~------------~~~~~~-~~~~~v~~l~~~~-------~--~l~~~s~ 150 (434)
...+.| ||..|++-+.|..+++|++...- ....++ .....|...+|-+ + ++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345677 99999999999999999975310 111111 1244677777752 2 6777788
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC---CeEEEEEecCCCEEEEEecCCcEEEEEc-CCC
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG---PITSIAINVSDDTLYSASLDKTIKVWRI-RDS 226 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~ 226 (434)
+.-|++||.-+++....+... .|.. ...+++|+|||.+|++|. ..+|+++|+ +.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~y--------------------dh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpG 190 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY--------------------DHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPG 190 (406)
T ss_pred cCceeeeeccccccccchhhh--------------------hhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCC
Confidence 999999999887665554321 2433 456899999999999887 678999999 555
Q ss_pred eeE--EEc-----ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226 227 KCI--ETI-----QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL 297 (434)
Q Consensus 227 ~~~--~~~-----~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 297 (434)
... ... .+..+-|.|++++|-. .++.++....+-||.-. ...+...+.+|.+.|+.++|.++|+.
T Consensus 191 r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~------~~~pl~llggh~gGvThL~~~edGn~ 264 (406)
T KOG2919|consen 191 RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD------GRRPLQLLGGHGGGVTHLQWCEDGNK 264 (406)
T ss_pred CCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC------CCCceeeecccCCCeeeEEeccCcCe
Confidence 421 111 1246788999999977 88999988888887543 44566677799999999999999999
Q ss_pred EEEEcC-CCeEEEEEcCcccccccccCcccCccc----ce-EEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226 298 LYGGCT-DGYIHYWHKGWFSAQLQYGGALQGHTH----AV-MCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH 371 (434)
Q Consensus 298 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~----~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 371 (434)
|++|.. |-.|..||++....... .+..|.. .| ..++..+++|++|+.||.|++||++..+ ..+..+..|
T Consensus 265 lfsGaRk~dkIl~WDiR~~~~pv~---~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~ 339 (406)
T KOG2919|consen 265 LFSGARKDDKILCWDIRYSRDPVY---ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNY 339 (406)
T ss_pred ecccccCCCeEEEEeehhccchhh---hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccccccccc
Confidence 999876 77999999985544332 3333332 22 4455568999999999999999999843 466778889
Q ss_pred ccceeEEEEeecccCCCCCCcccEEEEeecC
Q 046226 372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLD 402 (434)
Q Consensus 372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D 402 (434)
...++.++++|- -.++++++..
T Consensus 340 sd~vNgvslnP~---------mpilatssGq 361 (406)
T KOG2919|consen 340 SDTVNGVSLNPI---------MPILATSSGQ 361 (406)
T ss_pred cccccceecCcc---------cceeeeccCc
Confidence 999999999998 6778887754
No 154
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=6.5e-22 Score=170.45 Aligned_cols=256 Identities=14% Similarity=0.158 Sum_probs=190.9
Q ss_pred cEEEEEE-cCCEEEEE--eCCCeEEEecCCCc--eeEeeccCCCccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCce
Q 046226 94 QILCIAV-GNGFIYTG--SDSNVIRIWKQPEF--TECGRLKAKTSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVK 166 (434)
Q Consensus 94 ~v~~~~~-~~~~l~tg--~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~ 166 (434)
.+..++| ..+.|+++ +.|..|++|.-... +....-+.....-.|++... -++++|+..+.|+|||++.....+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 3888899 44546655 45779999963221 11111111112233443332 388899999999999998444333
Q ss_pred eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEc
Q 046226 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVA 245 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~ 245 (434)
.+ .+|...|+++.++....+|++++..|.|.|..+.++.....|... ...|.-+.++
T Consensus 116 ~l----------------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys 173 (673)
T KOG4378|consen 116 FL----------------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYS 173 (673)
T ss_pred hc----------------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecc
Confidence 33 279999999999999999999999999999999998877777654 3456688999
Q ss_pred CCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCccccccccc
Q 046226 246 DDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYG 322 (434)
Q Consensus 246 ~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 322 (434)
+.. +|.+++.+|.|.+||+. ...........|..+...|+|+|. ..+|++.+.|..|.+||.+.......+
T Consensus 174 ~skr~lL~~asd~G~VtlwDv~-----g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l- 247 (673)
T KOG4378|consen 174 PSKRFLLSIASDKGAVTLWDVQ-----GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL- 247 (673)
T ss_pred cccceeeEeeccCCeEEEEecc-----CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee-
Confidence 877 88899999999999987 233344455678899999999995 567788899999999998744332222
Q ss_pred CcccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 323 GALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 323 ~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
.-..+...++| +|.+|++|...|.|..||++..+ .++..+..|...|++++|-|.
T Consensus 248 ----~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 248 ----TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ----eecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeec
Confidence 22235556666 57799999999999999999754 688888999999999999886
No 155
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=162.98 Aligned_cols=298 Identities=14% Similarity=0.164 Sum_probs=215.2
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC------ceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCe
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE------FTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGK 153 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~------~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~ 153 (434)
.+-+.+|.+.|.++.| ++++|++|+.|..+++|+++. .+++.... .|...|.|++|... .+++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3447889999999999 899999999999999999854 24444333 35689999999875 8999999999
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eE--E
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CI--E 230 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~--~ 230 (434)
|...|+++.+.+..+.- ....+.|..+..+|..+.|++.+.++.|.+||.+..+ .+ .
T Consensus 129 VI~HDiEt~qsi~V~~~--------------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANE--------------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred eEeeecccceeeeeecc--------------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee
Confidence 99999988776655521 0234589999999999999999999999999997654 11 1
Q ss_pred EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeE-EEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226 231 TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHT-LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI 307 (434)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 307 (434)
.+.........+.|+|.. +|++.+..+-+-+||++......... ....+......-.++.|+|+|+.|++--....-
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 222244567888999987 88899999999999998332211111 011111112233577899999999888777777
Q ss_pred EEEEcCccccc-ccccCcccC--cccceEEEEeeCC-EEEEecCCCcEEEEeccCCC--------------------cee
Q 046226 308 HYWHKGWFSAQ-LQYGGALQG--HTHAVMCLASVAN-YVISGSADSTSRVWAREQDG--------------------RHT 363 (434)
Q Consensus 308 ~i~d~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~--------------------~~~ 363 (434)
.+||+-..... ++......+ ....+.++.|-++ -+++|+.+-.|++|.+.... ...
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 77887542221 111101001 1234566677655 58999999999999875321 113
Q ss_pred eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
.+..+++|..-+..+.|+|. ..+|++.|....++||.-.
T Consensus 349 ~~~VLrGHRSv~NQVRF~~H---------~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGHRSVPNQVRFSQH---------NNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecccccccceeecCC---------cceEeccchhhheeccccc
Confidence 46778999999999999998 7899999999999999744
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.8e-21 Score=164.34 Aligned_cols=282 Identities=13% Similarity=0.171 Sum_probs=219.7
Q ss_pred ccccCCCCCCCCCCCCCccCCCCCCCcccceee-------eEEEeeccccEEEEEE--cCC-EEEEEeCCCeEEEecCCC
Q 046226 52 SLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRC-------ISSVLKKDGQILCIAV--GNG-FIYTGSDSNVIRIWKQPE 121 (434)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~--~~~-~l~tg~~dg~i~iwd~~~ 121 (434)
......+.+..|.+....+.+++.+++++.|+. ++.+.--..+|.+.+| +|. .+++++....++.||+.+
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 344567788888889999999999999888776 5556556789999999 677 899999999999999988
Q ss_pred ceeEe--eccCCC-ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226 122 FTECG--RLKAKT-SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP 196 (434)
Q Consensus 122 ~~~~~--~~~~~~-~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (434)
.+... ...++. ..+.....+++ .|+.++..|.|.+....+++.+..++ ..+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-----------------------ieG~ 346 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-----------------------IEGV 346 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-----------------------eccE
Confidence 66433 334443 34566667775 89999999999999988888777774 6778
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226 197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT 274 (434)
Q Consensus 197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 274 (434)
|..++|+.+++.|++.+.+|.|.+||++...+++++....+ .-+.++.+.++ +|++|+..|.|.|||....-.....+
T Consensus 347 v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence 99999999999999999999999999999999998874322 23567777888 99999999999999977544455566
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCc
Q 046226 275 LILTLTAKYSPVKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADST 350 (434)
Q Consensus 275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~ 350 (434)
++..+......|+++.|+++.++|+.++. +..+++-.+.....-..+ ......-+.|+|++|+ +.+||.|..+|.
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf-P~~n~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF-PTSNTKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC-CCCCCcccceEEEEecCCCceEEeecCCCc
Confidence 66666667778999999999999988876 567777765432211111 1112334568999997 459999999999
Q ss_pred EEEEecc
Q 046226 351 SRVWARE 357 (434)
Q Consensus 351 i~iwd~~ 357 (434)
+.+|.+.
T Consensus 506 v~l~kL~ 512 (514)
T KOG2055|consen 506 VHLFKLH 512 (514)
T ss_pred eeeEeec
Confidence 9999875
No 157
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.3e-20 Score=145.93 Aligned_cols=278 Identities=14% Similarity=0.171 Sum_probs=188.1
Q ss_pred cCCEEEEEeCCCeEEEecCCC----------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceee-E
Q 046226 101 GNGFIYTGSDSNVIRIWKQPE----------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV-K 169 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~-~ 169 (434)
.+++|++|..+|.|.+..+.+ ...+...++|.++|+.++|..+.|++|+ ||.|+-|..+........ +
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWNEEEESLATKR 99 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeehhhhhhccchh
Confidence 688999999999999998753 2334556899999999999977776665 599999987644331111 0
Q ss_pred eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEc-CCC
Q 046226 170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA-DDG 248 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~ 248 (434)
+.. ...+...-.-.-..|+++...|..+-++.++.|+.++-||+++|+..+++++|.+.|.++.-. ..+
T Consensus 100 lwe----------~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWE----------VKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhh----------hcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 000 000000000123468999999887777777789999999999999999999999999999984 445
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEE---Eeccc-ccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLIL---TLTAK-YSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA 324 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 324 (434)
.+++|++||++|+||.+............ .++.+ ...|.+++. +..+|++|+ ...+.+|.++..+....+ .
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vf--p 244 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVF--P 244 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEE--e
Confidence 99999999999999998322211111100 11111 123455554 457888775 457999999866554433 3
Q ss_pred ccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226 325 LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV 404 (434)
Q Consensus 325 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 404 (434)
++ ..+..+.|..+.+++++..+.|.-|.+.. ..-...+......++..++... -++|-.++....
T Consensus 245 ip---a~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p--------~k~~s~ag~s~~ 309 (325)
T KOG0649|consen 245 IP---ARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSP--------IKFISIAGFSNK 309 (325)
T ss_pred cc---cceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCc--------eEEEEeccccee
Confidence 33 35677889999999999999999998864 3333334434445555554331 356667777777
Q ss_pred EEEEe
Q 046226 405 LKMWR 409 (434)
Q Consensus 405 v~iw~ 409 (434)
+.|+.
T Consensus 310 ~~i~~ 314 (325)
T KOG0649|consen 310 LHILK 314 (325)
T ss_pred eeeee
Confidence 77764
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=2.9e-21 Score=155.50 Aligned_cols=248 Identities=19% Similarity=0.254 Sum_probs=188.2
Q ss_pred EEeeccccEEEEEE---cCCEEEEEeCC-------CeEEEecCCC---------ceeEeecc-CCCccEEEEEEeCC--E
Q 046226 87 SVLKKDGQILCIAV---GNGFIYTGSDS-------NVIRIWKQPE---------FTECGRLK-AKTSMVVAMEVSHD--R 144 (434)
Q Consensus 87 ~~~~h~~~v~~~~~---~~~~l~tg~~d-------g~i~iwd~~~---------~~~~~~~~-~~~~~v~~l~~~~~--~ 144 (434)
.|..|.+.|+.++- +.++|+|+..+ -.+.||.++. .+++..+. .+-+.|.|+.|.|+ .
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 36678899999887 78888887653 2567998764 23333443 35568999999998 4
Q ss_pred EEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--CCCEEEEEecCCcEEEE
Q 046226 145 VYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--SDDTLYSASLDKTIKVW 221 (434)
Q Consensus 145 l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vw 221 (434)
+++. .|..|.+|++.....+ ..+.... ..++....++-+|+| +++.+++.+ |+++..|
T Consensus 138 lasm-~dn~i~l~~l~ess~~vaev~ss~-----------------s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~ 198 (370)
T KOG1007|consen 138 LASM-DDNNIVLWSLDESSKIVAEVLSSE-----------------SAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFW 198 (370)
T ss_pred eEEe-ccCceEEEEcccCcchheeecccc-----------------cccccceecccccCCCCccceEEEeC-CCcEEEE
Confidence 4443 4899999999876653 2221110 013666778889988 678887776 8999999
Q ss_pred EcCCCeeEEEcc-cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCE
Q 046226 222 RIRDSKCIETIQ-AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGL 297 (434)
Q Consensus 222 d~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 297 (434)
|+++.++...+. .|...|..+.|+|+. .|++|+.||.|++||.+ ....++..+.+|...|.++.|+| ..++
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R-----~tk~pv~el~~HsHWvW~VRfn~~hdqL 273 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR-----KTKFPVQELPGHSHWVWAVRFNPEHDQL 273 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc-----CCCccccccCCCceEEEEEEecCccceE
Confidence 999987766664 588899999999998 89999999999999998 55667888999999999999999 4678
Q ss_pred EEEEcCCCeEEEEEcCcccccc-------------------------cccCcccCcccceEEEEeeCC---EEEEecCCC
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQL-------------------------QYGGALQGHTHAVMCLASVAN---YVISGSADS 349 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~-------------------------~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg 349 (434)
+++|+.|..|.+|......... ....++..|...|.+++|+.. .|++-+.||
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred EEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 8999999999999754322100 112356689999999999743 899999999
Q ss_pred cEEEEeccC
Q 046226 350 TSRVWAREQ 358 (434)
Q Consensus 350 ~i~iwd~~~ 358 (434)
.+.|=.+..
T Consensus 354 RviIs~V~r 362 (370)
T KOG1007|consen 354 RVIISSVPR 362 (370)
T ss_pred eEEeecCCh
Confidence 998876653
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.3e-21 Score=166.13 Aligned_cols=266 Identities=13% Similarity=0.134 Sum_probs=192.7
Q ss_pred EeCCCeEEEecCCCceeEeeccCC--CccEEEEEEeCC-EEEEEE--cCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226 108 GSDSNVIRIWKQPEFTECGRLKAK--TSMVVAMEVSHD-RVYAAY--GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN 182 (434)
Q Consensus 108 g~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~-~l~~~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
++....+++||....+....+..| ...+.++.|... .|++++ .|..|++|.-... ...+.....
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k--------- 76 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRK--------- 76 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC--CCccceeec---------
Confidence 334457999999876655554433 234889999876 466654 4888999964322 111111000
Q ss_pred EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226 183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRV 261 (434)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~i 261 (434)
.....-.|++......++++|+..++|+|||++...+.+.++.|...|+++.++... +|++++..|.|.|
T Consensus 77 ---------~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 77 ---------LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII 147 (673)
T ss_pred ---------cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence 112234455555556899999999999999999878888899999999999998766 9999999999999
Q ss_pred EecccccCcceeEEEEEeccc-ccCeEEEEEecCCCE-EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-
Q 046226 262 WRRYFYSENQLHTLILTLTAK-YSPVKTLTLTLDDGL-LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV- 338 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~- 338 (434)
..+.. ......+... ...++-+.|++..++ |.+++.+|.|.+||+........ -...|..+...+.|+
T Consensus 148 h~~~t------~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~---~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 148 HGTKT------KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH---ASEAHSAPCRGICFSP 218 (673)
T ss_pred Eeccc------CccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc---hhhhccCCcCcceecC
Confidence 98762 1122222222 345678999997664 56788999999999975554443 345788887777775
Q ss_pred --CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 339 --ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 339 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
+.+|++.+.|..|.+||+.... ....+ .-..+...++|+++ |.+|+.|...|.|..||++..+.
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~---s~~~l-~y~~Plstvaf~~~---------G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQA---STDRL-TYSHPLSTVAFSEC---------GTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred CccceEEEecccceEEEeeccccc---cccee-eecCCcceeeecCC---------ceEEEeecCCceEEEEecccCCC
Confidence 4489999999999999999753 22222 23667899999999 99999999999999999997654
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=1.8e-20 Score=157.79 Aligned_cols=302 Identities=14% Similarity=0.119 Sum_probs=202.5
Q ss_pred cccEEEEEE---cCCEEEEEeCCCeEEEecCCCc---------eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEe
Q 046226 92 DGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF---------TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVW 157 (434)
Q Consensus 92 ~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vw 157 (434)
..+|..+.| ..+.|+||+.|..|+||.+... +....+..|...|+++.|+|+ .|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 457999999 3448999999999999976432 234557789999999999997 89999999999999
Q ss_pred ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc
Q 046226 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE 237 (434)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 237 (434)
....-... ............. .....+.+|...|..++|+|++.++++++.|+.+++||+..|+.+..+..|..
T Consensus 93 k~~~~~~~-~~d~e~~~~ke~w-----~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~ 166 (434)
T KOG1009|consen 93 KQGDVRIF-DADTEADLNKEKW-----VVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH 166 (434)
T ss_pred EecCcCCc-cccchhhhCccce-----EEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc
Confidence 76531110 0000000001111 11123347999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE--EEEEecc-----------c----ccCeEEEEEecCCCEEE
Q 046226 238 PINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT--LILTLTA-----------K----YSPVKTLTLTLDDGLLY 299 (434)
Q Consensus 238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~-----------~----~~~v~~~~~~~~~~~l~ 299 (434)
.+..++|.|-+ ++++-+.|...+.+++.......... ....... | ..-...++|+|+|.+|+
T Consensus 167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llv 246 (434)
T KOG1009|consen 167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLV 246 (434)
T ss_pred ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEE
Confidence 99999999988 88888888877777654211111111 0000000 1 11234678999999998
Q ss_pred EEcC----CCe-----EEEEEcCcccccccccCcccCcccceEEEEee--------------------CCEEEEecCCCc
Q 046226 300 GGCT----DGY-----IHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--------------------ANYVISGSADST 350 (434)
Q Consensus 300 ~~~~----dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------~~~l~s~~~dg~ 350 (434)
+... ++. .++|+-. ........+.....+...+.++ ...++.++ ...
T Consensus 247 tPag~~~~g~~~~~n~tYvfsrk---~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~s 322 (434)
T KOG1009|consen 247 TPAGLFKVGGGVFRNTSYVFSRK---DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNS 322 (434)
T ss_pred cccceeeeCCceeeceeEeeccc---cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cce
Confidence 8643 232 3444421 1111222233333333333321 12345554 558
Q ss_pred EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 351 SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
|+|||.++......+ -.-|-..|+.++|+++ |.+|+..|.||...+-.++..+
T Consensus 323 vyvydtq~~~P~~~v--~nihy~~iTDiaws~d---------g~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVV--DNIHYSAITDIAWSDD---------GSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEeccccccceEEE--eeeeeeeecceeecCC---------CcEEEEeccCCceEEEEEcchh
Confidence 999999886332333 2348889999999999 9999999999998887776543
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.3e-22 Score=187.41 Aligned_cols=266 Identities=18% Similarity=0.252 Sum_probs=198.1
Q ss_pred eCCCeEEEecCC--Cc----eeEeeccCCCccEEEEEEeCC------EEEEEEcCCeEEEeecCCC---CCceeeEeeec
Q 046226 109 SDSNVIRIWKQP--EF----TECGRLKAKTSMVVAMEVSHD------RVYAAYGDGKIRVWRSTWD---NGVKHVKLATI 173 (434)
Q Consensus 109 ~~dg~i~iwd~~--~~----~~~~~~~~~~~~v~~l~~~~~------~l~~~s~dg~i~vwd~~~~---~~~~~~~~~~~ 173 (434)
+.+.++-||.+. +. +.+..+. -....+.++|.+. .|+.|..||.|.+||...- .....+
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~l----- 109 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVL----- 109 (1049)
T ss_pred ccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHH-----
Confidence 345566666443 22 2333333 2446788999763 3666777999999997642 111111
Q ss_pred cCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcc--cCccCeEEEEEcCCC--
Q 046226 174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG-- 248 (434)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-- 248 (434)
. ....|.+.|..+.|++... +|++|+.||.|.|||+...+.-.... ...+.|.+++|+..-
T Consensus 110 -------a-------~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 110 -------A-------TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred -------h-------hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhH
Confidence 0 1236999999999999755 99999999999999998755433332 245689999999765
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEeccc--ccCeEEEEEecCC-CEEEEEcCCC---eEEEEEcCccccccccc
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK--YSPVKTLTLTLDD-GLLYGGCTDG---YIHYWHKGWFSAQLQYG 322 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~ 322 (434)
.|++++.+|.+.|||++ ..+.+..+..+ ...+..++|+|+. ..|++++.|. .|.+||+|......+
T Consensus 176 ILAS~s~sg~~~iWDlr------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k-- 247 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLR------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK-- 247 (1049)
T ss_pred HhhccCCCCCceecccc------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh--
Confidence 89999999999999998 22223333322 2468899999975 4566666543 799999976554443
Q ss_pred CcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226 323 GALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG 399 (434)
Q Consensus 323 ~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 399 (434)
.+.+|...|.+++|+ ..+|++++.|+.|.+|+.+++ +.+..+.....++..+.|+|.. ...|+.+
T Consensus 248 -~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fdv~w~pr~--------P~~~A~a 315 (1049)
T KOG0307|consen 248 -ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFDVQWCPRN--------PSVMAAA 315 (1049)
T ss_pred -hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceeeeeecCCC--------cchhhhh
Confidence 567999999999996 459999999999999999998 8889998888999999999984 5689999
Q ss_pred ecCCeEEEEecCCCC
Q 046226 400 SLDGVLKMWRVTRPK 414 (434)
Q Consensus 400 ~~Dg~v~iw~~~~~~ 414 (434)
+.||.|-|+.+....
T Consensus 316 sfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGTD 330 (1049)
T ss_pred eeccceeeeeeecCC
Confidence 999999999998765
No 162
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=9.3e-21 Score=169.11 Aligned_cols=270 Identities=16% Similarity=0.202 Sum_probs=209.2
Q ss_pred cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeE
Q 046226 94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVK 169 (434)
Q Consensus 94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~ 169 (434)
.|..++| ||..|+.+.. ..+.+||..+|..+.++++|.+.|++++|+.| ++++|+.|..|.+|.-.-....+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY-- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY-- 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee--
Confidence 7889999 8887777754 57889999999999999999999999999987 899999999999998543332222
Q ss_pred eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-
Q 046226 170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG- 248 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 248 (434)
.|.+.|.|+.|+|-...|++++- ...-+|..+... +...+ ....+.+.+|..||
T Consensus 91 ----------------------SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGq 145 (1081)
T KOG1538|consen 91 ----------------------SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQ 145 (1081)
T ss_pred ----------------------ccCCeeeEeecCchHHHhhhcch-hhccccChhhhh-HHhhh-hheeEEEeeecCCCc
Confidence 49999999999999999999885 357789875433 22222 34578899999999
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-----CEEEEEcCCCeEEEEEcCcccccccccC
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-----GLLYGGCTDGYIHYWHKGWFSAQLQYGG 323 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 323 (434)
+++.|-.+|+|.+-+-. ......+....+.+.+|.+++|+|.. ..+++.....++.+|.+........
T Consensus 146 ylalG~~nGTIsiRNk~----gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~--- 218 (1081)
T KOG1538|consen 146 YLALGMFNGTISIRNKN----GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD--- 218 (1081)
T ss_pred EEEEeccCceEEeecCC----CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc---
Confidence 99999999999987543 22233344445677899999999953 4788888888888888753221111
Q ss_pred cccCcccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeec
Q 046226 324 ALQGHTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSL 401 (434)
Q Consensus 324 ~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~ 401 (434)
..-.....|+++ +|.+++.|+.|+.+.+|.-+. ..+.++.....+|+.++..|+ +++++.|+.
T Consensus 219 --r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~D~WIWtV~~~PN---------sQ~v~~GCq 283 (1081)
T KOG1538|consen 219 --RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQDSWIWTVQAKPN---------SQYVVVGCQ 283 (1081)
T ss_pred --ccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeeccccceeEEEEEEccC---------CceEEEEEc
Confidence 111122345554 688999999999999997653 677777778889999999999 999999999
Q ss_pred CCeEEEEecCCC
Q 046226 402 DGVLKMWRVTRP 413 (434)
Q Consensus 402 Dg~v~iw~~~~~ 413 (434)
||+|.-|++-..
T Consensus 284 DGTiACyNl~fS 295 (1081)
T KOG1538|consen 284 DGTIACYNLIFS 295 (1081)
T ss_pred cCeeehhhhHHh
Confidence 999999998643
No 163
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.7e-21 Score=155.18 Aligned_cols=211 Identities=16% Similarity=0.203 Sum_probs=153.5
Q ss_pred cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-----EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEE
Q 046226 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-----IETIQAHSEPINALVVADDG--VLYSASDDATVRV 261 (434)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~i 261 (434)
.+.+|.+.|++++|+.||++|++++.|+.|++|+++.... ++. ...-+..+.+.|.||. .++++-....+++
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4458999999999999999999999999999999986421 111 1122356789999998 7777778889999
Q ss_pred EecccccCccee-EE-----EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226 262 WRRYFYSENQLH-TL-----ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL 335 (434)
Q Consensus 262 wd~~~~~~~~~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 335 (434)
|.+......... .. ......|...+..+-....+.+|++++.|..|.+|++.... +..+.+ ......-.++
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~--L~~idt-nq~~n~~aav 236 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL--LQSIDT-NQSSNYDAAV 236 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce--eeeecc-ccccccceee
Confidence 977522221110 00 01122344566667777788999999999999999986221 111111 1112233567
Q ss_pred EeeCCEEEEecCCCcEEEEeccCCC-----ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEec
Q 046226 336 ASVANYVISGSADSTSRVWAREQDG-----RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 336 ~~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
+++|+++++++..-.|++|.+--++ ....+..++||...|..++|+++ ...++|.|.||+++|||+
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~---------S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS---------STRAVTVSKDGKWRIWDT 307 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC---------cceeEEEecCCcEEEeec
Confidence 7889999999999999999864321 22456788999999999999999 889999999999999998
Q ss_pred CC
Q 046226 411 TR 412 (434)
Q Consensus 411 ~~ 412 (434)
+-
T Consensus 308 dV 309 (420)
T KOG2096|consen 308 DV 309 (420)
T ss_pred cc
Confidence 73
No 164
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=9.8e-22 Score=169.06 Aligned_cols=306 Identities=16% Similarity=0.252 Sum_probs=231.1
Q ss_pred ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeec-cCCCccEEEEEEeCC----EEEEEEcC
Q 046226 79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRL-KAKTSMVVAMEVSHD----RVYAAYGD 151 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~----~l~~~s~d 151 (434)
+..++....|..|.|.|..+.| .|..|++|+.|..|.+||...+.....+ .+|...|....|-|. .+++++.|
T Consensus 129 vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 129 VQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred HHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence 4455666778899999999999 8999999999999999999988877665 468888887778774 78999999
Q ss_pred CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEE
Q 046226 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIE 230 (434)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~ 230 (434)
|.+++=.+.....+...+ .+..|.++|.-++.-|+. ..|++++.|+.+.-+|++.+....
T Consensus 209 gqvr~s~i~~t~~~e~t~-------------------rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTK-------------------RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred Cceeeeeeccccceecce-------------------ecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 999988765443332111 122599999999999975 458899999999999998765433
Q ss_pred Ec---ccCcc---CeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEec------ccccCeEEEEEecCCC
Q 046226 231 TI---QAHSE---PINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLT------AKYSPVKTLTLTLDDG 296 (434)
Q Consensus 231 ~~---~~~~~---~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~ 296 (434)
.+ ..+.. ....++..|.. .+++++.|..+++||.+..........+..+. ...-.|++++|+.++.
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 22 22333 56788888877 89999999999999988444432222222221 2234689999998888
Q ss_pred EEEEEcCCCeEEEEEcCcccc--------cccccC-cccCccc--ceEEEEeeC---CEEEEecCCCcEEEEeccCCCce
Q 046226 297 LLYGGCTDGYIHYWHKGWFSA--------QLQYGG-ALQGHTH--AVMCLASVA---NYVISGSADSTSRVWAREQDGRH 362 (434)
Q Consensus 297 ~l~~~~~dg~i~i~d~~~~~~--------~~~~~~-~~~~~~~--~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~ 362 (434)
-|+++..|-.|++|.-..... ...+.. .+++|.. .|.++.|-| +|+++|++-|.|.||+-.++
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~--- 426 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG--- 426 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---
Confidence 888888899999996433222 002222 3678864 467777754 59999999999999999887
Q ss_pred eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
+.++.+.+...-|+|+.-+|- -.+||+.|-|..||||.-...+.
T Consensus 427 eii~~MegDr~VVNCLEpHP~---------~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 427 EIIRFMEGDRHVVNCLEPHPH---------LPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred HHHHHhhcccceEeccCCCCC---------CchhhccCCccceeeecCCcccc
Confidence 777777787778999998887 77999999999999999755443
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.4e-20 Score=172.77 Aligned_cols=287 Identities=19% Similarity=0.279 Sum_probs=198.2
Q ss_pred CCEEEEEeCCCeEEEecCCCceeEeeccCC---CccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAK---TSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP 174 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~ 174 (434)
...++++...-.|+|||.+.++....+..+ ...|+.+.+-.+ .+++|+.||.|+||+--.... ...++
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-~~~eL---- 1150 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-KKPEL---- 1150 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc-CCcee----
Confidence 456778877779999999999988777653 457889988764 899999999999997432211 00000
Q ss_pred CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCC-C-eEE
Q 046226 175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADD-G-VLY 251 (434)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~-~-~l~ 251 (434)
+.....-.+...+..+.=.-+.|.....+|++++.-..|+|||+...+++..+.. ....|+++.-+.. | .++
T Consensus 1151 -----VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1151 -----VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred -----EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 0000000111112222225567877777888877788999999998887777654 3446677655433 3 999
Q ss_pred EEeCCCeEEEEecccccCcceeEEEEEecccccC--eEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSP--VKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 252 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
+|..||.|++||.+... ....+...+.|... |..+.+.++|- .|++|+.||.|++||++........ ....|
T Consensus 1226 AGfaDGsvRvyD~R~a~---~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~--~iv~~ 1300 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAP---PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL--TIVAH 1300 (1387)
T ss_pred EeecCCceEEeecccCC---ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc--eeeec
Confidence 99999999999998332 33456667778776 99999988665 4999999999999999874222111 22233
Q ss_pred c--c-ceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEE----eeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226 329 T--H-AVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAV----LVGHRGPIRCAIAFLGRFGEETEDEYCTICTG 399 (434)
Q Consensus 329 ~--~-~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 399 (434)
. + ..+++..+ ...+|+|+. +.|+||++.... ...+.. +....+.+.|++|+|. .-++|.|
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~---------~~llAaG 1369 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPH---------RLLLAAG 1369 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecch---------hHhhhhc
Confidence 2 3 47788776 458899988 999999997531 111111 1122456799999998 6789999
Q ss_pred ecCCeEEEEecCCCC
Q 046226 400 SLDGVLKMWRVTRPK 414 (434)
Q Consensus 400 ~~Dg~v~iw~~~~~~ 414 (434)
+.|.+|.||...++.
T Consensus 1370 ~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCCceEEEeecCCcC
Confidence 999999999987654
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=7e-20 Score=147.77 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=198.2
Q ss_pred cEEEEEE-----cCCEEEEEeC----CCeEEEecC--CCceeEeec-cCCCccEEEEEEeCCE-----EEEEEcCCeEEE
Q 046226 94 QILCIAV-----GNGFIYTGSD----SNVIRIWKQ--PEFTECGRL-KAKTSMVVAMEVSHDR-----VYAAYGDGKIRV 156 (434)
Q Consensus 94 ~v~~~~~-----~~~~l~tg~~----dg~i~iwd~--~~~~~~~~~-~~~~~~v~~l~~~~~~-----l~~~s~dg~i~v 156 (434)
.+.++.| .+.+||.|+. .+.|.|-.+ .+++.+..- ..|.-+++.+.|.|+. -+.++.+..+++
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRl 125 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRL 125 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEE
Confidence 3666777 3557888864 345555533 344444322 3588899999999872 123444567999
Q ss_pred eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCe---eEEEc
Q 046226 157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSK---CIETI 232 (434)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~---~~~~~ 232 (434)
|.+...+....... .....+-..+..++++..|+. +-+++.+.+-|-+..|||++++. ....+
T Consensus 126 Wri~~ee~~~~~~~-------------~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 126 WRIGDEESRVELQS-------------VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred EeccCcCCceehhh-------------hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 99875322111110 000111125778999999986 56788899999999999999863 35667
Q ss_pred ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCC-CeEE
Q 046226 233 QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTD-GYIH 308 (434)
Q Consensus 233 ~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-g~i~ 308 (434)
-.|...|..++|..++ .+++++.||.+|+||++. ..-..++..-.....+...++|+++ -+++++-..| ..|.
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~---leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS---LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecc---cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 7899999999999876 999999999999999992 2233344444444568889999884 4667765554 5799
Q ss_pred EEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCc---eeeEEEeeccccceeEEEEee
Q 046226 309 YWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGR---HTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~ 382 (434)
|.|++.. ......+++|.+.|.+++|. ..+++++++|..+.+||+..... ..++..+. -.+.|..+.|++
T Consensus 270 iLDiR~P---~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 270 ILDIRVP---CTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred EEEecCC---CcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence 9999744 34455788999999999996 56999999999999999987532 12233333 467899999997
Q ss_pred cccCCCCCCcccEEEEeecCCeEEE
Q 046226 383 GRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 383 ~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
.. +..|+.+.. +++.|
T Consensus 346 ~~--------~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 346 SQ--------PDWIAICFG-KKLEI 361 (364)
T ss_pred cC--------CCEEEEEec-CeeeE
Confidence 74 567776653 34443
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=4.9e-21 Score=160.60 Aligned_cols=246 Identities=15% Similarity=0.221 Sum_probs=183.4
Q ss_pred EEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeeccCCCccEEEEEEeCC---EEEEEEcCC
Q 046226 86 SSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRLKAKTSMVVAMEVSHD---RVYAAYGDG 152 (434)
Q Consensus 86 ~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg 152 (434)
..+.||+++|..++| +++.||+|+.|.+|.||.+... +.+..+.+|...|--++|+|. .|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346789999999999 8999999999999999998653 456678899999999999995 899999999
Q ss_pred eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226 153 KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI 232 (434)
Q Consensus 153 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 232 (434)
.|.+|++.+++....+ .|...|.++.|+.+|.+|++.+.|..|+|||.++++.+..-
T Consensus 155 ~v~iWnv~tgeali~l-----------------------~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITL-----------------------DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred eEEEEeccCCceeeec-----------------------CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 9999999988776665 49999999999999999999999999999999999999988
Q ss_pred ccCcc-CeEEEEEcCCCeEEEEe----CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEE-EcCCCe
Q 046226 233 QAHSE-PINALVVADDGVLYSAS----DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYG-GCTDGY 306 (434)
Q Consensus 233 ~~~~~-~v~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~ 306 (434)
.+|.+ .-..+.|-.++.+++.+ .+..+-+||....... .....+.. ...|.-=-|++|.+.++. |-.|+.
T Consensus 212 ~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEecc-CCceEEeeecCCCCEEEEEecCCcc
Confidence 77865 23345566677555554 4678999997632222 22223332 334555557787776654 556999
Q ss_pred EEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226 307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 359 (434)
|+.|.+.....-..+..++... .+-..+.+-++.-+-.+.....++|.+.+.
T Consensus 288 IRYyEit~d~P~~hyln~f~S~-epQRG~g~mPKRGl~Vs~cEI~rfyKl~~~ 339 (472)
T KOG0303|consen 288 IRYFEITNEPPFVHYLNTFSSK-EPQRGMGFMPKRGLDVSKCEIARFYKLHER 339 (472)
T ss_pred eEEEEecCCCceeEEecccccC-CccccccccccccccchHHHHHHHHHhhcc
Confidence 9999987665545555444332 344556665555444555555666666554
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.6e-20 Score=160.33 Aligned_cols=268 Identities=13% Similarity=0.138 Sum_probs=191.7
Q ss_pred ecCCCceeEeeccCCCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCCCce-eeEeeeccCCCCceeEEEecccccc
Q 046226 117 WKQPEFTECGRLKAKTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDNGVK-HVKLATIPKTGGAVRNLIVGKDKMM 191 (434)
Q Consensus 117 wd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
.|+.+......++.+..+|++++|+|. .+++|..-|.|-+||+...+... .+. .+.
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~-------------------~f~ 231 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY-------------------LFT 231 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE-------------------Eec
Confidence 344455555667778999999999995 67777779999999996332211 111 112
Q ss_pred CcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccc
Q 046226 192 KHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFY 267 (434)
Q Consensus 192 ~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~ 267 (434)
.|..+|.++.|+|. -..+++.+.||+|++-|++.... +..+......+..+.++.+. .++.+..=|...+||++..
T Consensus 232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD 311 (498)
T ss_pred cCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC
Confidence 69999999999995 46799999999999999987643 33333345567788888777 6777777779999999832
Q ss_pred cCcceeEEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEE
Q 046226 268 SENQLHTLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVIS 344 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 344 (434)
......+..|...|.+++++|- ..+|++++.|++.+|||++.........-..-.|...|.+..|+ +..|++
T Consensus 312 -----~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 312 -----GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred -----CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence 2223345567779999999995 46789999999999999986655553222334788888887776 446999
Q ss_pred ecCCCcEEEEeccC-CCceeeEEEeecccc------ceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 345 GSADSTSRVWAREQ-DGRHTMLAVLVGHRG------PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 345 ~~~dg~i~iwd~~~-~~~~~~~~~~~~h~~------~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
.+.|..|+|||..- +....++..+. |.. ......|.|+ ..+|++|-.-..|-|+|-+.++.++
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~---------~~li~vg~~~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPD---------YNLIVVGRYPRPIDVFDGNGGQMVC 456 (498)
T ss_pred eccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCC---------ccEEEEeccCcceeEEcCCCCEEee
Confidence 99999999999841 11112333322 221 2334677777 8999999999999999988777444
Q ss_pred c
Q 046226 418 G 418 (434)
Q Consensus 418 ~ 418 (434)
.
T Consensus 457 e 457 (498)
T KOG4328|consen 457 E 457 (498)
T ss_pred e
Confidence 3
No 169
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.1e-20 Score=165.58 Aligned_cols=272 Identities=16% Similarity=0.220 Sum_probs=191.3
Q ss_pred ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC--------ceeEeeccCCCccEEEEEEeCC--EEE
Q 046226 79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE--------FTECGRLKAKTSMVVAMEVSHD--RVY 146 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~l~~~~~--~l~ 146 (434)
.+.|..-.++..|.+.|..++| ....|++++.||+|++|+++. .+.+.++.+|.++|.|+++.++ .++
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 4457777789999999999999 678999999999999999932 4678889999999999999887 899
Q ss_pred EEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q 046226 147 AAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS 226 (434)
Q Consensus 147 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 226 (434)
+|+.||+|+.|++........ ..........+.||.+.|+.+++++....|++++.||+++.|+....
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~d------------s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDD------------SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred eeccCceeeeeccCCCCCccc------------ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 999999999998752211100 01111122345589999999999999999999999999999998665
Q ss_pred eeEEEcccC--ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEE----EecccccCeEEEEEecCCCEE
Q 046226 227 KCIETIQAH--SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLIL----TLTAKYSPVKTLTLTLDDGLL 298 (434)
Q Consensus 227 ~~~~~~~~~--~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l 298 (434)
.. .++... .+.-.++.+-... ..++. ...+.+++............. ........+..+.++|...+.
T Consensus 429 ~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 429 SP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred Cc-cccCCccccCCcceEeeccchhHhhhhh---cccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 54 334332 2233455554332 22222 233333332111111111110 011122457788899999999
Q ss_pred EEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecccc
Q 046226 299 YGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG 373 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 373 (434)
+++..|+.|+++|... ..+......|...+++++++ |-+|++++.||.+++|.+... .++.....|..
T Consensus 505 ~~~hed~~Ir~~dn~~----~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~r~ 574 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKT----GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAHRK 574 (577)
T ss_pred EecccCCceecccccc----cccchheeeccceecceeecCCCceEEeecCCceeehhhccch---heeeccccccc
Confidence 9999999999999653 34445566888889998886 559999999999999999765 66666555543
No 170
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=4.6e-18 Score=159.12 Aligned_cols=284 Identities=28% Similarity=0.500 Sum_probs=216.8
Q ss_pred EEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-eEeeccCCCc-cEEEEEE-eCC---EEEEEEc-CCeEEEe
Q 046226 87 SVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-ECGRLKAKTS-MVVAMEV-SHD---RVYAAYG-DGKIRVW 157 (434)
Q Consensus 87 ~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~~~~-~v~~l~~-~~~---~l~~~s~-dg~i~vw 157 (434)
.+..|...|.++.+ .+..++.++.|+.+.+|+..... ....+..+.. .+..+.+ .++ .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 46679999999999 78889989999999999998876 6666666443 6777777 554 3334344 8999999
Q ss_pred ecCC-CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccC
Q 046226 158 RSTW-DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAH 235 (434)
Q Consensus 158 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~ 235 (434)
+... ....... ..|...|..++|+|++..+++++. |+.+++|++..+..+..+..|
T Consensus 140 ~~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (466)
T COG2319 140 DLSTPGKLIRTL----------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH 197 (466)
T ss_pred EecCCCeEEEEE----------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC
Confidence 9876 2222222 269999999999999999988885 999999999998889999999
Q ss_pred ccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEE-EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 236 SEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLIL-TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 236 ~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
...|.+++++|++ .++.+ +.|+.|++||.. ...... .+..|.... ...|++++.++++++.|+.+++|++
T Consensus 198 ~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS------TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred CCceEEEEEcCCcceEEEEecCCCcEEEEECC------CCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 9999999999888 34444 999999999765 222233 466666664 3389999989999999999999998
Q ss_pred CcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEe--eccccceeEEEEeecccCCC
Q 046226 313 GWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVL--VGHRGPIRCAIAFLGRFGEE 388 (434)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~ 388 (434)
........ ...+|...+.++.+.+ ..+++++.|+.+++|+..... ..... ..|...+..+.+ +..
T Consensus 271 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~---- 339 (466)
T COG2319 271 RSSSSLLR---TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSF-SPD---- 339 (466)
T ss_pred cCCCcEEE---EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEE-CCC----
Confidence 75544111 1157788899888875 677778889999999888763 33333 478888888988 531
Q ss_pred CCCcccEEEEe-ecCCeEEEEecCCCC
Q 046226 389 TEDEYCTICTG-SLDGVLKMWRVTRPK 414 (434)
Q Consensus 389 ~~~~~~~l~s~-~~Dg~v~iw~~~~~~ 414 (434)
+..++.+ ..|+.+.+|++....
T Consensus 340 ----~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 340 ----GSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ----CCEEEEeecCCCcEEeeecCCCc
Confidence 2455555 688999999998776
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.8e-20 Score=161.62 Aligned_cols=222 Identities=14% Similarity=0.169 Sum_probs=159.1
Q ss_pred ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeec-cCCCccEEEEEEeCC----EEEEEEcC
Q 046226 79 SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRL-KAKTSMVVAMEVSHD----RVYAAYGD 151 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~~~~----~l~~~s~d 151 (434)
++.......|.||+|-|.|+.| +|.+|++|++|-.+.|||....+++..+ .+|...|.++.|-|. .+++|+.|
T Consensus 37 lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 37 LRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred HhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 4445566779999999999999 9999999999999999999888887776 579999999999884 78899999
Q ss_pred CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCee--
Q 046226 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKC-- 228 (434)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~-- 228 (434)
..|+++|+...+.-.. -.........+..|...|.-++..|++ ..+.++++||+|+-+|++....
T Consensus 117 k~i~lfdl~~~~~~~~------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGM------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred ceEEEEeccccccccc------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 9999999974321110 001111111234699999999999988 7899999999999999986321
Q ss_pred -----EE---EcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc----ce--e-------EEEEEecccc--
Q 046226 229 -----IE---TIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN----QL--H-------TLILTLTAKY-- 283 (434)
Q Consensus 229 -----~~---~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~----~~--~-------~~~~~~~~~~-- 283 (434)
.. .+...--...|+.++|.. +|+.|+.|-..++||.+..-.. .. . .......+|.
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 11 111122356789999987 9999999999999995411000 00 0 0001111111
Q ss_pred ---------cCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 284 ---------SPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 284 ---------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
..++-+.|+|+|.-|++.-..-.|++||+
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 12566789999988888777778888874
No 172
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.9e-21 Score=182.52 Aligned_cols=239 Identities=16% Similarity=0.185 Sum_probs=187.3
Q ss_pred ccEEEEEE--cC----CEEEEEeCCCeEEEecCCC------ceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEe
Q 046226 93 GQILCIAV--GN----GFIYTGSDSNVIRIWKQPE------FTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVW 157 (434)
Q Consensus 93 ~~v~~~~~--~~----~~l~tg~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vw 157 (434)
.+-+.++| .+ .+||.|..||.|.+||... ...+.+...|.+.|..+.|++. .|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34567888 22 3699999999999999765 2345567789999999999984 88999999999999
Q ss_pred ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQAHS 236 (434)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 236 (434)
|+...+...... .....+.|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..+.
T Consensus 145 Dlnn~~tP~~~~--------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 145 DLNKPETPFTPG--------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred ccCCcCCCCCCC--------------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC
Confidence 998644322221 0135678999999865 4567889999999999999988887777655
Q ss_pred c--CeEEEEEcCCC--eEEEEeCC---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEE
Q 046226 237 E--PINALVVADDG--VLYSASDD---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIH 308 (434)
Q Consensus 237 ~--~v~~~~~~~~~--~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 308 (434)
. .+..++|+|+. .+++++.| -.|.+||+| ........+.+|...|.++.|++.+ ++|++++.|+.|.
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR-----~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR-----FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeeccc-----ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 4 47789999998 77777665 369999998 3344556678999999999999966 8899999999999
Q ss_pred EEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEeccCCC
Q 046226 309 YWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWAREQDG 360 (434)
Q Consensus 309 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~ 360 (434)
+|+.++.+ ....+......+..+.|.+ ..+++++.||.|.||.+....
T Consensus 280 ~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 280 CWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred EecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99976543 3344555667888888874 489999999999999998753
No 173
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.7e-19 Score=163.53 Aligned_cols=274 Identities=12% Similarity=0.110 Sum_probs=195.1
Q ss_pred CCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226 111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK 187 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
++.+.||++.........-.-...|.++.|+|. .++.|+.+|.|.+||++.........+..
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--------------- 285 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--------------- 285 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc---------------
Confidence 347999999876333333334677999999874 88888889999999998765521111100
Q ss_pred ccccCcCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCCCee------EEEcc------cCccCeEEEEEcCCC--eEE
Q 046226 188 DKMMKHMGPITSIAINVSD--DTLYSASLDKTIKVWRIRDSKC------IETIQ------AHSEPINALVVADDG--VLY 251 (434)
Q Consensus 188 ~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~~~--~l~ 251 (434)
....|..+|..+.|..+. .-|++++.||.|+.|+++.... ..... .....++++.|.+.. .++
T Consensus 286 -~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 286 -LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred -ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 112599999999998654 4499999999999998864322 11111 123468899998876 899
Q ss_pred EEeCCCeEEEEecccccCc--ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc
Q 046226 252 SASDDATVRVWRRYFYSEN--QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT 329 (434)
Q Consensus 252 s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 329 (434)
.|+.+|.|..-+....... ...+.......|.++|+++.++|-+..++..+.|.+++||.... .......+..+.
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---~~~Pl~~~~~~~ 441 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---IASPLLSLDSSP 441 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC---CCCcchhhhhcc
Confidence 9999999887433211111 12233456677889999999999776666655699999998642 222223445666
Q ss_pred cceEEEEeeCC---EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226 330 HAVMCLASVAN---YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406 (434)
Q Consensus 330 ~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 406 (434)
..+++++|++. .|+++..||.|.+||+..... .++....-+....+.+.|++. |++|+.|+..|+++
T Consensus 442 ~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~---------g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 442 DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPN---------GKLLAVGDANGTTH 511 (555)
T ss_pred ceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCcccccccccccceeecCCC---------CcEEEEecCCCcEE
Confidence 77999999854 899999999999999987532 455555555666777888887 89999999999999
Q ss_pred EEecCCC
Q 046226 407 MWRVTRP 413 (434)
Q Consensus 407 iw~~~~~ 413 (434)
+|++...
T Consensus 512 ~~~l~~~ 518 (555)
T KOG1587|consen 512 ILKLSES 518 (555)
T ss_pred EEEcCch
Confidence 9999643
No 174
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.4e-19 Score=147.75 Aligned_cols=241 Identities=13% Similarity=0.144 Sum_probs=166.0
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226 135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA 212 (434)
Q Consensus 135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 212 (434)
..|+.|++. +|++|+.||.|.|||+.+...-+.+ .+|..+|.+++|+++|+.|+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----------------------saH~~pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----------------------SAHVRPITSLCWSRDGRKLLTS 83 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhh----------------------hccccceeEEEecCCCCEeeee
Confidence 788999985 8999999999999999876543333 2699999999999999999999
Q ss_pred ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecc--cccCeEE
Q 046226 213 SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTA--KYSPVKT 288 (434)
Q Consensus 213 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~ 288 (434)
+.|..|.+||+..|.+++.+. ...+|....|+|.. ..++.-.+..-.+-++. . .....+..-.. .+....+
T Consensus 84 S~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s---~-~~h~~Lp~d~d~dln~sas~ 158 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS---D-PKHSVLPKDDDGDLNSSASH 158 (405)
T ss_pred cCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEec---C-CceeeccCCCcccccccccc
Confidence 999999999999999998887 67899999999876 44444444334444433 0 11111111100 0112233
Q ss_pred EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-cceEEEE--eeCCEEEEecCCCcEEEEeccCC------
Q 046226 289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-HAVMCLA--SVANYVISGSADSTSRVWAREQD------ 359 (434)
Q Consensus 289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~--~~~~~l~s~~~dg~i~iwd~~~~------ 359 (434)
..|.+.|+++++|...|.+.+||..+.+... .++-.. ..|..+. ..|++|++-+.|..||.|+++.-
T Consensus 159 ~~fdr~g~yIitGtsKGkllv~~a~t~e~va----s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 159 GVFDRRGKYIITGTSKGKLLVYDAETLECVA----SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred ccccCCCCEEEEecCcceEEEEecchheeee----eeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 4688899999999999999999976543322 222222 3455544 45889999999999999998731
Q ss_pred CceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEeec-CCeEEEEecCCCCc
Q 046226 360 GRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSL-DGVLKMWRVTRPKS 415 (434)
Q Consensus 360 ~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~v~iw~~~~~~~ 415 (434)
...++.+.++. ..-.=.+++|+.+ |.+++.++. -..++||.-..|..
T Consensus 235 ~e~e~~~K~qDvVNk~~Wk~ccfs~d---------geYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQWKKCCFSGD---------GEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred CCcChhHHHHHHHhhhhhhheeecCC---------ccEEEeccccceeEEEEecCCcce
Confidence 11111111111 1112235667766 888887764 45799999887754
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.9e-19 Score=144.12 Aligned_cols=274 Identities=18% Similarity=0.223 Sum_probs=195.0
Q ss_pred CCCeEEEecCCCce--e-EeeccCCCccEEEEEEeCC---EEEEEEcC-------CeEEEeecCCCCCceeeEeeeccCC
Q 046226 110 DSNVIRIWKQPEFT--E-CGRLKAKTSMVVAMEVSHD---RVYAAYGD-------GKIRVWRSTWDNGVKHVKLATIPKT 176 (434)
Q Consensus 110 ~dg~i~iwd~~~~~--~-~~~~~~~~~~v~~l~~~~~---~l~~~s~d-------g~i~vwd~~~~~~~~~~~~~~~~~~ 176 (434)
.|+.|.+.++..+. . ...+..|.+.|+.++-+|- .|+++..+ -.+.||.+......... .+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~------~t 111 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS------ST 111 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc------ch
Confidence 36778877765432 2 2346678899999999884 45555442 34678987644322110 00
Q ss_pred CCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-EEEcc-----cCccCeEEEEEcC--CC
Q 046226 177 GGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-IETIQ-----AHSEPINALVVAD--DG 248 (434)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~ 248 (434)
-..+..+.. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+.. +..+. .+....++-+|+| ++
T Consensus 112 lE~v~~Ldt------eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 112 LECVASLDT------EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred hhHhhcCCH------HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 011111111 3556899999999999999887 88999999987655 33332 2455678888998 44
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEEcCCCeEEEEEcCcccccccccCcccC
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGCTDGYIHYWHKGWFSAQLQYGGALQG 327 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 327 (434)
..+....|+++..||++. ..+.......|...+..+.|.|+.+ +|++++.||.|+|||.+..+.. ...+.+
T Consensus 185 nqv~tt~d~tl~~~D~RT-----~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p---v~el~~ 256 (370)
T KOG1007|consen 185 NQVATTSDSTLQFWDLRT-----MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP---VQELPG 256 (370)
T ss_pred ceEEEeCCCcEEEEEccc-----hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc---ccccCC
Confidence 566667889999999982 2223334456778899999999765 6788899999999999754433 457889
Q ss_pred cccceEEEEee---CCEEEEecCCCcEEEEeccCCC---------------------c-----eeeEEEeeccccceeEE
Q 046226 328 HTHAVMCLASV---ANYVISGSADSTSRVWAREQDG---------------------R-----HTMLAVLVGHRGPIRCA 378 (434)
Q Consensus 328 ~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~---------------------~-----~~~~~~~~~h~~~v~~~ 378 (434)
|...|+++.|+ .+++++|+.|..|.+|....-. + ...+.++..|.+.|+++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 99999999997 4589999999999999653211 0 12345778899999999
Q ss_pred EEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
+|+... .-++|+-+.||.+.|=++..
T Consensus 337 aWSsad--------PWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 337 AWSSAD--------PWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeccCC--------CeeEEEeccCceEEeecCCh
Confidence 999653 67899999999999977664
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=1.4e-18 Score=142.30 Aligned_cols=238 Identities=13% Similarity=0.138 Sum_probs=174.7
Q ss_pred EeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226 88 VLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST 160 (434)
Q Consensus 88 ~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~ 160 (434)
+.---.+|+|.+| +...+|++-....|.||.... .+...+++.|...|+.++|+|. +|++++.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334678999999 889999999999999998754 4577889999999999999995 99999999999999874
Q ss_pred CC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE----EcccC
Q 046226 161 WD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE----TIQAH 235 (434)
Q Consensus 161 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~ 235 (434)
.+ .....+. +..++..++++.|+|.++.|++|+....|.||-++...--. .-+.+
T Consensus 86 ~~~~Wkptlv--------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi 145 (361)
T KOG1523|consen 86 SGGTWKPTLV--------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI 145 (361)
T ss_pred CCCeecccee--------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence 33 2222221 12589999999999999999999999999999887644321 22346
Q ss_pred ccCeEEEEEcCCC-eEEEEeCCCeEEEEeccccc------------CcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226 236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYS------------ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 302 (434)
...|+++.|+|++ +|++|+.|+..|+|...... ......++..+....+.+..+.|+|+|..|+-.+
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 7789999999999 99999999999999754111 1111222333334567899999999999999999
Q ss_pred CCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCC
Q 046226 303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSAD 348 (434)
Q Consensus 303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~d 348 (434)
.|+.+.+-|.......... .....-+..++.| +.+.++.++.|
T Consensus 226 Hds~v~~~da~~p~~~v~~---~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPSERVQS---VATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred CCCceEEeecCCCchhccc---hhhccCCceeeEeecCCceeecCCC
Confidence 9999999987644322221 1122234455555 33444444444
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2e-19 Score=158.71 Aligned_cols=290 Identities=16% Similarity=0.154 Sum_probs=220.2
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccc-----eeeeEEEeeccccEEEEEE----cCCEE
Q 046226 35 PSFSTFPYSPPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSS-----YRCISSVLKKDGQILCIAV----GNGFI 105 (434)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~----~~~~l 105 (434)
++...+.+-|....-.+.+|...+.+....+.+.-+++++.+++++. ++|++++. -.+.|.|++| +-..|
T Consensus 380 Psp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vL 458 (733)
T KOG0650|consen 380 PSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVL 458 (733)
T ss_pred CChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeE
Confidence 34445555667777789999999999988899999999999987654 56677665 4568999999 34455
Q ss_pred EEEeCCCeEEEecCCCc-------------------------------------eeEeeccCCCccEEEEEEeCC--EEE
Q 046226 106 YTGSDSNVIRIWKQPEF-------------------------------------TECGRLKAKTSMVVAMEVSHD--RVY 146 (434)
Q Consensus 106 ~tg~~dg~i~iwd~~~~-------------------------------------~~~~~~~~~~~~v~~l~~~~~--~l~ 146 (434)
|++-.+. +.|-+..-| .-+...-.|...|..+.|+.. +|+
T Consensus 459 AvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 459 AVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 5554443 444432111 001122236778999999875 787
Q ss_pred EEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226 147 AAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI 223 (434)
Q Consensus 147 ~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 223 (434)
+... ...|.|.++........+ ....+.|.++.|+|...+|++++ -..|++||+
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF----------------------~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL 594 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPF----------------------RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDL 594 (733)
T ss_pred EeccCCCcceEEEEecccccccCch----------------------hhcCCceeEEEecCCCceEEEEe-ccceEEEeh
Confidence 7765 467888887655443333 24667899999999999999998 467999999
Q ss_pred CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226 224 RDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 302 (434)
.....++.+......|..++++|.| .|+.++.|+.+..+|+. ...+....+..|...+++++|++.-.++++|+
T Consensus 595 ~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDld-----lsskPyk~lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 595 SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLD-----LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcc-----cCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence 9888888888788899999999999 99999999999999987 23345566778999999999999999999999
Q ss_pred CCCeEEEEEcCccc-----ccccccCcccCcccc----eEEEEeeCC--EEEEecCCCcEEEE
Q 046226 303 TDGYIHYWHKGWFS-----AQLQYGGALQGHTHA----VMCLASVAN--YVISGSADSTSRVW 354 (434)
Q Consensus 303 ~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~----v~~~~~~~~--~l~s~~~dg~i~iw 354 (434)
.||.+.||--.-.. ........+.+|... |....|++. +|++++.||+|++|
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999998633221 223445677888766 788888876 89999999999998
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=9.7e-21 Score=172.92 Aligned_cols=288 Identities=20% Similarity=0.271 Sum_probs=212.9
Q ss_pred CCCCCc-ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEE
Q 046226 73 SSSPET-SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYA 147 (434)
Q Consensus 73 ~~~~~~-~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~ 147 (434)
.+.+.+ +...+-+..+.+|..+|+|..| .|.++++|+.|..|+||..+++.++....+|.+.|+.++.+.+ .+++
T Consensus 170 ~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaa 249 (1113)
T KOG0644|consen 170 IAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAA 249 (1113)
T ss_pred ecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhh
Confidence 334443 3444556678999999999999 7999999999999999999999999999999999999999886 7888
Q ss_pred EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe
Q 046226 148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK 227 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 227 (434)
++.|..|++|.+..+..+..+ .+|.+.|++++|+|-. +.+.||++++||.+- .
T Consensus 250 aS~D~vIrvWrl~~~~pvsvL----------------------rghtgavtaiafsP~~----sss~dgt~~~wd~r~-~ 302 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVL----------------------RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-E 302 (1113)
T ss_pred cccCceEEEEecCCCchHHHH----------------------hccccceeeeccCccc----cCCCCCceEeccccc-c
Confidence 899999999998877665554 3799999999999854 777899999999872 1
Q ss_pred eEEEc----c-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEE
Q 046226 228 CIETI----Q-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYG 300 (434)
Q Consensus 228 ~~~~~----~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 300 (434)
.+... + .....+.++.+...+ .+++++.|+.-..|.......... .+.-+..+. ...+.++
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~------------~lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN------------LLIFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc------------ceEEEecccccccccee
Confidence 11111 1 123456667777777 899999999999987651111111 111111111 1246667
Q ss_pred EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226 301 GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC 377 (434)
Q Consensus 301 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 377 (434)
+-.+-.+.+|++.. ..+.+.+.+|...+..+.++ .....+++.||...|||+-.+-..+. .+.+| +.+..
T Consensus 371 ar~~~~~~vwnl~~----g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~--y~~gh-~kl~d 443 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYT----GQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH--YFIGH-GKLVD 443 (1113)
T ss_pred eeeeeEeeeeeccc----chhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee--eeccc-ceeec
Confidence 77788899999753 33445666888888888765 56788999999999999988732222 22454 45666
Q ss_pred EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
-+|+++ |..++....-|.++|.....++.
T Consensus 444 ~kFSqd---------gts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 444 GKFSQD---------GTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cccCCC---------CceEecCCCCCceEEeccCCCcc
Confidence 789988 88899888889999988776654
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=1.8e-17 Score=149.04 Aligned_cols=272 Identities=13% Similarity=0.117 Sum_probs=171.3
Q ss_pred EEEeCCCeEEEecCCC-ce--eEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 106 YTGSDSNVIRIWKQPE-FT--ECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 106 ~tg~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
++...|+.|++|++.+ ++ .+..+. +.+....++++|+ .|++++ .++.|.+|++.....+......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-------- 76 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-------- 76 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--------
Confidence 3446789999999964 32 444454 3455778899987 666654 4889999998632222211100
Q ss_pred eeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCC-C---eeEEEcccCccCeEEEEEcCCC-eE-EE
Q 046226 180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRD-S---KCIETIQAHSEPINALVVADDG-VL-YS 252 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~-~---~~~~~~~~~~~~v~~~~~~~~~-~l-~s 252 (434)
........++|+|++++|++++. ++.|.+|++++ + +.+..+. +.....+++++|++ ++ ++
T Consensus 77 ------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~ 143 (330)
T PRK11028 77 ------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVP 143 (330)
T ss_pred ------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEe
Confidence 12234578999999999988764 78999999964 2 2233332 23446778899998 55 55
Q ss_pred EeCCCeEEEEecccccCcceeE---EEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccccCcccC-
Q 046226 253 ASDDATVRVWRRYFYSENQLHT---LILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQYGGALQG- 327 (434)
Q Consensus 253 ~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~- 327 (434)
...++.|.+||+... ..... ...... .......+.|+|++++++++.. ++.|.+||+.......+....+..
T Consensus 144 ~~~~~~v~v~d~~~~--g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 144 CLKEDRIRLFTLSDD--GHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred eCCCCEEEEEEECCC--CcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 566799999998721 11100 001111 2245678999999999988876 899999998642222221111111
Q ss_pred -----cccceEEE--EeeCCEEEEec-CCCcEEEEeccCCC-ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEE
Q 046226 328 -----HTHAVMCL--ASVANYVISGS-ADSTSRVWAREQDG-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICT 398 (434)
Q Consensus 328 -----~~~~v~~~--~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s 398 (434)
+......+ ..++++++++. .++.|.+|++...+ ....+...... .....+.++|+ |++|++
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~d---------g~~l~v 290 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHS---------GKYLIA 290 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCC---------CCEEEE
Confidence 11112233 45677888775 47899999997643 22233333221 24557889988 888887
Q ss_pred eec-CCeEEEEecCC
Q 046226 399 GSL-DGVLKMWRVTR 412 (434)
Q Consensus 399 ~~~-Dg~v~iw~~~~ 412 (434)
+.. +++|.+|+++.
T Consensus 291 a~~~~~~v~v~~~~~ 305 (330)
T PRK11028 291 AGQKSHHISVYEIDG 305 (330)
T ss_pred EEccCCcEEEEEEcC
Confidence 665 89999999864
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=8.3e-19 Score=143.70 Aligned_cols=267 Identities=14% Similarity=0.153 Sum_probs=192.2
Q ss_pred CCCCCCCCCCCccCCCCCCCcccceeeeEE-----------------Eee-ccccEEEEEE---------cCCEEEEEeC
Q 046226 58 LSSPRHPFNPTAAAGSSSPETSSSYRCISS-----------------VLK-KDGQILCIAV---------GNGFIYTGSD 110 (434)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-h~~~v~~~~~---------~~~~l~tg~~ 110 (434)
......++++..+.+.+.+..+..|+.-.. ++- ..+.|...+| +.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 445566778887777777776665555322 111 2345777777 4568999999
Q ss_pred CCeEEEecCCCceeEeeccC--CCc---cEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEE
Q 046226 111 SNVIRIWKQPEFTECGRLKA--KTS---MVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNL 183 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~~~~~--~~~---~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 183 (434)
|.-|++||..+++....+.+ |.. ...+++|+|| .-+.++....|+++|+...... ........
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~---------- 201 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTK---------- 201 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhc----------
Confidence 99999999999998877654 333 4578999998 4455667889999998543222 11111000
Q ss_pred EeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CCeEE
Q 046226 184 IVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DATVR 260 (434)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~ 260 (434)
.-.+..+-|.|++|+|-. +.++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++| .|++|.. |..|.
T Consensus 202 -----~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 202 -----GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred -----ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 012457789999999954 589999999999999988899999999999999999999999 8888874 78899
Q ss_pred EEecccccCcceeEEEEEeccccc-CeEE--EEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYS-PVKT--LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 337 (434)
.||++ ....++..+..|.. .-.. ....|++++|++|+.||.|++||+..... ....+..+...+..+++
T Consensus 277 ~WDiR-----~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 277 CWDIR-----YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN---EVSVTGNYSDTVNGVSL 348 (406)
T ss_pred EEeeh-----hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC---cccccccccccccceec
Confidence 99998 34444555555544 2223 44567899999999999999999865332 23355678888888888
Q ss_pred eCC--EEEEecC
Q 046226 338 VAN--YVISGSA 347 (434)
Q Consensus 338 ~~~--~l~s~~~ 347 (434)
++- ++++++.
T Consensus 349 nP~mpilatssG 360 (406)
T KOG2919|consen 349 NPIMPILATSSG 360 (406)
T ss_pred CcccceeeeccC
Confidence 876 5555553
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=4e-18 Score=162.20 Aligned_cols=304 Identities=17% Similarity=0.257 Sum_probs=198.0
Q ss_pred CcccceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc-------eeEeeccCCCccEEEEEEeC--CE
Q 046226 77 ETSSSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF-------TECGRLKAKTSMVVAMEVSH--DR 144 (434)
Q Consensus 77 ~~~~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~l~~~~--~~ 144 (434)
+....+..+..+..|+..|..++. ++.+++||+.||+|++||.... +...++......+.++...+ +.
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 335566778889999999999998 5689999999999999997541 22233333456677766655 58
Q ss_pred EEEEEcCCeEEEeecCCCCCceee-EeeeccCCCCceeEEEeccccccCcCCCe-EEEEEec-CCC-EEEEEecCCcEEE
Q 046226 145 VYAAYGDGKIRVWRSTWDNGVKHV-KLATIPKTGGAVRNLIVGKDKMMKHMGPI-TSIAINV-SDD-TLYSASLDKTIKV 220 (434)
Q Consensus 145 l~~~s~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~-~~~-~l~s~~~dg~i~v 220 (434)
+++++.||.|++.+++..+..+.. .....++. ...+.+ ..-+|.. .+. .++.+...+.|..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~---------------~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL---------------KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccc---------------cCCCceEEeecccccccceeEEEEEeccceEE
Confidence 999999999999998763211111 00000000 122223 3333332 233 6788888899999
Q ss_pred EEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccCeEEEEEecC--
Q 046226 221 WRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSPVKTLTLTLD-- 294 (434)
Q Consensus 221 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~-- 294 (434)
||++......+++. ..+.|++++.+|.+ .++.|+..|.+.+||++ ....+... ..+..++..+..+|-
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR------F~~~i~sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR------FRVPILSWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee------cCceeecccCcccCCcceEEeeccCC
Confidence 99988776666553 46789999999999 99999999999999999 33333322 233467888887773
Q ss_pred -CCEEEEE-c-CCCeEEEEEcCcccccccccCc---------cc-------CcccceEEEEee-CCEEEEecCCCcEEEE
Q 046226 295 -DGLLYGG-C-TDGYIHYWHKGWFSAQLQYGGA---------LQ-------GHTHAVMCLASV-ANYVISGSADSTSRVW 354 (434)
Q Consensus 295 -~~~l~~~-~-~dg~i~i~d~~~~~~~~~~~~~---------~~-------~~~~~v~~~~~~-~~~l~s~~~dg~i~iw 354 (434)
....+++ . ..+.|.+|++.++.....+... .. +....+.|.-.+ +..+++|+.|..||.|
T Consensus 1252 ~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~w 1331 (1431)
T KOG1240|consen 1252 QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKW 1331 (1431)
T ss_pred CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeec
Confidence 2344444 3 5788999998765433222111 00 111122222223 4589999999999999
Q ss_pred eccCCCce--------------------------ee-------------------EEE--------eeccccceeEEEEe
Q 046226 355 AREQDGRH--------------------------TM-------------------LAV--------LVGHRGPIRCAIAF 381 (434)
Q Consensus 355 d~~~~~~~--------------------------~~-------------------~~~--------~~~h~~~v~~~~~~ 381 (434)
|....... +. ... -..|.++|+++++.
T Consensus 1332 D~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1332 DPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred cCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence 97532110 00 000 01466778877776
Q ss_pred ecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226 382 LGRFGEETEDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 382 ~~~~~~~~~~~~~~l~s~~~Dg~v~iw~ 409 (434)
... ..+|++++.||.|+||.
T Consensus 1412 ~~~--------q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSE--------QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccC--------ccEEEEecCCCeeeecC
Confidence 553 56999999999999995
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.6e-19 Score=158.28 Aligned_cols=260 Identities=18% Similarity=0.279 Sum_probs=175.6
Q ss_pred eeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEe
Q 046226 126 GRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAIN 203 (434)
Q Consensus 126 ~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 203 (434)
.++..|...|..++|.+- .|++|+.||.|++|++......... .-..+. .+.+|.++|.|+++.
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~-------~~epi~-------tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEK-------DVEPIL-------TFRAHEGPVLCVVVP 353 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCcccc-------ceeeeE-------EEecccCceEEEEec
Confidence 356678889999999885 8999999999999999321110000 001111 234799999999999
Q ss_pred cCCCEEEEEecCCcEEEEEcCCC----------eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226 204 VSDDTLYSASLDKTIKVWRIRDS----------KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 204 ~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
+++..+++|+-||+|+.|++... .....+.+|.+.|..+++++.. .|++++.||+++.|+.. +...
T Consensus 354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~---~~~~ 430 (577)
T KOG0642|consen 354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT---EESP 430 (577)
T ss_pred CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccC---CcCc
Confidence 99999999999999999966421 2345677899999999999887 99999999999999876 1111
Q ss_pred eEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccC-cccC--cccceEEEEee--CCEEEEec
Q 046226 273 HTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGG-ALQG--HTHAVMCLASV--ANYVISGS 346 (434)
Q Consensus 273 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~--~~~~v~~~~~~--~~~l~s~~ 346 (434)
.........+...++.+-... .+.++...-+.-.++++........+.. ...+ ....+.-+.+. +.+.+++.
T Consensus 431 --~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h 508 (577)
T KOG0642|consen 431 --CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH 508 (577)
T ss_pred --cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc
Confidence 111111222333444443322 1222222222222333221111111100 0000 11223333443 45899999
Q ss_pred CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 347 ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 347 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
.|+.|+++|..++ ..+.....|...++++++.|+ |.+|++++.||.|++|++......
T Consensus 509 ed~~Ir~~dn~~~---~~l~s~~a~~~svtslai~~n---------g~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 509 EDRSIRFFDNKTG---KILHSMVAHKDSVTSLAIDPN---------GPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred cCCceeccccccc---ccchheeeccceecceeecCC---------CceEEeecCCceeehhhccchhee
Confidence 9999999999988 888888999999999999999 999999999999999999866543
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=1.8e-18 Score=145.32 Aligned_cols=207 Identities=18% Similarity=0.243 Sum_probs=155.5
Q ss_pred ccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCC-------eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeE
Q 046226 190 MMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDS-------KCIETIQAHSEPINALVVADDG--VLYSASDDATV 259 (434)
Q Consensus 190 ~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i 259 (434)
+.+|.++|..++|+|. ...|++|++|.+|.||++..+ +++..+.+|...|--++|+|.. .|++++.|..|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 3489999999999994 567899999999999998653 4677889999999999999987 89999999999
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccc--eEEEE-
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHA--VMCLA- 336 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--v~~~~- 336 (434)
.+||+. .......+. |...|.++.|+.+|.+|++.+.|..|+|||.+......+- .+|.+. ...+-
T Consensus 157 ~iWnv~------tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~----~~heG~k~~Raifl 225 (472)
T KOG0303|consen 157 SIWNVG------TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG----VAHEGAKPARAIFL 225 (472)
T ss_pred EEEecc------CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec----ccccCCCcceeEEe
Confidence 999987 333444444 9999999999999999999999999999998765544332 344432 22222
Q ss_pred eeCCEEEEec---CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE-EEeecCCeEEEEecCC
Q 046226 337 SVANYVISGS---ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI-CTGSLDGVLKMWRVTR 412 (434)
Q Consensus 337 ~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~v~iw~~~~ 412 (434)
-++..+.+|- .+..+-+||..+-.....+.++....+-+ -=-+.++ ..+| ++|-.|+.|+.|.+.+
T Consensus 226 ~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl-~PFyD~d---------t~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 226 ASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVL-LPFYDPD---------TSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ccCceeeeccccccccceeccCcccccCcceeEEeccCCceE-EeeecCC---------CCEEEEEecCCcceEEEEecC
Confidence 2466555553 47789999988876555566665544432 2223344 4444 5566799999999998
Q ss_pred CCccc
Q 046226 413 PKSSC 417 (434)
Q Consensus 413 ~~~~~ 417 (434)
..+..
T Consensus 296 d~P~~ 300 (472)
T KOG0303|consen 296 EPPFV 300 (472)
T ss_pred CCcee
Confidence 87543
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.9e-17 Score=138.22 Aligned_cols=227 Identities=14% Similarity=0.169 Sum_probs=166.9
Q ss_pred CCCCCCCccCCCCCCCcccceeeeE-----EEeeccccEEEEEEcCCEEEEEeCCC--eEEEecCCCceeEeeccCCCcc
Q 046226 62 RHPFNPTAAAGSSSPETSSSYRCIS-----SVLKKDGQILCIAVGNGFIYTGSDSN--VIRIWKQPEFTECGRLKAKTSM 134 (434)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~~ 134 (434)
.+..+...+..++.++. +.+++-. ......-.|.-+-|...++|..+.+. .+++.+++....+..+. ....
T Consensus 12 ~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~ 89 (391)
T KOG2110|consen 12 GFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTS 89 (391)
T ss_pred eeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCc
Confidence 35555666666665542 1222211 11112334555666778877776654 59999998888887765 3567
Q ss_pred EEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE--
Q 046226 135 VVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-- 212 (434)
Q Consensus 135 v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-- 212 (434)
|.++.++.++|+++-.+. |.|||++..+.+..+... ..+...+.++.++..+.+++--
T Consensus 90 IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~-------------------~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETT-------------------PPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred eEEEEEccceEEEEEccc-EEEEecccceeehhhhcc-------------------CCCccceEeeccCCCCceEEecCC
Confidence 999999999988887766 999999887766665321 1356667788888778888843
Q ss_pred ecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCe-EEEEecccccCcceeEEEEEecc--cccCeEE
Q 046226 213 SLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDAT-VRVWRRYFYSENQLHTLILTLTA--KYSPVKT 288 (434)
Q Consensus 213 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--~~~~v~~ 288 (434)
...|.|.+||+.+.+.+..+..|.+.+.+++|+++| +|+++++.|+ |||+.+. ..+....++. ....|.+
T Consensus 150 ~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~------~G~kl~eFRRG~~~~~IyS 223 (391)
T KOG2110|consen 150 TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP------EGQKLYEFRRGTYPVSIYS 223 (391)
T ss_pred CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC------CccEeeeeeCCceeeEEEE
Confidence 346899999999999999999999999999999999 9999999997 7899886 2222222222 2346889
Q ss_pred EEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226 289 LTLTLDDGLLYGGCTDGYIHYWHKGWFS 316 (434)
Q Consensus 289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 316 (434)
++|++++++|++.+..++|++|.+....
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999999999999999999986443
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=5e-18 Score=137.17 Aligned_cols=258 Identities=16% Similarity=0.163 Sum_probs=183.1
Q ss_pred ceeEeeccCCCccEEEEEEeC----C-EEEEEEc----CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccC
Q 046226 122 FTECGRLKAKTSMVVAMEVSH----D-RVYAAYG----DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMK 192 (434)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~~~----~-~l~~~s~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (434)
.+.+..+..+ -.+.++.|+. + +|+.|+. .+.|.|..+......... . ....
T Consensus 35 ~~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~-------------~------a~fd 94 (364)
T KOG0290|consen 35 RKEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVE-------------D------ANFD 94 (364)
T ss_pred cceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceec-------------c------CCCC
Confidence 3444445443 3578888873 2 7888775 455666554421110000 0 0136
Q ss_pred cCCCeEEEEEecCCC-----EEEEEecCCcEEEEEcCCCe----eEEEc-----ccCccCeEEEEEcCCC--eEEEEeCC
Q 046226 193 HMGPITSIAINVSDD-----TLYSASLDKTIKVWRIRDSK----CIETI-----QAHSEPINALVVADDG--VLYSASDD 256 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~-----~l~s~~~dg~i~vwd~~~~~----~~~~~-----~~~~~~v~~~~~~~~~--~l~s~~~d 256 (434)
|.-+++.+.|.|+.. +|++.+ -.+++|.+...+ +...+ ..+..++++..|+.-. ++.+++-|
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 999999999999863 455544 479999987321 11111 2356789999998655 89999999
Q ss_pred CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEE
Q 046226 257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL 335 (434)
Q Consensus 257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~ 335 (434)
-+..|||+... ........+..|...|..++|...+ +.+++.+.||.|++||++........... .....+...+
T Consensus 173 TTCTiWdie~~---~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~-p~~~~pLlRL 248 (364)
T KOG0290|consen 173 TTCTIWDIETG---VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED-PSPSTPLLRL 248 (364)
T ss_pred CeEEEEEEeec---cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC-CCCCCcceee
Confidence 99999999822 2334556677899999999999854 57889999999999999865543322221 2224577888
Q ss_pred Eee---CCEEEEecCC-CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 336 ASV---ANYVISGSAD-STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 336 ~~~---~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+|+ .+++|+-..| ..|.|.|++... .++..+++|.+.|+.++|.|.. ...|+|+|.|..+.|||+.
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS--------~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHS--------SSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCC--------CceeeecCCcceEEEEecc
Confidence 886 5688876665 479999998753 6888999999999999999996 8899999999999999998
Q ss_pred CCCc
Q 046226 412 RPKS 415 (434)
Q Consensus 412 ~~~~ 415 (434)
..-.
T Consensus 319 q~~~ 322 (364)
T KOG0290|consen 319 QMPR 322 (364)
T ss_pred cccc
Confidence 6543
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3e-16 Score=146.81 Aligned_cols=294 Identities=26% Similarity=0.440 Sum_probs=212.9
Q ss_pred CCcccce------eeeEEEeeccccEEEEEE--cCCEEEEEeC-CCeEEEecCCCceeEeeccCCCccEEEEEEeCCE--
Q 046226 76 PETSSSY------RCISSVLKKDGQILCIAV--GNGFIYTGSD-SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDR-- 144 (434)
Q Consensus 76 ~~~~~~~------~~~~~~~~h~~~v~~~~~--~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~-- 144 (434)
+..+..| .....+..|...|.+++| ++..+++++. |+.+++|+...+..+..+..|...|.+++|+|+.
T Consensus 133 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 133 DGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred CccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 5555555 455678889999999999 6778888885 9999999999988888899999999999999872
Q ss_pred EEEE-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226 145 VYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI 223 (434)
Q Consensus 145 l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 223 (434)
++++ +.|+.|++||...+..... .+.+|...+ ...|++++..+++++.|+.+++|++
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRS---------------------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEee---------------------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 4554 7899999997763333321 112466665 4489999989999999999999999
Q ss_pred CCCee-EEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226 224 RDSKC-IETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG 301 (434)
Q Consensus 224 ~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 301 (434)
..... +..+..|...+.++.+.|++ .+++++.|+.+.+||.... ....... ...|...+..+.+.+++..++.+
T Consensus 271 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---KLLSSLT-LKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred cCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC---ceEEEee-ecccCCceEEEEECCCCCEEEEe
Confidence 87664 44446788999999999966 7777888888999987611 1111111 34566678889883332455555
Q ss_pred -cCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC-CEEE-EecCCCcEEEEeccCCCceeeEEEeeccccceeEE
Q 046226 302 -CTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA-NYVI-SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCA 378 (434)
Q Consensus 302 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~ 378 (434)
..|+.+.+|++.... ... ...... .+..+.+.. ..+. .+..++.+.+|+.... ........+...+...
T Consensus 347 ~~~d~~~~~~~~~~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 418 (466)
T COG2319 347 GSDDGTIRLWDLRTGK-PLK---TLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG---SLLRNLDGHTSRVTSL 418 (466)
T ss_pred ecCCCcEEeeecCCCc-eeE---EecCCc-eEEEEEECCCCCEEEEecCCCceEEEecccC---eeeeeccCCCCcEEEE
Confidence 688999999987554 111 111111 144444433 2333 4788999999999986 4444443333778888
Q ss_pred EEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 379 IAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 379 ~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
.+.++ +..+++++.++.+++|+...
T Consensus 419 ~~~~~---------~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 419 DFSPD---------GKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECCC---------CcEEEEecCCCcEEEEeccC
Confidence 88888 88899999999999999987
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=156.11 Aligned_cols=261 Identities=13% Similarity=0.117 Sum_probs=193.3
Q ss_pred CCCCCCCCCCCCccCCCCCCCc----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC
Q 046226 57 PLSSPRHPFNPTAAAGSSSPET----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA 130 (434)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 130 (434)
.+....+.|++..+.-++.+.. ...+..++++++|.+.|+|++| +|..+|+|+.|..|.+|+-+-... .. ..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk-YS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK-YS 91 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee-ec
Confidence 5667777888888877776543 4456678999999999999999 999999999999999998543222 22 35
Q ss_pred CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226 131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT 208 (434)
Q Consensus 131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 208 (434)
|.+.|.|+.|+|- .|++++- ...-+|........+. .....|.+.+|..||++
T Consensus 92 H~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~------------------------kss~R~~~CsWtnDGqy 146 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH------------------------KSSSRIICCSWTNDGQY 146 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh------------------------hhheeEEEeeecCCCcE
Confidence 8999999999995 5666654 3467887654332221 24457889999999999
Q ss_pred EEEEecCCcEEEEEcCCCeeEEEc---ccCccCeEEEEEcCCC------eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226 209 LYSASLDKTIKVWRIRDSKCIETI---QAHSEPINALVVADDG------VLYSASDDATVRVWRRYFYSENQLHTLILTL 279 (434)
Q Consensus 209 l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 279 (434)
|+.|-.||+|.+-+-. ++....+ .+...+|.+++|+|.. .++......++.++.+. .+.+..-
T Consensus 147 lalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-------G~~Igk~ 218 (1081)
T KOG1538|consen 147 LALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-------GKQIGKD 218 (1081)
T ss_pred EEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-------ceeeccc
Confidence 9999999999998753 4333333 3467899999999853 67777888888888765 2222222
Q ss_pred cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEecc
Q 046226 280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWARE 357 (434)
Q Consensus 280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~ 357 (434)
....-...++.+.++|.+++.|+.|+.+++|-- ......++......|+.++. ++++++.|+.||+|..|++-
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-----~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-----DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEee-----cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 233345678999999999999999999999963 22333344445567777765 57799999999999999864
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=8.8e-19 Score=155.80 Aligned_cols=251 Identities=17% Similarity=0.176 Sum_probs=178.9
Q ss_pred EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCC
Q 046226 148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDS 226 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~ 226 (434)
++..|.|.||+++....+..--+.. .-....|+++.|.| |...|+++++||.|++|.+..+
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPG------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccc------------------cccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 4567999999997654432211111 12556799999998 6778999999999999998653
Q ss_pred -------eeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226 227 -------KCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL 297 (434)
Q Consensus 227 -------~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 297 (434)
.+...+..|...|+++.|+|-. .|++++.|-+|++||+. .......+.+|.+.|..++|+|+|+.
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~------~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA------NAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh------hhhhhheeccCcCceeEEEECCCCcc
Confidence 3456778899999999999966 89999999999999998 44455678899999999999999999
Q ss_pred EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC----CcEEEEeccCCCceeeEEEeecccc
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD----STSRVWAREQDGRHTMLAVLVGHRG 373 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~h~~ 373 (434)
+++.+.||+|++|+.+.............+..+.-.-++.+|+++++.+.| ..|.+||..+-.. ..+.
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~------- 806 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLY------- 806 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-Ccce-------
Confidence 999999999999998766555544333444444445566789988777765 4688888765311 1111
Q ss_pred ceeEEEEeecccCCCCCCc-ccEEEEeecCCeEEEEecCCCCcc---ccccccccCceeEee
Q 046226 374 PIRCAIAFLGRFGEETEDE-YCTICTGSLDGVLKMWRVTRPKSS---CGHLNKTNGHEYFEL 431 (434)
Q Consensus 374 ~v~~~~~~~~~~~~~~~~~-~~~l~s~~~Dg~v~iw~~~~~~~~---~~~~~~~~g~~~~~~ 431 (434)
...+...|...-+.+..| +-++++|-.|..|.+|++-...+. +.+.....+|..+.|
T Consensus 807 -t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~f 867 (1012)
T KOG1445|consen 807 -TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAF 867 (1012)
T ss_pred -eeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceee
Confidence 122333333333333333 557889999999999999877654 233344455555543
No 189
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=146.51 Aligned_cols=253 Identities=17% Similarity=0.171 Sum_probs=165.6
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCC----cccceeeeEEEeeccccEEEEEE---cC--CEEEEEeCCCeEEEecCCCce
Q 046226 53 LHTSPLSSPRHPFNPTAAAGSSSPE----TSSSYRCISSVLKKDGQILCIAV---GN--GFIYTGSDSNVIRIWKQPEFT 123 (434)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~---~~--~~l~tg~~dg~i~iwd~~~~~ 123 (434)
+.+..-..+.++++.+.+....... ...+..|+..+.+|..+++.+.+ .. .++++++.||.|++||...+.
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred cccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 3344445556666666666554332 25567888999999999999999 22 688899999999999999998
Q ss_pred eEeeccCCCccEEEEEEeC--------------C--EEEEEEc--CCeEEEeecCCCC-----Cceee---EeeeccCCC
Q 046226 124 ECGRLKAKTSMVVAMEVSH--------------D--RVYAAYG--DGKIRVWRSTWDN-----GVKHV---KLATIPKTG 177 (434)
Q Consensus 124 ~~~~~~~~~~~v~~l~~~~--------------~--~l~~~s~--dg~i~vwd~~~~~-----~~~~~---~~~~~~~~~ 177 (434)
++.++..+- ++..+.+.+ + .+.+.+. .+.++-+.+.+.. ..... +...... .
T Consensus 94 Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~-~ 171 (792)
T KOG1963|consen 94 LLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN-S 171 (792)
T ss_pred EEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC-C
Confidence 888765432 233333321 1 1111111 1222222211100 00000 0000000 0
Q ss_pred Ccee-----------------EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeEEEcccCc
Q 046226 178 GAVR-----------------NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCIETIQAHS 236 (434)
Q Consensus 178 ~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~ 236 (434)
+... ........-..|.-.+++.+++|.++++++|..||.|.+|.--. ......+.-|.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~ 251 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH 251 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence 0000 11122223345777899999999999999999999999996432 12345667799
Q ss_pred cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
..|+++.|+++| +|++|+..|.+.+|.+... . ...++.-.++|..+.++||+.+.+....|..|.+....+
T Consensus 252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~------~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETG------K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred cccceeEEecCCceEeecccceEEEEEeecCC------C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 999999999999 9999999999999987611 1 223444567999999999999999999999999998643
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=1.8e-17 Score=152.49 Aligned_cols=231 Identities=18% Similarity=0.246 Sum_probs=167.1
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCee-
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKC- 228 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~- 228 (434)
++.+.+|++......... ......|.|++|+|. ..+++.|+.+|.|.+||++.+..
T Consensus 221 ~~~~~vW~~~~p~~Pe~~----------------------~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~ 278 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELV----------------------LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT 278 (555)
T ss_pred CceEEEEecCCCCCceEE----------------------EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC
Confidence 457899998766322222 136778999999995 56778889999999999987654
Q ss_pred -EEEc----ccCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEec------ccccCeEEEEEec-
Q 046226 229 -IETI----QAHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLT------AKYSPVKTLTLTL- 293 (434)
Q Consensus 229 -~~~~----~~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~- 293 (434)
...+ ..|..++..+.|..+. .+++++.||.|..|+++............... .....++++.|.+
T Consensus 279 ~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~ 358 (555)
T KOG1587|consen 279 PPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT 358 (555)
T ss_pred CCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC
Confidence 2222 3488899999997655 59999999999999987443322221111111 2234688899988
Q ss_pred CCCEEEEEcCCCeEEEEEcCcccccc----cccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEE
Q 046226 294 DDGLLYGGCTDGYIHYWHKGWFSAQL----QYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLA 366 (434)
Q Consensus 294 ~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 366 (434)
+-..+++|+.+|.|..=+-....... +.......|.++|.++.++ ...+++++ |.+++||...... .++.
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~--~Pl~ 435 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIA--SPLL 435 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCC--Ccch
Confidence 55689999999999874322222222 2233556788899999876 45666666 9999999987321 6777
Q ss_pred EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
.+..+...|++++|||.+ ...++++..||.|.|||+....
T Consensus 436 ~~~~~~~~v~~vaWSptr--------pavF~~~d~~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTR--------PAVFATVDGDGNLDIWDLLQDD 475 (555)
T ss_pred hhhhccceeeeeEEcCcC--------ceEEEEEcCCCceehhhhhccc
Confidence 778888889999999997 7789999999999999997543
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=6.4e-18 Score=139.55 Aligned_cols=195 Identities=16% Similarity=0.228 Sum_probs=155.1
Q ss_pred CEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC-C--eEEEEeCCCeEEEEecccccCcceeEEEEEecccc
Q 046226 207 DTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD-G--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKY 283 (434)
Q Consensus 207 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 283 (434)
..++++..+|.|++||..+++.+..++++...++.+.|..+ + .+.+|+.||+|++||+|..... .......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~----a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES----ARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh----hheeccCCC
Confidence 56888889999999999999999999999999999999864 3 8999999999999999932222 222233333
Q ss_pred -cCeEEEEEecCCCEEEEEcC----CCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEe
Q 046226 284 -SPVKTLTLTLDDGLLYGGCT----DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWA 355 (434)
Q Consensus 284 -~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd 355 (434)
.+..+++..-.++.+++|++ +-.|.+||++..... +..-...|...|+++.|. ++.|++|+.||.|.|||
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 46667777667788888865 678999999865543 223456899999999996 56999999999999999
Q ss_pred ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
++.......+...-.|...|.++.|..+. .+.|.+-+.+++..+|+++.+..
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~--------ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKK--------YKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCC--------cceEEEEEccCceeEEEccCCCh
Confidence 98765445555555678889999999774 56799999999999999998874
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=9.2e-20 Score=166.64 Aligned_cols=247 Identities=17% Similarity=0.281 Sum_probs=194.2
Q ss_pred eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226 123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI 200 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 200 (434)
+.+..+.+|-..|+|+.|... ++++++.|..++||...+..+.... .+|.+.|+.+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~----------------------rGhs~ditdl 238 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC----------------------RGHSGDITDL 238 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC----------------------CCCccccchh
Confidence 344567789999999999875 8999999999999998776655554 3899999999
Q ss_pred EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226 201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT 280 (434)
Q Consensus 201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 280 (434)
+.+.++.++++++.|..|++|-+.++.++..+.+|++.|++++|+|-. +.+.||++++||.+........... ..
T Consensus 239 avs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~--~~ 313 (1113)
T KOG0644|consen 239 AVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPL--KF 313 (1113)
T ss_pred ccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCC--Cc
Confidence 999999999999999999999999999999999999999999999864 7889999999998711111110000 11
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEecc
Q 046226 281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWARE 357 (434)
Q Consensus 281 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~ 357 (434)
.....+.++.+...+..+++++.|+.-..|.+... ..+...+.-+... ..+.+++-.+..+++|++.
T Consensus 314 ~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 314 TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL----------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred ccccceeeeeccccccccccccCCcccccchhhHh----------hhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 12245677888888899999999999888865311 1222222222222 2467777788999999999
Q ss_pred CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
++ ..+..+.+|...+..+.++|-+ .....+++.||...|||+-.+.+..
T Consensus 384 ~g---~l~H~l~ghsd~~yvLd~Hpfn--------~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 384 TG---QLLHNLMGHSDEVYVLDVHPFN--------PRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred cc---hhhhhhcccccceeeeeecCCC--------cHhhhhccCCCceEeeecccCCcce
Confidence 98 7888889999999999999975 6678899999999999999887654
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=145.00 Aligned_cols=259 Identities=17% Similarity=0.158 Sum_probs=180.7
Q ss_pred eccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEE-e---------CCEEEEEEcCCeEEEee
Q 046226 90 KKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV-S---------HDRVYAAYGDGKIRVWR 158 (434)
Q Consensus 90 ~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~-~---------~~~l~~~s~dg~i~vwd 158 (434)
.|...|.|+.| ...-++..++|..+.+|.-.+......++.....|....+ - .+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 36677778888 5555555566666666654443333333322222221111 1 13688999999999886
Q ss_pred cCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC
Q 046226 159 STWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 238 (434)
-. +...+.+ ..|.+.+.+-.|+|||.-|+++++||.|++|. ++|-...++.....+
T Consensus 92 k~-~rVE~sv----------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 92 KS-ARVERSI----------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred cc-chhhhhh----------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence 32 1111111 26999999999999999999999999999998 466666666667789
Q ss_pred eEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226 239 INALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS 316 (434)
Q Consensus 239 v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 316 (434)
|+|++|.|+. .+++.+ +.+.+=-+. ....+.....|.+-|.++.|++..+++++|++|-..++||-.
T Consensus 148 v~c~~W~p~S~~vl~c~g--~h~~IKpL~------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--- 216 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQG--GHISIKPLA------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--- 216 (737)
T ss_pred eEEEEECCCCCceEEecC--CeEEEeecc------cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc---
Confidence 9999999998 444444 344443333 344556788999999999999999999999999999999952
Q ss_pred ccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226 317 AQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI 396 (434)
Q Consensus 317 ~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 396 (434)
......-..|..+|++++|+++.++..+.-+++|+ -....+.|..++|++| |..+
T Consensus 217 --G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~--------------~~p~~GSifnlsWS~D---------GTQ~ 271 (737)
T KOG1524|consen 217 --GANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF--------------SSPRVGSIFNLSWSAD---------GTQA 271 (737)
T ss_pred --CcccccCChhccceeeeeeccccceeeeeeeeeee--------------cCCCccceEEEEEcCC---------Ccee
Confidence 22223455788999999999764433333334441 1245678999999999 9999
Q ss_pred EEeecCCeEEEE
Q 046226 397 CTGSLDGVLKMW 408 (434)
Q Consensus 397 ~s~~~Dg~v~iw 408 (434)
+.|...|.|.+=
T Consensus 272 a~gt~~G~v~~A 283 (737)
T KOG1524|consen 272 TCGTSTGQLIVA 283 (737)
T ss_pred eccccCceEEEe
Confidence 999999987663
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=9.4e-18 Score=133.79 Aligned_cols=295 Identities=13% Similarity=0.117 Sum_probs=197.1
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeee-----EEEe-eccccEEEEEE-cCCEEEEEeCCCeEEEe
Q 046226 45 PRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCI-----SSVL-KKDGQILCIAV-GNGFIYTGSDSNVIRIW 117 (434)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~h~~~v~~~~~-~~~~l~tg~~dg~i~iw 117 (434)
|...-.++.|.+.+++..+.-+.+ +.++...+.+..|... ..+. .|...|+.+.. .++.|.+-+.|+.+.+|
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEE
Confidence 344445668888888888876665 6666667776666553 2344 46778888888 77899999999999999
Q ss_pred cCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCC-eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCC
Q 046226 118 KQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDG-KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGP 196 (434)
Q Consensus 118 d~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (434)
++.-...+. .|.-.++++.|.+--+...+... ..-.++-+....... ..+..........+...+..+.
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~-------~D~g~~tqv~i~dd~~~~Klgs 152 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHK-------QDGGDTTQVQIADDSERSKLGS 152 (323)
T ss_pred EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhh-------hccCccceeEccCchhccccCc
Confidence 987644332 35556677777665444433322 222222211111000 0011111111122222345667
Q ss_pred eEEEEEec-CCC--EEEEEecCCcEEEEEcCCCe----------eEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEE
Q 046226 197 ITSIAINV-SDD--TLYSASLDKTIKVWRIRDSK----------CIETIQAHSEPINALVVADDG-VLYSASDDATVRVW 262 (434)
Q Consensus 197 v~~~~~~~-~~~--~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iw 262 (434)
+.|..+.. ++. ++++|.++|.+.+||+.++. .+.....|..+|.++.+.+.. .=++|+.+..+..|
T Consensus 153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~ 232 (323)
T KOG0322|consen 153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY 232 (323)
T ss_pred eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence 77777533 233 46688899999999999873 344445689999999998655 66788888899999
Q ss_pred ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--
Q 046226 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-- 340 (434)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 340 (434)
++....+.... .......+..+..+.+-||++.+++++.|+.|+||..++. .....+.-|...|.+++|+++
T Consensus 233 Sl~~s~gslq~--~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 233 SLNHSTGSLQI--RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred eeccccCcccc--cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCc
Confidence 98733222222 2223334467888999999999999999999999997644 334566789999999999854
Q ss_pred EEEEecCCCcEEEEec
Q 046226 341 YVISGSADSTSRVWAR 356 (434)
Q Consensus 341 ~l~s~~~dg~i~iwd~ 356 (434)
.+++++.|++|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 8999999999999986
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.1e-16 Score=124.75 Aligned_cols=240 Identities=15% Similarity=0.169 Sum_probs=169.2
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226 135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA 212 (434)
Q Consensus 135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 212 (434)
|..-+++|. ++++|..+|.|.+..+..-...... ++....+. ..++|.++|..++|+ ..+|++|
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-----~~gk~~iv-------~eqahdgpiy~~~f~--d~~Lls~ 78 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-----PPGKLKIV-------PEQAHDGPIYYLAFH--DDFLLSG 78 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-----CCCCccee-------eccccCCCeeeeeee--hhheeec
Confidence 444566665 7889999999999988643211110 01111111 124799999999998 5678887
Q ss_pred ecCCcEEEEEcCCCee------EEEcc--cC-----ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226 213 SLDKTIKVWRIRDSKC------IETIQ--AH-----SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT 278 (434)
Q Consensus 213 ~~dg~i~vwd~~~~~~------~~~~~--~~-----~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 278 (434)
+ ||.|+-|..+.... +...+ -| -..|+++...|.. -++.++.|+.++.||+. ..++...
T Consensus 79 g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE------~G~i~r~ 151 (325)
T KOG0649|consen 79 G-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE------DGRIQRE 151 (325)
T ss_pred c-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec------CCEEEEE
Confidence 7 69999997654221 11111 12 2368889888776 66667799999999998 6778889
Q ss_pred ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc-----cCcccCcc-cceEEEEeeCCEEEEecCCCcEE
Q 046226 279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY-----GGALQGHT-HAVMCLASVANYVISGSADSTSR 352 (434)
Q Consensus 279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~-~~v~~~~~~~~~l~s~~~dg~i~ 352 (434)
+++|.+.+.++.--.....+++|++||++++||.++.+..... ...+..|. ..|.+++.+.+++++|+ .-.+.
T Consensus 152 ~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~ls 230 (325)
T KOG0649|consen 152 YRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLS 230 (325)
T ss_pred EcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCcee
Confidence 9999999999998666677999999999999999876543221 12233333 46889999999999887 45799
Q ss_pred EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+|+++.. ++...+. -..++..+.|..+ .++++|....|.-|.+.
T Consensus 231 lwhLrss---e~t~vfp-ipa~v~~v~F~~d-----------~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 231 LWHLRSS---ESTCVFP-IPARVHLVDFVDD-----------CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred EEeccCC---CceEEEe-cccceeEeeeecc-----------eEEEeccccceeeeeec
Confidence 9999987 4444332 2455677778754 78888888888888876
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1e-16 Score=136.35 Aligned_cols=201 Identities=18% Similarity=0.202 Sum_probs=147.9
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEE
Q 046226 198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLI 276 (434)
Q Consensus 198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 276 (434)
.+++|+.+|..+++|+.||++++|+......+.....|...|.++.|+||+ +|++.+.| ..+||+......-...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~--- 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK--- 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc---
Confidence 789999999999999999999999988888888888899999999999999 99999999 8999998732111100
Q ss_pred EEecccccCeEEEEEecCC---C--EEEEEcCCCeEEEEEcCccccc--ccccCcccCcccceEEEEe--eCCEEEEecC
Q 046226 277 LTLTAKYSPVKTLTLTLDD---G--LLYGGCTDGYIHYWHKGWFSAQ--LQYGGALQGHTHAVMCLAS--VANYVISGSA 347 (434)
Q Consensus 277 ~~~~~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 347 (434)
+-.........+.|+.++ . .++.....+.|+.||+...... ....+.... ...|.+|+. +|++++.|+.
T Consensus 224 -t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 -TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred -CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEecc
Confidence 001223345567777665 2 2333344667888776544332 111112222 235677766 5889999999
Q ss_pred CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 348 DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 348 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
||.|-|++..+-. .....-+.|...|+.+.|+|+ .+++++.+.|....+..+.-.+.
T Consensus 302 dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pd---------sr~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPD---------SRYLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred CCcEEEEEeceee--eeEeehhhheeeeeeEEEcCC---------cCcccccccCCceeEEEEeeccc
Confidence 9999999998762 222344689999999999999 88999999999999998876443
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=8.8e-17 Score=151.07 Aligned_cols=245 Identities=18% Similarity=0.302 Sum_probs=170.1
Q ss_pred cccEEEEEE----cCCEEEEEeCCCeEEEecC-CC----ceeEeeccC---C----CccEEEEEEeC--CEEEEEEcCCe
Q 046226 92 DGQILCIAV----GNGFIYTGSDSNVIRIWKQ-PE----FTECGRLKA---K----TSMVVAMEVSH--DRVYAAYGDGK 153 (434)
Q Consensus 92 ~~~v~~~~~----~~~~l~tg~~dg~i~iwd~-~~----~~~~~~~~~---~----~~~v~~l~~~~--~~l~~~s~dg~ 153 (434)
...|+.+.+ |..+|++|+.||.||||+- .+ .+.+..+.+ + .+.=.-+.|.. ..|++++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 346899998 5679999999999999963 22 233332221 1 11112344544 37777777899
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEEcCCCe---eE
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWRIRDSK---CI 229 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~---~~ 229 (434)
|+|||......+..+.. +...-|+++.-+. .|+.+++|..||.|++||.+... .+
T Consensus 1189 IRIWDa~~E~~~~diP~---------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPY---------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred EEEEecccceeEeeccc---------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 99999986655554432 3444566665443 47999999999999999987543 56
Q ss_pred EEcccCccC--eEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226 230 ETIQAHSEP--INALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 230 ~~~~~~~~~--v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
...+.|... |..+.+.+.| .|++|+.||.|++||++.............. ...+..+++..+++...+++|+. +
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-~yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-EYGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc-ccCccceeeeeccCCCeeeecCc-c
Confidence 777888877 9999999888 7999999999999999943222111111111 11235899999999999999998 9
Q ss_pred eEEEEEcCccccccc-cc-CcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCC
Q 046226 306 YIHYWHKGWFSAQLQ-YG-GALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQD 359 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~-~~-~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~ 359 (434)
.|+||++........ +. ..+....+.+.|++|++. ++++|+.|.+|.||.....
T Consensus 1326 ~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999864432211 11 112223456799999876 7889999999999987764
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=8.4e-17 Score=135.39 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=178.5
Q ss_pred eccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc---eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226 127 RLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV---KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201 (434)
Q Consensus 127 ~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 201 (434)
.+.+|.+.|+++.|+.+ .|++|+.|..+++|.+...-.. +.+.+.. ..|...|.|++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~------------------~~H~SNIF~L~ 112 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVME------------------HPHRSNIFSLE 112 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceecc------------------CccccceEEEE
Confidence 45679999999999987 8899999999999997642111 1111111 13778999999
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEE
Q 046226 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILT 278 (434)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 278 (434)
|...+..+++|..+++|.+.|+++.+.+..+.. ..+.|+.+..+|.. .|++.+.++.|.+||.+... .......
T Consensus 113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~---~~~~~~~ 189 (609)
T KOG4227|consen 113 FDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ---NPISLVL 189 (609)
T ss_pred EccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC---CCCceee
Confidence 999999999999999999999999988887753 23589999999977 99999999999999998222 1222223
Q ss_pred ecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcCcccccccccCcccCccc---ceEEEEe--eCCEEEEecCCCcEE
Q 046226 279 LTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH---AVMCLAS--VANYVISGSADSTSR 352 (434)
Q Consensus 279 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~--~~~~l~s~~~dg~i~ 352 (434)
..........+.|+|. -.+|++.+..+-+-+||.+...........+.+-.. .-....| +|+.|++--....-.
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 3334456788899995 457888888999999999865544322222222111 1133344 477777766666667
Q ss_pred EEeccCCCceeeEEEeec------cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 353 VWAREQDGRHTMLAVLVG------HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 353 iwd~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
+||+.+.. ..+..+.. ....+.+++|..+ ..+++|+.+=.|+||.+...
T Consensus 270 ~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D----------~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 270 YFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDD----------YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred Eeeeeccc--ceeEeccCCCCcceeeeeeeeeeeecc----------eeeeccCcccceEEEecCCC
Confidence 78887641 12222221 1235667888766 34999999999999999754
No 199
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=3.5e-18 Score=146.54 Aligned_cols=268 Identities=12% Similarity=0.150 Sum_probs=205.9
Q ss_pred EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226 95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLA 171 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 171 (434)
-+.+.+ +|..|+.|+.-|.|-.+|..++++...+... ..|.++.|-.+ .++++.....+.|||-. +..+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHCl--- 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCL--- 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeeh---
Confidence 456777 8999999999999999999999998888754 45888888665 67777778889999843 2222222
Q ss_pred eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE
Q 046226 172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL 250 (434)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 250 (434)
.....|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+ .+
T Consensus 207 --------------------k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 207 --------------------KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVI 266 (545)
T ss_pred --------------------hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceE
Confidence 255678899999999999999999999999999999999999889999999999988 89
Q ss_pred EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226 251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH 330 (434)
Q Consensus 251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 330 (434)
-+|...|+|.+|... ...++..+..|.++|.+|++.++|+++++.+.|..++|||++.......+.. ..
T Consensus 267 h~GhsnGtVSlWSP~------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-----p~ 335 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPN------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-----PH 335 (545)
T ss_pred EEcCCCceEEecCCC------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-----CC
Confidence 999999999999765 5566667788999999999999999999999999999999987664333211 23
Q ss_pred ceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc--ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 331 AVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH--RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 331 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
....++++.+-+++.+....|.||.-........-..+-.| .++|..+.|.|- ..+|-.|-..|.-.|
T Consensus 336 ~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~---------EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 336 PASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY---------EDVLGIGHAGGITSI 405 (545)
T ss_pred CccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH---------HHeeeccccCCceeE
Confidence 45677888776777777778999953322111111112222 348889999886 555655555554333
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.5e-15 Score=140.46 Aligned_cols=289 Identities=15% Similarity=0.212 Sum_probs=203.8
Q ss_pred eccccEEEEEE--cCCEEEEEeCCCeEEEecCCC----ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCC
Q 046226 90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE----FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~ 161 (434)
.|.-.++|.++ .++++|+|..||.|.+|.-.. ......+.=|...|.+++|+++ +|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 46666888888 899999999999999996322 1223445568889999999998 999999999999999987
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-------
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA------- 234 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~------- 234 (434)
++. +.+ ..-.++|..+.++||+.+.+....|+.|.+....+.....++.+
T Consensus 283 ~~k-qfL----------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~ 339 (792)
T KOG1963|consen 283 GKK-QFL----------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS 339 (792)
T ss_pred CCc-ccc----------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence 762 111 13677899999999999999999999999998766544333332
Q ss_pred ----CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEec-------ccccCeEEEEEecCCCEEEEEc
Q 046226 235 ----HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLT-------AKYSPVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 235 ----~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~ 302 (434)
..+-.+.++++|.. .++-.+..|.|.+||+..... ..+...... .+...++.++.+..|.++++.-
T Consensus 340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~--i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST--IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred ccccccccceeEEEcCCCCceeecCCCceEEEEeccccce--eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEee
Confidence 23456778888844 888889999999999873222 222111111 1223566777777888888863
Q ss_pred C--------C--CeEEEEEcCcccccccccC-cccCcccceEEEEee----CCEEEEecCCCcEEEEeccCC-------C
Q 046226 303 T--------D--GYIHYWHKGWFSAQLQYGG-ALQGHTHAVMCLASV----ANYVISGSADSTSRVWAREQD-------G 360 (434)
Q Consensus 303 ~--------d--g~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~-------~ 360 (434)
. | -.+++|-.........+.. ....|...+.+..+. ...+++++.||.++||-+... .
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence 2 3 3577887655444443322 233566555444432 338999999999999988332 2
Q ss_pred ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 361 RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 361 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
.+.|...-.-|..++++++|+.| |. +++.+.|++|.+||..+.
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~d---------Gs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQD---------GS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ceEEeeeeccccCcccchhhcCC---------Cc-EEEEecCCEEEEecCCCh
Confidence 33444433347889999999988 64 666778999999999884
No 201
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=1.5e-16 Score=134.42 Aligned_cols=271 Identities=14% Similarity=0.153 Sum_probs=188.5
Q ss_pred CCCCCCCCCCC-ccCCCCCCCcccceeee--------------EEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCC
Q 046226 58 LSSPRHPFNPT-AAAGSSSPETSSSYRCI--------------SSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQP 120 (434)
Q Consensus 58 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~ 120 (434)
+++.-+..+.. .+++++.|..++.|... ..|-.|..+|+++.| +|++||+|+++|.|.+|...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 33433333333 78888888888877763 446779999999999 88999999999999999654
Q ss_pred --------C--------ceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeE
Q 046226 121 --------E--------FTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRN 182 (434)
Q Consensus 121 --------~--------~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
+ ......+.+|...|+.++|+++ .+++++.|..+++||+..+.......
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~------------- 162 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD------------- 162 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-------------
Confidence 2 3344566789999999999998 88899999999999998876655553
Q ss_pred EEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc----------c---------Cc----cCe
Q 046226 183 LIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ----------A---------HS----EPI 239 (434)
Q Consensus 183 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~----------~---------~~----~~v 239 (434)
+|...|..++|.|-++++++-+.|...+.+.+...+.+.... . |. ...
T Consensus 163 ---------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 163 ---------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred ---------ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 699999999999999999999989877777765443322211 0 11 134
Q ss_pred EEEEEcCCC-eEEEEeC----CCe-----EEEEecccccCcceeEEEEEecccccCeEEEEEec----------------
Q 046226 240 NALVVADDG-VLYSASD----DAT-----VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL---------------- 293 (434)
Q Consensus 240 ~~~~~~~~~-~l~s~~~----dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------------- 293 (434)
..++|+|+| ++++... .+. .++|+. .....+...+.....++..+.++|
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr-----k~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~ 308 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR-----KDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFV 308 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeecc-----ccccCceeecCCCCcceEEEEeeeeEEEeccccccccccc
Confidence 567788999 6665432 222 234432 233344444444444555555443
Q ss_pred --CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226 294 --DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 294 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 359 (434)
-+..++.++ ...|++||.+....... .-.-|-..++.++|+ |.+|+..+.||...+-.++..
T Consensus 309 lpyrlvfaiAt-~~svyvydtq~~~P~~~---v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 309 LPYRLVFAIAT-KNSVYVYDTQTLEPLAV---VDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred cccceEEEEee-cceEEEeccccccceEE---EeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 223455555 45799999754332222 334677899999996 569999999999888887765
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=4.2e-15 Score=124.42 Aligned_cols=232 Identities=17% Similarity=0.215 Sum_probs=173.9
Q ss_pred cccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCC--eEEEeecCCCCCcee
Q 046226 92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDG--KIRVWRSTWDNGVKH 167 (434)
Q Consensus 92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg--~i~vwd~~~~~~~~~ 167 (434)
...+..+.| +...|..|+.|| -++|+.+..............|.-+-|+...++.++.+. .+++.+++....+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 345667778 667788888887 567877765554444445567888889999888777754 488888877666655
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc---CccCeEEEEE
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA---HSEPINALVV 244 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~ 244 (434)
+. ...+|.++.++ .+.|+++-.+. |+|||+++.+.+.++.. +...+.++.+
T Consensus 84 ~~-----------------------fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~ 137 (391)
T KOG2110|consen 84 IF-----------------------FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP 137 (391)
T ss_pred Ee-----------------------cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc
Confidence 52 66789999986 55677776554 99999999999888764 4445777777
Q ss_pred cCCC-eEEEE--eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe-EEEEEcCccccccc
Q 046226 245 ADDG-VLYSA--SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY-IHYWHKGWFSAQLQ 320 (434)
Q Consensus 245 ~~~~-~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~ 320 (434)
++.+ +++-- ...|.|.+||+. ..+....+..|.+.+.+++|+++|.+||++++.|+ |++|.+..+....+
T Consensus 138 n~~n~ylAyp~s~t~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 138 NNANCYLAYPGSTTSGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCCCceEEecCCCCCceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 7666 66543 346899999987 45566777899999999999999999999999985 68999876665555
Q ss_pred ccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccC
Q 046226 321 YGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 321 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~ 358 (434)
+..-. -...|.+++|+ +.+|++.+..++|+||.++.
T Consensus 212 FRRG~--~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 212 FRRGT--YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeCCc--eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 43322 23567888886 56999999999999999875
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=3.5e-16 Score=128.37 Aligned_cols=210 Identities=13% Similarity=0.113 Sum_probs=171.7
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEeccccc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYS 268 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~ 268 (434)
-..+|+|.+|++|...++.+..+..|.||..... +..+++..|...|++++|+|.. .|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~--- 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP--- 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC---
Confidence 4578999999999999999999999999988654 4788899999999999999999 99999999999999764
Q ss_pred CcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEec
Q 046226 269 ENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGS 346 (434)
Q Consensus 269 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~ 346 (434)
..........+..++..++++.|+|.++.|++|+....|.||-++....-..-...-..+...|++++|..+ +|++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 345666777777888999999999999999999999999999886554433323334467788999999855 899999
Q ss_pred CCCcEEEEecc-----CCC----------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 347 ADSTSRVWARE-----QDG----------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 347 ~dg~i~iwd~~-----~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
.|+..|||..- ... -.+++.++....+.|..+.|+|. |..|+=.+.|+.|.+=|..
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s---------G~~lawv~Hds~v~~~da~ 236 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS---------GNRLAWVGHDSTVSFVDAA 236 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC---------CCEeeEecCCCceEEeecC
Confidence 99999999642 110 00223344455678999999999 9999999999999999987
Q ss_pred CCC
Q 046226 412 RPK 414 (434)
Q Consensus 412 ~~~ 414 (434)
.+.
T Consensus 237 ~p~ 239 (361)
T KOG1523|consen 237 GPS 239 (361)
T ss_pred CCc
Confidence 664
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=9.2e-15 Score=122.06 Aligned_cols=293 Identities=17% Similarity=0.183 Sum_probs=183.4
Q ss_pred cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC-CCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCcee
Q 046226 94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-KTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
.+.-++| .-..+|++..|.+|++||-.. +....++. ....|.+++|.|. .+++|+..| |.+|..........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 4566777 344678889999999999766 44444443 4567999999996 677777655 89998653321111
Q ss_pred -eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226 168 -VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAHSEPINALVVA 245 (434)
Q Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 245 (434)
..... .....+ + ...+| .+|++|+|.+||..+++++. |..|.|||..++..+.-.....+.+.-+.|+
T Consensus 178 ~~~~~s--~~~~qv--l-----~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwS 247 (445)
T KOG2139|consen 178 NIRMMS--THHLQV--L-----QDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWS 247 (445)
T ss_pred cccccc--ccchhh--e-----eCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEc
Confidence 00000 000000 0 11134 78999999999999998865 5789999999988766554566788999999
Q ss_pred CCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccccc--
Q 046226 246 DDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYG-- 322 (434)
Q Consensus 246 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-- 322 (434)
||+ +|+++.-|+..++|+.. +......-. ...+.|...+|+|+|++|+..+. |.-++|.+..........
T Consensus 248 Pdgd~lfaAt~davfrlw~e~-----q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 248 PDGDVLFAATCDAVFRLWQEN-----QSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred CCCCEEEEecccceeeeehhc-----ccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCc
Confidence 999 99999999999999644 223222222 23348999999999998776553 333455443222111110
Q ss_pred ---------Ccc------cC---cccceEEEEee--CCEEEEecCCC--------cEEEEeccCCCceeeEEEeeccccc
Q 046226 323 ---------GAL------QG---HTHAVMCLASV--ANYVISGSADS--------TSRVWAREQDGRHTMLAVLVGHRGP 374 (434)
Q Consensus 323 ---------~~~------~~---~~~~v~~~~~~--~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~ 374 (434)
..+ .+ -.+.+.+++|+ |++|++.-..+ .|.+||.+..........-......
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~ 400 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY 400 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence 000 01 12355677775 77888765443 4777887765322222110011112
Q ss_pred eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 375 IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 375 v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
...+.|.|.. .++.+|..+=..|.+.-|++.
T Consensus 401 P~~IsF~pl~------n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 401 PAYISFGPLK------NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CceEEeeecc------cCCcEEEEEeccCceEeeeeE
Confidence 4457777652 347788888888888888765
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.1e-17 Score=140.82 Aligned_cols=169 Identities=18% Similarity=0.269 Sum_probs=131.1
Q ss_pred eEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226 124 ECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201 (434)
Q Consensus 124 ~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 201 (434)
+...+.+|++.|+++.|+.+ .|++|+.|-.+.|||.-..+....+. .+|...|.++.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------------------TgHtaNIFsvK 100 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------------------TGHTANIFSVK 100 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------------------cccccceeEEe
Confidence 34568899999999999987 89999999999999987555544443 27999999999
Q ss_pred EecC--CCEEEEEecCCcEEEEEcCC----------CeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccc
Q 046226 202 INVS--DDTLYSASLDKTIKVWRIRD----------SKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFY 267 (434)
Q Consensus 202 ~~~~--~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~ 267 (434)
|-|. +..+++|..|..|+++|+.. ......+..|...|..|+..|++ .+.++++||+|+-+|++..
T Consensus 101 FvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 101 FVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred eeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9984 67889999999999999974 23455566789999999999998 8999999999999999832
Q ss_pred cCccee----EEEEEecccccCeEEEEEecC-CCEEEEEcCCCeEEEEEcC
Q 046226 268 SENQLH----TLILTLTAKYSPVKTLTLTLD-DGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 268 ~~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~ 313 (434)
..-... .....+...--...++.++|. ..+|++|+.|-..++||.+
T Consensus 181 h~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 181 HVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 211111 111111122235678899995 5689999999999999964
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.5e-16 Score=133.97 Aligned_cols=193 Identities=19% Similarity=0.198 Sum_probs=147.3
Q ss_pred EEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226 96 LCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLA 171 (434)
Q Consensus 96 ~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 171 (434)
.+++| +|..|++|+.||++|||+.++...+.....|.+.|.++.|+|| .|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~- 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP- 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC-
Confidence 66777 8899999999999999999998888888899999999999998 78888888 899999988744433310
Q ss_pred eccCCCCceeEEEeccccccCcCCCeEEEEEecCC---CE--EEEEecCCcEEEEEcCCCee-----EEEcccCccCeEE
Q 046226 172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD---DT--LYSASLDKTIKVWRIRDSKC-----IETIQAHSEPINA 241 (434)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~--l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~ 241 (434)
.+.......+.|+.|+ .+ ++....-+.|+.||+...+- ..+.......|.+
T Consensus 226 -------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 226 -------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS 286 (398)
T ss_pred -------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee
Confidence 0233345566676665 22 22333445677777643221 1111123457999
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
++++++| +++.|+.||.|.|++.. ...........|..-|+.+.|+|+.+++++.+.|..+.+..+..
T Consensus 287 l~VS~dGkf~AlGT~dGsVai~~~~-----~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 287 LAVSDDGKFLALGTMDGSVAIYDAK-----SLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEcCCCcEEEEeccCCcEEEEEec-----eeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999 99999999999999976 45556667778999999999999999999999999999887643
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=3e-15 Score=143.03 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=175.9
Q ss_pred ecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccC
Q 046226 117 WKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMK 192 (434)
Q Consensus 117 wd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (434)
|+. .|..+..+..|...|..++.+++ ++++|+.||+|++|+...-..- ...+ ..+ ++..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~r-----------S~l-----tys~ 1096 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSAR-----------SEL-----TYSP 1096 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceee-----------eeE-----EEec
Confidence 553 57888999999999999998875 8999999999999998643221 1110 000 1112
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-------eeEEEcccC-ccCeEEE-EEcC--CC-eEEEEeCCCeEE
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-------KCIETIQAH-SEPINAL-VVAD--DG-VLYSASDDATVR 260 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~-~~~v~~~-~~~~--~~-~l~s~~~dg~i~ 260 (434)
....+.++...+.++.+|+++.||.|.+.+++.. .+....+.+ .+.+.++ ++.. .. .++.+..-+.|.
T Consensus 1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 5678899999999999999999999999998752 122222222 2333333 3322 22 788888889999
Q ss_pred EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-- 338 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 338 (434)
.||++...... ........+.|++++.+|.+++++.|+..|.+.+||++-......... ++..++..+..+
T Consensus 1177 ~~D~r~~~~~w----~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~---P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1177 SWDTRMRHDAW----RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH---PARAPIRHVWLCPT 1249 (1431)
T ss_pred EecchhhhhHH----hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccC---cccCCcceEEeecc
Confidence 99998332221 222334557899999999999999999999999999986655444322 233455554443
Q ss_pred -C--CEEEEec--CCCcEEEEeccCCCceeeEEEeecc-ccceeE--EEE----eecccCC---CCCCcccEEEEeecCC
Q 046226 339 -A--NYVISGS--ADSTSRVWAREQDGRHTMLAVLVGH-RGPIRC--AIA----FLGRFGE---ETEDEYCTICTGSLDG 403 (434)
Q Consensus 339 -~--~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~--~~~----~~~~~~~---~~~~~~~~l~s~~~Dg 403 (434)
+ ...++++ ..+.|.+|++.++. +-..+-.. ..+... +.. .|+.... .....+.++.+|+.|+
T Consensus 1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~---~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGL---RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred CCCCceEEEecccCCCceeeeecccCc---ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence 3 3444443 57899999999883 22222221 100000 000 0110000 0112267899999999
Q ss_pred eEEEEecCCCCcc
Q 046226 404 VLKMWRVTRPKSS 416 (434)
Q Consensus 404 ~v~iw~~~~~~~~ 416 (434)
.|+.||...++..
T Consensus 1327 kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEIS 1339 (1431)
T ss_pred ceeeccCCCcccc
Confidence 9999999887654
No 208
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.71 E-value=6.4e-14 Score=126.02 Aligned_cols=250 Identities=13% Similarity=0.163 Sum_probs=154.0
Q ss_pred eeEEEeeccccEEEEEE--cCCEEEEEe-CCCeEEEecCC-Ccee--EeeccCCCccEEEEEEeCC--EEEEEEc-CCeE
Q 046226 84 CISSVLKKDGQILCIAV--GNGFIYTGS-DSNVIRIWKQP-EFTE--CGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKI 154 (434)
Q Consensus 84 ~~~~~~~h~~~v~~~~~--~~~~l~tg~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i 154 (434)
++.++. +.+....+++ ++++|++++ .++.|.+|++. +++. +.... .......++++|+ .+++++. ++.|
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 344443 3355667777 788887764 57899999986 3332 23222 2334678999987 5666654 8999
Q ss_pred EEeecCCCCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCeeEE--
Q 046226 155 RVWRSTWDNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKCIE-- 230 (434)
Q Consensus 155 ~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~-- 230 (434)
.+|+++....... ... ..+.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 105 ~v~~~~~~g~~~~~~~~--------------------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQI--------------------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEEEECCCCCCCCceee--------------------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 9999864322211 100 01223467788999999887654 56899999997633221
Q ss_pred -----EcccCccCeEEEEEcCCC-eEEEEeC-CCeEEEEecccccCcceeEEEEEecc------cccCeEEEEEecCCCE
Q 046226 231 -----TIQAHSEPINALVVADDG-VLYSASD-DATVRVWRRYFYSENQLHTLILTLTA------KYSPVKTLTLTLDDGL 297 (434)
Q Consensus 231 -----~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~ 297 (434)
... .......+.|+|++ +++++.. ++.|.+||+..... .......... .......+.++|++++
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 111 23346789999999 6666655 89999999872111 1122222211 1122346889999999
Q ss_pred EEEEcC-CCeEEEEEcCcccccccccCcccCc-ccceEEEEeeCCEEEEecC-CCcEEEEeccC
Q 046226 298 LYGGCT-DGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASVANYVISGSA-DSTSRVWAREQ 358 (434)
Q Consensus 298 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~ 358 (434)
++++.. ++.|.+|++................ ...-..+..+|++|+++.. +++|.+|+++.
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 999864 7899999986543333222221111 1112344456888777665 89999998863
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=8.3e-15 Score=128.37 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=122.7
Q ss_pred EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEE
Q 046226 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWR 222 (434)
Q Consensus 144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd 222 (434)
.++++-.-|.|.+.|....+..+.+... ..-....|+|+.|-|.+ ..++++-.+|.+++||
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~------------------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~ 248 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEE------------------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYD 248 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhc------------------ccccccceEEEEEEeCCCceEEEEEecCceEEee
Confidence 6888888899998886542221111100 00144789999999854 5677778899999997
Q ss_pred cCC--------------Ce--------------eEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCccee
Q 046226 223 IRD--------------SK--------------CIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLH 273 (434)
Q Consensus 223 ~~~--------------~~--------------~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~ 273 (434)
.+- +. ++..+....+.|+.++|+||| +|++.+.||.+||||.. ..
T Consensus 249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd------t~ 322 (636)
T KOG2394|consen 249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD------TQ 322 (636)
T ss_pred ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeecc------HH
Confidence 631 00 111222234578899999999 99999999999999987 33
Q ss_pred EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226 274 TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA 339 (434)
Q Consensus 274 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 339 (434)
.+...+..-.+...|++|+|||++|++|++|.-|.||.+.. .+....-++|..+|..++|++
T Consensus 323 eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e----rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 323 ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE----RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc----ceEEEeccccccceeeEeecc
Confidence 34444455567899999999999999999999999999753 333445679999999999997
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2.9e-15 Score=126.26 Aligned_cols=260 Identities=13% Similarity=0.157 Sum_probs=186.3
Q ss_pred ccccEEEEEE--c--CCEEEEEeCCCeEEEecCCCceeEee------ccCCCccEEEEEEeCCEEEEEEcCCeEEEeecC
Q 046226 91 KDGQILCIAV--G--NGFIYTGSDSNVIRIWKQPEFTECGR------LKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRST 160 (434)
Q Consensus 91 h~~~v~~~~~--~--~~~l~tg~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~ 160 (434)
-...|..++| + .+.|...+.|..+..+.+........ .....+.|..++...+.|++|-.+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 4567888888 2 34555555777777777766554433 344577888999888899999999999999987
Q ss_pred CCCCc--eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-EEEEEecC--CcEEEEEcCCCeeEEEcccC
Q 046226 161 WDNGV--KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-TLYSASLD--KTIKVWRIRDSKCIETIQAH 235 (434)
Q Consensus 161 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d--g~i~vwd~~~~~~~~~~~~~ 235 (434)
.+..- ....+ .....+..|.-++... .+++|+.. ..+.+||++..+.+..-+.-
T Consensus 134 ~~d~hss~l~~l---------------------a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 134 SGDLHSSKLIKL---------------------ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred CCccccccceee---------------------ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 54321 11111 1223445555555444 45568888 88999999988666554432
Q ss_pred c---------cCeEEEEEcCC--C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC
Q 046226 236 S---------EPINALVVADD--G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT 303 (434)
Q Consensus 236 ~---------~~v~~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 303 (434)
. -.++++.|-+. . .|++++.-+.+++||.+ ....++..+.-.+.+++++...|+++++++|..
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~-----~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR-----HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred CCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc-----ccCcceeEeccccCcceeeeecCCCcEEEEecc
Confidence 1 24677888877 4 99999999999999987 455666777777889999999999999999999
Q ss_pred CCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226 304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381 (434)
Q Consensus 304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 381 (434)
-|.+..||++...... ..+.+-.+.|.++..++. ++++++-|..|||+|+.+. +++.... -...++++.+.
T Consensus 268 ~g~l~~FD~r~~kl~g---~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr---kll~kvY-vKs~lt~il~~ 340 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLG---CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR---KLLHKVY-VKSRLTFILLR 340 (412)
T ss_pred cchhheecccCceeec---cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc---hhhhhhh-hhccccEEEec
Confidence 9999999997554333 246677888999988866 9999999999999999985 3332211 12345566665
Q ss_pred ec
Q 046226 382 LG 383 (434)
Q Consensus 382 ~~ 383 (434)
++
T Consensus 341 ~~ 342 (412)
T KOG3881|consen 341 DD 342 (412)
T ss_pred CC
Confidence 44
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4e-15 Score=137.96 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=155.0
Q ss_pred CCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---CeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226 111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV 185 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
+..|.+||..... ...+..|...+....|+|+ .|+.++.+ ..|++||+.+++.....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------------- 244 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------------- 244 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------
Confidence 4689999986544 4556778888999999998 67666543 47999998765322111
Q ss_pred ccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEE--EEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCeEE
Q 046226 186 GKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKV--WRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDATVR 260 (434)
Q Consensus 186 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~ 260 (434)
...+....++|+|||+.|+.+. .+|.+.| ||+.+++ ...+..+...+....|+||+ .|+ ++..++...
T Consensus 245 ------~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~ 317 (429)
T PRK01742 245 ------SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQ 317 (429)
T ss_pred ------cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCce
Confidence 0112234689999999888764 5776554 5666655 34555566778899999999 555 444678889
Q ss_pred EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN 340 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 340 (434)
+|++...... .... .+.. ....|+|+|++|+..+.++ +.+||+........ ... +...-..++++|+
T Consensus 318 I~~~~~~~~~--~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l-t~~---~~~~~~~~sPdG~ 384 (429)
T PRK01742 318 VYRMSASGGG--ASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVL-SST---FLDESPSISPNGI 384 (429)
T ss_pred EEEEECCCCC--eEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEe-cCC---CCCCCceECCCCC
Confidence 9987622211 1111 2222 4578999999998887765 55689865433211 111 1112234566788
Q ss_pred EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 341 YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 341 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
+|+.++.++.+.+|++.... ......+.+|.+.+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCCC
Confidence 99999999988888864311 1567777788888899999874
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.1e-14 Score=125.83 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=195.4
Q ss_pred eccccEEEEEE--cCCE-EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCC
Q 046226 90 KKDGQILCIAV--GNGF-IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNG 164 (434)
Q Consensus 90 ~h~~~v~~~~~--~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~ 164 (434)
.|...-+.|.. ||+| +|||..--.|++||+.+..+...-......|.-.-.+.| .++.-..|..|.+..--. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 46677777777 7876 566777889999999876655443333344444444545 455556677776653210 0
Q ss_pred ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226 165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVV 244 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 244 (434)
-... .-...-.+++++.-..-|+.++....|+-++++.|..+..+....+.++++.+
T Consensus 127 hy~~-----------------------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~i 183 (703)
T KOG2321|consen 127 HYRT-----------------------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSI 183 (703)
T ss_pred eeee-----------------------ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeee
Confidence 0000 12233456666654444555555678999999999999999988899999999
Q ss_pred cCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEeccccc-----CeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226 245 ADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS-----PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ 318 (434)
Q Consensus 245 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 318 (434)
++.. +|++|+.+|.|-.||.+................+.+ .|+++.|+.+|-.+++|+.+|.|.|||++...+.
T Consensus 184 n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 184 NEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred cCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 9877 899999999999999883332222222223223333 4999999999999999999999999999876554
Q ss_pred ccccCcccCcccceEEEEee----CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 319 LQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 319 ~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
... -.+..-+|..+.|. ++.+++. +...++|||-.++ +....+.. ...+..+++.|+ +.
T Consensus 264 ~~k---dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G---k~~asiEp-t~~lND~C~~p~---------sG 326 (703)
T KOG2321|consen 264 LVK---DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG---KPMASIEP-TSDLNDFCFVPG---------SG 326 (703)
T ss_pred eec---ccCCccceeeecccccCCCceEEec-chHHhhhcccccC---Cceeeccc-cCCcCceeeecC---------Cc
Confidence 432 22344577888884 2355554 4678999999998 45555444 344899999999 88
Q ss_pred EEEEeecCCeEEEEecCCCC
Q 046226 395 TICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 395 ~l~s~~~Dg~v~iw~~~~~~ 414 (434)
+++++-.++.+..|=+..-.
T Consensus 327 m~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred eEEEecCCCcceeEEccccC
Confidence 99999999888887766543
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=132.10 Aligned_cols=277 Identities=14% Similarity=0.162 Sum_probs=194.4
Q ss_pred eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEE
Q 046226 123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSI 200 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 200 (434)
.....+..|.+.|..|.|+.. .|++++.|..|.+||.........+. .+|...|...
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------------------SGH~~NvfQa 191 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------------------SGHCNNVFQA 191 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------------------cccccchhhh
Confidence 344567789999999999874 89999999999999987765544442 2699899888
Q ss_pred EEecC--CCEEEEEecCCcEEEEEcCC-Cee--EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCccee
Q 046226 201 AINVS--DDTLYSASLDKTIKVWRIRD-SKC--IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLH 273 (434)
Q Consensus 201 ~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~--~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~ 273 (434)
.|.|. ...+++++.||.+++=.+.. +.+ ...+..|.++|..++.-|+. .|.+++.|+.+.-+|++.. ....
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~--~pa~ 269 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD--VPAE 269 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC--Cccc
Confidence 89884 56799999999999887643 322 34566799999999999988 8999999999999999822 2222
Q ss_pred EEEEEeccccc---CeEEEEEecCC-CEEEEEcCCCeEEEEEcCcccccccc---c-----CcccCcccceEEEEee--C
Q 046226 274 TLILTLTAKYS---PVKTLTLTLDD-GLLYGGCTDGYIHYWHKGWFSAQLQY---G-----GALQGHTHAVMCLASV--A 339 (434)
Q Consensus 274 ~~~~~~~~~~~---~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~-----~~~~~~~~~v~~~~~~--~ 339 (434)
... ....+.. ....++..|.. ..+++|+.|..+++||.+........ . .........|+|+.++ +
T Consensus 270 ~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~ 348 (559)
T KOG1334|consen 270 KFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG 348 (559)
T ss_pred eee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc
Confidence 222 3333333 56788999855 48999999999999998754332110 0 1111223468999997 4
Q ss_pred CEEEEecCCCcEEEEeccCCCc---------eeeE-EEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 340 NYVISGSADSTSRVWAREQDGR---------HTML-AVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 340 ~~l~s~~~dg~i~iwd~~~~~~---------~~~~-~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
.-|++.-.|-.|++++-.-+.. ...+ +.++||.. .|.++-|.--+ ..++++|+.-|.|.|
T Consensus 349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr--------sEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR--------SEYVVSGSDCGHIFI 420 (559)
T ss_pred cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc--------cceEEecCccceEEE
Confidence 4455555677899995432211 0222 33788865 47777775222 789999999999999
Q ss_pred EecCCCCccc------cccccccCceeEee
Q 046226 408 WRVTRPKSSC------GHLNKTNGHEYFEL 431 (434)
Q Consensus 408 w~~~~~~~~~------~~~~~~~g~~~~~~ 431 (434)
|+-.+++.+. .-++.++.|.+.++
T Consensus 421 W~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred EecchhHHHHHhhcccceEeccCCCCCCch
Confidence 9988776442 23556666666553
No 214
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1.7e-15 Score=132.57 Aligned_cols=203 Identities=12% Similarity=0.158 Sum_probs=158.4
Q ss_pred CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
.+.|+.++.||.+.|.+ ..++....+..|.+.|.+-.|+++ .|++++.||.|++|.-... .+.
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS------------ 139 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS------------ 139 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH------------
Confidence 45788889999999987 567777788999999999999998 8999999999999974311 111
Q ss_pred eeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCe
Q 046226 180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDAT 258 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~ 258 (434)
.+.....+|.|++|.|+.+.++-+. .+.+.|=-+.....+-.++.|.+-|.++.|++.. .+++|++|-.
T Consensus 140 ---------tl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 140 ---------TVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred ---------HHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 1114667899999999987766654 3567777777777778899999999999999988 9999999999
Q ss_pred EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226 259 VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV 338 (434)
Q Consensus 259 i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 338 (434)
.++||-. .........|+.+|++++|.|+ ..++.++.. ++++ -....+.|..++|+
T Consensus 210 fKvWD~~-------G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---------------~~p~~GSifnlsWS 265 (737)
T KOG1524|consen 210 FKIWDAQ-------GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---------------SSPRVGSIFNLSWS 265 (737)
T ss_pred EEeeccc-------CcccccCChhccceeeeeeccc-cceeeeeee-eeee---------------cCCCccceEEEEEc
Confidence 9999954 4556667788999999999999 666655532 2331 11345678888885
Q ss_pred --CCEEEEecCCCcEEE
Q 046226 339 --ANYVISGSADSTSRV 353 (434)
Q Consensus 339 --~~~l~s~~~dg~i~i 353 (434)
|..++.|+..|.+.+
T Consensus 266 ~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 266 ADGTQATCGTSTGQLIV 282 (737)
T ss_pred CCCceeeccccCceEEE
Confidence 778988888887655
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.65 E-value=6.2e-15 Score=129.14 Aligned_cols=185 Identities=13% Similarity=0.162 Sum_probs=131.3
Q ss_pred CCEEEEEeCCCeEEEecCCCceeEeecc----CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFTECGRLK----AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP 174 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~ 174 (434)
+--|+.|-.-|.|.+.|....+....+. -....|+|+.|-|. .++++-.+|.+.+||...............
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~- 263 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL- 263 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc-
Confidence 3346667777788877765422111111 13468999999885 777778899999998632211111110000
Q ss_pred CCCCceeEEE-------eccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226 175 KTGGAVRNLI-------VGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD 247 (434)
Q Consensus 175 ~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (434)
..+....... .+...+.--.+.|+..+|+|||++||+.+.||.++|+|..+.+.+..++.--+...|++|+||
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 1111111000 001112224558999999999999999999999999999999888888877889999999999
Q ss_pred C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226 248 G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL 293 (434)
Q Consensus 248 ~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 293 (434)
| +|++|++|.-|.||.+. ..+.+..-.+|...|..++|+|
T Consensus 344 GKyIvtGGEDDLVtVwSf~------erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFE------ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ccEEEecCCcceEEEEEec------cceEEEeccccccceeeEeecc
Confidence 9 99999999999999887 6778888899999999999997
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=4.7e-14 Score=117.12 Aligned_cols=263 Identities=15% Similarity=0.185 Sum_probs=170.9
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-----eEeeccCCC------------ccEEEEEEeCC----EEEE
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-----ECGRLKAKT------------SMVVAMEVSHD----RVYA 147 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~l~~~~~----~l~~ 147 (434)
..+-|.++.| .|++||||..+|.|.++.-.... ....++.|. ..|..+.|.++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 4566899999 89999999999999999643321 223344443 36788888764 6788
Q ss_pred EEcCCeEEEeecCCCCCce---------------eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226 148 AYGDGKIRVWRSTWDNGVK---------------HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA 212 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 212 (434)
.+.|.+|++|.+....... .+++....... ..............|.--|+++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~-~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHD-LEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccc-ceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 8899999999986543322 01111000000 0000111111223588889999999999999998
Q ss_pred ecCCcEEEEEcCCCe-e--EEEcccC-----ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcce----------
Q 046226 213 SLDKTIKVWRIRDSK-C--IETIQAH-----SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQL---------- 272 (434)
Q Consensus 213 ~~dg~i~vwd~~~~~-~--~~~~~~~-----~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~---------- 272 (434)
. |=.|.+|+++--. . +..++.+ ..-|++..|+|.. .++-.+..|+|++.|++...--..
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 7 7789999986432 1 2222222 3468889999977 788888999999999982111000
Q ss_pred eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc------------cce---EEEEe
Q 046226 273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT------------HAV---MCLAS 337 (434)
Q Consensus 273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~v---~~~~~ 337 (434)
......+.+.-..|..+.|+.+|+++++-+. -+|++||+.....+.... +-|. ..| .-++|
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~---~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETY---PVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEE---eehHhHHHHHHHHhhccchhheeEEEE
Confidence 0111112233356888999999999997653 579999997655444322 2221 122 34567
Q ss_pred eCC--EEEEecCCCcEEEEeccCC
Q 046226 338 VAN--YVISGSADSTSRVWAREQD 359 (434)
Q Consensus 338 ~~~--~l~s~~~dg~i~iwd~~~~ 359 (434)
+|+ ++++|+....+++|++..+
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred cCCcceEecccccceEEEecCCCC
Confidence 666 9999999999999996654
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=2.5e-12 Score=106.03 Aligned_cols=232 Identities=14% Similarity=0.205 Sum_probs=156.6
Q ss_pred EEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCC--ccEEEEEEeCCEEEEEEc-C------CeEEEeecCCCC
Q 046226 95 ILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT--SMVVAMEVSHDRVYAAYG-D------GKIRVWRSTWDN 163 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~l~~~s~-d------g~i~vwd~~~~~ 163 (434)
...++| |...+++|.++ -.+||+.+-.++....+.+. -.+.-+-|..++++..++ + ..|.|||=....
T Consensus 8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecC-ceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 445888 66677777655 58999987755544333332 234445566665554443 2 579999944333
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC-CCeeEEEcccC--ccCeE
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIR-DSKCIETIQAH--SEPIN 240 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~--~~~v~ 240 (434)
.+..+ ....+|.++.+.+ ..|++.- .+.|+||... ..+.++.+... ...+.
T Consensus 87 ~i~el-----------------------~f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC 140 (346)
T KOG2111|consen 87 CIIEL-----------------------SFNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLC 140 (346)
T ss_pred EEEEE-----------------------EeccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceE
Confidence 34333 3678899999974 4566666 6789999987 44555555432 22344
Q ss_pred EEEEcCCC-eEEE-EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCe-EEEEEcCcccc
Q 046226 241 ALVVADDG-VLYS-ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGY-IHYWHKGWFSA 317 (434)
Q Consensus 241 ~~~~~~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~ 317 (434)
+++-..+. .|+. |-.-|.|.|-|+...... ....+.+|...|.+++++.+|..+|+++..|+ |+|||..+...
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~ 216 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL 216 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE
Confidence 44333333 4444 445699999998721111 34567789999999999999999999999996 79999887666
Q ss_pred cccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCC
Q 046226 318 QLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~ 359 (434)
..++.. ......|.|++|++ .+|++.++.|+++||.++..
T Consensus 217 l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 217 LQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 555432 23345789999975 49999999999999998764
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=9.2e-13 Score=118.31 Aligned_cols=273 Identities=12% Similarity=0.041 Sum_probs=170.4
Q ss_pred CEE-EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 103 GFI-YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 103 ~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
+++ ++-..+|.|.|.|..+.+.+.++......-..+.+++| ++++++.||.|.++|+.+.+.+..++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---------- 75 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---------- 75 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----------
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe----------
Confidence 444 45567899999999999999999876554455778886 78888999999999999988777774
Q ss_pred eeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCeeEEEcccC-------ccCeEEEEEcCCC-eE
Q 046226 180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKCIETIQAH-------SEPINALVVADDG-VL 250 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~l 250 (434)
-......+++++||++++++. .++.+.++|.++.+.++.+... ...+..+..++.. .+
T Consensus 76 -------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 76 -------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp --------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred -------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 344568899999999998775 6899999999999998887643 3456778777777 44
Q ss_pred EE-EeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCCeEEEEEcCcccccccccCcccCc
Q 046226 251 YS-ASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 251 ~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
+. .-+.+.|.+.|.... ..................|+|++++++++ ..+..|.++|............-...|
T Consensus 143 Vv~lkd~~~I~vVdy~d~-----~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~ 217 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDP-----KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH 217 (369)
T ss_dssp EEEETTTTEEEEEETTTS-----SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE
T ss_pred EEEEccCCeEEEEEeccc-----cccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc
Confidence 44 445588888776521 11222222234567788999999987664 557789999987554332221111233
Q ss_pred ccceEEE-----------EeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEE
Q 046226 329 THAVMCL-----------ASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTIC 397 (434)
Q Consensus 329 ~~~v~~~-----------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~ 397 (434)
..++..+ .-.+...++.-....+.+||.... +.++.+....++ .-+..+|+ ++++.
T Consensus 218 ~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv~~I~~~G~g-lFi~thP~---------s~~vw 284 (369)
T PF02239_consen 218 PGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVVKTIPTQGGG-LFIKTHPD---------SRYVW 284 (369)
T ss_dssp ETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEEEEEE-SSSS---EE--TT----------SEEE
T ss_pred ccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEEEEEECCCCc-ceeecCCC---------CccEE
Confidence 3333332 222333322222345667777765 777777776666 67888998 88888
Q ss_pred Ee----ecCCeEEEEecCCCCcc
Q 046226 398 TG----SLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 398 s~----~~Dg~v~iw~~~~~~~~ 416 (434)
.. ...+.|.++|.++.+..
T Consensus 285 vd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 285 VDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp EE-TT-SSHT-EEEEECCGTEEE
T ss_pred eeccCCCCCceEEEEECcCccee
Confidence 87 55689999999987543
No 219
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.63 E-value=4.7e-14 Score=117.11 Aligned_cols=330 Identities=16% Similarity=0.161 Sum_probs=218.9
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCccCCCCCCCcccceeeeEEEe-------eccccEEEEEE--cCCEEEEEeCCCeE
Q 046226 44 PPRFSSPISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYRCISSVL-------KKDGQILCIAV--GNGFIYTGSDSNVI 114 (434)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~--~~~~l~tg~~dg~i 114 (434)
.|.+.+.+.++...++....-+...-+.+.+.+.+++.|......+ .-..+++++++ +...|++|-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 4556678889999999888888888899999999988887654432 12457888888 77899999999999
Q ss_pred EEecC----CCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226 115 RIWKQ----PEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD 188 (434)
Q Consensus 115 ~iwd~----~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
.-+.+ +....++....|...|..+-|+.. .+++.+.|..+.---.+.+..+.......
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~---------------- 156 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET---------------- 156 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----------------
Confidence 98854 345556667789999999999754 88888888877544444444443332211
Q ss_pred cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc--CCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI--RDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
...++.+.-. +.+.|...|.|.+..+ ..-..+.++.+|.+.+.++.|.+.. .|++|..|..+.+||+-
T Consensus 157 -------~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 157 -------PASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred -------cCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 1111112111 5556666676666554 3456788999999999999999887 99999999999999986
Q ss_pred cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc-ccc---------C------------
Q 046226 266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL-QYG---------G------------ 323 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~---------~------------ 323 (434)
........+.+|...|..+...+--+.+++++.||.|.+||++...... +.. +
T Consensus 228 -----g~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~ 302 (404)
T KOG1409|consen 228 -----GRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDR 302 (404)
T ss_pred -----CCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhh
Confidence 2334556777888999999888888899999999999999986432110 000 0
Q ss_pred ---cccCcc----cceEEEEeeCC--EEEEecCCCcEEEEeccCC----CceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226 324 ---ALQGHT----HAVMCLASVAN--YVISGSADSTSRVWAREQD----GRHTMLAVLVGHRGPIRCAIAFLGRFGEETE 390 (434)
Q Consensus 324 ---~~~~~~----~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 390 (434)
-+..|. +...|...+.+ ...+-+..-.+|+-|.-.. ....+++.+..-...|+.+.+..+
T Consensus 303 k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqet------- 375 (404)
T KOG1409|consen 303 KQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQET------- 375 (404)
T ss_pred hhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhh-------
Confidence 000111 11111111111 1222222333444332111 011334444333446788877766
Q ss_pred CcccEEEEeecCCeEEEEecCC
Q 046226 391 DEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 391 ~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
-.+|+|+|.|..|+|||+.+
T Consensus 376 --lglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 376 --LGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred --ccceeecCCceEEEEEechh
Confidence 56899999999999999874
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.6e-14 Score=129.86 Aligned_cols=211 Identities=14% Similarity=0.046 Sum_probs=137.7
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCe
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSK 227 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~ 227 (434)
+..|.+||...... ..+ ..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++
T Consensus 183 ~~~i~i~d~dg~~~-~~l----------------------t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIV----------------------NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred eEEEEEECCCCCCc-eEe----------------------ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc
Confidence 46899999764432 222 1477789999999999999887654 369999998875
Q ss_pred e--EEEcccCccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-
Q 046226 228 C--IETIQAHSEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC- 302 (434)
Q Consensus 228 ~--~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 302 (434)
. +..+.++ ...++|+||| .|+.+ ..+|.+.||.+..... . ...+..+...+....|+|||+.|+..+
T Consensus 240 ~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~-~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 240 RKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGG-T----PSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred eEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCC-C----eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 3 3333333 4468999999 66655 4688777765441111 1 223344556678899999999776554
Q ss_pred CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
.+|...||+++......... .+......++.+|++|+..+.++ +.+||+.++.. ..+ ...+ ......|+|
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l----~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-~~l--t~~~--~~~~~~~sP 381 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV----GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGST-EVL--SSTF--LDESPSISP 381 (429)
T ss_pred CCCCceEEEEECCCCCeEEe----cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCe-EEe--cCCC--CCCCceECC
Confidence 57888888875433222221 22221223455688888877765 55699987632 111 1122 234577888
Q ss_pred cccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 383 GRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 383 ~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+ |++|+.++.+|.+.+|.+.
T Consensus 382 d---------G~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 382 N---------GIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred C---------CCEEEEEEcCCCceEEEEE
Confidence 8 9999999999999988864
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.7e-12 Score=106.88 Aligned_cols=177 Identities=16% Similarity=0.202 Sum_probs=128.5
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccc
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKM 190 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
+.|.|||-...+++.++. ...+|.++.+.++++++.- .+.|.||....+ +.+..+....
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~------------------ 134 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRS------------------ 134 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeeccc------------------
Confidence 489999977777777765 4678999999999888776 567999988633 3333332111
Q ss_pred cCcCCCeEEEEEecCCCEEEE-EecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCCe-EEEEecc
Q 046226 191 MKHMGPITSIAINVSDDTLYS-ASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDAT-VRVWRRY 265 (434)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-i~iwd~~ 265 (434)
......+++-+.+..+|+. |-.-|.|.|-|+...+. -..+.+|...|.|++.+-+| ++++++..|+ |||||..
T Consensus 135 --NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 135 --NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred --CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 1222333333323334443 44568999999976654 46788999999999999999 9999999998 7999977
Q ss_pred cccCcceeEEEEEe--cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc
Q 046226 266 FYSENQLHTLILTL--TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS 316 (434)
Q Consensus 266 ~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 316 (434)
....+..+ ......|.+++|+|+..+|++++..|+|+||.++...
T Consensus 213 ------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 213 ------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 22222222 2334679999999999999999999999999987543
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=2.4e-15 Score=129.35 Aligned_cols=226 Identities=11% Similarity=0.146 Sum_probs=178.8
Q ss_pred ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226 133 SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY 210 (434)
Q Consensus 133 ~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 210 (434)
-.-+.+.+..+ .++.++..|.|..+|..+......+. -...|.++.|..+.++||
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-----------------------v~Etv~Dv~~LHneq~~A 186 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-----------------------VMETVRDVTFLHNEQFFA 186 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-----------------------hhhhhhhhhhhcchHHHH
Confidence 34466777766 89999999999999998877666553 456788999988888888
Q ss_pred EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEE
Q 046226 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTL 289 (434)
Q Consensus 211 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 289 (434)
++- ...++|||- .|..++.++.| ..|..+.|.|.. +|++++..|.++.-|+. ....+..+....+.+..+
T Consensus 187 VAQ-K~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS------~GklVa~~~t~~G~~~vm 257 (545)
T KOG1272|consen 187 VAQ-KKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVS------TGKLVASIRTGAGRTDVM 257 (545)
T ss_pred hhh-hceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeec------hhhhhHHHHccCCccchh
Confidence 876 678999995 57777877754 578899999999 88899999999999987 556666677777888899
Q ss_pred EEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEE
Q 046226 290 TLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAV 367 (434)
Q Consensus 290 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 367 (434)
+-+|-...+-+|...|+|.+|......... .+-.|.++|.+++++ |+|++|.+.|..++|||++.- ..+.+
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLv----KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t 330 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLV----KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHT 330 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHH----HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccce
Confidence 999988899999999999999865443333 345799999999986 789999999999999999986 33333
Q ss_pred eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226 368 LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 368 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~ 409 (434)
+.. .-+...+++|.. -++..|....|.||.
T Consensus 331 ~~t-p~~a~~ls~Sqk-----------glLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 331 YRT-PHPASNLSLSQK-----------GLLALSYGDHVQIWK 360 (545)
T ss_pred eec-CCCccccccccc-----------cceeeecCCeeeeeh
Confidence 333 345667888855 466666677899996
No 223
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.60 E-value=1e-13 Score=130.81 Aligned_cols=275 Identities=16% Similarity=0.174 Sum_probs=189.4
Q ss_pred ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCC-CccEE----EEEEeCCEEEEEEcCCeEEEeecCCCCCc
Q 046226 91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK-TSMVV----AMEVSHDRVYAAYGDGKIRVWRSTWDNGV 165 (434)
Q Consensus 91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~----~l~~~~~~l~~~s~dg~i~vwd~~~~~~~ 165 (434)
|-+++++..+-.++|+.|. .-.|.+||+..+..+..+... --.+. -+..-...++++..-+.+..=+.......
T Consensus 6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~ 84 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIE 84 (967)
T ss_pred ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhh
Confidence 4456667777347777665 457999999887766544321 11111 00011124555554443433222111000
Q ss_pred eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-CeEEE--
Q 046226 166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-PINAL-- 242 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~-- 242 (434)
.-...|....+..+...++.++.++.+.+||...+..+..+..... ...++
T Consensus 85 --------------------------~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~ 138 (967)
T KOG0974|consen 85 --------------------------RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLI 138 (967)
T ss_pred --------------------------hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEE
Confidence 1222233345556778899999999999999988776666653221 11222
Q ss_pred -EEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226 243 -VVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ 320 (434)
Q Consensus 243 -~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 320 (434)
-.+++. ++++|+.-+.|.+|+.. . .. ....+.+|++.|.++.++.||+++++.+.|..+++|++.+.+...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~--~---dn-~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~- 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPH--E---DN-KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG- 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEecc--c---cC-CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence 234445 89999999999999976 1 11 111678999999999999999999999999999999997654443
Q ss_pred ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEEEEe
Q 046226 321 YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTICTG 399 (434)
Q Consensus 321 ~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~ 399 (434)
...-+|...|+.+.+.++.+++++.|.+.++|+.+. ..+..+.+|.+ .|+.++..++ ...++|+
T Consensus 212 --~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~---------~~~~vT~ 276 (967)
T KOG0974|consen 212 --CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIG---------VIIKVTG 276 (967)
T ss_pred --cccccccceeEEEEeccceeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCC---------ceEEEee
Confidence 355599999999999988999999999999997664 45558888865 5888999888 7789999
Q ss_pred ecCCeEEEEecCCCC
Q 046226 400 SLDGVLKMWRVTRPK 414 (434)
Q Consensus 400 ~~Dg~v~iw~~~~~~ 414 (434)
+.||.+++|++....
T Consensus 277 g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 277 GNDSTLKLWDLNGRG 291 (967)
T ss_pred ccCcchhhhhhhccc
Confidence 999999999987543
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=6.7e-13 Score=112.22 Aligned_cols=213 Identities=11% Similarity=0.135 Sum_probs=159.1
Q ss_pred eeeEEEeeccccEEEEEEcCCEEEEEeCCCeEEEecCCCce----eEeeccCCCccEEEEEEeCC---EEEEEEcC--Ce
Q 046226 83 RCISSVLKKDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFT----ECGRLKAKTSMVVAMEVSHD---RVYAAYGD--GK 153 (434)
Q Consensus 83 ~~~~~~~~h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~---~l~~~s~d--g~ 153 (434)
..+.+.....++|..++..+..|++|-.+|.+.+|..+.+. .+..+..+ ..+..|.-++. .+++|+.. ..
T Consensus 96 ~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~ 174 (412)
T KOG3881|consen 96 DDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINE 174 (412)
T ss_pred ccccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccc
Confidence 34445556678888888877788888999999999887432 22333333 34555555543 56668887 89
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC--CCEEEEEecCCcEEEEEcCCC-eeEE
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS--DDTLYSASLDKTIKVWRIRDS-KCIE 230 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~-~~~~ 230 (434)
+.+||+...+.+...+ .+++..-.+ .-.-.++++.|.+. ...|++++.-+.+++||.+.+ +++.
T Consensus 175 lkiwdle~~~qiw~aK--NvpnD~L~L-----------rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 175 LKIWDLEQSKQIWSAK--NVPNDRLGL-----------RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred eeeeecccceeeeecc--CCCCccccc-----------eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 9999998774443332 111111000 12234678888887 889999999999999999866 5788
Q ss_pred EcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226 231 TIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY 309 (434)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 309 (434)
.+.-...+++++...|++ .+++|...|.+..||++ ........+.+..+.+++|..+|...++++++-|..|+|
T Consensus 242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r-----~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR-----GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred EeccccCcceeeeecCCCcEEEEecccchhheeccc-----CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 888788899999999999 99999999999999998 223333447788899999999999999999999999999
Q ss_pred EEcCc
Q 046226 310 WHKGW 314 (434)
Q Consensus 310 ~d~~~ 314 (434)
+|+.+
T Consensus 317 hD~kt 321 (412)
T KOG3881|consen 317 HDIKT 321 (412)
T ss_pred eeccc
Confidence 99875
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.7e-12 Score=118.83 Aligned_cols=232 Identities=11% Similarity=0.020 Sum_probs=145.6
Q ss_pred eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE---cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY---GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK 187 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
.|.+||...... ..+..+...+...+|+|| .|+..+ .+..|.+|++..++.....
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------------------- 239 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------------------- 239 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-------------------
Confidence 788999865443 334456678999999998 555443 2457889988655322111
Q ss_pred ccccCcCCCeEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CCeEEEE
Q 046226 188 DKMMKHMGPITSIAINVSDDTLYSA-SLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DATVRVW 262 (434)
Q Consensus 188 ~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~iw 262 (434)
...+.+....|+|||+.|+.. +.+| .|++||+++++... +..+...+....|+||+ .|+..+. ++...+|
T Consensus 240 ----~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 240 ----SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred ----CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 122334468999999988855 4444 59999998877544 33344567889999999 6655554 4555666
Q ss_pred ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA 339 (434)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 339 (434)
.+..... ... .+...........|+|+|++|+..+.+ ..|.+||+...... .+.. .+...-..++.+|
T Consensus 315 ~~d~~~g-~~~----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~---~~~~~~p~~SpDG 385 (429)
T PRK03629 315 KVNINGG-APQ----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD---TFLDETPSIAPNG 385 (429)
T ss_pred EEECCCC-CeE----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC---CCCCCCceECCCC
Confidence 4431111 111 112223345678899999998876543 35888888654322 1111 1111223456678
Q ss_pred CEEEEecCCCc---EEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 340 NYVISGSADST---SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 340 ~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
++|+..+.++. +.++++.. .....+.+|.+.+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcccCC
Confidence 88888887764 67777754 34456667888888888887
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=3.1e-12 Score=105.88 Aligned_cols=273 Identities=15% Similarity=0.180 Sum_probs=173.5
Q ss_pred EEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeec
Q 046226 97 CIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATI 173 (434)
Q Consensus 97 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~ 173 (434)
+++.+|+++|+.+.- .+.|-|.++.+..+.+.. -..|.-+.|..+ .|..+..|+.|.+|++...+....+.
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---- 88 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---- 88 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec----
Confidence 333499999999865 777888888766554433 345777888877 45556679999999998766555443
Q ss_pred cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE
Q 046226 174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY 251 (434)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 251 (434)
.....+.+++|+|||+.++ +...+-.|.+|.+.+.+... ++-.+..+..++|+++| +.+
T Consensus 89 ------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 89 ------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCA 149 (447)
T ss_pred ------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceee
Confidence 4667899999999996655 56668899999998876543 33344556788888888 333
Q ss_pred EEeC------------------------------------CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC
Q 046226 252 SASD------------------------------------DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD 295 (434)
Q Consensus 252 s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 295 (434)
.++. +..+.+||-- ....+. .....-.+..++|+|.+
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~------Leykv~-aYe~~lG~k~v~wsP~~ 222 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV------LEYKVY-AYERGLGLKFVEWSPCN 222 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch------hhheee-eeeeccceeEEEecccc
Confidence 3322 1223444321 000111 11122468889999999
Q ss_pred CEEEEEcCCCeEEEEEcCcccccccc------------------------------------------------------
Q 046226 296 GLLYGGCTDGYIHYWHKGWFSAQLQY------------------------------------------------------ 321 (434)
Q Consensus 296 ~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------------------------------ 321 (434)
++|++|+.|+.+++.+--+.+.-.++
T Consensus 223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP 302 (447)
T ss_pred ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence 99999999999998752110000000
Q ss_pred --------cCcccCcccceEEEEee--CCEEEEecC--CCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226 322 --------GGALQGHTHAVMCLASV--ANYVISGSA--DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET 389 (434)
Q Consensus 322 --------~~~~~~~~~~v~~~~~~--~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 389 (434)
..........+--++|+ ..++++-.+ -+.+-+||+++. .+...-....+|....|.|.
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~piraf~WdP~------ 372 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKHPIRAFEWDPG------ 372 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhccceeEEEeCCC------
Confidence 00001111223345565 346665543 257899999875 23333345678999999998
Q ss_pred CCcccEEEEeecCCeEEEEecCCCC
Q 046226 390 EDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 390 ~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
...|+.+.....+++|...-..
T Consensus 373 ---~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 373 ---RPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred ---CceEEEEcCCceEEEEcCCCce
Confidence 4556666666789999977543
No 227
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.54 E-value=4.8e-11 Score=109.53 Aligned_cols=271 Identities=11% Similarity=0.067 Sum_probs=170.8
Q ss_pred EEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
...++.+++++.+|.|..+|..+++.+.................+.+++++.++.+..+|..+++.......
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-------- 133 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL-------- 133 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc--------
Confidence 346888999999999999999999988776654433334455567889999999999999988776655431
Q ss_pred ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe-----EEEEEcCCCeEEEE
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-----NALVVADDGVLYSA 253 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~s~ 253 (434)
...+.+.-.. .+..++.++.+|.|+.||.++|+.+..+......+ .+.... ++.++.+
T Consensus 134 ---------------~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~ 196 (377)
T TIGR03300 134 ---------------SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVG 196 (377)
T ss_pred ---------------CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEE
Confidence 1111111111 24567777889999999999999888776433221 111222 3577788
Q ss_pred eCCCeEEEEecccccCcceeEEEEEec-ccc--cCeEEEEEec--CCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226 254 SDDATVRVWRRYFYSENQLHTLILTLT-AKY--SPVKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 254 ~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
..++.+..+|+.. +........... +.. .....+.-+| .+..+++++.+|.++.||..+.+...... ..
T Consensus 197 ~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~-- 270 (377)
T TIGR03300 197 FAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS-- 270 (377)
T ss_pred CCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--cC--
Confidence 8889999998762 222221111000 000 0000010011 35678888889999999987655443321 11
Q ss_pred ccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 329 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
........++.++.++.||.++.+|..++ +.+.....-.. ........ +..|++++.||.|++
T Consensus 271 --~~~~p~~~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i~-----------g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 271 --SYQGPAVDDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAVV-----------GGYLVVGDFEGYLHW 334 (377)
T ss_pred --CccCceEeCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEEE-----------CCEEEEEeCCCEEEE
Confidence 12334456888888899999999999887 33333211111 11222222 568899999999999
Q ss_pred EecCCCCcc
Q 046226 408 WRVTRPKSS 416 (434)
Q Consensus 408 w~~~~~~~~ 416 (434)
+|..+++.+
T Consensus 335 ~d~~tG~~~ 343 (377)
T TIGR03300 335 LSREDGSFV 343 (377)
T ss_pred EECCCCCEE
Confidence 999888765
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=8.1e-12 Score=116.25 Aligned_cols=231 Identities=12% Similarity=0.025 Sum_probs=141.4
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG 186 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
..|.+||... .....+..+...+.+.+|+|+ .|+.++. +..|.+||+..+......
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------------------ 244 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------------------ 244 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec------------------
Confidence 3689999854 444556667778999999998 6666653 346999998765432111
Q ss_pred cccccCcCCCeEEEEEecCCCEEE-EEecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCCe--E
Q 046226 187 KDKMMKHMGPITSIAINVSDDTLY-SASLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDAT--V 259 (434)
Q Consensus 187 ~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~--i 259 (434)
...+...+..|+|||+.|+ +.+.+| .|++||+.+++. ..+..+.......+|+||+ .|+.++ .+|. |
T Consensus 245 -----~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 245 -----SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred -----cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 1333445789999999776 445555 599999988774 4455555556788999999 566554 4555 5
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEE
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA 336 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 336 (434)
.++|+. .. .... + .. ........+|+|+|++|+..+.++ .|.+||+...... .+. .+....-..++
T Consensus 319 y~~dl~--~g-~~~~-l-t~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---~~~~~~~p~~s 387 (433)
T PRK04922 319 YRVAAS--GG-SAER-L-TF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---PGSLDESPSFA 387 (433)
T ss_pred EEEECC--CC-CeEE-e-ec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC---CCCCCCCceEC
Confidence 555543 11 1111 1 11 223344689999999988765433 6999998654332 111 11111112455
Q ss_pred eeCCEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 337 SVANYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 337 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
.+|++++..+.+ +.|.++++... ....+..+.+.+...+|+|
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence 567776665543 35777777543 3344445556667777765
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.2e-11 Score=103.75 Aligned_cols=264 Identities=16% Similarity=0.207 Sum_probs=161.2
Q ss_pred CCccCCCCCCCcccceee----eEEEee-ccccEEEEEE---cCCEEEEEeCCCeEEEecCCCc----e----------e
Q 046226 67 PTAAAGSSSPETSSSYRC----ISSVLK-KDGQILCIAV---GNGFIYTGSDSNVIRIWKQPEF----T----------E 124 (434)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~----~~~~~~-h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~~~~----~----------~ 124 (434)
...++.+..|..++.++. ...++. -...|+|++| .+..|+.|+.. -|.||..... . .
T Consensus 110 ~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~q 188 (445)
T KOG2139|consen 110 IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQ 188 (445)
T ss_pred hhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchh
Confidence 344455555555554443 222332 2456999999 67788888864 5889975421 1 1
Q ss_pred EeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE
Q 046226 125 CGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA 201 (434)
Q Consensus 125 ~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 201 (434)
+....+| .+|++++|++| .+++++. |..|.|||.+++..+.... ...+.+.-+.
T Consensus 189 vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----------------------~glgg~slLk 245 (445)
T KOG2139|consen 189 VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----------------------KGLGGFSLLK 245 (445)
T ss_pred heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc----------------------cCCCceeeEE
Confidence 1122344 68999999998 6676665 7899999998876654431 2556788899
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcce-------
Q 046226 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQL------- 272 (434)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~------- 272 (434)
|+||+.+|+++.-|+..++|+.....-........+.|...+|+|+| +|++++..- ++|.+........
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~ 323 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSI 323 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccc
Confidence 99999999999999999999654332222233344589999999999 566655444 4454432221111
Q ss_pred --eEEEEEec-----c----cccCeEEEEEecCCCEEEEEcCCC--------eEEEEEcCcccccccc--cCcccCcccc
Q 046226 273 --HTLILTLT-----A----KYSPVKTLTLTLDDGLLYGGCTDG--------YIHYWHKGWFSAQLQY--GGALQGHTHA 331 (434)
Q Consensus 273 --~~~~~~~~-----~----~~~~v~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~--~~~~~~~~~~ 331 (434)
..++..+. . -.+++.+++|+|.|.+|++.-..+ .|.+||.+..- ..++ .....+....
T Consensus 324 k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp-~vels~cg~i~ge~P~ 402 (445)
T KOG2139|consen 324 KRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP-PVELSYCGMIGGEYPA 402 (445)
T ss_pred eeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC-ceEEEecccccCCCCc
Confidence 11111111 1 135788999999999999876543 36667754221 1111 1222222223
Q ss_pred eEEEEee---CCEEEEecCCCcEEEEecc
Q 046226 332 VMCLASV---ANYVISGSADSTSRVWARE 357 (434)
Q Consensus 332 v~~~~~~---~~~l~s~~~dg~i~iwd~~ 357 (434)
..++.+. +.+|..+-..|.+.-|++.
T Consensus 403 ~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 403 YISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 3344432 4466666677777777654
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.50 E-value=8.9e-10 Score=99.30 Aligned_cols=276 Identities=14% Similarity=0.139 Sum_probs=169.5
Q ss_pred EEEEeCC----CeEEEecC--CCceeE--eeccCCCccEEEEEEeCC--EEEEEEc----CCeEEEeecCCC-CCceeeE
Q 046226 105 IYTGSDS----NVIRIWKQ--PEFTEC--GRLKAKTSMVVAMEVSHD--RVYAAYG----DGKIRVWRSTWD-NGVKHVK 169 (434)
Q Consensus 105 l~tg~~d----g~i~iwd~--~~~~~~--~~~~~~~~~v~~l~~~~~--~l~~~s~----dg~i~vwd~~~~-~~~~~~~ 169 (434)
+++|+.+ +.|.+|++ .+++.. ..+. .......++++++ .|+++.. ++.|..|++... ..+..+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 5566666 68998887 444432 2222 2334566788776 7777766 578999988765 2222221
Q ss_pred eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCC-CeeEEE---cc----------c
Q 046226 170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRD-SKCIET---IQ----------A 234 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~---~~----------~ 234 (434)
... ........++++|++++|+++. .+|.|.++++.. +..... +. .
T Consensus 81 ~~~-------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq 141 (345)
T PF10282_consen 81 SVP-------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQ 141 (345)
T ss_dssp EEE-------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTT
T ss_pred eec-------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccc
Confidence 110 1334456789999999999886 489999999986 433222 11 1
Q ss_pred CccCeEEEEEcCCC-eEEEE-eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEE
Q 046226 235 HSEPINALVVADDG-VLYSA-SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWH 311 (434)
Q Consensus 235 ~~~~v~~~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d 311 (434)
......++.++|++ ++++. -....|.+|++...... ...............+.+.|+|+++++++..+ ++.|.+|+
T Consensus 142 ~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~ 220 (345)
T PF10282_consen 142 EGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD 220 (345)
T ss_dssp SSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence 23457899999998 44444 34568999998732221 22212222344567899999999998876654 78899999
Q ss_pred cCcccccccccC---cc----cCcccceEEE--EeeCCEEEEec-CCCcEEEEecc-CCCceeeEEEeeccccceeEEEE
Q 046226 312 KGWFSAQLQYGG---AL----QGHTHAVMCL--ASVANYVISGS-ADSTSRVWARE-QDGRHTMLAVLVGHRGPIRCAIA 380 (434)
Q Consensus 312 ~~~~~~~~~~~~---~~----~~~~~~v~~~--~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~ 380 (434)
+........... .+ .+. .....+ +.+|++|+++. .++.|.+|++. ..+....+..+.......+.+++
T Consensus 221 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 221 YDPSDGSLTEIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EETTTTEEEEEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred ecccCCceeEEEEeeecccccccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 873222222111 11 111 123344 44577766554 56789999994 33455666666554555789999
Q ss_pred eecccCCCCCCcccEEEEee-cCCeEEEEecC
Q 046226 381 FLGRFGEETEDEYCTICTGS-LDGVLKMWRVT 411 (434)
Q Consensus 381 ~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~ 411 (434)
+|+ |++|+++. .++.|.+|+++
T Consensus 300 s~~---------g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPD---------GRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TT---------SSEEEEEETTTTEEEEEEEE
T ss_pred eCC---------CCEEEEEecCCCeEEEEEEe
Confidence 999 88887776 66799999885
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=3.1e-11 Score=100.07 Aligned_cols=316 Identities=12% Similarity=0.048 Sum_probs=184.7
Q ss_pred CCCCCCCCCccCCCCCCCcccceeeeEEEeec-----cccEEEEEE--cCCE-EEEEeCCCeEEEecCCCceeEeeccCC
Q 046226 60 SPRHPFNPTAAAGSSSPETSSSYRCISSVLKK-----DGQILCIAV--GNGF-IYTGSDSNVIRIWKQPEFTECGRLKAK 131 (434)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~--~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~~ 131 (434)
...++++++.+++.+.-..+ -+-..+++-| -+.|.-+.| +..+ |.....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlv--iRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLV--IRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEE--EeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 34567778888777643211 0011112212 245666777 4444 445577889999999988888888888
Q ss_pred CccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceee------EeeeccCCCCceeEEEeccc--------------
Q 046226 132 TSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHV------KLATIPKTGGAVRNLIVGKD-------------- 188 (434)
Q Consensus 132 ~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------------- 188 (434)
...+..+.|+|+ .|.+...|-.|.||.+.+......- +...+...+...........
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 999999999998 4666777999999998765432211 11111111111100000000
Q ss_pred --cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226 189 --KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 189 --~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
.+.-..-..+.+.|+|||+.|+ +||---.-.+..+ ...-.+..+.|+|.+ +|+.|+.|+.+|+.+--
T Consensus 171 l~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeee-eeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 0111222344555555554443 3442111111111 123468889999977 99999999999876420
Q ss_pred cc---------------------------------------c--------Cc-------ceeEEE------EEecccccC
Q 046226 266 FY---------------------------------------S--------EN-------QLHTLI------LTLTAKYSP 285 (434)
Q Consensus 266 ~~---------------------------------------~--------~~-------~~~~~~------~~~~~~~~~ 285 (434)
.. . .. ...... .........
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 00 0 00 000000 111122345
Q ss_pred eEEEEEecCCCEEEEEcC--CCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEecCCCcEEEEeccCCCc
Q 046226 286 VKTLTLTLDDGLLYGGCT--DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISGSADSTSRVWAREQDGR 361 (434)
Q Consensus 286 v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~ 361 (434)
+.-++|++|..++++-.. -..+-+||++..+.-..+ -...+|.++.|++. .|+.+.....+++|.....
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~W~psg~-- 393 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-- 393 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc--
Confidence 778999999998887643 457999998643322222 23457899999855 6666666778999987653
Q ss_pred eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226 362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL 405 (434)
Q Consensus 362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v 405 (434)
..+.. ....-.|..+.|..+ |..|+-.+.|-..
T Consensus 394 -~~V~v-P~~GF~i~~l~W~~~---------g~~i~l~~kDafc 426 (447)
T KOG4497|consen 394 -RVVGV-PKKGFNIQKLQWLQP---------GEFIVLCGKDAFC 426 (447)
T ss_pred -eEEec-CCCCceeeeEEecCC---------CcEEEEEcCCceE
Confidence 33332 233357889999988 8889999988653
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=8e-12 Score=115.89 Aligned_cols=234 Identities=12% Similarity=0.025 Sum_probs=140.4
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG 186 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
..|.++|.. +.....+..+...+.+.+|+|+ .|+..+. ...|.+||+.+++.....
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------------------ 236 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------------------ 236 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------------------
Confidence 367777863 4444455567788999999998 5666554 246999998766432211
Q ss_pred cccccCcCCCeEEEEEecCCCEEE-EEecCCcEEEE--EcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCCeEEE
Q 046226 187 KDKMMKHMGPITSIAINVSDDTLY-SASLDKTIKVW--RIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDATVRV 261 (434)
Q Consensus 187 ~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg~i~i 261 (434)
...+.+...+|+|||+.|+ +.+.+|...+| |+..+. ...+..+........|+||| .|+..+ .+|...+
T Consensus 237 -----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 237 -----NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred -----cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence 1334456789999999886 45667765555 454444 45555555566778999999 555444 4567777
Q ss_pred EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226 262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV 338 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 338 (434)
|.+..... .. ..+ ... ........|+|+|++|+..+.++ .|.+||+........ . ......-..++.+
T Consensus 311 y~~~~~~g-~~-~~l-t~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t---~~~~~~~p~~spd 381 (427)
T PRK02889 311 YRMPASGG-AA-QRV-TFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-T---DTTRDESPSFAPN 381 (427)
T ss_pred EEEECCCC-ce-EEE-ecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-c---CCCCccCceECCC
Confidence 76642111 11 111 111 22334678999999998776554 699999875432211 1 1111222345556
Q ss_pred CCEEEEecCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 339 ANYVISGSADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 339 ~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
|++|+..+.++ .+.+.++. + .....+..+.+.+...+|+|-
T Consensus 382 g~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 382 GRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCccCCC
Confidence 77766665443 34555553 3 334444456667777777763
No 233
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.50 E-value=6.5e-11 Score=108.62 Aligned_cols=264 Identities=17% Similarity=0.177 Sum_probs=165.8
Q ss_pred EEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 98 IAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 98 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
...+++.+++++.+|.+..+|..+++.+.................+.++.++.+|.+..||..+++.+.........
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~--- 177 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA--- 177 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc---
Confidence 33467888899999999999999999887765433322223334568888889999999999888776655321100
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc----C------eE-EEEEcC
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE----P------IN-ALVVAD 246 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~------v~-~~~~~~ 246 (434)
..+ .....+ .+. +..++.+..+|.+..+|.++|+.+........ . +. ...+ .
T Consensus 178 ---~~~-------~~~~sp----~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~ 240 (377)
T TIGR03300 178 ---LTL-------RGSASP----VIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-D 240 (377)
T ss_pred ---eee-------cCCCCC----EEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-E
Confidence 000 000111 111 34677888889999999999987765432110 0 11 1112 2
Q ss_pred CCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc
Q 046226 247 DGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ 326 (434)
Q Consensus 247 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 326 (434)
++.++.++.+|.+..||.. .+....... . ....... ..+..+++++.+|.|..+|..+.+...+.. .+.
T Consensus 241 ~~~vy~~~~~g~l~a~d~~--tG~~~W~~~--~----~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-~~~ 309 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLR--SGRVLWKRD--A----SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKND-ELK 309 (377)
T ss_pred CCEEEEEEcCCEEEEEECC--CCcEEEeec--c----CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccc-ccc
Confidence 4578888889999999986 222222111 1 1111122 246788888999999999987665544331 111
Q ss_pred CcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEEeecCCeE
Q 046226 327 GHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICTGSLDGVL 405 (434)
Q Consensus 327 ~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~Dg~v 405 (434)
. .........++.+++++.+|.|+++|..++ +.+..++.+...+.. -++. +..|+.++.||.|
T Consensus 310 ~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG---~~~~~~~~~~~~~~~sp~~~-----------~~~l~v~~~dG~l 373 (377)
T TIGR03300 310 Y--RQLTAPAVVGGYLVVGDFEGYLHWLSREDG---SFVARLKTDGSGIASPPVVV-----------GDGLLVQTRDGDL 373 (377)
T ss_pred C--CccccCEEECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCccccCCEEE-----------CCEEEEEeCCceE
Confidence 1 122233446889999999999999999888 666676666544333 2232 3458889999999
Q ss_pred EEE
Q 046226 406 KMW 408 (434)
Q Consensus 406 ~iw 408 (434)
+.+
T Consensus 374 ~~~ 376 (377)
T TIGR03300 374 YAF 376 (377)
T ss_pred EEe
Confidence 876
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=2.9e-12 Score=121.26 Aligned_cols=184 Identities=19% Similarity=0.262 Sum_probs=146.7
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccE----EEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeecc
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMV----VAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIP 174 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~ 174 (434)
+...++.+..++.+.+||...+.....+....... .-+.++++ ++++|+.-+.|.+|+....+...
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-------- 169 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-------- 169 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--------
Confidence 77888999999999999998877777665443322 11223444 78888889999999976222211
Q ss_pred CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE-EcccCccCeEEEEEcCCCeEEEE
Q 046226 175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE-TIQAHSEPINALVVADDGVLYSA 253 (434)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~s~ 253 (434)
.+.+|.+.|.++.++-||.++++.++|.++++|++++.+... ..-+|...|..+.+.|+ .++++
T Consensus 170 --------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~ 234 (967)
T KOG0974|consen 170 --------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITV 234 (967)
T ss_pred --------------eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEe
Confidence 123799999999999999999999999999999999988766 66789999999999988 99999
Q ss_pred eCCCeEEEEecccccCcceeEEEEEecccc-cCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 254 SDDATVRVWRRYFYSENQLHTLILTLTAKY-SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 254 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
+.|.+.++|+.. ......+.+|. ..+..++..++...+++++.||.+++||+..
T Consensus 235 gedctcrvW~~~-------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 235 GEDCTCRVWGVN-------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceEEEEEecc-------cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 999999999755 12222555554 4689999999999999999999999999653
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=3.5e-11 Score=107.42 Aligned_cols=186 Identities=17% Similarity=0.224 Sum_probs=148.9
Q ss_pred CCEEEEEeCCCeEEEecCCCceeEeeccC---CCccEEEEEE------eC--------------C--EEEEEEcCCeEEE
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFTECGRLKA---KTSMVVAMEV------SH--------------D--RVYAAYGDGKIRV 156 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~------~~--------------~--~l~~~s~dg~i~v 156 (434)
..++|....||.+||||...++....+.. -.+..++..| +| + .++.|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 46889999999999999998887766643 2333444444 11 1 5778888999999
Q ss_pred eecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc
Q 046226 157 WRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS 236 (434)
Q Consensus 157 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 236 (434)
|++..++....+.. .+|.+.|.++.++.+-..|.+++.|+.+..|+...++.++.++...
T Consensus 85 ys~~~g~it~~~st--------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 85 YSVAGGEITAKLST--------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred EEecCCeEEEEEec--------------------CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC
Confidence 99876655444421 2699999999999999999999999999999999999999999999
Q ss_pred cCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecC-----CCEEEEE-cCCCeEEE
Q 046226 237 EPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLD-----DGLLYGG-CTDGYIHY 309 (434)
Q Consensus 237 ~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~i 309 (434)
..+.+++++||+ .+++++ +.|++||+. ..+.+..+.+|.++|+++.|..+ |.+++++ ..+..+.+
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIE------TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEcc------CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 999999999999 777766 589999987 77888999999999999999876 6666654 44566778
Q ss_pred EEcCcc
Q 046226 310 WHKGWF 315 (434)
Q Consensus 310 ~d~~~~ 315 (434)
|-+...
T Consensus 217 w~v~~~ 222 (541)
T KOG4547|consen 217 WVVEKE 222 (541)
T ss_pred EEEEcc
Confidence 876543
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=1.2e-09 Score=98.29 Aligned_cols=304 Identities=10% Similarity=0.050 Sum_probs=170.6
Q ss_pred ceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEE
Q 046226 81 SYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIR 155 (434)
Q Consensus 81 ~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~ 155 (434)
+.+.+.++......-..+.| +|+++++++.||.|.++|+.+.+.+.+++.... ...++++++ ++++++ .++.+.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEE
T ss_pred CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCcee
Confidence 45566666655444344566 899999999999999999999999999987554 678999987 666554 589999
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEE-Ecc
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIE-TIQ 233 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~-~~~ 233 (434)
++|.++.+.++.+.....+.. .....+..+..++....++..-. .+.|.+.|....+.+. ...
T Consensus 104 v~D~~tle~v~~I~~~~~~~~---------------~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVD---------------GPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp EEETTT--EEEEEE--EE-TT---------------TS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred Eeccccccceeeccccccccc---------------ccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 999988877777654332211 13456778888888886665544 5888888987654332 222
Q ss_pred cCccCeEEEEEcCCC-e-EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC----------CEEEEE
Q 046226 234 AHSEPINALVVADDG-V-LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD----------GLLYGG 301 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~ 301 (434)
..........|.|++ + +++...+..|-++|.. ..............|..+...+ .+|.. ...++.
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~--~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK--TGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT--TTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEE
T ss_pred cccccccccccCcccceeeecccccceeEEEeec--cceEEEEeeccccccccccccc-cCCCcceEEeeccccceeccc
Confidence 244567789999999 4 4555677899999977 1111111111122333333332 23322 222111
Q ss_pred cCCCeEEEEEcCcccccccccCcccCcccce-EEEEeeCCEEEEe----cCCCcEEEEeccCCCceeeEEEeeccc-cce
Q 046226 302 CTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-MCLASVANYVISG----SADSTSRVWAREQDGRHTMLAVLVGHR-GPI 375 (434)
Q Consensus 302 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v 375 (434)
-....+.+||.... +....+......+ ....++++++++. ...+.|.++|.++. +.+..+.... ..+
T Consensus 246 ig~~~v~v~d~~~w----kvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~ 318 (369)
T PF02239_consen 246 IGTDPVSVHDDYAW----KVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRV 318 (369)
T ss_dssp EE--TTT-STTTBT----SEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--E
T ss_pred ccCCccccchhhcC----eEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcE
Confidence 11223334443322 2222233322332 2234456688877 45689999999987 5555554333 258
Q ss_pred eEEEEeecccCCCCCCcccEEEEeec--CCeEEEEecCCCCccccc
Q 046226 376 RCAIAFLGRFGEETEDEYCTICTGSL--DGVLKMWRVTRPKSSCGH 419 (434)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~s~~~--Dg~v~iw~~~~~~~~~~~ 419 (434)
..+.|+++ |..+..+.. +|.|.+||..+.+.....
T Consensus 319 ~h~ef~~d---------G~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 319 VHMEFNPD---------GKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp EEEEE-TT---------SSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred eccEECCC---------CCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 88999999 665544433 337999999988765543
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=5.2e-11 Score=97.26 Aligned_cols=271 Identities=13% Similarity=0.116 Sum_probs=175.0
Q ss_pred CCeEEEecCCCceeEe--ec-cCCCccEEEEEEeC-----C-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226 111 SNVIRIWKQPEFTECG--RL-KAKTSMVVAMEVSH-----D-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR 181 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~--~~-~~~~~~v~~l~~~~-----~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
-|.+.+|++.+.+... ++ ......+..+.|.- + .++-+-.+|.|.++..........+.-.... .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~----k-- 118 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSK----K-- 118 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchh----h--
Confidence 3677888877655433 11 12344566777753 2 4566777899999976544332222110000 0
Q ss_pred EEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC--eEEEEeCCC
Q 046226 182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK--CIETIQAHSEPINALVVADDG--VLYSASDDA 257 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg 257 (434)
-......++.|++.+..++++..+|.+.+-+..... .++.++.|.-...-..|+... .+++|+.|+
T Consensus 119 ----------i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~ 188 (339)
T KOG0280|consen 119 ----------ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDG 188 (339)
T ss_pred ----------hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCc
Confidence 011135678889999999999999999966655543 345888999999888888655 899999999
Q ss_pred eEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226 258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA 336 (434)
Q Consensus 258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 336 (434)
.+..||+|... ...-.....|...|.+|.-+| .+.++++|+.|-.|++||.+....+.... .-.+.|+.+.
T Consensus 189 ~l~~~D~R~p~----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----~v~GGVWRi~ 260 (339)
T KOG0280|consen 189 SLSCWDIRIPK----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----KVGGGVWRIK 260 (339)
T ss_pred eEEEEEecCCc----ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----ccccceEEEE
Confidence 99999998211 122223556788899998877 57899999999999999998555443321 1225677777
Q ss_pred eeCC---EEEEecCCCcEEEEeccCCCce--eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee-cCCeEE-EEe
Q 046226 337 SVAN---YVISGSADSTSRVWAREQDGRH--TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLK-MWR 409 (434)
Q Consensus 337 ~~~~---~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~-iw~ 409 (434)
..+. .++.++.-.-.+|-+...+... ..+...+.|.+-+....|... ..+|+|++ .|..++ +|-
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~---------~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK---------DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc---------cceeeeeeccccceeeeee
Confidence 6643 2344444444667776654211 244556677777777777433 45788875 577755 786
Q ss_pred cCCCC
Q 046226 410 VTRPK 414 (434)
Q Consensus 410 ~~~~~ 414 (434)
.-++.
T Consensus 332 ~~t~~ 336 (339)
T KOG0280|consen 332 HITGE 336 (339)
T ss_pred eccCC
Confidence 55554
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=6.8e-11 Score=110.25 Aligned_cols=230 Identities=9% Similarity=-0.052 Sum_probs=140.1
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG 186 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
..|.+||... .....+..|...+.+.+|+|| .|+..+. +..|.+||+.++......
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------ 242 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------ 242 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence 3788899754 444556677888999999998 5665553 568999998765432111
Q ss_pred cccccCcCCCeEEEEEecCCCEEE-EEecCCc--EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC--eE
Q 046226 187 KDKMMKHMGPITSIAINVSDDTLY-SASLDKT--IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA--TV 259 (434)
Q Consensus 187 ~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i 259 (434)
.+.+.+...+|+|||+.|+ +.+.++. |++||+.+++. ..+..+........|+||+ .|+..+ .+| .|
T Consensus 243 -----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 243 -----NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -----cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 2455677889999999876 4555554 88889987765 4455566667789999999 566554 344 57
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEE
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA 336 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 336 (434)
.++|+. ...... +......+....|+|+|+.|+....+ ..|.+||+...... .+ . .+....-..++
T Consensus 317 y~~d~~---g~~~~~----lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~l-t--~~~~~~~p~~s 385 (435)
T PRK05137 317 YVMNAD---GSNPRR----ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-IL-T--SGFLVEGPTWA 385 (435)
T ss_pred EEEECC---CCCeEE----eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ec-c--CCCCCCCCeEC
Confidence 777765 111211 11223445668899999999876543 36788887433221 11 1 11111223344
Q ss_pred eeCCEEEEecCC------CcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 337 SVANYVISGSAD------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 337 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
.+|+.|+..+.+ ..++++|+..+.. ..+. ..+.+...+|+|
T Consensus 386 pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~----~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 386 PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE----REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCEEEEEEccCCCCCcceEEEEECCCCce----EEcc-CCCCccCcccCC
Confidence 567766554432 2577778765421 2222 233455556665
No 239
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1.3e-12 Score=129.64 Aligned_cols=187 Identities=17% Similarity=0.279 Sum_probs=145.3
Q ss_pred ccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226 133 SMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY 210 (434)
Q Consensus 133 ~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 210 (434)
..|.++.-+|. +.++|+.||.|++|....++.+..++. .....|+.+.|+.+|+.+.
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt---------------------~g~s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT---------------------AGNSRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec---------------------cCcchhhhhhhcccCCcee
Confidence 34556655664 889999999999999887777666643 2337899999999999999
Q ss_pred EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEe---CCCeEEEEecccccCcceeEEEEEecccccCeE
Q 046226 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAKYSPVK 287 (434)
Q Consensus 211 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 287 (434)
.+..||.+.+|.+. .++....+.|.....++.|-. ..+++++ .++.+.+||.... .....+. ..|.+.++
T Consensus 2268 i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~---~~~s~v~--~~H~~gaT 2340 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLP---PMNSLVH--TCHDGGAT 2340 (2439)
T ss_pred eeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccC---cccceee--eecCCCce
Confidence 99999999999986 677788888999999998876 4455543 5788999997621 1222222 78999999
Q ss_pred EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226 288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 359 (434)
++++.|..+.|++|+.+|.|.+||++..... +.++. +. ...++++|+..|.++||++..-
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql~----h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQLR----HTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHHH----HHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999999999999999999998643222 12211 22 4569999999999999999865
No 240
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.42 E-value=3.6e-09 Score=93.08 Aligned_cols=273 Identities=10% Similarity=-0.045 Sum_probs=162.6
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
+.|.+.|..+++.+..+.....+-. + ++|+ .++++. .+..|.+||..+.+.+..+.+...|..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~--- 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF--- 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh---
Confidence 8999999999999988875444333 4 8887 555554 489999999998888777754322110
Q ss_pred eeEEEeccccccCcCCCeEEEEEecCCCEEEEEe-c-CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCC
Q 046226 180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS-L-DKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDA 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 257 (434)
.....-..++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-...+++..+ .-+.||
T Consensus 102 ------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~-~~~~Dg 167 (352)
T TIGR02658 102 ------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF-MHCRDG 167 (352)
T ss_pred ------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE-EEeecC
Confidence 0123345788999999999776 3 6899999999999988887532 2222222222222 223444
Q ss_pred eEEEEecccccCcceeEEEEEecccccCeEE-EEEec-CCCEEEEEcCCCeEEEEEcCcccccccc-cCcccC-------
Q 046226 258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKT-LTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQY-GGALQG------- 327 (434)
Q Consensus 258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~------- 327 (434)
......+...... .......+.....++.. =.+.+ +|+++++..+ |.|.+.|+......... ...+..
T Consensus 168 ~~~~v~~d~~g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 168 SLAKVGYGTKGNP-KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred ceEEEEecCCCce-EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccccc
Confidence 4444333211110 00011111110011000 03455 8888888777 99999996543221111 000000
Q ss_pred ccc--ceEEEEeeCCEEEEec----------CCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc-
Q 046226 328 HTH--AVMCLASVANYVISGS----------ADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC- 394 (434)
Q Consensus 328 ~~~--~v~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~- 394 (434)
... ...++..+++.++... ..+.|.++|..+. +.+..+.. ...+..++++|+ ++
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~D---------gkp 312 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQD---------AKP 312 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCC---------CCe
Confidence 111 1234444566655532 2257999999887 56665553 347889999999 66
Q ss_pred EEEEee-cCCeEEEEecCCCCcccc
Q 046226 395 TICTGS-LDGVLKMWRVTRPKSSCG 418 (434)
Q Consensus 395 ~l~s~~-~Dg~v~iw~~~~~~~~~~ 418 (434)
+|++.. .++.|.+.|..+++.+..
T Consensus 313 ~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred EEEEeCCCCCcEEEEECcCCeEEee
Confidence 666555 688999999999887654
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.2e-10 Score=106.26 Aligned_cols=195 Identities=14% Similarity=0.048 Sum_probs=119.0
Q ss_pred cCCCeEEEEEecCCCEEEEEec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEE-eCCC--eEEEEecc
Q 046226 193 HMGPITSIAINVSDDTLYSASL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSA-SDDA--TVRVWRRY 265 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~-~~dg--~i~iwd~~ 265 (434)
+...+.+.+|+|||+.|+..+. +..|++||+.+++... +....+.+....|+||| .|+.. ..+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~ 275 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 275 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence 5668999999999999886542 4579999998876432 22233345578999999 55543 4454 58888876
Q ss_pred cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEE--EcCcccccccccCcccCcccceEEEEeeCCEE
Q 046226 266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYW--HKGWFSAQLQYGGALQGHTHAVMCLASVANYV 342 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 342 (434)
. .. . ..+..+...+....|+|||+.|+..+. ++...|| |+..... ... ...++...-..++.+|++|
T Consensus 276 t---g~---~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~--~~l-t~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 276 S---GQ---I-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP--QRI-TWEGSQNQDADVSSDGKFM 345 (429)
T ss_pred C---CC---E-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCCCCEE
Confidence 1 11 1 122333446778999999998877665 3444555 5443221 111 1112221223445567777
Q ss_pred EEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe---EEEEecCC
Q 046226 343 ISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV---LKMWRVTR 412 (434)
Q Consensus 343 ~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~---v~iw~~~~ 412 (434)
+..+.+ ..|++||+.++.. ..+. . ........|+|+ |++|+.++.|+. +.+|+++.
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~-~~Lt---~-~~~~~~p~~SpD---------G~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGV-QVLT---D-TFLDETPSIAPN---------GTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEEccCCCceEEEEECCCCCe-EEeC---C-CCCCCCceECCC---------CCEEEEEEcCCCceEEEEEECCC
Confidence 665443 3588899987632 2222 1 112335678888 999999888765 67777753
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=3.4e-11 Score=98.30 Aligned_cols=107 Identities=17% Similarity=0.277 Sum_probs=81.9
Q ss_pred CccEEEEEEeCC--EEEE--EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226 132 TSMVVAMEVSHD--RVYA--AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD 207 (434)
Q Consensus 132 ~~~v~~l~~~~~--~l~~--~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 207 (434)
.++|.+++|+|+ .+++ |..++.|.+||++ .+.+..+ +...++.+.|+|+|+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~------------------------~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF------------------------GTQPRNTISWSPDGR 113 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee------------------------cCCCceEEEECCCCC
Confidence 457999999997 4444 3457899999985 2222222 456778999999999
Q ss_pred EEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC------CCeEEEEecc
Q 046226 208 TLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD------DATVRVWRRY 265 (434)
Q Consensus 208 ~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~------dg~i~iwd~~ 265 (434)
+|++++.+ |.|.+||+++.+.+.... | ..+..++|+|+| +++++.. |..++||+..
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99998754 679999999988887775 3 347899999999 7777653 7888999865
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=2.1e-11 Score=101.62 Aligned_cols=250 Identities=17% Similarity=0.227 Sum_probs=178.2
Q ss_pred eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC-CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEE
Q 046226 123 TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD-NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITS 199 (434)
Q Consensus 123 ~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 199 (434)
..+..+++|.+.|++...-|. .+++++.|.+++||--... +.-..+ ......++++
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI---------------------~~~mP~~~~~ 73 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI---------------------YHYMPSPCSA 73 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh---------------------hhhCCCCceE
Confidence 345667888888888777664 8999999999999953322 111111 1135678999
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcC----CCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226 200 IAINVSDDTLYSASLDKTIKVWRIR----DSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT 274 (434)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 274 (434)
+.+.++...|++|-..|++.-+.+. ....++....|...+..+-|+... .+++.+.|..+. |-... .+.....
T Consensus 74 ~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e-~~~~lg~ 151 (404)
T KOG1409|consen 74 MEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE-SGNRLGG 151 (404)
T ss_pred eeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeec-cCCcccc
Confidence 9999999999999999999988663 345566677899999999998666 888888887764 42220 0111111
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEE
Q 046226 275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSR 352 (434)
Q Consensus 275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~ 352 (434)
.... ...+.+.+.-. +.+.|...|.|.+-.+. .........+.+|.+.+.++.|++ ..|.+|..|..+.
T Consensus 152 Y~~~-----~~~t~~~~d~~--~~fvGd~~gqvt~lr~~--~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 152 YNFE-----TPASALQFDAL--YAFVGDHSGQITMLKLE--QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred eEee-----ccCCCCceeeE--EEEecccccceEEEEEe--ecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 1110 11112222211 66677777877776654 233444557889999999999984 4899999999999
Q ss_pred EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
+||+.... ....++.+|.+.|..+...+. -..+++++.||.|-+|+++....
T Consensus 223 ~wdigg~~--g~~~el~gh~~kV~~l~~~~~---------t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 223 MWDIGGRK--GTAYELQGHNDKVQALSYAQH---------TRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred EEeccCCc--ceeeeeccchhhhhhhhhhhh---------heeeeeccCCCeEEEEeccceee
Confidence 99997643 456678899999999888777 78899999999999999986543
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.8e-11 Score=109.73 Aligned_cols=198 Identities=14% Similarity=0.027 Sum_probs=122.0
Q ss_pred CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCeEEEEeccc
Q 046226 192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDATVRVWRRYF 266 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~i~iwd~~~ 266 (434)
.+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+||+ .|+ +.+.+|...+|.+..
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366788999999999999877643 359999999887543 33334556789999999 554 567788878876652
Q ss_pred ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe
Q 046226 267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG 345 (434)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 345 (434)
.... ...+..+........|+|||+.|+..+. +|...||.+.......... ...+....-..++++|++|+..
T Consensus 272 ~~~~-----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 272 DGSG-----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred CCCC-----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEE
Confidence 1111 2223334444567889999998876554 5666777654222211111 1112211123455678888776
Q ss_pred cCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC-e--EEEEec
Q 046226 346 SADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG-V--LKMWRV 410 (434)
Q Consensus 346 ~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-~--v~iw~~ 410 (434)
+.++ .|++||+.++.. . .+.. ........|+|+ |++|+.++.++ . +.+-++
T Consensus 346 s~~~g~~~I~v~d~~~g~~-~---~lt~-~~~~~~p~~spd---------g~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQV-T---ALTD-TTRDESPSFAPN---------GRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EccCCcEEEEEEECCCCCe-E---EccC-CCCccCceECCC---------CCEEEEEEecCCCEEEEEEEC
Confidence 6554 699999987632 2 2222 223456788888 77777766544 3 444444
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=8.7e-11 Score=109.38 Aligned_cols=196 Identities=17% Similarity=0.073 Sum_probs=121.1
Q ss_pred CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCCC--eEEEEec
Q 046226 192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDDA--TVRVWRR 264 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg--~i~iwd~ 264 (434)
.+...+.+.+|+||++.|+..+.+ ..|++||+.+++... +....+...+..|+|+| .+ ++.+.+| .|.+||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 366788999999999999877643 469999998876533 33334455678999999 44 4555555 5888887
Q ss_pred ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCe--EEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226 265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGY--IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY 341 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 341 (434)
.. .. ...+..+.......+|+|||+.|+..+. +|. |+++|+...... .. ...+....-.+++.+|++
T Consensus 280 ~~---g~----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~l-t~~g~~~~~~~~SpDG~~ 349 (433)
T PRK04922 280 GS---RQ----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RL-TFQGNYNARASVSPDGKK 349 (433)
T ss_pred CC---CC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Ee-ecCCCCccCEEECCCCCE
Confidence 61 11 1223333344567899999998887654 454 556665433221 11 112222222344556887
Q ss_pred EEEecCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC---CeEEEEecCC
Q 046226 342 VISGSADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD---GVLKMWRVTR 412 (434)
Q Consensus 342 l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D---g~v~iw~~~~ 412 (434)
++..+.++ .|.+||+.++. .. .+. +........|+|+ |++|+..+.+ +.|.++++..
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spd---------G~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPN---------GSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCC---------CCEEEEEEecCCceEEEEEECCC
Confidence 77654332 69999997763 22 222 2223445688888 8877766653 4577777754
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=7e-11 Score=96.46 Aligned_cols=146 Identities=15% Similarity=0.257 Sum_probs=96.3
Q ss_pred EEEEEecCCCEEEEEec----------CCcEEEEEcCC-CeeEEEccc-CccCeEEEEEcCCC-eE--EEEeCCCeEEEE
Q 046226 198 TSIAINVSDDTLYSASL----------DKTIKVWRIRD-SKCIETIQA-HSEPINALVVADDG-VL--YSASDDATVRVW 262 (434)
Q Consensus 198 ~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~-~l--~s~~~dg~i~iw 262 (434)
..+.|+++|++|+.-.. -|...+|.++. ...+..+.. ..++|.+++|+|++ .+ +.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788899988775433 13355555522 233444433 34579999999999 54 334567899999
Q ss_pred ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCeEEEEEcCcccccccccCcccCcccceEEEEe--
Q 046226 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-- 337 (434)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-- 337 (434)
|++ ...+..+ ....+..+.|+|+|++|++++. .|.|.+||++...... ... | ..+..++|
T Consensus 89 d~~-------~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVK-------GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFE-H-SDATDVEWSP 153 (194)
T ss_pred cCc-------ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----ccc-c-CcEEEEEEcC
Confidence 985 2222333 3457789999999999999864 4679999987433322 222 2 23456666
Q ss_pred eCCEEEEecC------CCcEEEEeccC
Q 046226 338 VANYVISGSA------DSTSRVWAREQ 358 (434)
Q Consensus 338 ~~~~l~s~~~------dg~i~iwd~~~ 358 (434)
+|++|+++.. |+.++||+...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEecC
Confidence 4778888764 78899999864
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.8e-10 Score=106.18 Aligned_cols=196 Identities=9% Similarity=-0.045 Sum_probs=123.7
Q ss_pred CcCCCeEEEEEecCCCEEEEEec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eE-EEEeCCCe--EEEEec
Q 046226 192 KHMGPITSIAINVSDDTLYSASL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VL-YSASDDAT--VRVWRR 264 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~s~~~dg~--i~iwd~ 264 (434)
.|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+||| .| ++.+.++. |.+||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 47778999999999999887653 468999999888653 344456677889999999 54 45666665 666676
Q ss_pred ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceE--EEEeeC
Q 046226 265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVM--CLASVA 339 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~--~~~~~~ 339 (434)
. . .. ...+..+........|+|||+.|+..+. +| .|+++|+....... + ..+...+. .++.+|
T Consensus 278 ~--~-~~----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l----t~~~~~~~~~~~SpdG 345 (435)
T PRK05137 278 R--S-GT----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-I----SFGGGRYSTPVWSPRG 345 (435)
T ss_pred C--C-Cc----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-e----ecCCCcccCeEECCCC
Confidence 5 1 11 1223334445667899999998887664 33 67777865432211 1 11122223 344567
Q ss_pred CEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC------CeEEEEec
Q 046226 340 NYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD------GVLKMWRV 410 (434)
Q Consensus 340 ~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D------g~v~iw~~ 410 (434)
++|+....+ ..|.+||+..+.. . .+. ....+....|+|+ |++|+..+.+ ..|.+.++
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~~-~---~lt-~~~~~~~p~~spD---------G~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSGE-R---ILT-SGFLVEGPTWAPN---------GRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCce-E---ecc-CCCCCCCCeECCC---------CCEEEEEEccCCCCCcceEEEEEC
Confidence 777765543 3688888765421 1 221 1224567888888 7877665443 25777787
Q ss_pred CCCC
Q 046226 411 TRPK 414 (434)
Q Consensus 411 ~~~~ 414 (434)
..++
T Consensus 412 ~g~~ 415 (435)
T PRK05137 412 TGRN 415 (435)
T ss_pred CCCc
Confidence 6544
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=3e-12 Score=113.22 Aligned_cols=285 Identities=16% Similarity=0.198 Sum_probs=180.5
Q ss_pred eEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCC-------ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEE
Q 046226 85 ISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPE-------FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR 155 (434)
Q Consensus 85 ~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~ 155 (434)
+..+.||...|.+++- +.+-+++++.|++|++|.++. ..+..+++.|+.+|.++.|-.+.-..++.||.|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giH 807 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIH 807 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcce
Confidence 4568899999999988 788999999999999998753 3466788999999999999998777788899999
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-ecCCcEEEEEcCCCeeEEEcc-
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-SLDKTIKVWRIRDSKCIETIQ- 233 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~- 233 (434)
+||.--+.....+.... . .+..+.|.|+.- -+...+..| +...+|+++|.+.++-...++
T Consensus 808 lWDPFigr~Laq~~dap--k---------------~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAP--K---------------EGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eecccccchhHhhhcCc--c---------------cCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEe
Confidence 99965444333221110 0 012233444321 133444444 678899999999887655554
Q ss_pred ----cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226 234 ----AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH 308 (434)
Q Consensus 234 ----~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 308 (434)
+....+.++++.+.| .++++-.+|.|.+.|.+ ....+..+...+.....++ .|..+.|+....|..+.
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR------~G~vINswrpmecdllqla-apsdq~L~~saldHsla 942 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR------NGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLA 942 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC------CCceeccCCcccchhhhhc-CchhHHHHhhcccceeE
Confidence 345678999999999 99999999999999988 3334444433333333333 34556677666777777
Q ss_pred E-EEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC-CceeeEEEe--eccccceeEEEEeecc
Q 046226 309 Y-WHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD-GRHTMLAVL--VGHRGPIRCAIAFLGR 384 (434)
Q Consensus 309 i-~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~--~~h~~~v~~~~~~~~~ 384 (434)
+ |-.-.... .+ ..+....+..-+..-|--|++......+.+|.-... .....+..+ ....+..++++..|-
T Consensus 943 VnWhaldgim--h~--q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL- 1017 (1034)
T KOG4190|consen 943 VNWHALDGIM--HL--QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL- 1017 (1034)
T ss_pred eeehhcCCee--ee--ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc-
Confidence 7 65321111 11 011111111122223556677766677777742211 000111111 123556778888877
Q ss_pred cCCCCCCcccEEEEeecCCeEEE
Q 046226 385 FGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 385 ~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
..-++.|.+.|.|.+
T Consensus 1018 --------N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1018 --------NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred --------cchhhccCCCCceee
Confidence 667888888888875
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=6.1e-08 Score=87.48 Aligned_cols=254 Identities=16% Similarity=0.149 Sum_probs=154.8
Q ss_pred ccEEEEEE--cCCEEEEEeC----CCeEEEecCCCc----eeEeeccCCCccEEEEEEeCC--EEEEEE-cCCeEEEeec
Q 046226 93 GQILCIAV--GNGFIYTGSD----SNVIRIWKQPEF----TECGRLKAKTSMVVAMEVSHD--RVYAAY-GDGKIRVWRS 159 (434)
Q Consensus 93 ~~v~~~~~--~~~~l~tg~~----dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~~~~--~l~~~s-~dg~i~vwd~ 159 (434)
.....+++ ++++|++... ++.|..|++... +.+.+.......-..++++++ .|+++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 33455666 8888888876 568988887653 334444433445567889887 666666 4999999999
Q ss_pred CCCCCceeeE-eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCe--e--EEEcc
Q 046226 160 TWDNGVKHVK-LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSK--C--IETIQ 233 (434)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~--~--~~~~~ 233 (434)
.....+.... ...... .+............++.|+|+++++++... ...|.+|++.... . ...+.
T Consensus 117 ~~~g~l~~~~~~~~~~g---------~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~ 187 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEG---------SGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK 187 (345)
T ss_dssp CTTSEEEEEEEEEESEE---------EESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE
T ss_pred cCCcccceeeeecccCC---------CCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc
Confidence 8754433331 110000 000001123455788999999999888643 3479999997654 2 12222
Q ss_pred -cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEeccc------ccCeEEEEEecCCCEEEEEc-C
Q 046226 234 -AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK------YSPVKTLTLTLDDGLLYGGC-T 303 (434)
Q Consensus 234 -~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~ 303 (434)
.....-+.+.|+|++ .+++.-.++.|.++++..... ........... ......|+++|||++|+++. .
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 244567899999998 455666788999998872222 22222222111 12578899999999988865 4
Q ss_pred CCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEec-CCCcEEEEecc
Q 046226 304 DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGS-ADSTSRVWARE 357 (434)
Q Consensus 304 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~iwd~~ 357 (434)
.+.|.+|+++.....................+++ +|++|+++. .++.|.+|+++
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 6789999995443333333333222223455655 688777665 56799999875
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.31 E-value=2.1e-10 Score=95.85 Aligned_cols=273 Identities=15% Similarity=0.207 Sum_probs=162.6
Q ss_pred CccEEEEEEeC--CEEEEEEcCCeEEEeecCCCCCceeeEee-eccCCCCceeEEEeccccccCcCCCeEEEEEecCC--
Q 046226 132 TSMVVAMEVSH--DRVYAAYGDGKIRVWRSTWDNGVKHVKLA-TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-- 206 (434)
Q Consensus 132 ~~~v~~l~~~~--~~l~~~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 206 (434)
..-|.++.|.. ++|++|..+|.|.++.-.....- .+... ...........+ +...-...|..+.|.+++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYL-----kSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYL-----KSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchh-----hhhhhhhhhhhceecCCCCc
Confidence 44578888865 49999999999999965433221 11111 111111111111 111345678899998865
Q ss_pred CEEEEEecCCcEEEEEcCCCee-----------------------------------EEEc-ccCccCeEEEEEcCCCeE
Q 046226 207 DTLYSASLDKTIKVWRIRDSKC-----------------------------------IETI-QAHSEPINALVVADDGVL 250 (434)
Q Consensus 207 ~~l~s~~~dg~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~l 250 (434)
..++..+.|.+|++|.+..... .+.+ .+|.--|++|.++.|+..
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 4577778899999998753210 0111 247778999999999944
Q ss_pred EEEeCCCeEEEEecccccCcceeEEEEEec----ccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccccccC--
Q 046226 251 YSASDDATVRVWRRYFYSENQLHTLILTLT----AKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGG-- 323 (434)
Q Consensus 251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 323 (434)
+....|=.|.+|++.... +...++...+ ....-|++..|+| ..+.++-.+..|+|++-|++....-.....
T Consensus 179 ~lSADdLRINLWnlei~d--~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIID--QSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred EeeccceeeeeccccccC--CceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 455677889999987222 2222222211 1223578889999 457788888999999999984321110000
Q ss_pred --c--------ccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccc------eeEEEEeeccc
Q 046226 324 --A--------LQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGP------IRCAIAFLGRF 385 (434)
Q Consensus 324 --~--------~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~ 385 (434)
. +..-...|..+.|+ |+|+++-+. -+|++||+.-.. .++.+++-|..- +..-...-+++
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKF 333 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKF 333 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhhee
Confidence 0 11112345666664 778887643 689999995433 455666666421 10000111122
Q ss_pred CCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 386 GEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 386 ~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
...++.++.+++||+....++++++..+..
T Consensus 334 ec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 334 ECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EEEEcCCcceEecccccceEEEecCCCCcc
Confidence 222333378999999999999999776643
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=4.5e-10 Score=100.06 Aligned_cols=246 Identities=13% Similarity=0.097 Sum_probs=158.0
Q ss_pred CCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226 131 KTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD 207 (434)
Q Consensus 131 ~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 207 (434)
+....+.|..+|| .+++|...-.|++||+..-.....-. -....|.-.-++.|-.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh----------------------lDae~V~feiLsDD~S 107 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH----------------------LDAEVVDFEILSDDYS 107 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec----------------------ccccceeEEEeccchh
Confidence 5677888999998 56677778999999986432111110 0122344444444544
Q ss_pred EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226 208 TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV 286 (434)
Q Consensus 208 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 286 (434)
.++--..|.+|-+..-- |.- ..++. ...-.+++++.-. -|+.++....|.-+++. ....+..+....+.+
T Consensus 108 K~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLE------qGrfL~P~~~~~~~l 178 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE------QGRFLNPFETDSGEL 178 (703)
T ss_pred hheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEcc------ccccccccccccccc
Confidence 45555557777665432 211 11111 1123456666444 45555555667777776 455566666667899
Q ss_pred EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc--cCcccCcc-----cceEEEEeeC--CEEEEecCCCcEEEEecc
Q 046226 287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY--GGALQGHT-----HAVMCLASVA--NYVISGSADSTSRVWARE 357 (434)
Q Consensus 287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~-----~~v~~~~~~~--~~l~s~~~dg~i~iwd~~ 357 (434)
+++.+++-..+|++|+.+|.|..||.+.......+ ......|. ..|+++.|++ -.+++|+.+|.+.|||++
T Consensus 179 N~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLR 258 (703)
T KOG2321|consen 179 NVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLR 258 (703)
T ss_pred eeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcc
Confidence 99999999999999999999999998765443322 12222333 3489999964 489999999999999999
Q ss_pred CCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCccc
Q 046226 358 QDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 358 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~~ 417 (434)
... ..+..-.+..-+|..+.|.+.. ++..|+|.. ...++|||-.+++...
T Consensus 259 a~~--pl~~kdh~~e~pi~~l~~~~~~-------~q~~v~S~D-k~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 259 ASK--PLLVKDHGYELPIKKLDWQDTD-------QQNKVVSMD-KRILKIWDECTGKPMA 308 (703)
T ss_pred cCC--ceeecccCCccceeeecccccC-------CCceEEecc-hHHhhhcccccCCcee
Confidence 863 2222333345578889887652 144566653 5689999999988753
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=9.2e-10 Score=100.68 Aligned_cols=281 Identities=10% Similarity=0.060 Sum_probs=182.9
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCc---------------eeEeeccCCCccEEEEEEeCC--EEEEEEcC
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEF---------------TECGRLKAKTSMVVAMEVSHD--RVYAAYGD 151 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~---------------~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d 151 (434)
......|++| ..+++|+|+.||.++|-.+.+. ..-+++.+|...|.-+.|+.+ .|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567889999 7899999999999999876431 123457889999999999986 67777779
Q ss_pred CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE
Q 046226 152 GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET 231 (434)
Q Consensus 152 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 231 (434)
|.|.||-+-.+.....+.- ....+.|.+++|+.||..+.....||.|.+=.++..+ +.-
T Consensus 93 GlIiVWmlykgsW~EEMiN--------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-Iwg 151 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN--------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWG 151 (1189)
T ss_pred ceEEEEeeecccHHHHHhh--------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecc
Confidence 9999998766554433310 1255679999999999999999999999887775433 222
Q ss_pred cccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC-----cceeEEEEEecccccCeEEEEEe--------cCCCE
Q 046226 232 IQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSE-----NQLHTLILTLTAKYSPVKTLTLT--------LDDGL 297 (434)
Q Consensus 232 ~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~ 297 (434)
-.........+.|++|. .++.+-.+|.+.++|....-. .........+......+..+.|. |+...
T Consensus 152 KeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 152 KELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred hhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCE
Confidence 11122234578899998 777778889999998641000 00001111111122235556653 47788
Q ss_pred EEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCC---------cEEEEeccCCCceeeEE
Q 046226 298 LYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADS---------TSRVWAREQDGRHTMLA 366 (434)
Q Consensus 298 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~ 366 (434)
|+++...|.+.|-.-.....+... ...-.+....|+ |..|+.++.|. .|.+|..-. ..+.
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~-----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----~i~g 302 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVV-----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----HIVG 302 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEE-----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----hheE
Confidence 999999999888753322222111 122356666775 66888877643 455554432 5667
Q ss_pred EeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 367 VLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 367 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
+++.....|++++|--. |-.++.+ .|+.|++=+++
T Consensus 303 tlkvpg~~It~lsWEg~---------gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 303 TLKVPGSCITGLSWEGT---------GLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred EEecCCceeeeeEEcCC---------ceEEEEE-ecceEEEEeec
Confidence 77777778888888655 3333333 35555554444
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=6.9e-10 Score=99.33 Aligned_cols=201 Identities=16% Similarity=0.196 Sum_probs=140.2
Q ss_pred EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE----ecCCCEEEEEecCCcEE
Q 046226 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI----NVSDDTLYSASLDKTIK 219 (434)
Q Consensus 144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~s~~~dg~i~ 219 (434)
+++....||.+++|+...++....+.... ...+.+...... -..........++.+ +.+...++-|...|.|.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-~~s~t~~~~~w~--L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIA-SLSGTCTYTKWG--LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccch-hccCcceeEEEE--EEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 78888899999999998776544442111 011111111110 000000000111111 12345678888999999
Q ss_pred EEEcCCCeeEEEcc--cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC
Q 046226 220 VWRIRDSKCIETIQ--AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG 296 (434)
Q Consensus 220 vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 296 (434)
+|++..++.-..+. .|.+.|.++.++.+- .|.+++.|+.+..|+.. ....+.........+.+++++||+.
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~------~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK------EKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc------cceeeeeeccCCCccceEEEcCCCC
Confidence 99999999887776 588999999988776 99999999999999876 5666777777888899999999999
Q ss_pred EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-------CCEEEE-ecCCCcEEEEeccCC
Q 046226 297 LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-------ANYVIS-GSADSTSRVWAREQD 359 (434)
Q Consensus 297 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~l~s-~~~dg~i~iwd~~~~ 359 (434)
.+++++ +.|++||+.+. +....+.+|.++|.+++|- |.++++ ...+..+.+|-++..
T Consensus 158 ~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 999886 68999998644 3445678999999999883 455554 445667888877763
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1.3e-09 Score=101.77 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=127.8
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---CeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG 186 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
..|.++|..... ...+..+...+...+|+|+ .++.++.+ ..|++||+.++......
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------------------ 230 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------------------ 230 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee------------------
Confidence 368888875433 4445556667889999998 56655543 57999998765332111
Q ss_pred cccccCcCCCeEEEEEecCCCEEEE-EecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CC--eE
Q 046226 187 KDKMMKHMGPITSIAINVSDDTLYS-ASLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD-DA--TV 259 (434)
Q Consensus 187 ~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg--~i 259 (434)
.+...+.+++|+||++.|+. .+.++ .|++||+.+++. ..+..+........|++++ .|+..+. ++ .|
T Consensus 231 -----~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~i 304 (417)
T TIGR02800 231 -----SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQI 304 (417)
T ss_pred -----cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceE
Confidence 24455667899999987764 44444 599999987754 3444455555677899998 6655443 44 46
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEE
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA 336 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~ 336 (434)
.++|+. . ... ..+..+........|+|++++++.+..++ .|.+||+...... .... ..+. .-..++
T Consensus 305 y~~d~~--~-~~~----~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--~l~~-~~~~-~~p~~s 373 (417)
T TIGR02800 305 YMMDAD--G-GEV----RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--VLTD-TGLD-ESPSFA 373 (417)
T ss_pred EEEECC--C-CCE----EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--EccC-CCCC-CCceEC
Confidence 666654 1 111 12222344567789999999999888776 7888888653221 1111 1111 112455
Q ss_pred eeCCEEEEecCCC---cEEEEecc
Q 046226 337 SVANYVISGSADS---TSRVWARE 357 (434)
Q Consensus 337 ~~~~~l~s~~~dg---~i~iwd~~ 357 (434)
.++++|+..+.++ .+++.+..
T Consensus 374 pdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 374 PNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CCCCEEEEEEeCCCcEEEEEEECC
Confidence 5677777666544 34454543
No 255
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=1.2e-08 Score=101.91 Aligned_cols=303 Identities=14% Similarity=0.121 Sum_probs=182.3
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEe----cCCCc--eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIW----KQPEF--TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST 160 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iw----d~~~~--~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~ 160 (434)
..+.|.++.+ +...++.+..+|.|.+. +..+. +.+.. -...|.+++|+|| .|+.++.++++.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 4567999998 88888899999999998 54432 33333 3567999999998 78888889988887532
Q ss_pred CCCCceeeEeeeccC-----------------CCCceeE-------EE---eccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226 161 WDNGVKHVKLATIPK-----------------TGGAVRN-------LI---VGKDKMMKHMGPITSIAINVSDDTLYSAS 213 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~-----------------~~~~~~~-------~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 213 (434)
-+.+....+..... .|...+. .. .....+. +...-..|+|-.||.+|++.+
T Consensus 151 -fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss 228 (928)
T PF04762_consen 151 -FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSS 228 (928)
T ss_pred -ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEE
Confidence 22222221111000 0000000 00 0011112 445667899999999999876
Q ss_pred c---C---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC---CCeEEEEecccccCcceeEEEEEecccc
Q 046226 214 L---D---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD---DATVRVWRRYFYSENQLHTLILTLTAKY 283 (434)
Q Consensus 214 ~---d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 283 (434)
. + ..|+||+-+ |....+-..-.+--.+++|.|.| ++++.-. ...|.+|..+ +..-...........
T Consensus 229 ~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN---GLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 229 VEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN---GLRHGEFTLRFDPEE 304 (928)
T ss_pred EEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC---CcEeeeEecCCCCCC
Confidence 4 2 479999965 66555544444455688999999 5655543 3567777644 223333333333456
Q ss_pred cCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC---CEEEEecCCCcEEEEecc---
Q 046226 284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA---NYVISGSADSTSRVWARE--- 357 (434)
Q Consensus 284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~--- 357 (434)
..|..+.|++++..|+....|. |.+|-.....--.+....+.. ...+..+.|+. ..|...+.+|.+..++..
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 6899999999999999987665 999986543211111111111 12233366653 355555555555444321
Q ss_pred -CCC-----ceeeEEEee-----------------------ccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 358 -QDG-----RHTMLAVLV-----------------------GHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 358 -~~~-----~~~~~~~~~-----------------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
.+. ..-.+..+. .-..+|.+++|+++ +..+++-..||.|.+|
T Consensus 383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~---------~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS---------NSRFAVLTSDGSLSIY 453 (928)
T ss_pred EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC---------CCeEEEEECCCCEEEE
Confidence 110 000111111 12467899999988 5669999999999999
Q ss_pred ecCCC
Q 046226 409 RVTRP 413 (434)
Q Consensus 409 ~~~~~ 413 (434)
.....
T Consensus 454 ~~~~~ 458 (928)
T PF04762_consen 454 EWDLK 458 (928)
T ss_pred EecCC
Confidence 96544
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.29 E-value=4.7e-10 Score=91.82 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=127.7
Q ss_pred CCcEEEEEcCCCeeEE--Ec-ccCccCeEEEEEcC---CC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226 215 DKTIKVWRIRDSKCIE--TI-QAHSEPINALVVAD---DG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV 286 (434)
Q Consensus 215 dg~i~vwd~~~~~~~~--~~-~~~~~~v~~~~~~~---~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 286 (434)
.|.+.+|++...+.+. .+ ......+..+.|.- ++ .++-+..+|.|.++.............+..........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4677888877655433 11 11234556666652 22 56777788999998755111111111111111111135
Q ss_pred EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee---CCEEEEecCCCcEEEEeccCCCcee
Q 046226 287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV---ANYVISGSADSTSRVWAREQDGRHT 363 (434)
Q Consensus 287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (434)
.++.|++.+..++++..+|.+.+-+.. ....+..+..+.|....+...|+ ++.+.+|++|+.+..||++..+. .
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYET--EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-F 201 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecc--eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-e
Confidence 578889999999999999999955533 23344445788999998888885 67999999999999999994431 2
Q ss_pred eEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 364 MLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 364 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
.....+-|...|.++.-+|.. +.+|+||+.|-.|++||.++-.
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~--------~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPK--------PTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeecceeeecceEEEecCCCC--------CceEEEeccccceeeeehhccc
Confidence 333366789999999888765 8899999999999999998543
No 257
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=1.9e-10 Score=94.78 Aligned_cols=263 Identities=15% Similarity=0.185 Sum_probs=164.2
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCce-----eEeeccCCC------------ccEEEEEEeCC----EEEE
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFT-----ECGRLKAKT------------SMVVAMEVSHD----RVYA 147 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~l~~~~~----~l~~ 147 (434)
..+.|+++.| .|.+|+||...|.|.+|.-+... ....+++|. ..|..+.|..+ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3567999999 68999999999999999754422 223355554 35778888654 6788
Q ss_pred EEcCCeEEEeecCCCCCce--eeEee---e--------------ccCCCCceeEEEeccc--cccCcCCCeEEEEEecCC
Q 046226 148 AYGDGKIRVWRSTWDNGVK--HVKLA---T--------------IPKTGGAVRNLIVGKD--KMMKHMGPITSIAINVSD 206 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~--~~~~~---~--------------~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 206 (434)
.+.|.+|++|.+....... .-.+. . .+.....-..+..... ....|.--|.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999886542110 00000 0 0000000011111111 224688889999999998
Q ss_pred CEEEEEecCCcEEEEEcCCCe---eEEEcccC-----ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeE--
Q 046226 207 DTLYSASLDKTIKVWRIRDSK---CIETIQAH-----SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHT-- 274 (434)
Q Consensus 207 ~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~-----~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-- 274 (434)
..++++. |=.|.+|+++-.. .+..++.| ..-|++..|+|.. .+.-.+..|.|++-|++...--....
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888886 7789999986432 22333333 3467888999877 77777888999999998211100000
Q ss_pred --------EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc------------cce--
Q 046226 275 --------LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT------------HAV-- 332 (434)
Q Consensus 275 --------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~v-- 332 (434)
-...+.+....|..+.|+++|+++++-+. -+|+|||++......... .-|. ..|
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi---~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI---PMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee---chHHHHHHHHHhhhhccceee
Confidence 01112233456888999999999887654 579999998665544322 1121 122
Q ss_pred -EEEEeeC--CEEEEecCCCcEEEEeccC
Q 046226 333 -MCLASVA--NYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 333 -~~~~~~~--~~l~s~~~dg~i~iwd~~~ 358 (434)
.-+.++| ..+++|+..+..-+|-..+
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eEEEEecCCcccccccccccceeeecccc
Confidence 2344554 4788888888777776443
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=4.1e-09 Score=98.50 Aligned_cols=230 Identities=13% Similarity=0.007 Sum_probs=134.5
Q ss_pred eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcC---CeEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGD---GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK 187 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
.|.++|...+. ...+..+...+....|+|+ .|+..+.+ ..|.+||+.+++.....
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------------------- 239 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------------------- 239 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-------------------
Confidence 47788876544 3445556778899999998 56655543 46888888765332111
Q ss_pred ccccCcCCCeEEEEEecCCCEEEE-EecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC--eEE
Q 046226 188 DKMMKHMGPITSIAINVSDDTLYS-ASLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA--TVR 260 (434)
Q Consensus 188 ~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i~ 260 (434)
...+.+....|+|||+.|+. ...+| .|++||+.+++.. .+..+........|+|++ .++..+ .+| .|.
T Consensus 240 ----~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 240 ----NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred ----CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 12233456899999998874 44444 6888999887643 454455566778999999 554444 444 455
Q ss_pred EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC-C--eEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD-G--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 337 (434)
++|+. .+ ..... .... .......|+|+|++|+....+ + .|.+||+....... .... .. ..-..++.
T Consensus 315 ~~d~~--~g-~~~~l--t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~--lt~~-~~-~~~p~~sp 383 (430)
T PRK00178 315 KVNVN--GG-RAERV--TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI--LTDT-SL-DESPSVAP 383 (430)
T ss_pred EEECC--CC-CEEEe--ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE--ccCC-CC-CCCceECC
Confidence 66654 11 11111 1111 223456899999998877643 3 57888876543221 1111 11 11124566
Q ss_pred eCCEEEEecCC-C--cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 338 VANYVISGSAD-S--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 338 ~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
+|+.++..+.+ | .|.++++... ....+..+.+.+...+|+|
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCCCccCC
Confidence 77766655443 3 4666666532 2233444555666677765
No 259
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.9e-09 Score=99.48 Aligned_cols=322 Identities=12% Similarity=0.069 Sum_probs=212.7
Q ss_pred ccceeeeEEEeeccccEEEEEE--------cC------CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-
Q 046226 79 SSSYRCISSVLKKDGQILCIAV--------GN------GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD- 143 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~~v~~~~~--------~~------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~- 143 (434)
..+.+.++++..|...|+.+.| .. -+||++...|.|.+||...+..+..+..|..++..++|-+.
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence 4567778888899999999999 11 26788888999999999999999999999999999999653
Q ss_pred -----EEEEEEcCCeEEEeecCCCCCceeeEeee----------cc-------CCCCc---------------eeEEEec
Q 046226 144 -----RVYAAYGDGKIRVWRSTWDNGVKHVKLAT----------IP-------KTGGA---------------VRNLIVG 186 (434)
Q Consensus 144 -----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~----------~~-------~~~~~---------------~~~~~~~ 186 (434)
.|++-.....+.+|+..+++......... +. ..++. ...+...
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 57777788899999988887654432110 00 00000 0000000
Q ss_pred cc--cc----------cCcCC---------CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEc
Q 046226 187 KD--KM----------MKHMG---------PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVA 245 (434)
Q Consensus 187 ~~--~~----------~~~~~---------~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 245 (434)
.+ .. ..+.. ....++|+|.-+.++-......+.++|++-..++....-..+.+.-+.+-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 00 00 00000 01234567766555555567889999999888888887777777788888
Q ss_pred CCC---eEEEEeCCCeEEEEecccccCccee-------------EEEE--------------------------------
Q 046226 246 DDG---VLYSASDDATVRVWRRYFYSENQLH-------------TLIL-------------------------------- 277 (434)
Q Consensus 246 ~~~---~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~~~-------------------------------- 277 (434)
|+. .|++.-.||.+.+|-.+........ ..+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 877 7999999999999965421100000 0000
Q ss_pred ----------------------------------------EecccccCeEEEEEec-----------CC-------CEEE
Q 046226 278 ----------------------------------------TLTAKYSPVKTLTLTL-----------DD-------GLLY 299 (434)
Q Consensus 278 ----------------------------------------~~~~~~~~v~~~~~~~-----------~~-------~~l~ 299 (434)
...+|.....+....| .+ .+++
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 0001222222222211 11 2688
Q ss_pred EEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC-EEEEec----------CCCcEEEEeccCCCceeeEEE-
Q 046226 300 GGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN-YVISGS----------ADSTSRVWAREQDGRHTMLAV- 367 (434)
Q Consensus 300 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~- 367 (434)
.|+..|+|.++|+.+. .....+..|...|.++.|-|+ .|++.+ .-+.+.+-|+++|-. +.++.
T Consensus 442 vGT~sGTV~vvdvst~----~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls-k~fR~l 516 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTN----AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS-KRFRGL 516 (1062)
T ss_pred eecCCceEEEEEecch----hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc-cccccC
Confidence 9999999999998643 333466789999999999876 344333 334678889998743 23332
Q ss_pred eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 368 LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 368 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
-+....+|+.+..+.. ++||+..-.|.-+.+||+++..
T Consensus 517 ~~~despI~~irvS~~---------~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSS---------GRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred CCCCcCcceeeeeccc---------CceEEEEecccchHHHhhccch
Confidence 3345678999999887 9999999999999999997543
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.5e-09 Score=93.65 Aligned_cols=269 Identities=10% Similarity=0.064 Sum_probs=166.8
Q ss_pred cEEEEEE--cCCEEEEE-----eCC-----CeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecC
Q 046226 94 QILCIAV--GNGFIYTG-----SDS-----NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRST 160 (434)
Q Consensus 94 ~v~~~~~--~~~~l~tg-----~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~ 160 (434)
.++++.| -|++|.|= ..+ -.+.+|+++++.....+......-++..|+.| .+++=-..+.+.+|++.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence 5677777 67777652 112 35779999986665555443333368889887 44444447889999987
Q ss_pred CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC--CEEEE-----EecCCcEEEEEcCCCeeEEEcc
Q 046226 161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD--DTLYS-----ASLDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~ 233 (434)
..+.+... -|...|..+.++|.+ ..+++ .+.-+.|+||.......-..+.
T Consensus 155 ~f~~~~~k-----------------------l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a 211 (566)
T KOG2315|consen 155 SFKTIQHK-----------------------LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA 211 (566)
T ss_pred Cccceeee-----------------------eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh
Confidence 64333222 277789999999873 23332 3445689999876322111110
Q ss_pred ---cCccCeEEEEEcCCC--eEEEE--eCC---------CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCE
Q 046226 234 ---AHSEPINALVVADDG--VLYSA--SDD---------ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGL 297 (434)
Q Consensus 234 ---~~~~~v~~~~~~~~~--~l~s~--~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 297 (434)
-....-..+.|++.| +|+.+ .-| ..+++.++. ......--...++|.++.|+++++-
T Consensus 212 ~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-------g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 212 NKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-------GESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred hccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-------CceEEEecCCCCCceEEEECCCCCE
Confidence 011223357788766 33333 223 356666544 1111222234689999999999976
Q ss_pred EEE--EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC---CCcEEEEeccCCCceeeEEEeec
Q 046226 298 LYG--GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA---DSTSRVWAREQDGRHTMLAVLVG 370 (434)
Q Consensus 298 l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~ 370 (434)
+++ |-.-..+.|||++.. ..+ . -..++-.++-|+ |++++.++- -|.|.|||+.+. +++..+..
T Consensus 285 F~VvyGfMPAkvtifnlr~~---~v~--d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a 354 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGK---PVF--D--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKA 354 (566)
T ss_pred EEEEEecccceEEEEcCCCC---EeE--e--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhcccccc
Confidence 655 556778999998521 111 1 223344555554 777777665 479999999985 67776655
Q ss_pred cccceeEEEEeecccCCCCCCcccEEEEee------cCCeEEEEecCCC
Q 046226 371 HRGPIRCAIAFLGRFGEETEDEYCTICTGS------LDGVLKMWRVTRP 413 (434)
Q Consensus 371 h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~------~Dg~v~iw~~~~~ 413 (434)
-.. +-..|+|+ |++|+|+. .|+.++||++.-.
T Consensus 355 ~~t--t~~eW~Pd---------Ge~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 355 ANT--TVFEWSPD---------GEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCc--eEEEEcCC---------CcEEEEEeccccEEecCCeEEEEecCc
Confidence 443 44899999 99998876 5889999998743
No 261
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=4.6e-09 Score=97.91 Aligned_cols=230 Identities=14% Similarity=-0.008 Sum_probs=130.0
Q ss_pred eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-CC--eEEEeecCCCCCceeeEeeeccCCCCceeEEEecc
Q 046226 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DG--KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGK 187 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
.|.++|..... ...+..+...+.+..|+|| .|+..+. ++ .|.+||+.+++.....
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------------------- 258 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------------------- 258 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec-------------------
Confidence 66677765443 3345556678889999998 5555543 33 5788887655321111
Q ss_pred ccccCcCCCeEEEEEecCCCEEEE-EecCCc--EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-EeCCCe--EE
Q 046226 188 DKMMKHMGPITSIAINVSDDTLYS-ASLDKT--IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-ASDDAT--VR 260 (434)
Q Consensus 188 ~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~~~dg~--i~ 260 (434)
...+.....+|+|||+.|+. ...+|. |+++|+.+++. ..+..+........|+||+ .|+. ...++. |.
T Consensus 259 ----~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 259 ----SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred ----CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 11222346789999998875 455664 88889887764 4444455566788999999 5544 444454 44
Q ss_pred EEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 337 (434)
++|+. .. ..... ...+ ......+|+|||++|+..+. ++ .|.++|+...... .... .....-..++.
T Consensus 334 ~~dl~--~g-~~~~L--t~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~--~lt~--~~~d~~ps~sp 402 (448)
T PRK04792 334 RVNLA--SG-KVSRL--TFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ--VLTS--TRLDESPSVAP 402 (448)
T ss_pred EEECC--CC-CEEEE--ecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE--EccC--CCCCCCceECC
Confidence 44543 11 11111 1122 22345689999998877654 34 4555666543321 1111 11111124566
Q ss_pred eCCEEEEec-CCC--cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 338 VANYVISGS-ADS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 338 ~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
+|+.|+..+ .++ .+++++.+. .....+..+.+.+...+|+|
T Consensus 403 dG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 403 NGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCC
Confidence 777665544 344 366677643 33444555556667777776
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1e-07 Score=80.97 Aligned_cols=273 Identities=9% Similarity=0.104 Sum_probs=172.1
Q ss_pred CCeEEEecCCCc--ee-EeeccCCCccEEEEEEeCC--EEEEEEc---CCeEEEeecCCC-CCceeeEeeeccCCCCcee
Q 046226 111 SNVIRIWKQPEF--TE-CGRLKAKTSMVVAMEVSHD--RVYAAYG---DGKIRVWRSTWD-NGVKHVKLATIPKTGGAVR 181 (434)
Q Consensus 111 dg~i~iwd~~~~--~~-~~~~~~~~~~v~~l~~~~~--~l~~~s~---dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 181 (434)
+.-|++|++.+. +. ...+-.+.+..+-|+|+++ .|+++.. +|.|..|.++.. .....+....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--------- 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--------- 85 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---------
Confidence 468999998742 21 1122345667888999997 5777755 577888887643 2222221100
Q ss_pred EEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCC-CeeEE--EcccCccC----------eEEEEEcCC
Q 046226 182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRD-SKCIE--TIQAHSEP----------INALVVADD 247 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~ 247 (434)
....+-..+++++++++++++.. .|.|.++-++. |.... .+..|.+. +....+.|+
T Consensus 86 ----------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~ 155 (346)
T COG2706 86 ----------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD 155 (346)
T ss_pred ----------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC
Confidence 12223388999999999998865 57899999865 43211 12224444 888999999
Q ss_pred C-eEEEEe-CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccccCc
Q 046226 248 G-VLYSAS-DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQYGGA 324 (434)
Q Consensus 248 ~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~ 324 (434)
+ +|++.. .--.|.+|++.. +.-........ ......+.|.|+|++++.++.++ +++|.+|.........+..+.
T Consensus 156 ~~~l~v~DLG~Dri~~y~~~d--g~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 156 GRYLVVPDLGTDRIFLYDLDD--GKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CCEEEEeecCCceEEEEEccc--Ccccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 9 666554 335699999872 21111111222 44567889999999999887766 899999998764333322211
Q ss_pred -------ccCcc-cceEEEEeeCCEEEEecC-CCcEEEEeccCCC-ceeeEEEeeccccceeEEEEeecccCCCCCCccc
Q 046226 325 -------LQGHT-HAVMCLASVANYVISGSA-DSTSRVWAREQDG-RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC 394 (434)
Q Consensus 325 -------~~~~~-~~v~~~~~~~~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 394 (434)
+.+.. ..-..+..+|++|.++.. ...|-+|.+.... ....+.....+....+...+.++ ++
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~---------g~ 303 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS---------GR 303 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC---------CC
Confidence 11111 122334456888887754 3478888887653 34444455555555788888888 88
Q ss_pred EEEEeecC-CeEEEEecCCCC
Q 046226 395 TICTGSLD-GVLKMWRVTRPK 414 (434)
Q Consensus 395 ~l~s~~~D-g~v~iw~~~~~~ 414 (434)
+|+.+..| ..|.+|..+...
T Consensus 304 ~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 304 FLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEccCCCcEEEEEEcCCC
Confidence 88888865 469999887544
No 263
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.24 E-value=2.3e-10 Score=92.02 Aligned_cols=235 Identities=13% Similarity=0.203 Sum_probs=142.6
Q ss_pred EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccC--CCccEEEEEE------------eCCEEEEEEcCCeEEEeec
Q 046226 95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKA--KTSMVVAMEV------------SHDRVYAAYGDGKIRVWRS 159 (434)
Q Consensus 95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~------------~~~~l~~~s~dg~i~vwd~ 159 (434)
|+.+.+ ....|+++..++.+.....-.+.+....+. ..++..+++. ..+.++++..||.+.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 666777 677888888887777666544433322211 1122233332 2237899999999999987
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-----CCcEEEEEcCCCeeEEEccc
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----DKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~ 234 (434)
+........ +.. .|.+. .+.++...++.+.++.. -+..+.|+++..+.+..-..
T Consensus 119 ~~~~~~~~~-i~~-------------------~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 119 DKDLALMSR-IPS-------------------IHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred hHHHhhhhh-ccc-------------------ccccc-cccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 642111100 000 01111 11122233444444321 23466677654433222222
Q ss_pred CccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEE
Q 046226 235 HSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWH 311 (434)
Q Consensus 235 ~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d 311 (434)
....|.+++-+|.. .+++|+.||.+-+||.+ ....+...+..|+.++..+.|+| ++..|+++++||.+-.||
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~r-----n~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDAR-----NVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcc-----cccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 33458899988876 88899999999999998 22344556778999999999999 678999999999999999
Q ss_pred cCccccc--------------------ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226 312 KGWFSAQ--------------------LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA 355 (434)
Q Consensus 312 ~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 355 (434)
..+.-.. .+....+......|..+...|..|++|++-+.|++++
T Consensus 253 as~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 253 ASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 7631110 0111122233345566666788999999888888875
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=4.6e-11 Score=119.15 Aligned_cols=190 Identities=13% Similarity=0.185 Sum_probs=148.5
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN 270 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~ 270 (434)
+-..|.++.=+|...+.++|+.||.|++|.-..++.+..++. ....|+.+.|+.+| .+..+..||.+.+|...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----- 2281 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----- 2281 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-----
Confidence 567788898899999999999999999999988887777653 23789999999888 99999999999999754
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC--EEEEe
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN--YVISG 345 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~ 345 (434)
.++....+.|......+.|-. ..+++++ .++.+.+||....... .+.. ..|.+.++++++-++ .|++|
T Consensus 2282 --pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2282 --PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred --CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-ceee--eecCCCceEEEEcCcceEEEec
Confidence 456667778888888888865 5566653 4789999996433222 2222 578888888888754 89999
Q ss_pred cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 346 SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 346 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+.+|.|++||++.. +....++. +. . ..++++|+..|.++||++.....+
T Consensus 2355 gr~G~v~l~D~rqr---ql~h~~~~---------~~-~---------~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQR---QLRHTFQA---------LD-T---------REYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred CCcCcEEEeehHHH---HHHHHhhh---------hh-h---------hheeeccCcccceEEEEccccchh
Confidence 99999999999875 44444433 22 2 678999999999999999876433
No 265
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=5.6e-09 Score=97.48 Aligned_cols=193 Identities=16% Similarity=0.050 Sum_probs=117.6
Q ss_pred CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCC--eEEEEec
Q 046226 192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDA--TVRVWRR 264 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg--~i~iwd~ 264 (434)
.+...+...+|+|++++|+.+..+ ..|++||+.+++... +..+...+.++.|+|++ .|+ +.+.++ .|.+||+
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 355678889999999999877644 479999998876533 33355566778999999 454 455444 5778877
Q ss_pred ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEE--eeC
Q 046226 265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLA--SVA 339 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--~~~ 339 (434)
.. .. ...+..+........|+|+++.|+..+. ++ .|+++|+...... .+..+...+.... .++
T Consensus 266 ~~---~~----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-----~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 266 DG---KQ----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-----RLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CC---CC----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----EeecCCCCccCeEECCCC
Confidence 51 11 1122223334456789999998876654 33 5777776533211 1111222333344 457
Q ss_pred CEEEEecCCC---cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC---eEEEEecC
Q 046226 340 NYVISGSADS---TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG---VLKMWRVT 411 (434)
Q Consensus 340 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg---~v~iw~~~ 411 (434)
++++.++.++ .|.+||+.++. ... +... .......|+|+ +++|+..+.++ .+++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~-~~~---l~~~-~~~~~p~~spd---------g~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGG-ERV---LTDT-GLDESPSFAPN---------GRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCC-eEE---ccCC-CCCCCceECCC---------CCEEEEEEeCCCcEEEEEEECC
Confidence 7888777665 78889988742 122 2221 22344578888 77777776654 35555543
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=2.6e-07 Score=78.58 Aligned_cols=257 Identities=14% Similarity=0.143 Sum_probs=156.5
Q ss_pred ccccEEEEEE--cCCEEEEEeCC---CeEEEecCCC--ceeE--eeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEee
Q 046226 91 KDGQILCIAV--GNGFIYTGSDS---NVIRIWKQPE--FTEC--GRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWR 158 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~d---g~i~iwd~~~--~~~~--~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd 158 (434)
+.+..+-|++ +++.|+++..+ |.|..|.+.. |++. ........+-..++++++ .++++.. .|.|.++-
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence 5556777888 67788887654 6677766553 4432 222222333377888886 5666654 79999998
Q ss_pred cCCCCCceee-EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcc---
Q 046226 159 STWDNGVKHV-KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQ--- 233 (434)
Q Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~--- 233 (434)
++....+... ....-...+.- ......-+....+.|++++|++.+- --.|.+|++..|+....-.
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~----------~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v 187 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPH----------ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV 187 (346)
T ss_pred cccCCccccceeeeecCCCCCC----------ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc
Confidence 8765443332 11110000000 0011122788899999999998753 2369999999776432211
Q ss_pred cCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEE---ec---ccccCeEEEEEecCCCEEEEEcC-C
Q 046226 234 AHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILT---LT---AKYSPVKTLTLTLDDGLLYGGCT-D 304 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~---~~~~~v~~~~~~~~~~~l~~~~~-d 304 (434)
.....-+.|.|+|++ ..+..--+++|.+|..... ......+.. +. ........|.++++|++|+++.. .
T Consensus 188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ 265 (346)
T COG2706 188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH 265 (346)
T ss_pred CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC
Confidence 245567899999999 3445557899999988732 112222221 11 12346778999999999998754 3
Q ss_pred CeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCC-CcEEEEeccCC
Q 046226 305 GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSAD-STSRVWAREQD 359 (434)
Q Consensus 305 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d-g~i~iwd~~~~ 359 (434)
..|.+|.+......+.+......+......+.+ ++++|+++..| ..|.+|.++..
T Consensus 266 dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 266 DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 478888887665555544433333333444444 57888877765 47888877653
No 267
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=1.9e-10 Score=105.31 Aligned_cols=292 Identities=15% Similarity=0.199 Sum_probs=182.0
Q ss_pred cccEEEEEE--cCCEEEEEeCCCeEEEecCCC-ceeEeeccC-CCccEEEEEEeCC----EEEEEEcCCeEEEeecCCCC
Q 046226 92 DGQILCIAV--GNGFIYTGSDSNVIRIWKQPE-FTECGRLKA-KTSMVVAMEVSHD----RVYAAYGDGKIRVWRSTWDN 163 (434)
Q Consensus 92 ~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~-~~~~v~~l~~~~~----~l~~~s~dg~i~vwd~~~~~ 163 (434)
.+.+.++.. .|+-+|.++.-|.. +-|+.. +....-+.. ..-.|-.+.|++. +-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 455666666 67778888876644 445544 222222211 1224667778764 44555555566788876432
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC-CEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEE
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD-DTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINA 241 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~ 241 (434)
.... .- .+.+|...|+.+.|+|.. ..+++++-|..+..||+++. .++..+..-...-..
T Consensus 103 ~~aI-------------ef------~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq 163 (1081)
T KOG0309|consen 103 SNAI-------------EF------VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ 163 (1081)
T ss_pred ccce-------------EE------EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence 2111 11 113799999999999865 56889999999999999875 355666555566778
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
++|+-.. .+.+.+....|++||++ ........+.+|...+..++|.. -...+++.+.||+|+.||........
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r-----~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLR-----KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred eeecccCcchhhhccCCceEEEecc-----CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 8998655 67777788889999998 33345556666878888888865 33568889999999999986544333
Q ss_pred cccCcccCcccceEEEEe----eCCEEEEe---------cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeeccc-
Q 046226 320 QYGGALQGHTHAVMCLAS----VANYVISG---------SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRF- 385 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~----~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 385 (434)
+... ....+|+--.+ .|.++.-- --+.....|+..++ .+++..+.||.+.|....|-...-
T Consensus 239 ~~~v---tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 239 KRTV---TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKEC 313 (1081)
T ss_pred ceec---cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhhhhcccc
Confidence 2211 11222221111 11122111 11223334444433 378999999999987766643210
Q ss_pred CCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 386 GEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 386 ~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
..++....-.|+|-+.|..+++|-+.+.
T Consensus 314 ~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cCCCCccceeEEEeecCCceEeeeccHH
Confidence 1112222558999999999999998753
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=5.6e-08 Score=85.14 Aligned_cols=169 Identities=12% Similarity=0.057 Sum_probs=120.7
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC--CEEEEEEcCC-eEEEeecCCCCCceeeEeeeccCCC
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH--DRVYAAYGDG-KIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
+|++++..+. |...|.+...+-.+.. +|...|.-..+.. +.++.|..|| .+-|+|..+++..+..
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--------- 398 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--------- 398 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---------
Confidence 7888888885 6677766555444432 4556676666544 4889999998 8999998766433322
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD 256 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d 256 (434)
+.-+.|.++..+++|++++++.....|.+.|+++++....-+...+-|+.+.|+|++ +++-+--+
T Consensus 399 --------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 399 --------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred --------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence 467789999999999999999999999999999998766666677899999999999 77766555
Q ss_pred ----CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226 257 ----ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 257 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 302 (434)
..|+++|+. +. + +.......+.=.+=+|.|++++|.--+
T Consensus 465 gy~tq~Iklydm~---~~---K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 465 GYYTQSIKLYDMD---GG---K-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeeeeEEEEecC---CC---e-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 468999986 11 1 111122222223457888888776543
No 269
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=4e-08 Score=90.62 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=164.7
Q ss_pred EcCCEEEEEeCCCeEEEecCCCceeEeeccCCCc----------cE-EEEEEeCCEEEEEEcCCeEEEeecCCCCCceee
Q 046226 100 VGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS----------MV-VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHV 168 (434)
Q Consensus 100 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----------~v-~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~ 168 (434)
+.++.+++++.+|.|.-+|..+++.+........ .+ ..+....+.++.++.+|.+..+|.++++.....
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 3677888888899999999999998876543220 11 123455678888999999999999888877766
Q ss_pred EeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe-----EEEE
Q 046226 169 KLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI-----NALV 243 (434)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~ 243 (434)
..... ....++ + .+..++.+..+|.|..+|.++|+.+..+......+ ..-.
T Consensus 147 ~~~~~------------------~~ssP~----v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~ 202 (394)
T PRK11138 147 KVAGE------------------ALSRPV----V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPA 202 (394)
T ss_pred cCCCc------------------eecCCE----E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCE
Confidence 42110 011111 1 24567778889999999999999988876431111 1111
Q ss_pred EcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEeccccc---CeEEEEEec--CCCEEEEEcCCCeEEEEEcCccccc
Q 046226 244 VADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYS---PVKTLTLTL--DDGLLYGGCTDGYIHYWHKGWFSAQ 318 (434)
Q Consensus 244 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 318 (434)
.. ++.++.++.+|.+..+|... +............... ....+..+| .+..+++++.+|.+..+|..+.+..
T Consensus 203 v~-~~~v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 203 TA-FGGAIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred EE-CCEEEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 11 34667778888888888762 2222221110000000 001111122 3566777888999999998766554
Q ss_pred ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeecccCCCCCCcccEEE
Q 046226 319 LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLGRFGEETEDEYCTIC 397 (434)
Q Consensus 319 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~ 397 (434)
.+.. +. ....+...++.++.++.+|.+..+|..++. .+-....-. ....+..+. +.+|+
T Consensus 280 W~~~--~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v~-----------~g~l~ 339 (394)
T PRK11138 280 WKRE--YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVLY-----------NGYLV 339 (394)
T ss_pred Eeec--CC----CccCcEEECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEEE-----------CCEEE
Confidence 4431 11 112345568888888999999999998873 322211101 111222222 45788
Q ss_pred EeecCCeEEEEecCCCCcc
Q 046226 398 TGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 398 s~~~Dg~v~iw~~~~~~~~ 416 (434)
.++.||.|...|..+++.+
T Consensus 340 v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEeCCCEEEEEECCCCCEE
Confidence 8899999999999888754
No 270
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=3.8e-08 Score=90.78 Aligned_cols=266 Identities=12% Similarity=0.083 Sum_probs=162.7
Q ss_pred EEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
...++.++.++.+|.+..+|.++++.+.+.+........-....+.++.++.++.+..+|..+++.+.........
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---- 192 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS---- 192 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc----
Confidence 3467778888899999999999999988776543322223344568888888999999999988877666421000
Q ss_pred ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCcc-------CeEEEEEc---CCC
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSE-------PINALVVA---DDG 248 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~---~~~ 248 (434)
+ ...+...++. .+..++.++.+|.+..+|..+|+.+........ ....+..+ .++
T Consensus 193 ----~-----~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~ 257 (394)
T PRK11138 193 ----L-----TLRGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG 257 (394)
T ss_pred ----c-----cccCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC
Confidence 0 0001112221 134566777889999999999987765432110 00111111 145
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
.++.++.+|.+..+|+. .+....+.. . .....+. ..+..++.++.+|.+..+|..+.+....... . .+
T Consensus 258 ~vy~~~~~g~l~ald~~--tG~~~W~~~--~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~ 325 (394)
T PRK11138 258 VVYALAYNGNLVALDLR--SGQIVWKRE--Y----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD-L-LH 325 (394)
T ss_pred EEEEEEcCCeEEEEECC--CCCEEEeec--C----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc-c-CC
Confidence 77778889999999887 222222211 1 1111122 2467788888999999999876654433211 1 11
Q ss_pred ccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE-EEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 329 THAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC-AIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 329 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
.........+.+|+.++.||.|++.|..++ +.+...+-....+.+ -.+. +..|+.++.||.|+.
T Consensus 326 -~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG---~~~~~~~~~~~~~~s~P~~~-----------~~~l~v~t~~G~l~~ 390 (394)
T PRK11138 326 -RLLTAPVLYNGYLVVGDSEGYLHWINREDG---RFVAQQKVDSSGFLSEPVVA-----------DDKLLIQARDGTVYA 390 (394)
T ss_pred -CcccCCEEECCEEEEEeCCCEEEEEECCCC---CEEEEEEcCCCcceeCCEEE-----------CCEEEEEeCCceEEE
Confidence 112223345788899999999999999988 455444333222322 1222 447888899999988
Q ss_pred Eec
Q 046226 408 WRV 410 (434)
Q Consensus 408 w~~ 410 (434)
+++
T Consensus 391 ~~~ 393 (394)
T PRK11138 391 ITR 393 (394)
T ss_pred EeC
Confidence 775
No 271
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=2e-08 Score=81.37 Aligned_cols=239 Identities=11% Similarity=-0.071 Sum_probs=150.6
Q ss_pred EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-CCCEEEEEecCCcEEEEE
Q 046226 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-SDDTLYSASLDKTIKVWR 222 (434)
Q Consensus 144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd 222 (434)
.|+.|+.-|...+|...+.+.....-- .|...|+-+.=.. ....+..++.|.++++.+
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd---------------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCD---------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred EEEeccccceeeeecccCcccceeeec---------------------ccccchhhhhhhcccccceeeccCCcceeEEE
Confidence 788888999999998875543322210 1222222111101 123466778888888888
Q ss_pred cCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226 223 IRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG 301 (434)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 301 (434)
++.+..........-.+.++++++++ ++++.+....|..|.+.... ..............-.+..|+.....+|++
T Consensus 145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s---ey~~~~~~a~t~D~gF~~S~s~~~~~FAv~ 221 (344)
T KOG4532|consen 145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES---EYIENIYEAPTSDHGFYNSFSENDLQFAVV 221 (344)
T ss_pred EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc---ceeeeeEecccCCCceeeeeccCcceEEEE
Confidence 86544322222222338899999999 88888898999999887221 111112333444556778899999999999
Q ss_pred cCCCeEEEEEcCcccccccc-cCcccCcccceEEEEee-C---CEEEEecCCCcEEEEeccCCCceeeEEEee----ccc
Q 046226 302 CTDGYIHYWHKGWFSAQLQY-GGALQGHTHAVMCLASV-A---NYVISGSADSTSRVWAREQDGRHTMLAVLV----GHR 372 (434)
Q Consensus 302 ~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~h~ 372 (434)
..||.+.|||++........ ......|.+.+..+.|+ + ++|...-.-+.+.+-|+++....+.+.... .|.
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~ 301 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN 301 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence 99999999999876544433 23445688899888887 2 255555556789999999985444443221 222
Q ss_pred -cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 373 -GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 373 -~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
..|....|+.+ +.-+.+..++ .+.=|++.+..+.
T Consensus 302 tq~ifgt~f~~~---------n~s~~v~~e~-~~ae~ni~srsR~ 336 (344)
T KOG4532|consen 302 TQHIFGTNFNNE---------NESNDVKNEL-QGAEYNILSRSRF 336 (344)
T ss_pred ccccccccccCC---------Ccccccccch-hhheeecccccee
Confidence 33666666655 4555555544 4556777665543
No 272
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=2.8e-08 Score=92.96 Aligned_cols=196 Identities=16% Similarity=0.052 Sum_probs=117.0
Q ss_pred CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCC--eEEEEec
Q 046226 192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDA--TVRVWRR 264 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg--~i~iwd~ 264 (434)
.+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|+| .|+ +...+| .|.+||+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366778999999999998876543 369999998886533 33334455678999999 554 555555 5777787
Q ss_pred ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226 265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY 341 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 341 (434)
.. ... ..+..+........|+|||+.|+..+. +| .|+++|+....... + ...+.......++.+|++
T Consensus 275 ~~---~~~----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l--t~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 275 AS---RQL----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V--TFVGNYNARPRLSADGKT 344 (430)
T ss_pred CC---CCe----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e--ecCCCCccceEECCCCCE
Confidence 61 111 122333344566789999998776553 33 56667765433211 1 111222222345566777
Q ss_pred EEEecC-CC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-C--eEEEEecCC
Q 046226 342 VISGSA-DS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-G--VLKMWRVTR 412 (434)
Q Consensus 342 l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g--~v~iw~~~~ 412 (434)
|+..+. ++ .|.+||+.++.. ..+.. ........|+|+ |++|+..+.+ | .|.++++..
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spd---------g~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPN---------GTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCC---------CCEEEEEEecCCceEEEEEECCC
Confidence 766554 33 588889887632 22221 112224578887 7777766543 3 466667653
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2.2e-10 Score=101.59 Aligned_cols=277 Identities=13% Similarity=0.109 Sum_probs=177.1
Q ss_pred CcccccCCCCCCCCCCCCCccCCCCCCCccccee------------eeEEEeeccccEEEEEE--cCCEEEEEeCCCeEE
Q 046226 50 PISLHTSPLSSPRHPFNPTAAAGSSSPETSSSYR------------CISSVLKKDGQILCIAV--GNGFIYTGSDSNVIR 115 (434)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~ 115 (434)
...+|...+.....-.+...+.++++|++++.|. |..++..|+.+|..+.| +.++++ +.||.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCcce
Confidence 4567777776665666777888899999988765 56778899999999999 555665 4588999
Q ss_pred EecCCCceeEeecc-----CCCccEEEEEE-eCCE-EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226 116 IWKQPEFTECGRLK-----AKTSMVVAMEV-SHDR-VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD 188 (434)
Q Consensus 116 iwd~~~~~~~~~~~-----~~~~~v~~l~~-~~~~-l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
+||.--+..+.... +..+.|.++.- +... ++.++...+|+++|.+..+....+++...+
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~-------------- 873 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP-------------- 873 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC--------------
Confidence 99987776665332 12233444432 1123 344477999999999988887777664333
Q ss_pred cccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEE-Eecccc
Q 046226 189 KMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRV-WRRYFY 267 (434)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~i-wd~~~~ 267 (434)
+.+..+.+++..+.|++++++-.+|+|.+.|.++|+.+..++.-......++--.|..++....|..+.+ |-..
T Consensus 874 ---~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhal-- 948 (1034)
T KOG4190|consen 874 ---GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHAL-- 948 (1034)
T ss_pred ---CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhc--
Confidence 3556789999999999999999999999999999999988876555555555544557777778888888 7432
Q ss_pred cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcc--cCcccceEEEEee--CCEEE
Q 046226 268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGAL--QGHTHAVMCLASV--ANYVI 343 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~ 343 (434)
.............+..-+ ..-|.-|+++.....+.+|.-.........+..+ ....+..+++++- +..++
T Consensus 949 ----dgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen 949 ----DGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred ----CCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhh
Confidence 111111111111111111 1135567777777777887522111111100011 1122344555543 34566
Q ss_pred EecCCCcEEE
Q 046226 344 SGSADSTSRV 353 (434)
Q Consensus 344 s~~~dg~i~i 353 (434)
.|...|.|.+
T Consensus 1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred ccCCCCceee
Confidence 7888887765
No 274
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=4.8e-09 Score=96.93 Aligned_cols=286 Identities=7% Similarity=0.025 Sum_probs=183.8
Q ss_pred EEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--------------EEEEEEcCCeEEEeec
Q 046226 95 ILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--------------RVYAAYGDGKIRVWRS 159 (434)
Q Consensus 95 v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--------------~l~~~s~dg~i~vwd~ 159 (434)
-.++.| .+.++|-|+. ..|.+-|..+.+.+..+..|...|+.+.|.|. .++++...|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 456677 6778888875 57888899999999999999999999999762 3445555799999998
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---C-CEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---D-DTLYSASLDKTIKVWRIRDSKCIETIQAH 235 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 235 (434)
.....+..+. .|.+++.+++|-+. . ..|++-....+|.+|+..+|+.+......
T Consensus 97 ~~~s~~~~l~----------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 97 VLASVINWLS----------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred hhhhhhhhhc----------------------CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 7665544442 58889999999763 3 45666677889999999999999988877
Q ss_pred ccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcc-eeEEEEEeccccc-------------------------CeE
Q 046226 236 SEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQ-LHTLILTLTAKYS-------------------------PVK 287 (434)
Q Consensus 236 ~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~-------------------------~v~ 287 (434)
.....|+.+.|-. .+..-+..|.+.+-+.-...... ..+..+....|.. ...
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 7788889998865 66666677777777653211111 1111111111111 012
Q ss_pred EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCC-----
Q 046226 288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDG----- 360 (434)
Q Consensus 288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~----- 360 (434)
.++|+|.-+.++.......+.++|++-....... .++.....+..+-+++ +.|++.-.||.+.+|-.+...
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~~~l~vv--pier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhhceeEEE--EeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 3567886666666666778999998643322221 1222223445555554 489999999999999766521
Q ss_pred -----------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 361 -----------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 361 -----------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
+..++...+ .-.+...+..|.. ...++.--.+|.+.+|++.+++.
T Consensus 313 ~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~--------~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVHVVRPME--EFRPVIGASCPST--------PSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred cchhhccccccceEEEeech--hcccceeecCCCC--------hhhhhhhhhcchhHHHhhhcCCc
Confidence 111111111 1112222233321 33455555688899999998764
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.14 E-value=3.6e-08 Score=84.40 Aligned_cols=227 Identities=16% Similarity=0.098 Sum_probs=134.2
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE 230 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 230 (434)
+|.|..||..+++.+....+.. .. ....+. ..+++..+++++.++.|..||..+|+.+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-------------------~~-~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-------------------GI-GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLW 60 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-------------------SC-SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCC-------------------CC-CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 6889999988777776664310 01 111211 22357788888899999999999999988
Q ss_pred EcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEE
Q 046226 231 TIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYW 310 (434)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 310 (434)
.+... ..+.......++.++.+..++.|+.+|.. .+.........................+..++++..++.|..+
T Consensus 61 ~~~~~-~~~~~~~~~~~~~v~v~~~~~~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 137 (238)
T PF13360_consen 61 RFDLP-GPISGAPVVDGGRVYVGTSDGSLYALDAK--TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVAL 137 (238)
T ss_dssp EEECS-SCGGSGEEEETTEEEEEETTSEEEEEETT--TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEE
T ss_pred Eeecc-ccccceeeecccccccccceeeeEecccC--CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEE
Confidence 87752 22222223345577777788899999976 3333333211111111112222333347888889889999999
Q ss_pred EcCcccccccccCcccCccc-------ceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 311 HKGWFSAQLQYGGALQGHTH-------AVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 311 d~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
|+.+.+...........-.. ....+.+.+..++.++.++.+..+|+.++ +.+.... ...+..+ ....
T Consensus 138 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~~-~~~~ 211 (238)
T PF13360_consen 138 DPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYSL-PSVD 211 (238)
T ss_dssp ETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECEC-EECC
T ss_pred ecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCC---CEEEEec--CCCccCC-ceee
Confidence 98877665544321111011 11333445557777887886444499988 3332222 2222221 2233
Q ss_pred ccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 384 RFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 384 ~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+..|+.++.|+.|..||+.+++..
T Consensus 212 ---------~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 212 ---------GGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ---------CTEEEEEETTTEEEEEETTTTEEE
T ss_pred ---------CCEEEEEeCCCEEEEEECCCCCEE
Confidence 667777779999999999998753
No 276
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=8.8e-08 Score=88.66 Aligned_cols=236 Identities=14% Similarity=-0.021 Sum_probs=129.7
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--E--E-EEEEcCC--eEEEeecCCCCCceeeEeeeccCCCCceeEEE
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--R--V-YAAYGDG--KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLI 184 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~--l-~~~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
..|.+.|...+. ...+......+..=+|+|| . + ++...+| .|.+.++..++.....
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt---------------- 227 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL---------------- 227 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee----------------
Confidence 367677765443 3344445556677799998 3 2 2333344 4666676654332221
Q ss_pred eccccccCcCCCeEEEEEecCCCEEEEEec-CC----cEEEEEcCCC---eeEEEcccCccCeEEEEEcCCC-eEEEEe-
Q 046226 185 VGKDKMMKHMGPITSIAINVSDDTLYSASL-DK----TIKVWRIRDS---KCIETIQAHSEPINALVVADDG-VLYSAS- 254 (434)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg----~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~s~~- 254 (434)
...+.....+|+|||+.|+..+. +| .+..|++..+ +................|+||| .|+..+
T Consensus 228 -------~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~ 300 (428)
T PRK01029 228 -------ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN 300 (428)
T ss_pred -------cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC
Confidence 13333456799999998886543 22 3444777652 3333333333345678999999 555544
Q ss_pred CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccc
Q 046226 255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHA 331 (434)
Q Consensus 255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~ 331 (434)
.+|...+|.+....... ....+......+....|+|||+.|+....+ ..|.+||+......... .....
T Consensus 301 ~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-----~~~~~ 372 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-----TSPEN 372 (428)
T ss_pred CCCCceEEEEECccccc---ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-----CCCCC
Confidence 56766666543111111 122223333466788999999988876543 47899998655432111 11112
Q ss_pred eEEEEe--eCCEEEE-ecC--CCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 332 VMCLAS--VANYVIS-GSA--DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 332 v~~~~~--~~~~l~s-~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
+....| +|+.|+. ... +..|+++|+..+.. ..+ ....+.+...+|+|-
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~L---t~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKI---VIGSGEKRFPSWGAF 425 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEe---ecCCCcccCceecCC
Confidence 333444 5676654 332 35788889877532 222 223444566777764
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.09 E-value=5.8e-10 Score=102.27 Aligned_cols=229 Identities=13% Similarity=0.152 Sum_probs=156.1
Q ss_pred EEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeC---CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 104 FIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSH---DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 104 ~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~---~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
+-++......-.+|++.. ......+.+|...|+.+.|++ +.+++++.|-.+..||++.........
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-------- 154 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-------- 154 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee--------
Confidence 333344445566898753 334455678999999999986 489999999999999998654322211
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC--eEEEEe
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS-KCIETIQAHSEPINALVVADDG--VLYSAS 254 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~l~s~~ 254 (434)
..-......++|+-....+++.+..+.|.+||++.| .++..+++|...|+.++|..-. .+.+++
T Consensus 155 -------------~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 155 -------------SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred -------------ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC
Confidence 023345677889876666666677788999999876 5788889999999999998654 899999
Q ss_pred CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC--EEEEEcCCCeEEEEEcCcccc------cccccCccc
Q 046226 255 DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG--LLYGGCTDGYIHYWHKGWFSA------QLQYGGALQ 326 (434)
Q Consensus 255 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~ 326 (434)
.||+|+.||......... .......++..-++.|-|. ++.---.+..+.+++.+.... .......+.
T Consensus 222 ~d~tvkfw~y~kSt~e~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~ 296 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESK-----RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV 296 (1081)
T ss_pred CCCceeeecccccccccc-----eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence 999999999762221111 1122345666667777433 333222333555655443222 234456788
Q ss_pred CcccceEEEEee------CC------EEEEecCCCcEEEEeccC
Q 046226 327 GHTHAVMCLASV------AN------YVISGSADSTSRVWAREQ 358 (434)
Q Consensus 327 ~~~~~v~~~~~~------~~------~l~s~~~dg~i~iwd~~~ 358 (434)
||...|..+.|- ++ .|++=+.|..+++|-+.+
T Consensus 297 GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 297 GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 999988777662 11 799999999999998764
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.07 E-value=4.1e-07 Score=91.30 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=151.7
Q ss_pred CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226 131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT 208 (434)
Q Consensus 131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 208 (434)
....|.++.|-++ .++.+..+|.|.+............++.. .-...|.+++|+||+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG-------------------~vd~GI~a~~WSPD~El 134 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG-------------------SVDSGILAASWSPDEEL 134 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE-------------------EEcCcEEEEEECCCcCE
Confidence 4568999999887 78899999999999332211111111110 25567999999999999
Q ss_pred EEEEecCCcEEEEEcCC-----------------------CeeEEEccc------------------------CccCeEE
Q 046226 209 LYSASLDKTIKVWRIRD-----------------------SKCIETIQA------------------------HSEPINA 241 (434)
Q Consensus 209 l~s~~~dg~i~vwd~~~-----------------------~~~~~~~~~------------------------~~~~v~~ 241 (434)
|+..+.+++|.+.+-.- |+.-..|.+ ....-..
T Consensus 135 la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ 214 (928)
T PF04762_consen 135 LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVR 214 (928)
T ss_pred EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceE
Confidence 99999899888774310 111111111 1223457
Q ss_pred EEEcCCC-eEEEEeC---C---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCeEEEEE
Q 046226 242 LVVADDG-VLYSASD---D---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGYIHYWH 311 (434)
Q Consensus 242 ~~~~~~~-~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d 311 (434)
|+|..|| ++++.+. . ..+|||+.. ..+......-.+--.+++|.|.|+++++... ...|.+|.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-------G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-------GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-------ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 8899999 7666653 2 579999754 2233332333334457899999999998764 45677776
Q ss_pred cCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEEEeecc-ccceeEEEEeecccCCC
Q 046226 312 KGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLAVLVGH-RGPIRCAIAFLGRFGEE 388 (434)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~ 388 (434)
-+.. .-.++.-.+......|..+.|+ ++.|+..-.|. |.+|-..+. .+-..+.+.-. ...+..+.|+|..
T Consensus 288 rNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~---- 360 (928)
T PF04762_consen 288 RNGL-RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEK---- 360 (928)
T ss_pred cCCc-EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCC----
Confidence 3322 2222222233455678999997 55777766554 999998875 33444444432 3345559999874
Q ss_pred CCCcccEEEEeecCCeEEEEec
Q 046226 389 TEDEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 389 ~~~~~~~l~s~~~Dg~v~iw~~ 410 (434)
...|.....+|.+..+++
T Consensus 361 ----p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 361 ----PLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred ----CCEEEEEecCCcEEEEEE
Confidence 556666666677655444
No 279
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.06 E-value=3.7e-08 Score=79.88 Aligned_cols=192 Identities=10% Similarity=-0.020 Sum_probs=132.2
Q ss_pred cCCEEEEEeCCCeEEEecCCCcee-EeeccCCCccEEEE---EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCC
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTE-CGRLKAKTSMVVAM---EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKT 176 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l---~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~ 176 (434)
.-.+||.|+.-|...+|...+.+. ......|...|.-+ +-..-.+..++.|.++++.+++.+......
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-------- 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-------- 154 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--------
Confidence 556899999999999999876443 23333343333222 222226888999999999988654333222
Q ss_pred CCceeEEEeccccccCcCCC--eEEEEEecCCCEEEEEecCCcEEEEEcCCC-e-eEE-EcccCccCeEEEEEcCCC-eE
Q 046226 177 GGAVRNLIVGKDKMMKHMGP--ITSIAINVSDDTLYSASLDKTIKVWRIRDS-K-CIE-TIQAHSEPINALVVADDG-VL 250 (434)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~-~~~-~~~~~~~~v~~~~~~~~~-~l 250 (434)
|... +.++++++|++++++.+....|..|.+... + .+. ......+.-.+..|+... .+
T Consensus 155 ----------------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~F 218 (344)
T KOG4532|consen 155 ----------------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQF 218 (344)
T ss_pred ----------------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceE
Confidence 3333 788999999999999999999999988643 2 222 222234445678888877 99
Q ss_pred EEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC--EEEEEcCCCeEEEEEcCcccc
Q 046226 251 YSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG--LLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 251 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~ 317 (434)
+++..||++.|||++..... ..........|.+.++.+.|++.|. +|+..-.-+.+.+.|++....
T Consensus 219 Av~~Qdg~~~I~DVR~~~tp-m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATP-MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEecCCcEEEEEecccccc-hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999999999833221 1222334556889999999998553 455555567899999886543
No 280
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=1.1e-07 Score=88.88 Aligned_cols=195 Identities=13% Similarity=0.034 Sum_probs=110.5
Q ss_pred CcCCCeEEEEEecCCCEEEEEecC---CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEE-EEeCCCe--EEEEec
Q 046226 192 KHMGPITSIAINVSDDTLYSASLD---KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLY-SASDDAT--VRVWRR 264 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-s~~~dg~--i~iwd~ 264 (434)
.+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+......|+||+ .|+ +...+|. |.++|+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 356678899999999998876543 268999998876432 22223334578999999 454 4566675 666666
Q ss_pred ccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEeeCCE
Q 046226 265 YFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANY 341 (434)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 341 (434)
. .. . ...+..+.......+|+|||+.|+..+. ++ .|+++|+...... .+ ...++...-.+++.+|++
T Consensus 294 ~--tg-~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~L--t~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 294 A--TK-A----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RL--TFEGEQNLGGSITPDGRS 363 (448)
T ss_pred C--CC-C----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EE--ecCCCCCcCeeECCCCCE
Confidence 5 11 1 1222333345567899999998876553 44 4555666433221 11 112222222345566777
Q ss_pred EEEecC-CC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee-cCCe--EEEEecC
Q 046226 342 VISGSA-DS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGV--LKMWRVT 411 (434)
Q Consensus 342 l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~--v~iw~~~ 411 (434)
|+..+. ++ .|.++|+.++.. .. +... .......|+|+ |++|+..+ .+|. +++++.+
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spd---------G~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPN---------GTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCC---------CCEEEEEEecCCceEEEEEECC
Confidence 666544 44 455567766521 22 2111 11223467777 77666544 3443 6666764
No 281
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=1.4e-07 Score=87.26 Aligned_cols=203 Identities=8% Similarity=-0.061 Sum_probs=112.4
Q ss_pred cCCCeEEEEEecCCCEE---EEEecC--CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC----eEEE
Q 046226 193 HMGPITSIAINVSDDTL---YSASLD--KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA----TVRV 261 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l---~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg----~i~i 261 (434)
....+.+=.|+|||+.+ ++...+ ..|.+.++.+++.... ....+......|+||| .|+..+ .+| .+..
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~ 261 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS 261 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence 34455667999999752 244444 3688889987764332 2234445578999999 555443 223 3444
Q ss_pred EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEc--CcccccccccCcccCcccceEE--EE
Q 046226 262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHK--GWFSAQLQYGGALQGHTHAVMC--LA 336 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~v~~--~~ 336 (434)
|++....... ...............+|+|||+.|+..+ .+|...+|.+ ........ .+..+...+.. ++
T Consensus 262 ~~~~~g~~g~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~~~~~~p~wS 335 (428)
T PRK01029 262 FSLETGAIGK---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKYRNSSCPAWS 335 (428)
T ss_pred eecccCCCCc---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCCCCccceeEC
Confidence 6654111111 1111112223345679999999877655 4665555543 21111111 11122223333 44
Q ss_pred eeCCEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEe-ec--CCeEEEEec
Q 046226 337 SVANYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG-SL--DGVLKMWRV 410 (434)
Q Consensus 337 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~-~~--Dg~v~iw~~ 410 (434)
++|+.|+..+.+ ..|.+||+.++.. . .+......+....|+|+ |+.|+.. .. +..|++|++
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~-~---~Lt~~~~~~~~p~wSpD---------G~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRD-Y---QLTTSPENKESPSWAID---------SLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCe-E---EccCCCCCccceEECCC---------CCEEEEEECCCCCceEEEEEC
Confidence 467777665433 4699999987632 2 22222345667889988 7776643 32 356888898
Q ss_pred CCCCc
Q 046226 411 TRPKS 415 (434)
Q Consensus 411 ~~~~~ 415 (434)
..++.
T Consensus 403 ~~g~~ 407 (428)
T PRK01029 403 ITKKT 407 (428)
T ss_pred CCCCE
Confidence 87654
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=6.7e-07 Score=91.50 Aligned_cols=209 Identities=8% Similarity=0.040 Sum_probs=128.5
Q ss_pred CCCeEEEEEecCCCEEEEEec-CCcEEEEEcCCCeeEEEcccC-----------------ccCeEEEEEcC-CC-eEEEE
Q 046226 194 MGPITSIAINVSDDTLYSASL-DKTIKVWRIRDSKCIETIQAH-----------------SEPINALVVAD-DG-VLYSA 253 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~-~l~s~ 253 (434)
-.....+++.++++.|+++.. ++.|+++|+.++. +.++.+. -..-..+++++ ++ ++++.
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 345688999998887766654 5679999987765 3333210 11235789998 45 66777
Q ss_pred eCCCeEEEEecccccCcceeEEE-----EEec------ccccCeEEEEEecCCCEE-EEEcCCCeEEEEEcCcccccccc
Q 046226 254 SDDATVRVWRRYFYSENQLHTLI-----LTLT------AKYSPVKTLTLTLDDGLL-YGGCTDGYIHYWHKGWFSAQLQY 321 (434)
Q Consensus 254 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~ 321 (434)
..++.|++||.... ...... .... ........++++|+++.| ++-..++.|++||+.........
T Consensus 702 ~~~~~I~v~d~~~g---~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 702 AGQHQIWEYNISDG---VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred CCCCeEEEEECCCC---eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 78899999997521 110000 0000 111345679999998855 45566799999998753321100
Q ss_pred ---------cCccc---C-----cccceEEEEe--eCCEEEEecCCCcEEEEeccCCCceeeEEE----------eeccc
Q 046226 322 ---------GGALQ---G-----HTHAVMCLAS--VANYVISGSADSTSRVWAREQDGRHTMLAV----------LVGHR 372 (434)
Q Consensus 322 ---------~~~~~---~-----~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~h~ 372 (434)
...+. + .-....++++ +|+++++-..++.|++||..++........ ..+.-
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 00000 0 0011234444 467888888999999999987521111100 01112
Q ss_pred cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
.....++++++ |+++++-+.++.|++||+.+++.
T Consensus 859 ~~P~GIavd~d---------G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGEN---------GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCC---------CCEEEEECCCCEEEEEECCCCcc
Confidence 24677888888 88999999999999999988754
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=6e-09 Score=95.52 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=162.1
Q ss_pred CccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEE
Q 046226 132 TSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL 209 (434)
Q Consensus 132 ~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 209 (434)
.....|+.|+.+ ++++|+.||.++|..+.+...-.... +-....-......+.+|...|.-+.|+.+.+.|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-------glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-------GLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-------ccccccccchhhhhccCcceEEEEEeccccccc
Confidence 345789999876 89999999999999887653322111 100111122334566899999999999999999
Q ss_pred EEEecCCcEEEEEcCCCeeEEEcc--cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCe
Q 046226 210 YSASLDKTIKVWRIRDSKCIETIQ--AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV 286 (434)
Q Consensus 210 ~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 286 (434)
-+...+|.|.+|-+-.|.-...+. .....|.+++|+.+| .+.....||.|.+=.+. +...+. ..+. ....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd---GNRIwg--KeLk--g~~l 159 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD---GNRIWG--KELK--GQLL 159 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec---cceecc--hhcc--hhec
Confidence 999999999999997775433322 245678999999999 88888889888776554 111111 1111 1234
Q ss_pred EEEEEecCCCEEEEEcCCCeEEEEEcCccc-cccccc------CcccCcccceEEEEee----------CCEEEEecCCC
Q 046226 287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFS-AQLQYG------GALQGHTHAVMCLASV----------ANYVISGSADS 349 (434)
Q Consensus 287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~------~~~~~~~~~v~~~~~~----------~~~l~s~~~dg 349 (434)
..+.|++|.+.++.+-..|.+++||....- .+.+.. ..+......|..+.|. --.|+.+-.+|
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 478899999999999999999999964321 111110 0111111123444442 22789999999
Q ss_pred cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC
Q 046226 350 TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG 403 (434)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 403 (434)
.+.|-.-.+...+..+. -.-.|..+.|+++ |.+|+.+|.|.
T Consensus 240 r~QiMR~eND~~Pvv~d----tgm~~vgakWnh~---------G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVD----TGMKIVGAKWNHN---------GAVLAVCGNDS 280 (1189)
T ss_pred eehhhhhcCCCCCeEEe----cccEeecceecCC---------CcEEEEccCcc
Confidence 99998766653222221 1256788999998 89999988653
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=2.7e-06 Score=70.34 Aligned_cols=195 Identities=12% Similarity=0.090 Sum_probs=117.7
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-------CccCeEEEEEcCCC-------eEEEEeCCCeEE
Q 046226 195 GPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-------HSEPINALVVADDG-------VLYSASDDATVR 260 (434)
Q Consensus 195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-------~l~s~~~dg~i~ 260 (434)
..=+-++|+||+.+||.+...|+|+++|+... .+..+.. -...|..+.|.+.. .|+.-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 34577899999999999999999999999653 3334332 12456666665321 577778888888
Q ss_pred EEecccccC-cceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-
Q 046226 261 VWRRYFYSE-NQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS- 337 (434)
Q Consensus 261 iwd~~~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~- 337 (434)
-|-+..... .........+.. ....|.++.++|..++|++|+.... + .. .-.+....+++...
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~----~----~~------~s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN----Q----DG------MSKASSCGLTAWRIL 188 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC----C----Cc------cccccccCceEEEEc
Confidence 876642111 112222223332 3568999999999888887765322 0 00 00012223333332
Q ss_pred e--CCEE-EEecCCCc------EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 338 V--ANYV-ISGSADST------SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 338 ~--~~~l-~s~~~dg~------i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
+ +-+. ++...|+. ..+|.+-+. ............|..|..+|+ |..||+...+|.|.+|
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPd---------g~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPD---------GSLLACIHFSGSLSLW 256 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccce---eeeeccccCCCceEEEEECCC---------CCEEEEEEcCCeEEEE
Confidence 1 2222 22222222 133433322 122222334677999999999 9999999999999999
Q ss_pred ecCCCCcc
Q 046226 409 RVTRPKSS 416 (434)
Q Consensus 409 ~~~~~~~~ 416 (434)
++.+-+..
T Consensus 257 ~iPsL~~~ 264 (282)
T PF15492_consen 257 EIPSLRLQ 264 (282)
T ss_pred ecCcchhh
Confidence 99976644
No 285
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=1.3e-06 Score=89.48 Aligned_cols=249 Identities=11% Similarity=0.065 Sum_probs=142.4
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccC-C-------------CccEEEEEEeCC--EEEEEEc-CCeEEEeecCCCC
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-K-------------TSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWDN 163 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~-------------~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~~ 163 (434)
+++++++-..++.|++||... ..+..+.. . -..-..++++++ .|+++.. ++.|+++|..++.
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~ 657 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET 657 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence 456777777888999999754 43333322 1 012467888764 4555544 5778888876542
Q ss_pred CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCeeEEEccc--------
Q 046226 164 GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSKCIETIQA-------- 234 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------- 234 (434)
+..+. ..+........+.......-..-..++|+|+ +.++++...++.|++||..++... .+.+
T Consensus 658 -V~tla-----g~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~ 730 (1057)
T PLN02919 658 -VRTLA-----GNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLN 730 (1057)
T ss_pred -EEEEe-----ccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCC
Confidence 22211 0000000000000000001123468899994 555666677889999999876542 2211
Q ss_pred -------CccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEE----------EEec--------ccccCeE
Q 046226 235 -------HSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLI----------LTLT--------AKYSPVK 287 (434)
Q Consensus 235 -------~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~~~--------~~~~~v~ 287 (434)
.-.....|+++|++ ++++-..++.|++||+.... ..... ..+. .......
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 11234679999987 55566677999999986211 10000 0000 0112346
Q ss_pred EEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC---------cccCcccceEEEEe--eCCEEEEecCCCcEEEEec
Q 046226 288 TLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG---------ALQGHTHAVMCLAS--VANYVISGSADSTSRVWAR 356 (434)
Q Consensus 288 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd~ 356 (434)
.++++++|+++++-..++.|++||..+......... ...+.-.....+++ +|+.+++-+.++.|++||+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 889999999888889999999999864332211000 01111223445555 5778888889999999999
Q ss_pred cCCC
Q 046226 357 EQDG 360 (434)
Q Consensus 357 ~~~~ 360 (434)
.++.
T Consensus 888 ~~~~ 891 (1057)
T PLN02919 888 NKGE 891 (1057)
T ss_pred CCCc
Confidence 8863
No 286
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.1e-07 Score=85.02 Aligned_cols=249 Identities=10% Similarity=0.108 Sum_probs=155.6
Q ss_pred EEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC----EEEE-----EEcCCeEEEeecCCCCCc
Q 046226 96 LCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD----RVYA-----AYGDGKIRVWRSTWDNGV 165 (434)
Q Consensus 96 ~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~l~~-----~s~dg~i~vwd~~~~~~~ 165 (434)
++..| .++.|+.=-..+.+.+|++.+.+.+. -+-|...|..+.++|. .+++ .+.-..|+||........
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 56777 44455544456789999987744332 2336778899999886 3332 244678999976522211
Q ss_pred eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE---EEec---------CCcEEEEEcCCCeeEEEcc
Q 046226 166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY---SASL---------DKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~---s~~~---------dg~i~vwd~~~~~~~~~~~ 233 (434)
..+.... + ....=..+.|++-|.-|+ +..- ..++++.+++...+...+.
T Consensus 208 ~~~a~ks----------F---------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 208 QPVANKS----------F---------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred chhhhcc----------c---------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 1110000 0 111223456666554322 2222 2468888887445554443
Q ss_pred cCccCeEEEEEcCCC---eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---CCeE
Q 046226 234 AHSEPINALVVADDG---VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---DGYI 307 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i 307 (434)
..++|.++.|++++ -++-|-.--.+.|||++ ...+. .-..++=+++-|+|.|++++.++- .|.|
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-------~~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-------GKPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-------CCEeE--eCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence 57899999999999 34455567889999987 22222 234567788999999999888765 5899
Q ss_pred EEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecC------CCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226 308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSA------DSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381 (434)
Q Consensus 308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 381 (434)
-+||+.. .+.+..+......+...+++|++|++++. |+.++||+.... .+....-.+ ....+.|-
T Consensus 339 EvwDv~n----~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~----~l~~~~f~s-EL~qv~W~ 409 (566)
T KOG2315|consen 339 EVWDVPN----RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS----LLHEKMFKS-ELLQVEWR 409 (566)
T ss_pred EEEeccc----hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc----eeehhhhhH-hHhheeee
Confidence 9999864 34444555666677777888999988874 788999998753 222211111 46667777
Q ss_pred ec
Q 046226 382 LG 383 (434)
Q Consensus 382 ~~ 383 (434)
|.
T Consensus 410 P~ 411 (566)
T KOG2315|consen 410 PF 411 (566)
T ss_pred ec
Confidence 65
No 287
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.98 E-value=2.7e-09 Score=85.98 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=118.3
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE------------EcccCccCeEEEEEc-CCCeEEEEeCCCeEEEEe
Q 046226 197 ITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE------------TIQAHSEPINALVVA-DDGVLYSASDDATVRVWR 263 (434)
Q Consensus 197 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~-~~~~l~s~~~dg~i~iwd 263 (434)
++.+.+. ....|+++..++.+......++.+.. .+..|.++-.+-+.+ ++..++++..||.+.+++
T Consensus 39 ~~~~~~v-~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLS-AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeech-hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 4455554 34456677777766666554443322 222222222122222 233799999999999998
Q ss_pred cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-----CCeEEEEEcCcccccccccCcccCcccceEEEEee
Q 046226 264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-----DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV 338 (434)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 338 (434)
.+. ..............-.+.++...++.+.++.. -+..+.|+++..+........+ ..|.+++-+
T Consensus 118 ~~~-----~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~----~~v~~l~~h 188 (319)
T KOG4714|consen 118 TDK-----DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL----DAVTALCSH 188 (319)
T ss_pred chH-----HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc----ccchhhhCC
Confidence 762 11111111111122233344445555554432 3345666665333222211111 226666655
Q ss_pred ---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 339 ---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 339 ---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
.+.+++|+.||.+-+||.++.. .+...+..|..+|+.+-|+|.. +..|+++++||.+..||-.+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~--------p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKN--------PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCC--------chheeEecCCCcEEEEcCCC
Confidence 3488999999999999999863 5666788999999999999986 78999999999999999773
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=1.2e-06 Score=75.04 Aligned_cols=212 Identities=14% Similarity=0.118 Sum_probs=131.8
Q ss_pred CCCeEEEecCCCceeEeeccCC--CccEEEEEE-eCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226 110 DSNVIRIWKQPEFTECGRLKAK--TSMVVAMEV-SHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG 186 (434)
Q Consensus 110 ~dg~i~iwd~~~~~~~~~~~~~--~~~v~~l~~-~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
.+|+|..||..+++.+.+.... .....+... ..+.+++++.++.|..||..+++.+........
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------------- 67 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------------- 67 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-------------
Confidence 3789999999999998887541 122332233 666888889999999999988877666643110
Q ss_pred cccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc-ccCcc-----CeEEEEEcCCCeEEEEeCCCeEE
Q 046226 187 KDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI-QAHSE-----PINALVVADDGVLYSASDDATVR 260 (434)
Q Consensus 187 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~l~s~~~dg~i~ 260 (434)
.... . ...+..+++++.++.|+.+|..+|+.+... ..... ......+. ++.++.+..++.|.
T Consensus 68 ------~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 68 ------ISGA----P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLV 135 (238)
T ss_dssp ------GGSG----E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEE
T ss_pred ------ccce----e-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEE
Confidence 0111 1 224666777778889999999999998884 32211 11223333 34788888899999
Q ss_pred EEecccccCcceeEEEEEeccccc----------CeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCccc
Q 046226 261 VWRRYFYSENQLHTLILTLTAKYS----------PVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTH 330 (434)
Q Consensus 261 iwd~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 330 (434)
.+|+. .+ ..+-....... .+..-....++ .++.+..++.+..+|+.+....... ...
T Consensus 136 ~~d~~--tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~--~~~---- 202 (238)
T PF13360_consen 136 ALDPK--TG----KLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK--PIS---- 202 (238)
T ss_dssp EEETT--TT----EEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE--CSS----
T ss_pred EEecC--CC----cEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe--cCC----
Confidence 99987 22 22222221111 11122222234 7777777776444488766533321 111
Q ss_pred ceEE-EEeeCCEEEEecCCCcEEEEeccCC
Q 046226 331 AVMC-LASVANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 331 ~v~~-~~~~~~~l~s~~~dg~i~iwd~~~~ 359 (434)
.+.. ...+++.|+.++.++.|..||++++
T Consensus 203 ~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 203 GIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred CccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1333 5667888888889999999999998
No 289
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.98 E-value=3.5e-06 Score=68.56 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=85.4
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEE-EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAME-VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~-~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
...+++.|+..+.+.--|..++....+-.. ...|.+-+ .-.|.++.|+..|.+++.+.+++.....+...
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-------- 92 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-------- 92 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh--------
Confidence 357888889999999889998887765332 22333322 25678999999999999999988776666421
Q ss_pred eeEEEeccccccCcCCCeEE-EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcC
Q 046226 180 VRNLIVGKDKMMKHMGPITS-IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVAD 246 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 246 (434)
+.|.+ ....+++..+..|+.|++.+..|..+..++...+...+...+-++.+
T Consensus 93 ---------------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 93 ---------------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred ---------------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence 11221 22356899999999999999999999888887764433333333333
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=1.3e-08 Score=87.15 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=102.5
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEcCCCee----EEEcccCccCeEEEEEcCCC-eEEEEe---CCCeEEEEecccc
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKC----IETIQAHSEPINALVVADDG-VLYSAS---DDATVRVWRRYFY 267 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~ 267 (434)
....+..++++++++++..+....++++..... +...... ..-+++.+..+. ....+. ....+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~-- 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSAD-- 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeeccc--
Confidence 344556778899999998888877877764432 2222211 122333333333 333333 33444444433
Q ss_pred cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEec
Q 046226 268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGS 346 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~ 346 (434)
. .......+|-..+..++++||+++++++..|..|++-... .......-+-||..-|..++.- +..|++++
T Consensus 141 ----~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp---a~f~IesfclGH~eFVS~isl~~~~~LlS~s 212 (390)
T KOG3914|consen 141 ----S-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP---ATFVIESFCLGHKEFVSTISLTDNYLLLSGS 212 (390)
T ss_pred ----c-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC---cccchhhhccccHhheeeeeeccCceeeecC
Confidence 1 2233456788999999999999999999999999998753 2222223345899999999886 45679999
Q ss_pred CCCcEEEEeccCCC
Q 046226 347 ADSTSRVWAREQDG 360 (434)
Q Consensus 347 ~dg~i~iwd~~~~~ 360 (434)
.|++|++||+.+++
T Consensus 213 GD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 213 GDKTLRLWDITSGK 226 (390)
T ss_pred CCCcEEEEecccCC
Confidence 99999999999984
No 291
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.96 E-value=1.3e-06 Score=77.43 Aligned_cols=311 Identities=11% Similarity=0.053 Sum_probs=185.9
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCc----ccceeeeEEEeeccccEEEEEE--cCCEEEEEeCCC---------------e
Q 046226 55 TSPLSSPRHPFNPTAAAGSSSPET----SSSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSN---------------V 113 (434)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg---------------~ 113 (434)
+-+......++.+..++.....+. -..+..+..+. | ..|.-+.| .+.+|.|=+..+ .
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 334555566777777777665432 23333333332 2 34777777 889999866544 4
Q ss_pred EEEecCCCceeEeeccCCCcc--EE-EEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccc
Q 046226 114 IRIWKQPEFTECGRLKAKTSM--VV-AMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKD 188 (434)
Q Consensus 114 i~iwd~~~~~~~~~~~~~~~~--v~-~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
+.+||+.++..+..+.....+ .+ -+.|+-+ +++-. ....+.|+++ ++... ......
T Consensus 110 ~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~-~~p~~~---------------- 170 (561)
T COG5354 110 VFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE-EHPFKN---------------- 170 (561)
T ss_pred eeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-cCchhh----------------
Confidence 999999999999988776655 44 5667665 22222 3566889987 22211 110000
Q ss_pred cccCcCCCeEEEEEecCC--CEEEE-----EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-E---e--
Q 046226 189 KMMKHMGPITSIAINVSD--DTLYS-----ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-A---S-- 254 (434)
Q Consensus 189 ~~~~~~~~v~~~~~~~~~--~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~---~-- 254 (434)
-....|....|+|.+ ..|+. ...++++++|.+..+..+.+-.-....-..+.|.+.| .|+. . .
T Consensus 171 ---lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ks 247 (561)
T COG5354 171 ---LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKS 247 (561)
T ss_pred ---ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeec
Confidence 022457777888763 33332 3557889999998766555443333333467788777 2221 1 1
Q ss_pred -----CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE--cCCCeEEEEEcCcccccccccCcccC
Q 046226 255 -----DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG--CTDGYIHYWHKGWFSAQLQYGGALQG 327 (434)
Q Consensus 255 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~ 327 (434)
....+.++++. ...+ .......++|...+|.|.++.+++. -.+..+.++|++.. ..+. +..
T Consensus 248 nKsyfgesnLyl~~~~------e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~--~Pe 315 (561)
T COG5354 248 NKSYFGESNLYLLRIT------ERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFY--FPE 315 (561)
T ss_pred ccceeccceEEEEeec------cccc-ceeccccccceeeeecccCCceeEEecccccceeecccccc---eEEe--cCC
Confidence 12456777665 1111 1111456899999999988766554 56889999998643 2211 111
Q ss_pred cccceEEEEeeCCEEEEecCC---CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee----
Q 046226 328 HTHAVMCLASVANYVISGSAD---STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS---- 400 (434)
Q Consensus 328 ~~~~v~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~---- 400 (434)
....-..++.++++++.++-| |.+.+||.... ..++..+.+-.. .-+.|+|+ ++++.+.-
T Consensus 316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n~--s~~~wspd---------~qF~~~~~ts~k 382 (561)
T COG5354 316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLNT--SYCDWSPD---------GQFYDTDTTSEK 382 (561)
T ss_pred cccccccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCCc--eEeeccCC---------ceEEEecCCCcc
Confidence 111122334457788876654 68999998764 345545555432 34678888 77776653
Q ss_pred --cCCeEEEEecCCCC
Q 046226 401 --LDGVLKMWRVTRPK 414 (434)
Q Consensus 401 --~Dg~v~iw~~~~~~ 414 (434)
.|..|+||++...+
T Consensus 383 ~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 383 LRVDNSIKLWDVYGAK 398 (561)
T ss_pred cccCcceEEEEecCch
Confidence 68899999997543
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=4e-09 Score=88.42 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=109.6
Q ss_pred EEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226 210 YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT 288 (434)
Q Consensus 210 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 288 (434)
++.+.+..|.+-|+++|.. +.|. ..+.|.++.|...+ +++.|..+|.|..+|++.......+.. ..--|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a--~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA--QRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce--EEEEcCcchhh
Confidence 4455577899999998754 3333 56788899998755 999999999999999994322222222 22347788888
Q ss_pred EEEec-CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceE----EEEeeCCEEEEecCCCcEEEEeccCCCcee
Q 046226 289 LTLTL-DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVM----CLASVANYVISGSADSTSRVWAREQDGRHT 363 (434)
Q Consensus 289 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 363 (434)
+..-. ++++|++.+.+|+|++||++..+... -.....||...-. .+...+..++++++|...|||.++.+ .
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g---h 379 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG---H 379 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccC---c
Confidence 88776 78999999999999999998655422 1234456654332 23334568889999999999999988 6
Q ss_pred eEEEeec
Q 046226 364 MLAVLVG 370 (434)
Q Consensus 364 ~~~~~~~ 370 (434)
++.+++.
T Consensus 380 Ll~tipf 386 (425)
T KOG2695|consen 380 LLCTIPF 386 (425)
T ss_pred eeeccCC
Confidence 6665543
No 293
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.1e-06 Score=78.63 Aligned_cols=272 Identities=10% Similarity=0.037 Sum_probs=167.9
Q ss_pred EEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEc-----------CCeEEEeecCC
Q 046226 97 CIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYG-----------DGKIRVWRSTW 161 (434)
Q Consensus 97 ~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-----------dg~i~vwd~~~ 161 (434)
-+.| .|.||+|--.-| |.+|--++...++++. |.+ |.-+.|+|+ +|++=+. ...++|||+.+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 3455 788999887655 7799888777777664 544 888999997 7777543 26799999999
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEE
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINA 241 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~ 241 (434)
+...+.+.... .....-.-+.|+.|++++|.-.. ..|.||+..+..++..-...-..|..
T Consensus 292 G~lkrsF~~~~-------------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~ 351 (698)
T KOG2314|consen 292 GLLKRSFPVIK-------------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRD 351 (698)
T ss_pred cchhcceeccC-------------------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccC
Confidence 88777664321 11112234679999999998776 46999998765444333334567889
Q ss_pred EEEcCCC-eEEEEeC--C---CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc----------CCC
Q 046226 242 LVVADDG-VLYSASD--D---ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC----------TDG 305 (434)
Q Consensus 242 ~~~~~~~-~l~s~~~--d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg 305 (434)
..|+|.+ +|+-=.. + ..+.+-.+. ..+.+.+..-++-.=..+.|-.+|.+|+.-- .-.
T Consensus 352 FswsP~~~llAYwtpe~~~~parvtL~evP------s~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPETNNIPARVTLMEVP------SKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred cccCCCcceEEEEcccccCCcceEEEEecC------ccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 9999987 4332211 1 122222222 1112222222222223466777788777532 112
Q ss_pred eEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEEecC---CCcEEEEecc-CCCceeeEEEeeccccceeEEE
Q 046226 306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSA---DSTSRVWARE-QDGRHTMLAVLVGHRGPIRCAI 379 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~---dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~ 379 (434)
.+.|+.++........ + .-...|..++|. |+.+++-+. ..++.+|.++ +...+.++..+.. ...+.+.
T Consensus 426 n~eIfrireKdIpve~---v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vf 499 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEV---V-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVF 499 (698)
T ss_pred eEEEEEeeccCCCcee---e-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEE
Confidence 4556665533322221 1 233467888886 554444332 3579999988 4455556666544 4467799
Q ss_pred EeecccCCCCCCcccEEEEee---cCCeEEEEecCC
Q 046226 380 AFLGRFGEETEDEYCTICTGS---LDGVLKMWRVTR 412 (434)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~s~~---~Dg~v~iw~~~~ 412 (434)
|+|. |++++.+. ..|.+.++|+..
T Consensus 500 wsPk---------G~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 500 WSPK---------GRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred EcCC---------CcEEEEEEecccccceEEEecch
Confidence 9999 88887764 578999999884
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.90 E-value=1.2e-05 Score=69.04 Aligned_cols=213 Identities=11% Similarity=-0.010 Sum_probs=131.0
Q ss_pred EEEE---cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEe-CC-EEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226 97 CIAV---GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS-HD-RVYAAYGDGKIRVWRSTWDNGVKHVKLA 171 (434)
Q Consensus 97 ~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 171 (434)
+.+| ++.++++--..+.|..|+..+++... +.... ...+++. ++ .++.+..++ +.++|..+++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 3556 46677777778999999988876543 22222 6777777 55 777776655 455587765333322211
Q ss_pred eccCCCCceeEEEeccccccC-cCCCeEEEEEecCCCEEEEEecC--------CcEEEEEcCCCeeEEEcccCccCeEEE
Q 046226 172 TIPKTGGAVRNLIVGKDKMMK-HMGPITSIAINVSDDTLYSASLD--------KTIKVWRIRDSKCIETIQAHSEPINAL 242 (434)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~ 242 (434)
. .. .....+++++.++|++.++.... |.|..++.. ++.... ...-...+.|
T Consensus 80 ~------------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi 139 (246)
T PF08450_consen 80 D------------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGI 139 (246)
T ss_dssp T------------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEE
T ss_pred C------------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccce
Confidence 0 01 34568899999999977765543 557778876 554333 3345567899
Q ss_pred EEcCCC-e-EEEEeCCCeEEEEecccccC-cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 243 VVADDG-V-LYSASDDATVRVWRRYFYSE-NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 243 ~~~~~~-~-l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
+|+|++ . +++-+..+.|..+++..... ..............+..-.++++.+|++.++....+.|.++|.+ .+...
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 999999 4 45667888899998863222 11122222333333347889999999988888889999999965 22111
Q ss_pred cccCcccCcccceEEEEee
Q 046226 320 QYGGALQGHTHAVMCLASV 338 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~ 338 (434)
.+......+++++|.
T Consensus 219 ----~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 219 ----EIELPVPRPTNCAFG 233 (246)
T ss_dssp ----EEE-SSSSEEEEEEE
T ss_pred ----EEcCCCCCEEEEEEE
Confidence 112222367888884
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=5.3e-07 Score=80.70 Aligned_cols=276 Identities=10% Similarity=0.062 Sum_probs=165.8
Q ss_pred EEEEEE--cCCEEEEEeC-----------CCeEEEecCCCceeEeeccCC--CccE-EEEEEeCC-EEEEEEcCCeEEEe
Q 046226 95 ILCIAV--GNGFIYTGSD-----------SNVIRIWKQPEFTECGRLKAK--TSMV-VAMEVSHD-RVYAAYGDGKIRVW 157 (434)
Q Consensus 95 v~~~~~--~~~~l~tg~~-----------dg~i~iwd~~~~~~~~~~~~~--~~~v-~~l~~~~~-~l~~~s~dg~i~vw 157 (434)
|.-+.| ..+||+|=+. ...++|||+.+|.....+... ...+ .-+.|+.| ..++.-.-..|.||
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy 331 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY 331 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence 666677 7889998653 258999999999988887652 2222 33567776 33333334678899
Q ss_pred ecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--C---CcEEEEEcCCCeeEEEc
Q 046226 158 RSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--D---KTIKVWRIRDSKCIETI 232 (434)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d---g~i~vwd~~~~~~~~~~ 232 (434)
+...-..+.... -....|....|+|.++.||-=.. + ..+.+..+.+++.+++-
T Consensus 332 Etpsf~lld~Ks----------------------lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 332 ETPSFMLLDKKS----------------------LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred ecCceeeecccc----------------------cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec
Confidence 765321111110 13456888899999888874322 1 35777777777777766
Q ss_pred ccCccCeEEEEEcCCC-eEEEEe----------CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226 233 QAHSEPINALVVADDG-VLYSAS----------DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG 301 (434)
Q Consensus 233 ~~~~~~v~~~~~~~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 301 (434)
..+.-.=..+.|-.+| +|+.-- .-..+-|+.++ . .......-.....|...+|-|.|+.+++-
T Consensus 390 nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir---e---KdIpve~velke~vi~FaWEP~gdkF~vi 463 (698)
T KOG2314|consen 390 NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR---E---KDIPVEVVELKESVIAFAWEPHGDKFAVI 463 (698)
T ss_pred cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee---c---cCCCceeeecchheeeeeeccCCCeEEEE
Confidence 6554444456666666 443211 11134445444 1 11111112234578889999999877665
Q ss_pred cC---CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe---cCCCcEEEEeccCCCceeeEE-Eeeccccc
Q 046226 302 CT---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG---SADSTSRVWAREQDGRHTMLA-VLVGHRGP 374 (434)
Q Consensus 302 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~ 374 (434)
+. ..++.+|.+........+...+......-..+++.|++++.+ +..|.+.++|+... .+.. ....|. .
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~-~ 539 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHF-A 539 (698)
T ss_pred EccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCcccc-c
Confidence 43 468899988755555555555544332333344457766654 45789999998852 1111 112232 3
Q ss_pred eeEEEEeecccCCCCCCcccEEEEeec------CCeEEEEecC
Q 046226 375 IRCAIAFLGRFGEETEDEYCTICTGSL------DGVLKMWRVT 411 (434)
Q Consensus 375 v~~~~~~~~~~~~~~~~~~~~l~s~~~------Dg~v~iw~~~ 411 (434)
.+.+.|.|. |+|++|++. |.--+||++.
T Consensus 540 at~veWDPt---------GRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 540 ATEVEWDPT---------GRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cccceECCC---------CCEEEEeeehhhhccccceEEEEee
Confidence 467889988 999999874 4455677765
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=6.3e-09 Score=87.25 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=111.4
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
+-++.+.+..|-+-|+.... ...+. ..+.|.++.|...+++++.|+..|.|..+|++....-.......--|
T Consensus 226 yhfs~G~sqqv~L~nvetg~-------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh 297 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH-------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH 297 (425)
T ss_pred eeecccccceeEEEEeeccc-------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence 33666777778888766111 11222 44678888898889999999999999999998652222221222356
Q ss_pred ccceEEEE---eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeE
Q 046226 329 THAVMCLA---SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVL 405 (434)
Q Consensus 329 ~~~v~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v 405 (434)
...|+++. +++.+|++.+.+|.|.+||++-.+...-+..+.||...-.-+-+.-+ +....|+++|.|...
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-------~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-------EEEGSIFSVGDDCYT 370 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-------cccceEEEccCeeEE
Confidence 77777764 67889999999999999999876333448899999765544444322 226788889999999
Q ss_pred EEEecCCCCcccccc
Q 046226 406 KMWRVTRPKSSCGHL 420 (434)
Q Consensus 406 ~iw~~~~~~~~~~~~ 420 (434)
+||.++.+..++.++
T Consensus 371 RiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIP 385 (425)
T ss_pred EEEecccCceeeccC
Confidence 999999887665443
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.89 E-value=5.4e-08 Score=83.46 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=102.0
Q ss_pred EEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 241 ALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 241 ~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
.+..++.+ +++.+..+....+++.+.... ..+...... -....+++.+..+...+..+..-|.++-+|+-....
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCC--cceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34455666 666666667766777662221 122222211 122344555555556666655555555444432111
Q ss_pred cccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCCCceeeEE-EeeccccceeEEEEeecccCCCCCCcccEE
Q 046226 320 QYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQDGRHTMLA-VLVGHRGPIRCAIAFLGRFGEETEDEYCTI 396 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 396 (434)
......-||...++.++++ +++++++..|..|+|-..... ..+. -.-||..-|..++.-++ ..|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~----------~~L 208 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDN----------YLL 208 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccC----------cee
Confidence 1122345899999988885 669999999999999877654 2222 23479999999999886 468
Q ss_pred EEeecCCeEEEEecCCCCcc
Q 046226 397 CTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 397 ~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+|||.|++|++||+.+++.+
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCcEEEEecccCCcc
Confidence 99999999999999999876
No 298
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=9.9e-08 Score=90.12 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=142.7
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCce
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAV 180 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
++..++.|+-...+..+|+.+.+.........+.|.-+..+...+++|...|+|.+-|.++.+.+..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~----------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD----------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee-----------
Confidence 456677787777888889999888877766666688888888899999999999999998887777764
Q ss_pred eEEEeccccccCcCCCeEEEEEecCCCEEEEEec---------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--e
Q 046226 181 RNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL---------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--V 249 (434)
Q Consensus 181 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~ 249 (434)
.|.+.|.++... |+.|++++. |.-|+|||++..+.+..+.-+.++ .-+.|.|.- .
T Consensus 215 -----------aHs~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~ 280 (1118)
T KOG1275|consen 215 -----------AHSGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTR 280 (1118)
T ss_pred -----------ccccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccce
Confidence 699999888764 888988875 556899999988877766655554 456777765 8
Q ss_pred EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226 250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311 (434)
Q Consensus 250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 311 (434)
++.++..|...+-|.....+... -..........+..++++++++.++.|..+|.|.+|.
T Consensus 281 ~~V~S~sGq~q~vd~~~lsNP~~--~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 281 LAVTSQSGQFQFVDTATLSNPPA--GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEEecccceeeccccccCCCcc--ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88899999999988442222211 1222233345599999999999999999999999997
No 299
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=1.1e-05 Score=71.44 Aligned_cols=212 Identities=10% Similarity=0.057 Sum_probs=128.6
Q ss_pred EEEcCCEEEEEeC----------CCeEEEecCCCceeEeeccCCCc-------cEEEEEEeCC--EEEEEE-c-CCeEEE
Q 046226 98 IAVGNGFIYTGSD----------SNVIRIWKQPEFTECGRLKAKTS-------MVVAMEVSHD--RVYAAY-G-DGKIRV 156 (434)
Q Consensus 98 ~~~~~~~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~-------~v~~l~~~~~--~l~~~s-~-dg~i~v 156 (434)
++-+++.|+++.. +..|.+||..+.+.+.++..... .-..++++++ .+++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 4448887777765 78999999999999988875322 2346778887 566555 3 799999
Q ss_pred eecCCCCCceeeEeee----ccC----------CCCceeEEEeccccccCcCCCeEEE---------EEec-CCCEEEEE
Q 046226 157 WRSTWDNGVKHVKLAT----IPK----------TGGAVRNLIVGKDKMMKHMGPITSI---------AINV-SDDTLYSA 212 (434)
Q Consensus 157 wd~~~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~---------~~~~-~~~~l~s~ 212 (434)
.|+..++.+..+.... .+. .+.....-.........+..++..- .|.+ +++++++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9999988877665421 000 0000000000000000001111000 2344 78888877
Q ss_pred ecCCcEEEEEcCC-----CeeEEEccc-------CccCeEEEEEcCCC-eEEEEe----------CCCeEEEEecccccC
Q 046226 213 SLDKTIKVWRIRD-----SKCIETIQA-------HSEPINALVVADDG-VLYSAS----------DDATVRVWRRYFYSE 269 (434)
Q Consensus 213 ~~dg~i~vwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~-~l~s~~----------~dg~i~iwd~~~~~~ 269 (434)
.+ |.|.+.|+.. .+.+..+.. ..+.+.-+++++++ +++... ..+.|.++|..
T Consensus 213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---- 287 (352)
T TIGR02658 213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK---- 287 (352)
T ss_pred cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC----
Confidence 76 9999999643 233332211 23344559999998 555532 22579999876
Q ss_pred cceeEEEEEecccccCeEEEEEecCCC-EEEEEc-CCCeEEEEEcCcccc
Q 046226 270 NQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGGC-TDGYIHYWHKGWFSA 317 (434)
Q Consensus 270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~i~d~~~~~~ 317 (434)
..+.+..+.. ...+..++++||++ +|++.. .++.|.++|..+.+.
T Consensus 288 --t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 288 --TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred --CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 3333333332 35788999999999 888776 578899999865443
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-07 Score=80.96 Aligned_cols=292 Identities=14% Similarity=0.110 Sum_probs=182.4
Q ss_pred eccccEEEEEE-cCCEEEEEeCCCeEEEecCCC---ceeEeeccCCCccEEEEEEeCC--EEEEEEc-CCeEEEeecCCC
Q 046226 90 KKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPE---FTECGRLKAKTSMVVAMEVSHD--RVYAAYG-DGKIRVWRSTWD 162 (434)
Q Consensus 90 ~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~-dg~i~vwd~~~~ 162 (434)
-|.+.|+.+.. ..+++.+++.||.++.|.-.. -+.+..+..|-..|.+++.+-+ .+.+.+. |..++++|+..-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 38888988888 889999999999999997433 2344556678888888888887 4445455 899999999877
Q ss_pred CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC--CEEEE-EecCCcEEEEEcCCCe--eEEEcccCcc
Q 046226 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD--DTLYS-ASLDKTIKVWRIRDSK--CIETIQAHSE 237 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s-~~~dg~i~vwd~~~~~--~~~~~~~~~~ 237 (434)
..+..+++..+|.. +..+ .++.. ..+++ .-.+|.|.++|-...- ....-+-|..
T Consensus 87 DminmiKL~~lPg~--------------------a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 87 DMINMIKLVDLPGF--------------------AEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred chhhhcccccCCCc--------------------eEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 66655554443321 1111 11111 12333 3457889999975433 3333445899
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEeccc----ccCcc-----eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeE
Q 046226 238 PINALVVADDG-VLYSASDDATVRVWRRYF----YSENQ-----LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYI 307 (434)
Q Consensus 238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 307 (434)
+|.++.+++-+ .+++....|.|.-|.... ..... ....+..+........++.|+|++..+.+-..|..|
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkV 225 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKV 225 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEE
Confidence 99999999988 888888899999997651 00000 011112222334567899999999999999999999
Q ss_pred EEEEcCcccccccccC----------------------------cccCcccce-EEEEe--eCCEEEEecCCCcEEEEec
Q 046226 308 HYWHKGWFSAQLQYGG----------------------------ALQGHTHAV-MCLAS--VANYVISGSADSTSRVWAR 356 (434)
Q Consensus 308 ~i~d~~~~~~~~~~~~----------------------------~~~~~~~~v-~~~~~--~~~~l~s~~~dg~i~iwd~ 356 (434)
+++++.+.+...++.. .+..|...+ +.+.| ++++|+-|+-=| |++.++
T Consensus 226 R~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~ 304 (558)
T KOG0882|consen 226 RGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINL 304 (558)
T ss_pred EEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEe
Confidence 9999876543322211 111222111 22233 477888776544 788888
Q ss_pred cCCCceeeEEEeecccccee------------------EEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 357 EQDGRHTMLAVLVGHRGPIR------------------CAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 357 ~~~~~~~~~~~~~~h~~~v~------------------~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
.++ .+++.+. ....|+ .++.+.+. ...+.++..+++++-....++++
T Consensus 305 ~tn---~v~ri~g-k~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 305 DTN---TVVRILG-KDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred ecC---eEEEEec-cchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCCCCeEEEeeeecceEEEE
Confidence 886 3333321 111111 11112111 11234446677888788888888
No 301
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=2.5e-08 Score=57.97 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=36.3
Q ss_pred eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226 363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~ 409 (434)
+++..+.+|.+.|++++|+|+ +.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~---------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD---------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT---------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc---------cccceeeCCCCEEEEEC
Confidence 678899999999999999999 89999999999999997
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=5.4e-08 Score=80.63 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=139.0
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-----eEEEcccCc------------cCeEEEEEcCCC---eEEE
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-----CIETIQAHS------------EPINALVVADDG---VLYS 252 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~---~l~s 252 (434)
....|+++.|...|.+|++|...|.|.++.-+... ....+++|. ..|..+.|..++ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999765432 223345443 357788887655 7888
Q ss_pred EeCCCeEEEEeccccc------------------C-------------cceeEEEE------EecccccCeEEEEEecCC
Q 046226 253 ASDDATVRVWRRYFYS------------------E-------------NQLHTLIL------TLTAKYSPVKTLTLTLDD 295 (434)
Q Consensus 253 ~~~dg~i~iwd~~~~~------------------~-------------~~~~~~~~------~~~~~~~~v~~~~~~~~~ 295 (434)
.+.|.+|++|.++... + ......+. ....|...+.++.+..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999876220 0 00000010 113466678899999888
Q ss_pred CEEEEEcCCCeEEEEEcCcccccccccCcccCcc-----cceEEEEeeC---CEEEEecCCCcEEEEeccCCCce---ee
Q 046226 296 GLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-----HAVMCLASVA---NYVISGSADSTSRVWAREQDGRH---TM 364 (434)
Q Consensus 296 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~---~~ 364 (434)
..++++ .|=.|.+|++.......... .++.|. .-|++..|++ +.+.-.+..|.|++-|++..... ..
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 877765 46789999986544433322 112222 2345555653 46777778999999999843100 00
Q ss_pred ----------EEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 365 ----------LAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 365 ----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
..-+.+-...|..+.|+++ |++|++-+. -+|+|||++..+..
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~n---------gryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDN---------GRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCC---------CcEEEEecc-ceEEEEecccccCC
Confidence 0111222346788999998 899988765 58999999987754
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=4.2e-05 Score=65.71 Aligned_cols=207 Identities=15% Similarity=0.070 Sum_probs=121.8
Q ss_pred EEEEeC-C-EEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe
Q 046226 137 AMEVSH-D-RVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS 213 (434)
Q Consensus 137 ~l~~~~-~-~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 213 (434)
+..|.+ + .|+... ..+.|..|+...+.... + .......+++...+..|+.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~------------------------~~~~~~G~~~~~~~g~l~v~~ 58 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-I------------------------DLPGPNGMAFDRPDGRLYVAD 58 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-E------------------------ESSSEEEEEEECTTSEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-E------------------------ecCCCceEEEEccCCEEEEEE
Confidence 467776 3 444444 47888888876542211 1 111267778873345566666
Q ss_pred cCCcEEEEEcCCCeeEEEccc-----CccCeEEEEEcCCC-eEEEEeCC--------CeEEEEecccccCcceeEEEEEe
Q 046226 214 LDKTIKVWRIRDSKCIETIQA-----HSEPINALVVADDG-VLYSASDD--------ATVRVWRRYFYSENQLHTLILTL 279 (434)
Q Consensus 214 ~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~ 279 (434)
.++ +.++|..+++....... .....+.+++.++| +.++.... |.|..++.. .... ..
T Consensus 59 ~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~----~~ 129 (246)
T PF08450_consen 59 SGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVT----VV 129 (246)
T ss_dssp TTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEE----EE
T ss_pred cCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEE----EE
Confidence 544 56669988864433332 34578899999999 44444432 445555533 1111 11
Q ss_pred cccccCeEEEEEecCCCEEE-EEcCCCeEEEEEcCccccccc---ccCcccCcccceEEEEee--CCEEEEecCCCcEEE
Q 046226 280 TAKYSPVKTLTLTLDDGLLY-GGCTDGYIHYWHKGWFSAQLQ---YGGALQGHTHAVMCLASV--ANYVISGSADSTSRV 353 (434)
Q Consensus 280 ~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~i 353 (434)
.......+.|+|+|+++.|+ +-+..+.|..|++........ ....+.......-.++++ |++.++....+.|.+
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~ 209 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVV 209 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEE
T ss_pred ecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEE
Confidence 22235678999999998776 556788999999864332111 111222222235556665 677777777899999
Q ss_pred EeccCCCceeeEEEeeccccceeEEEEe
Q 046226 354 WAREQDGRHTMLAVLVGHRGPIRCAIAF 381 (434)
Q Consensus 354 wd~~~~~~~~~~~~~~~h~~~v~~~~~~ 381 (434)
+|.+ + +.+..+..-...+++++|.
T Consensus 210 ~~p~-G---~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 210 FDPD-G---KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp EETT-S---CEEEEEE-SSSSEEEEEEE
T ss_pred ECCC-c---cEEEEEcCCCCCEEEEEEE
Confidence 9987 5 4555554444578999994
No 304
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.5e-06 Score=78.80 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=95.3
Q ss_pred cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeecc-CCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226 94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLK-AKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKL 170 (434)
Q Consensus 94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~ 170 (434)
..+|++..+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++ .+++|+..|.|.++-+..........+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 456777799999999999999999976655433222 23444555566665 667777889999987765322222111
Q ss_pred eeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC----eeEEEcccCccCeEEEEEcC
Q 046226 171 ATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS----KCIETIQAHSEPINALVVAD 246 (434)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~ 246 (434)
.. .. ..|...|++++|++++..+++|...|.|..-.+.+. -..+.+-.....|..+....
T Consensus 117 t~----------~d------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 117 TP----------CD------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cc----------cc------ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 11 11 138899999999999999999999999999888762 11222223455677777663
Q ss_pred CCeEEEE
Q 046226 247 DGVLYSA 253 (434)
Q Consensus 247 ~~~l~s~ 253 (434)
.-+|++.
T Consensus 181 ~~LLVSt 187 (726)
T KOG3621|consen 181 SYLLVST 187 (726)
T ss_pred ceehHhh
Confidence 3244433
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=3e-08 Score=57.64 Aligned_cols=37 Identities=27% Similarity=0.583 Sum_probs=35.2
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK 118 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd 118 (434)
++++.++.+|.+.|++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5789999999999999999 889999999999999997
No 306
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.76 E-value=2.9e-05 Score=73.60 Aligned_cols=273 Identities=10% Similarity=0.042 Sum_probs=154.2
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCc------cE--EEEEEeC-CEEEEEEcCCeEEEeecCCCCCceeeEee
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTS------MV--VAMEVSH-DRVYAAYGDGKIRVWRSTWDNGVKHVKLA 171 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~------~v--~~l~~~~-~~l~~~s~dg~i~vwd~~~~~~~~~~~~~ 171 (434)
.++.++.++.++.|.-.|..+++.+.++..... .+ ..+.+.. +.++.++.++.|..+|.++++.+......
T Consensus 60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 566778888899999999999988877654322 11 1233444 78899999999999999988877666432
Q ss_pred eccCCCCceeEEEeccccccCcCCCeE-EEEEecCCCEEEEEe---------cCCcEEEEEcCCCeeEEEcccCccC---
Q 046226 172 TIPKTGGAVRNLIVGKDKMMKHMGPIT-SIAINVSDDTLYSAS---------LDKTIKVWRIRDSKCIETIQAHSEP--- 238 (434)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~--- 238 (434)
.... ....+. ...+. +..++.++ .+|.|..+|..+|+.+..+......
T Consensus 140 ~~~~-----------------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 140 DQVP-----------------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred CCcC-----------------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 1000 000000 01111 23444443 4688999999999988877542110
Q ss_pred -----------------e-EEEEEcCC-CeEEEEeCCC------------------eEEEEecccccCcceeEEEEEe--
Q 046226 239 -----------------I-NALVVADD-GVLYSASDDA------------------TVRVWRRYFYSENQLHTLILTL-- 279 (434)
Q Consensus 239 -----------------v-~~~~~~~~-~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~-- 279 (434)
+ ....+.+. +.++.++.++ .|.-+|+. +++.........
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~--tG~~~W~~~~~~~~ 278 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD--TGKVKWFYQTTPHD 278 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC--CCCEEEEeeCCCCC
Confidence 1 12333433 4777777665 57777766 333333321110
Q ss_pred ----cccccCe-EEEEEecCCC---EEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe------
Q 046226 280 ----TAKYSPV-KTLTLTLDDG---LLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG------ 345 (434)
Q Consensus 280 ----~~~~~~v-~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~------ 345 (434)
.....++ ..+. .-++. .+++++.+|.+..+|..+.+...+.... ...++.+++.++.+
T Consensus 279 ~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~~~vyv~~~~~~~ 350 (488)
T cd00216 279 LWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDPGLVYLGAFHIPL 350 (488)
T ss_pred CcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCCceEEEccccccc
Confidence 0000111 1110 01333 6788889999999998877665543211 01112222333332
Q ss_pred ------------cCCCcEEEEeccCCCceeeEEEeecc--c------cce--eEEEEeecccCCCCCCcccEEEEeecCC
Q 046226 346 ------------SADSTSRVWAREQDGRHTMLAVLVGH--R------GPI--RCAIAFLGRFGEETEDEYCTICTGSLDG 403 (434)
Q Consensus 346 ------------~~dg~i~iwd~~~~~~~~~~~~~~~h--~------~~v--~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 403 (434)
..+|.+.-.|+.+++ .+-..... . .+. ..++.. +.+|+.++.||
T Consensus 351 ~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~-----------g~~v~~g~~dG 416 (488)
T cd00216 351 GLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATA-----------GNLVFAGAADG 416 (488)
T ss_pred cCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEec-----------CCeEEEECCCC
Confidence 246778888888873 33322211 1 111 112222 56888999999
Q ss_pred eEEEEecCCCCcc
Q 046226 404 VLKMWRVTRPKSS 416 (434)
Q Consensus 404 ~v~iw~~~~~~~~ 416 (434)
.|+.+|..+++.+
T Consensus 417 ~l~ald~~tG~~l 429 (488)
T cd00216 417 YFRAFDATTGKEL 429 (488)
T ss_pred eEEEEECCCCcee
Confidence 9999999988765
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=8e-07 Score=83.15 Aligned_cols=187 Identities=11% Similarity=0.105 Sum_probs=125.2
Q ss_pred CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226 132 TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS 211 (434)
Q Consensus 132 ~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 211 (434)
...+.|++++...++.|+.+|.|++.+....- ...+ .|... ..+|.++++
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~-----------------------~~s~~------~~~Gey~as 88 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF-----------------------DHSSS------ILEGEYVAS 88 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-cccc-----------------------ccccc------ccCCceEEE
Confidence 34577788888889999999999998764321 1111 23332 457999999
Q ss_pred EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC------CeEEEEeCCCeEEEEecccccCcceeEEEEEecccccC
Q 046226 212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD------GVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSP 285 (434)
Q Consensus 212 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 285 (434)
|+.||.|.|-.+-+.+...++. -..++.+++++|+ +++++|+.-| +.++.-+..+..... ......++
T Consensus 89 CS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v----~l~~~eG~ 162 (846)
T KOG2066|consen 89 CSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV----VLSEGEGP 162 (846)
T ss_pred ecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce----eeecCccc
Confidence 9999999999998887766665 4568999999998 2899999988 888765533222211 45566789
Q ss_pred eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc--CcccceEEEEeeC-CEEEEecCCCcEEEEeccC
Q 046226 286 VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ--GHTHAVMCLASVA-NYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 286 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~ 358 (434)
|.++.|. |+++|-+..+| |++||.............-. ....-...+.|.. ..|+.|- ..+|+|..++.
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGW-GDSVKICSIKK 234 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEec-CCeEEEEEEec
Confidence 9999995 67888777776 99999865443322111100 0111123455654 4566664 44788888873
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.5e-07 Score=83.70 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=125.9
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ 271 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 271 (434)
....+.|++++ ++.|+-|+.+|.|++++... .. .+...|... .-+| ++++|+.||+|.|..+....
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~--- 104 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD--- 104 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc---
Confidence 44567777775 78999999999999999753 33 333334433 4456 99999999999998765211
Q ss_pred eeEEEEEecccccCeEEEEEecC-----CCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEec
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLD-----DGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGS 346 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 346 (434)
..... ....++.+++++|+ .+.+++|+..| +.++.-+........ .+....++|.++.|.|+++|-++
T Consensus 105 ---~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWan 177 (846)
T KOG2066|consen 105 ---EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWAN 177 (846)
T ss_pred ---cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEec
Confidence 11111 23468999999997 56899999988 888864433222221 34456689999999999999998
Q ss_pred CCCcEEEEeccCCCceeeEEEeeccccce------eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 347 ADSTSRVWAREQDGRHTMLAVLVGHRGPI------RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 347 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
++| |++||+..+ +.+..++.....+ ..+.|.++ ..|+.| ...+|+|..+..+
T Consensus 178 d~G-v~vyd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~----------~~LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 178 DDG-VKVYDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDE----------DRLVIG-WGDSVKICSIKKR 235 (846)
T ss_pred CCC-cEEEecccc---ceeeccCCCCCCCCcccCCCceEecCC----------CeEEEe-cCCeEEEEEEecc
Confidence 776 899999887 4444433322322 23666654 345555 4458999998833
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=2e-06 Score=81.19 Aligned_cols=202 Identities=15% Similarity=0.209 Sum_probs=133.3
Q ss_pred EEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC-eEEEEEcCCC-eEEEEeCCC-----eEEEEecccccCccee
Q 046226 201 AINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP-INALVVADDG-VLYSASDDA-----TVRVWRRYFYSENQLH 273 (434)
Q Consensus 201 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~ 273 (434)
+|++.+..++.|+.+|.|.+.+- ..+.++.++.+... |..+....+. .|++.+.|+ .+++||+.........
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 35678899999999999988873 44556788887776 5555555453 788777664 4899999844333312
Q ss_pred EEE---E----EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--CCEEEE
Q 046226 274 TLI---L----TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVIS 344 (434)
Q Consensus 274 ~~~---~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 344 (434)
... . .......++.+++++.+-+.+++|-.+|.|..+.=+-.........-......+|+++.+. +..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 1 1122356889999999999999999999999985321111111111122334689998874 554333
Q ss_pred ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
...-..|.+|.+... . .....+..|...+.|..+++.. +++++++ +..|.+|+.+..++
T Consensus 189 v~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t--------~qfIca~--~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGT--------YQFICAG--SEFLYFYDSDGRGP 247 (933)
T ss_pred EEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCC--------ccEEEec--CceEEEEcCCCcce
Confidence 334568999999843 2 3455678888899999999873 3344444 34799999875443
No 310
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.70 E-value=2.8e-05 Score=68.74 Aligned_cols=139 Identities=17% Similarity=0.120 Sum_probs=103.6
Q ss_pred EEEeeccccEEEEEE--cCCEEEEEeCCC-eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecC
Q 046226 86 SSVLKKDGQILCIAV--GNGFIYTGSDSN-VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRST 160 (434)
Q Consensus 86 ~~~~~h~~~v~~~~~--~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~ 160 (434)
..-.+|.+.|.-..+ +++-++.|..|| .+-|+|..+++. ..+...-+.|.++..+++ .++++.....+.+.|++
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 334568888888888 777899999999 999999877664 445556778999999998 57777777888888988
Q ss_pred CCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC----cEEEEEcCCCeeEEEcccCc
Q 046226 161 WDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK----TIKVWRIRDSKCIETIQAHS 236 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~ 236 (434)
+++....-+ ...+-|+.+.|+|+++++|-+--+| .|+++|+..++...... ..
T Consensus 432 ngnv~~idk----------------------S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t 488 (668)
T COG4946 432 NGNVRLIDK----------------------SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT 488 (668)
T ss_pred CCCeeEecc----------------------cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc
Confidence 765422221 3566799999999999999775554 79999999887654433 33
Q ss_pred cCeEEEEEcCCC
Q 046226 237 EPINALVVADDG 248 (434)
Q Consensus 237 ~~v~~~~~~~~~ 248 (434)
+.=.+-+|.|++
T Consensus 489 a~DfsPaFD~d~ 500 (668)
T COG4946 489 AYDFSPAFDPDG 500 (668)
T ss_pred ccccCcccCCCC
Confidence 333456777887
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=1.7e-05 Score=65.81 Aligned_cols=192 Identities=14% Similarity=0.118 Sum_probs=110.6
Q ss_pred cEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccC-------CCccEEEEEEeCC--------EEEEEEcCCeEEE
Q 046226 94 QILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKA-------KTSMVVAMEVSHD--------RVYAAYGDGKIRV 156 (434)
Q Consensus 94 ~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~l~~~~~--------~l~~~s~dg~i~v 156 (434)
.=.-++| |+.+||.+...|+|+++|+.. ..+..+.. -...|..+.|.+. .|++...+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 3456778 899999999999999999865 33334332 1346667766542 5677777888777
Q ss_pred eecCCC--CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226 157 WRSTWD--NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 157 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 234 (434)
|-+..+ +.........+ ...+...|.++.++|..++|++|+.... +++. -++
T Consensus 124 y~vs~gt~q~y~e~hsfsf----------------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a 177 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSF----------------SSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKA 177 (282)
T ss_pred EEEEcccCCcceeeEEEEe----------------cccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccc
Confidence 765322 11111100000 0135678999999999998888765432 1100 011
Q ss_pred CccCeEEEEEcCCC---eEEEEeCCCeE------EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226 235 HSEPINALVVADDG---VLYSASDDATV------RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 235 ~~~~v~~~~~~~~~---~l~s~~~dg~i------~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
....+++-.+-.+. ..++...|+.. .+|.+- ..............|..+..+|||..|++...+|
T Consensus 178 ~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~------~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG 251 (282)
T PF15492_consen 178 SSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP------SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSG 251 (282)
T ss_pred cccCceEEEEcCCCCcEEEccccCccccccccccceeecc------ceeeeeccccCCCceEEEEECCCCCEEEEEEcCC
Confidence 22233333332222 22233322221 222211 1111112233456899999999999999999999
Q ss_pred eEEEEEcCccccc
Q 046226 306 YIHYWHKGWFSAQ 318 (434)
Q Consensus 306 ~i~i~d~~~~~~~ 318 (434)
.|.+|++......
T Consensus 252 ~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 252 SLSLWEIPSLRLQ 264 (282)
T ss_pred eEEEEecCcchhh
Confidence 9999998654433
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=8.3e-09 Score=96.87 Aligned_cols=196 Identities=15% Similarity=0.171 Sum_probs=136.1
Q ss_pred cceeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCC-e
Q 046226 80 SSYRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDG-K 153 (434)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg-~ 153 (434)
..|+..++|..|+..-+|++| +.+.|++|+..|.|+++++.+|.......+|..+|+.+..+.+ .|.+++... -
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 446667788899999999999 7889999999999999999999999999999999999998876 344444433 6
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc-CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH-MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETI 232 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 232 (434)
..+|++..-... .| ...-.++.|+.....-+.|+......+||++++..+.++
T Consensus 1169 saLW~~~s~~~~--------------------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1169 SALWDASSTGGP--------------------------RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred HHHhccccccCc--------------------------cccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 789987532111 12 234567888766555555665567899999999877664
Q ss_pred cc----CccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEE
Q 046226 233 QA----HSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIH 308 (434)
Q Consensus 233 ~~----~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 308 (434)
-. ....-++..|+|+..|+. .|| .+||++.. ..+..+.... .--.-.|+|.|..++.-++
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~------~aIh~FD~ft-~~~~G~FHP~g~eVIINSE----- 1286 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIP------EAIHRFDQFT-DYGGGGFHPSGNEVIINSE----- 1286 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEe--eCc--eeeeeccH------HHHhhhhhhe-ecccccccCCCceEEeech-----
Confidence 22 222336788999884443 455 47998822 2222222111 1112358999998888664
Q ss_pred EEEcCcccc
Q 046226 309 YWHKGWFSA 317 (434)
Q Consensus 309 i~d~~~~~~ 317 (434)
|||+++...
T Consensus 1287 IwD~RTF~l 1295 (1516)
T KOG1832|consen 1287 IWDMRTFKL 1295 (1516)
T ss_pred hhhhHHHHH
Confidence 899876543
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=8.6e-06 Score=79.96 Aligned_cols=219 Identities=12% Similarity=0.127 Sum_probs=133.0
Q ss_pred eccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCc
Q 046226 90 KKDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGV 165 (434)
Q Consensus 90 ~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~ 165 (434)
.-++.|.++.| +++-++.+..+|.|.+-|.++..... ...-...|.+++|+|| .++.++.++++.+-+-.. ..+
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f-~~i 143 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF-EPI 143 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc-cch
Confidence 34578999999 88888889999999999887754322 2223567999999998 777778878777654311 111
Q ss_pred eeeEee-ecc-----CC---CCceeEEEeccc-----------cccC---cCCCeEEEEEecCCCEEEEE-----ecCCc
Q 046226 166 KHVKLA-TIP-----KT---GGAVRNLIVGKD-----------KMMK---HMGPITSIAINVSDDTLYSA-----SLDKT 217 (434)
Q Consensus 166 ~~~~~~-~~~-----~~---~~~~~~~~~~~~-----------~~~~---~~~~v~~~~~~~~~~~l~s~-----~~dg~ 217 (434)
....+. ... .. |..-..+..... +..+ ..+.=+.|.|-.||.++++. .....
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 111110 000 00 000001110000 0000 11223468999999999873 32378
Q ss_pred EEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEE---eCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226 218 IKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSA---SDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL 293 (434)
Q Consensus 218 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 293 (434)
|++||-+ |..-..-....+.-.+++|-|.| ++++- ..|+.|.+|..+ +................+..++|+.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN---GL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN---GLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC---CccccccccCCcccccchheeeecC
Confidence 9999976 44332222233445689999998 66654 356679999755 2223333334444445699999999
Q ss_pred CCCEEEE---EcCCCeEEEEEcCc
Q 046226 294 DDGLLYG---GCTDGYIHYWHKGW 314 (434)
Q Consensus 294 ~~~~l~~---~~~dg~i~i~d~~~ 314 (434)
++..|++ ......|++|-+..
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCceeeeecccccceEEEEEecC
Confidence 9999988 55556699998654
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.6e-06 Score=74.65 Aligned_cols=255 Identities=12% Similarity=0.079 Sum_probs=145.5
Q ss_pred EEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226 114 IRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM 190 (434)
Q Consensus 114 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
|++.+..+.+...-+..+...|.+++|+|. .+..++.+..|+|.|+++...+..+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~--------------------- 233 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI--------------------- 233 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---------------------
Confidence 666666666666667788899999999995 57888999999999998776665553
Q ss_pred cCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCCCe-eEEEccc--CccCeEEEEEc------CCC-eEEEEeCCCeE
Q 046226 191 MKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRDSK-CIETIQA--HSEPINALVVA------DDG-VLYSASDDATV 259 (434)
Q Consensus 191 ~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~--~~~~v~~~~~~------~~~-~l~s~~~dg~i 259 (434)
.+ ..+++++|.-+ ..+++.|..+|.|.+||++..+ .+..+.+ ...+|..++.- +.+ +++....+ +
T Consensus 234 -a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l 309 (463)
T KOG1645|consen 234 -AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--L 309 (463)
T ss_pred -cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--h
Confidence 24 78999999876 4678889999999999998643 2222222 22344444332 223 44444432 5
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE-cCCC------e----------EEEEEcCccccccccc
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG-CTDG------Y----------IHYWHKGWFSAQLQYG 322 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg------~----------i~i~d~~~~~~~~~~~ 322 (434)
..|++....+ ...... ..+..+.+.++.+.+..+.++.. -.+. . -.||..+.... ..
T Consensus 310 ~f~ei~~s~~--~~p~vl-ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~-Gs-- 383 (463)
T KOG1645|consen 310 QFYEIVFSAE--CLPCVL-ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF-GS-- 383 (463)
T ss_pred hhhhhhcccc--CCCccc-ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc-CC--
Confidence 5676542111 111111 11223455566666644444333 2211 0 11221110000 00
Q ss_pred CcccCccc-ceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226 323 GALQGHTH-AVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400 (434)
Q Consensus 323 ~~~~~~~~-~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 400 (434)
...+-+.. .+.+. .+.+ .+..|+.-+.+.+||..+. ..++.+.- ..+|.++.....+ .+.+|++-.
T Consensus 384 ~~~kl~t~~ai~~~-~~nn~iv~~gd~tn~lil~D~~s~---evvQ~l~~-~epv~Dicp~~~n-------~~syLa~LT 451 (463)
T KOG1645|consen 384 KQTKLSTTQAIRAV-EDNNYIVVVGDSTNELILQDPHSF---EVVQTLAL-SEPVLDICPNDTN-------GSSYLALLT 451 (463)
T ss_pred cccccccccceecc-ccccEEEEecCCcceeEEeccchh---heeeeccc-CcceeecceeecC-------Ccchhhhee
Confidence 00001111 11111 1234 4455666789999999987 66666654 4788777766542 145666665
Q ss_pred cCCeEEEEecCC
Q 046226 401 LDGVLKMWRVTR 412 (434)
Q Consensus 401 ~Dg~v~iw~~~~ 412 (434)
|..++|+..++
T Consensus 452 -d~~v~Iyk~es 462 (463)
T KOG1645|consen 452 -DDRVHIYKNES 462 (463)
T ss_pred -cceEEEEecCC
Confidence 56889887654
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=7.4e-07 Score=84.44 Aligned_cols=149 Identities=11% Similarity=0.217 Sum_probs=117.2
Q ss_pred cccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCCEEEEEEc---------CCeEEEeecCCC
Q 046226 92 DGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHDRVYAAYG---------DGKIRVWRSTWD 162 (434)
Q Consensus 92 ~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~s~---------dg~i~vwd~~~~ 162 (434)
.+.|+-|+.+++++.+|...|+|.+-|..+.+.+.++.+|.+.|.++....+.|++++. |.-|+|||++.-
T Consensus 177 a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 177 ASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred CCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence 34577778899999999999999999999999999999999999999999999998875 677899999876
Q ss_pred CCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcCC---C-eeEEEcccCcc
Q 046226 163 NGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIRD---S-KCIETIQAHSE 237 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~---~-~~~~~~~~~~~ 237 (434)
..+..+.+ +.+ -.-+.|+|. ...+++++..|...+-|..+ . .-+..+.....
T Consensus 257 ral~PI~~----------------------~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 257 RALSPIQF----------------------PYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred hccCCccc----------------------ccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 66555532 112 244566775 45678888899999998432 2 12333333455
Q ss_pred CeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226 238 PINALVVADDG-VLYSASDDATVRVWR 263 (434)
Q Consensus 238 ~v~~~~~~~~~-~l~s~~~dg~i~iwd 263 (434)
.+..+++++++ .++.|..+|.|.+|-
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeec
Confidence 69999999999 999999999999996
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.62 E-value=6.2e-05 Score=74.22 Aligned_cols=238 Identities=11% Similarity=0.034 Sum_probs=140.9
Q ss_pred CCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCE
Q 046226 131 KTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDT 208 (434)
Q Consensus 131 ~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 208 (434)
....|.++.|..+ .++.+..+|.|.+-|..+......- .-...|.+++|+||+..
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-----------------------~vd~GI~aaswS~Dee~ 123 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-----------------------NVDNGISAASWSPDEEL 123 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-----------------------eccCceEEEeecCCCcE
Confidence 3468999999875 7888899999999876544221111 25567999999999999
Q ss_pred EEEEecCCcEEEEEcC----C-------------------CeeEEEcccC---------------------ccCeEEEEE
Q 046226 209 LYSASLDKTIKVWRIR----D-------------------SKCIETIQAH---------------------SEPINALVV 244 (434)
Q Consensus 209 l~s~~~dg~i~vwd~~----~-------------------~~~~~~~~~~---------------------~~~v~~~~~ 244 (434)
++..+.++++.+-+-. . |+.-..|.+. .+.=..|.|
T Consensus 124 l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW 203 (1265)
T KOG1920|consen 124 LALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW 203 (1265)
T ss_pred EEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE
Confidence 9999887877765431 1 1111112211 111235899
Q ss_pred cCCC-eEEEE----eCC-CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE---cCCCeEEEEEcCcc
Q 046226 245 ADDG-VLYSA----SDD-ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG---CTDGYIHYWHKGWF 315 (434)
Q Consensus 245 ~~~~-~l~s~----~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~ 315 (434)
..|| ++++. ..+ ..|++||.. ..+...-....+.-.+++|-|.|..+++- ..|+.|.+|.-+..
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drE-------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDRE-------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEeccc-------chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence 9999 65552 234 789999854 11111112222344679999999988875 34667999974322
Q ss_pred cccccccCcccCcccceEEEEee--CCEEEE---ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCC
Q 046226 316 SAQLQYGGALQGHTHAVMCLASV--ANYVIS---GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETE 390 (434)
Q Consensus 316 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 390 (434)
. ...+.-.+......+..+.|+ ++.|++ ......|++|-+.+- .+...+.+.-..... +.|+|..
T Consensus 277 ~-hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny-hWYLKq~l~~~~~~~--~~W~p~~------ 346 (1265)
T KOG1920|consen 277 R-HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY-HWYLKQELQFSQKAL--LMWDPVT------ 346 (1265)
T ss_pred c-ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe-EEEEEEEEecccccc--ccccCCC------
Confidence 1 222222333444458889997 456666 455556999998765 233333333333222 6666653
Q ss_pred CcccEEEEeecCCeEEEEec
Q 046226 391 DEYCTICTGSLDGVLKMWRV 410 (434)
Q Consensus 391 ~~~~~l~s~~~Dg~v~iw~~ 410 (434)
...|..-..+|.+.++++
T Consensus 347 --~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 347 --EKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred --ceeEEEEecCCcEEEEEE
Confidence 233333335555544443
No 317
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3e-05 Score=73.55 Aligned_cols=203 Identities=12% Similarity=0.166 Sum_probs=133.3
Q ss_pred cEEEEEEcCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc-EEEEEEeCC--EEEEEEcCC-----eEEEeecCCCCCc
Q 046226 94 QILCIAVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-VVAMEVSHD--RVYAAYGDG-----KIRVWRSTWDNGV 165 (434)
Q Consensus 94 ~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~~~--~l~~~s~dg-----~i~vwd~~~~~~~ 165 (434)
.|.|++-.+..+|.|+.+|.|.+.+ ...+.+..++.+... |..+....+ .|++.+.|+ .++||+++..+.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 7888888999999999999998887 455666778887777 555554444 677777654 5899998754221
Q ss_pred eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC----CeeEEEcccCccCeEE
Q 046226 166 KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD----SKCIETIQAHSEPINA 241 (434)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~ 241 (434)
.. ...+...............++.+++.+.+-+.+++|-.+|.|..+.-+- +....-......+|+.
T Consensus 106 ~s---------P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg 176 (933)
T KOG2114|consen 106 NS---------PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG 176 (933)
T ss_pred CC---------cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence 10 0011000110001112466889999999999999999999999885321 1211222234679999
Q ss_pred EEEcCCC-e-EEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 242 LVVADDG-V-LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 242 ~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
+++..++ . ++++ .-..|.+|.+. +.. .....+..+...+.|..+++....+++++ +..+.+||..
T Consensus 177 L~~~~d~~s~lFv~-Tt~~V~~y~l~---gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 177 LALRSDGKSVLFVA-TTEQVMLYSLS---GRT--PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD 243 (933)
T ss_pred eEEecCCceeEEEE-ecceeEEEEec---CCC--cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence 9999888 3 3443 34568899876 211 23444667778889999987666466655 4569999865
No 318
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.55 E-value=8.4e-05 Score=64.38 Aligned_cols=274 Identities=12% Similarity=0.110 Sum_probs=153.7
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEE----------cCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAY----------GDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
+.+.|+|..+++.+..+.. +..-.+..+|+ .+++++ ....|.+||..+-.....+.+...+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R---- 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR---- 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch----
Confidence 4799999999888877753 22333556776 455432 25679999988766555554422100
Q ss_pred eeEEEeccccccCcCCCeEEEEEecCCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCC
Q 046226 180 VRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDA 257 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 257 (434)
. ........++++.|++++++... -..|.|.|+..++.+.++.... +..+--..+..+.+-+.||
T Consensus 91 ----------~-~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 91 ----------A-QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp -------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTS
T ss_pred ----------h-eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecCCCceEEEecCC
Confidence 0 01122344578889998887643 4579999999999888776432 2222222233677888999
Q ss_pred eEEEEecccccCcceeEEEEEecccccCe-EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCccc----------
Q 046226 258 TVRVWRRYFYSENQLHTLILTLTAKYSPV-KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQ---------- 326 (434)
Q Consensus 258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------- 326 (434)
.+....+....... ......+.....++ ..-++...+..++--+.+|.|+-.|+..........-.+.
T Consensus 158 sl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 158 SLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp CEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred ceEEEEECCCCCEe-EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence 99888887333332 22222233333333 2344555666666688899999998875542221110100
Q ss_pred CcccceEEEEeeCCEEEEe---cC-----CC--cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEE
Q 046226 327 GHTHAVMCLASVANYVISG---SA-----DS--TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTI 396 (434)
Q Consensus 327 ~~~~~v~~~~~~~~~l~s~---~~-----dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l 396 (434)
...-.+.++....+.|++- +. |+ .|-++|+.++ +.+..+.. ..++.+|.++.+. ..+|
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---krv~Ri~l-~~~~~Si~Vsqd~--------~P~L 304 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---KRVARIPL-EHPIDSIAVSQDD--------KPLL 304 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---EEEEEEEE-EEEESEEEEESSS--------S-EE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---eEEEEEeC-CCccceEEEccCC--------CcEE
Confidence 0001123333223332221 11 22 3666677776 66766654 3457789998874 4566
Q ss_pred EEe-ecCCeEEEEecCCCCccc
Q 046226 397 CTG-SLDGVLKMWRVTRPKSSC 417 (434)
Q Consensus 397 ~s~-~~Dg~v~iw~~~~~~~~~ 417 (434)
.+. ..++.|.+||..+++...
T Consensus 305 ~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 305 YALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEETTTTEEEEEETTT--EEE
T ss_pred EEEcCCCCeEEEEeCcCCcEEe
Confidence 554 468999999999998654
No 319
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=0.00023 Score=65.73 Aligned_cols=207 Identities=6% Similarity=-0.045 Sum_probs=112.0
Q ss_pred eEEEecCCCceeEeeccCCCccEEEEEEeCC--E-EEEEEc---CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEec
Q 046226 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--R-VYAAYG---DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVG 186 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~-l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
.|.+-|..... ...+.... .+..-.|+|+ . ++..+. +..|.++|+.+++.....
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------------------ 229 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------------------ 229 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------------------
Confidence 55555553332 33233333 6778899997 3 444443 356788887655432221
Q ss_pred cccccCcCCCeEEEEEecCCCEEEEE-ec--CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-CCC--eE
Q 046226 187 KDKMMKHMGPITSIAINVSDDTLYSA-SL--DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS-DDA--TV 259 (434)
Q Consensus 187 ~~~~~~~~~~v~~~~~~~~~~~l~s~-~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~-~dg--~i 259 (434)
...+......|+|||+.++.. +. +..|.++|+.+++. ..+..+........|+||| .|+..+ ..+ .|
T Consensus 230 -----~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 230 -----SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNI 303 (419)
T ss_pred -----cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceE
Confidence 133445567899999877643 32 35788889887764 3444343334456899999 444443 444 45
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---------CeEEEEEcCcccccccccCcccCccc
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---------GYIHYWHKGWFSAQLQYGGALQGHTH 330 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~ 330 (434)
.+.|+. .+ ...... ..+. ....|+|+|+.|+..... ..|.+.|+...... .+.. .+. .
T Consensus 304 y~~dl~--~g-~~~rlt--~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~~~-~ 370 (419)
T PRK04043 304 FMKKLN--SG-SVEQVV--FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--NGV-N 370 (419)
T ss_pred EEEECC--CC-CeEeCc--cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--CCC-c
Confidence 555654 11 111111 1111 124899999988776543 36788887654322 1111 111 1
Q ss_pred ceEEEEeeCCEEEEecCC-C--cEEEEeccC
Q 046226 331 AVMCLASVANYVISGSAD-S--TSRVWAREQ 358 (434)
Q Consensus 331 ~v~~~~~~~~~l~s~~~d-g--~i~iwd~~~ 358 (434)
.-..++++|+.++....+ + .+.+.++..
T Consensus 371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 224455667765544432 2 355566654
No 320
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=0.00011 Score=67.97 Aligned_cols=190 Identities=14% Similarity=0.058 Sum_probs=108.7
Q ss_pred CeEEEEEecCCCE-EEEEec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e-EEEEeCC--CeEEEEecccc
Q 046226 196 PITSIAINVSDDT-LYSASL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V-LYSASDD--ATVRVWRRYFY 267 (434)
Q Consensus 196 ~v~~~~~~~~~~~-l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~d--g~i~iwd~~~~ 267 (434)
.+..-.|+|||+. ++..+. +..|+++|+.+++...... ..+......|+||| . +++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~-- 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN-- 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC--
Confidence 6778899999985 554433 3579999998887544433 44556678899999 4 4444444 456666765
Q ss_pred cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CC--eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEE
Q 046226 268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVIS 344 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 344 (434)
.... .. +..+........|+|||+.|+..+. .+ .|++.|+....... . ...+.. ...++++|++++.
T Consensus 266 -~g~~-~~---LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l--t~~g~~--~~~~SPDG~~Ia~ 335 (419)
T PRK04043 266 -TKTL-TQ---ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V--VFHGKN--NSSVSTYKNYIVY 335 (419)
T ss_pred -CCcE-EE---cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C--ccCCCc--CceECCCCCEEEE
Confidence 1111 11 2222222334579999987776653 33 57777775433311 1 111221 2356667887665
Q ss_pred ecCC---------CcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-C--eEEEEecCC
Q 046226 345 GSAD---------STSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-G--VLKMWRVTR 412 (434)
Q Consensus 345 ~~~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g--~v~iw~~~~ 412 (434)
.... ..|.+.|+.++.. ..+. .. +......|+|+ |+.|+-...+ + .+.+.+++.
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT---~~-~~~~~p~~SPD---------G~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI-RRLT---AN-GVNQFPRFSSD---------GGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe-EECC---CC-CCcCCeEECCC---------CCEEEEEEccCCcEEEEEEecCC
Confidence 5443 3678888877632 2222 21 22234778888 7766655432 3 355556554
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.2e-06 Score=76.61 Aligned_cols=207 Identities=18% Similarity=0.073 Sum_probs=140.0
Q ss_pred CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC---CeeEEEcccCccCeEEEEEcCCC-eEEEEeC-CCeEEEEeccc
Q 046226 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD---SKCIETIQAHSEPINALVVADDG-VLYSASD-DATVRVWRRYF 266 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-dg~i~iwd~~~ 266 (434)
-|...|+.+... -.+++.+++.||.++.|--.. -+.+..+..|...|.+++.+-++ ++.+.+. |..++++|+..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477878777654 467899999999999997543 24455667788999999999999 7777677 99999999872
Q ss_pred ccCcceeEEEEEecccccCeEEEEEec-CC---CEEEE-EcCCCeEEEEEcCcccccccccCcccCcccceEEEEee--C
Q 046226 267 YSENQLHTLILTLTAKYSPVKTLTLTL-DD---GLLYG-GCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--A 339 (434)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 339 (434)
..-.... .+.- ....+.|.- .| ..+++ .-.+|.+.++|-.....+.. ..-.-|..+|.++... +
T Consensus 86 ~Dminmi----KL~~---lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~--~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 86 FDMINMI----KLVD---LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG--YFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred cchhhhc----cccc---CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccc--eecccccCceEEEEeeccc
Confidence 2111111 1111 111122221 22 13333 34578999999654432222 2344688899988876 6
Q ss_pred CEEEEecCCCcEEEEeccCCC------------ceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 340 NYVISGSADSTSRVWAREQDG------------RHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 340 ~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
+.+++....|.|.-|..+..- ...-+..+.-......++.|+|+ +..+.+-+.|..|++
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~---------g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD---------GAQISTLNPDRKVRG 227 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc---------cCcccccCcccEEEE
Confidence 788888889999999887310 00112223334556788999999 899999999999999
Q ss_pred EecCCCCccc
Q 046226 408 WRVTRPKSSC 417 (434)
Q Consensus 408 w~~~~~~~~~ 417 (434)
+.+.+++...
T Consensus 228 F~~KtGklvq 237 (558)
T KOG0882|consen 228 FVFKTGKLVQ 237 (558)
T ss_pred EEeccchhhh
Confidence 9999987643
No 322
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.52 E-value=0.00027 Score=64.31 Aligned_cols=251 Identities=8% Similarity=0.062 Sum_probs=126.5
Q ss_pred cEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCce------eeEee----eccCCCCceeE-----------EEeccccc
Q 046226 134 MVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVK------HVKLA----TIPKTGGAVRN-----------LIVGKDKM 190 (434)
Q Consensus 134 ~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~------~~~~~----~~~~~~~~~~~-----------~~~~~~~~ 190 (434)
.|..+.|.++ .|+++...|.|.||.....+... ..... ........+.+ -..+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4778888886 78888888888888765443222 00000 00000111110 01111122
Q ss_pred cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc--c------CccCeEEEEEc-----CCC----eEEEE
Q 046226 191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ--A------HSEPINALVVA-----DDG----VLYSA 253 (434)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~----~l~s~ 253 (434)
....++|++++.+ |=.+++.|..+|.+.|.|++....+..-. . ....++++.|. .|+ .+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3457899999997 66799999999999999998877665521 1 23467788775 333 78999
Q ss_pred eCCCeEEEEeccc-ccCcceeEEEEEecccccCeEEEE-EecC--------------------CCEEEEEcCCCeEEEEE
Q 046226 254 SDDATVRVWRRYF-YSENQLHTLILTLTAKYSPVKTLT-LTLD--------------------DGLLYGGCTDGYIHYWH 311 (434)
Q Consensus 254 ~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--------------------~~~l~~~~~dg~i~i~d 311 (434)
...|.+.+|.+.- ..+............+.+++..+. ++.+ -..+++.+.+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998862 222222222323334556666555 3221 01344555677899998
Q ss_pred cCcccccccccCcccCcc-cceEEEE-----eeCCEEEEecCCCcEEEEeccCCCceeeEEEeec----cccceeEEEEe
Q 046226 312 KGWFSAQLQYGGALQGHT-HAVMCLA-----SVANYVISGSADSTSRVWAREQDGRHTMLAVLVG----HRGPIRCAIAF 381 (434)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----h~~~v~~~~~~ 381 (434)
....+...+. +..+. ....++. -.+..|++-..+|.|++|.+..- +.+....- +...+....++
T Consensus 242 ~~~~k~~~K~---~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L---kei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 242 PPKSKGAHKS---FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL---KEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp TT---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-EE-
T ss_pred CCCCccccee---eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc---hHhhcccCCCccccccccccEEC
Confidence 7644433222 11111 1112221 13557888899999999999886 44443333 22334556666
Q ss_pred ecccCCCCCCcccEEEEee
Q 046226 382 LGRFGEETEDEYCTICTGS 400 (434)
Q Consensus 382 ~~~~~~~~~~~~~~l~s~~ 400 (434)
++ |+.++-.|
T Consensus 316 ~~---------Gdi~~~~g 325 (395)
T PF08596_consen 316 RN---------GDIFYWTG 325 (395)
T ss_dssp TT---------S-EEEE-S
T ss_pred CC---------CCEEEEeC
Confidence 66 67665554
No 323
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.50 E-value=2.9e-05 Score=69.19 Aligned_cols=252 Identities=10% Similarity=0.058 Sum_probs=149.5
Q ss_pred EEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc
Q 046226 115 RIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH 193 (434)
Q Consensus 115 ~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
.+|+..+......+....-++..+.++|. .++....-..|.+|+-.....+..+ .
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~------------------------~ 70 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF------------------------R 70 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhccceEEccccchhheeee------------------------e
Confidence 45665555554455545667889999997 3333344455899987655443333 3
Q ss_pred CCCeEEEEEecCCCEEEEEecCC---------------cEEEEEcCCCeeEEEcccCccC--eE-EEEEcCCCeEEEEeC
Q 046226 194 MGPITSIAINVSDDTLYSASLDK---------------TIKVWRIRDSKCIETIQAHSEP--IN-ALVVADDGVLYSASD 255 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~l~s~~~ 255 (434)
...|..+.|+|.+++|.+=...+ .+.+||..++..+..+.....+ .. -+.|+-+..+++--.
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 34688999999999998765433 4999999999999998876554 44 567776662222224
Q ss_pred CCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC--EEEE-----EcCCCeEEEEEcCcccccccccCcccCc
Q 046226 256 DATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG--LLYG-----GCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 256 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
...+.|+++. ..........+ ....+....|+|.++ .|+. ...++.+++|.+........ ..+..-
T Consensus 151 ~~sl~i~e~t---~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t--k~lfk~ 223 (561)
T COG5354 151 GSSLYIHEIT---DNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT--KNLFKV 223 (561)
T ss_pred cCeEEEEecC---CccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee--eeeEee
Confidence 4568999863 11111111111 135678888888643 3333 35578899998863222111 111111
Q ss_pred ccceEEEEee--CCEEEEe-----------cCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccE
Q 046226 329 THAVMCLASV--ANYVISG-----------SADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCT 395 (434)
Q Consensus 329 ~~~v~~~~~~--~~~l~s~-----------~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 395 (434)
. -..+.|. |++|+.- -.+..++|+++... .+.....-.++|...+|.|. ++.
T Consensus 224 ~--~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~----~i~V~~~~~~pVhdf~W~p~---------S~~ 288 (561)
T COG5354 224 S--GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER----SIPVEKDLKDPVHDFTWEPL---------SSR 288 (561)
T ss_pred c--ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc----ccceeccccccceeeeeccc---------CCc
Confidence 1 1223332 5543321 12356888888743 22222255789999999998 444
Q ss_pred E--EEeecCCeEEEEecCC
Q 046226 396 I--CTGSLDGVLKMWRVTR 412 (434)
Q Consensus 396 l--~s~~~Dg~v~iw~~~~ 412 (434)
+ ++|-.+-.+.++|++.
T Consensus 289 F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 289 FAVISGYMPASVSVFDLRG 307 (561)
T ss_pred eeEEecccccceeeccccc
Confidence 4 4444677777777764
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.49 E-value=0.00032 Score=66.58 Aligned_cols=250 Identities=12% Similarity=0.061 Sum_probs=138.5
Q ss_pred CEEEEEeCCCeEEEecCCCceeEeeccCCCcc-----E-EEEEEeCCEEEEEE---------cCCeEEEeecCCCCCcee
Q 046226 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM-----V-VAMEVSHDRVYAAY---------GDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----v-~~l~~~~~~l~~~s---------~dg~i~vwd~~~~~~~~~ 167 (434)
+.++.++.++.|..+|.++++.+.+....... + ....+..+.++.++ .+|.+..+|..+++....
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 78888999999999999999998876643321 1 12233345666654 367889999988887776
Q ss_pred eEeeeccCCCCceeEEEeccccccCcC-CCe-EEEEEecCCCEEEEEecCC------------------cEEEEEcCCCe
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHM-GPI-TSIAINVSDDTLYSASLDK------------------TIKVWRIRDSK 227 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~~~~~~~~~~l~s~~~dg------------------~i~vwd~~~~~ 227 (434)
......... .... .........+. ..+ ...++.+.+..++.++.++ .|.-+|.++|+
T Consensus 191 ~~~~~~~~~--~~~~-~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 191 FYTTEPDPN--AFPT-WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeccCCCcC--CCCC-CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 654211000 0000 00000000011 111 1244555567777776665 79999999999
Q ss_pred eEEEcccCccCe-----------EEEE-EcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec
Q 046226 228 CIETIQAHSEPI-----------NALV-VADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL 293 (434)
Q Consensus 228 ~~~~~~~~~~~v-----------~~~~-~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 293 (434)
.+..++.-.... ..+. ..... .++.++.+|.+...|.. ++....+.... ...++.+|
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~--tG~~~W~~~~~-------~~~~~~~~ 338 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRT--TGKLISARPEV-------EQPMAYDP 338 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECC--CCcEeeEeEee-------ccccccCC
Confidence 988875321111 1111 11111 57788889999999887 33333322211 01122222
Q ss_pred CCCEEEEE------------------cCCCeEEEEEcCcccccccccCcccC------cccceEEEEeeCCEEEEecCCC
Q 046226 294 DDGLLYGG------------------CTDGYIHYWHKGWFSAQLQYGGALQG------HTHAVMCLASVANYVISGSADS 349 (434)
Q Consensus 294 ~~~~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~l~s~~~dg 349 (434)
..++.+ ..+|.|.-.|+.+.+...+....... -......+...++.|++++.||
T Consensus 339 --~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG 416 (488)
T cd00216 339 --GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG 416 (488)
T ss_pred --ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence 222221 23567777777666555443211000 0001123456788999999999
Q ss_pred cEEEEeccCCCceeeEEEee
Q 046226 350 TSRVWAREQDGRHTMLAVLV 369 (434)
Q Consensus 350 ~i~iwd~~~~~~~~~~~~~~ 369 (434)
.|+.+|..++ +.+..++
T Consensus 417 ~l~ald~~tG---~~lW~~~ 433 (488)
T cd00216 417 YFRAFDATTG---KELWKFR 433 (488)
T ss_pred eEEEEECCCC---ceeeEEE
Confidence 9999999998 4554443
No 325
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.35 E-value=0.00039 Score=63.23 Aligned_cols=210 Identities=12% Similarity=0.113 Sum_probs=115.3
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEcCCCee-------------------------------------------EEEc
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKC-------------------------------------------IETI 232 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------~~~~ 232 (434)
.|+.+.|.++...|++|...|.|.+|.....+. ..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478899999999999999999999986532211 1111
Q ss_pred ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecc------cccCeEEEEEec-----CC---CEE
Q 046226 233 QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTA------KYSPVKTLTLTL-----DD---GLL 298 (434)
Q Consensus 233 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l 298 (434)
....++|++++.+.-|+++.|..+|.+.|.|+| +..... ...+.. ....++++.|.. |+ -.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~R---GPavI~-~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLR---GPAVIY-NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETT---TTEEEE-EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECC---CCeEEe-eccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 234678999999988899999999999999998 211111 111222 234577787763 32 378
Q ss_pred EEEcCCCeEEEEEcCc-ccccc--cccCcccCcccceEEEEe-e-------------------C---CEEEEecCCCcEE
Q 046226 299 YGGCTDGYIHYWHKGW-FSAQL--QYGGALQGHTHAVMCLAS-V-------------------A---NYVISGSADSTSR 352 (434)
Q Consensus 299 ~~~~~dg~i~i~d~~~-~~~~~--~~~~~~~~~~~~v~~~~~-~-------------------~---~~l~s~~~dg~i~ 352 (434)
++|+..|.+.+|.+.. ..... .+......+..+|..+.. + | ..++....+..+|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 9999999999998742 11111 111111234444444431 1 1 1234444477899
Q ss_pred EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
++...+. +.........-....+.+.+... ...+..|++-..||.|+++.+..-+.+
T Consensus 239 v~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~----~~~~~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 239 VFKPPKS---KGAHKSFDDPFLCSSASVVPTIS----RNGGYCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp EE-TT------EEEEE-SS-EEEEEEEEEEEE-----EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred EEeCCCC---cccceeeccccccceEEEEeecc----cCCceEEEEEECCCcEEEEECCCchHh
Confidence 9998876 33332222212223344432000 001678999999999999999987654
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.35 E-value=0.0012 Score=56.61 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=124.3
Q ss_pred EEEEEEeCC---EEEEEEcC-CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226 135 VVAMEVSHD---RVYAAYGD-GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY 210 (434)
Q Consensus 135 v~~l~~~~~---~l~~~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 210 (434)
...++.+|. .++.+-.- ....+||..++.....+... ....+.+| -+|++||++|+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--------------~gRHFyGH------g~fs~dG~~Ly 66 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--------------PGRHFYGH------GVFSPDGRLLY 66 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--------------CCCEEecC------EEEcCCCCEEE
Confidence 345566663 34444443 34667887766655443210 00112244 57999999999
Q ss_pred EEec-----CCcEEEEEcC-CCeeEEEcccCccCeEEEEEcCCC-eEEEEeC-------CCeEE-----------EEecc
Q 046226 211 SASL-----DKTIKVWRIR-DSKCIETIQAHSEPINALVVADDG-VLYSASD-------DATVR-----------VWRRY 265 (434)
Q Consensus 211 s~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~-------dg~i~-----------iwd~~ 265 (434)
+.-. .|.|-|||.. +.+.+.++..|.-.-..+.+.||+ .|+.+.. .|.-+ +.|..
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred EeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 8744 4799999998 678888888887777889999999 5555421 12222 22222
Q ss_pred cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-------eEEEEEcCccccccccc-CcccCcccceEEEEe
Q 046226 266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-------YIHYWHKGWFSAQLQYG-GALQGHTHAVMCLAS 337 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~ 337 (434)
++.-..+....-..|...+..+++.++|..++..-..| -|.+++....-...... .....-...+-++++
T Consensus 147 --sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 147 --SGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred --CCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEE
Confidence 11111111111134667899999999988766654443 23444322110000000 011123346677777
Q ss_pred e--CCEE-EEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 338 V--ANYV-ISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 338 ~--~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
+ +.++ +|+=..+.+.+||..++ ..+....- ..+..++..++
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg---~~~~~~~l--~D~cGva~~~~ 268 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATG---RLLGSVPL--PDACGVAPTDD 268 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCC---CEeecccc--CceeeeeecCC
Confidence 5 4455 55556789999999988 44443322 22444555554
No 327
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.9e-05 Score=68.27 Aligned_cols=74 Identities=22% Similarity=0.186 Sum_probs=66.8
Q ss_pred CcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEeccc
Q 046226 192 KHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYF 266 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~ 266 (434)
.+...|.+++|+|... ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+. ++.+|..+|.|.+||++.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 5888999999999876 7888999999999999999999888877 789999998777 899999999999999983
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=5.5e-07 Score=85.06 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=131.7
Q ss_pred ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e-EEEEeCCC-eEEEEeccc
Q 046226 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V-LYSASDDA-TVRVWRRYF 266 (434)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~s~~~dg-~i~iwd~~~ 266 (434)
+..|....+|++|+.+.++|++|+..|.|+++++.+|........|..+|+-+.-+-+| . |.+++... -..+|++.
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~- 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS- 1175 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc-
Confidence 34688899999999999999999999999999999999999999999999999999888 4 44443333 57889876
Q ss_pred ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC--CEEEE
Q 046226 267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--NYVIS 344 (434)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 344 (434)
.......++ ..-.++.|+..-+.-+.|+......+||+.+......+.....+....-.+..|++ .+++
T Consensus 1176 ----s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1176 ----STGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred ----cccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 122222222 34456788776566667777788999999877665554333323333334555553 3433
Q ss_pred ecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 345 GSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 345 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
.|| .+||++.. ..+..|...... ..-.|+|. |..++.-++ |||+++-+.+
T Consensus 1247 --ndG--vLWDvR~~---~aIh~FD~ft~~-~~G~FHP~---------g~eVIINSE-----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIP---EAIHRFDQFTDY-GGGGFHPS---------GNEVIINSE-----IWDMRTFKLL 1296 (1516)
T ss_pred --eCc--eeeeeccH---HHHhhhhhheec-ccccccCC---------CceEEeech-----hhhhHHHHHH
Confidence 344 47999875 444444332211 12346666 777777663 7998876543
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.0016 Score=59.99 Aligned_cols=115 Identities=7% Similarity=0.090 Sum_probs=78.0
Q ss_pred CCeEEEEEec-CCCEEEEE----ecCCc----EEEEEcCCCee--EEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEE
Q 046226 195 GPITSIAINV-SDDTLYSA----SLDKT----IKVWRIRDSKC--IETIQ-AHSEPINALVVADDG-VLYSASDDATVRV 261 (434)
Q Consensus 195 ~~v~~~~~~~-~~~~l~s~----~~dg~----i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~i 261 (434)
....++.|+. +...+.+. +.+|. -++|++...+. +.... .....|.|++++|+. .++.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3446777775 34444443 33443 34566654432 11111 256789999999999 9999999999999
Q ss_pred EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
||... . ........-..+.++|+|+|..+++|+..|.+.+||+.....
T Consensus 286 yD~~~------~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 286 YDTTR------G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred EEcCC------C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 99761 1 111112334678899999999999999999999999864433
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.23 E-value=7.8e-07 Score=81.13 Aligned_cols=204 Identities=12% Similarity=0.157 Sum_probs=123.2
Q ss_pred ccEEEEEE----cCCEEEEEeCCCeEEEecCCCcee--EeeccCCCccEEEEEEeCC---EEEEEEc----CCeEEEeec
Q 046226 93 GQILCIAV----GNGFIYTGSDSNVIRIWKQPEFTE--CGRLKAKTSMVVAMEVSHD---RVYAAYG----DGKIRVWRS 159 (434)
Q Consensus 93 ~~v~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~---~l~~~s~----dg~i~vwd~ 159 (434)
..+.|++. +..++++|..+|.|-+-.+....- -....++...+++++|++- .|++|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34666666 345788899999998877654221 2334567788999999983 5555532 788999999
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCe
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPI 239 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v 239 (434)
.+.-.+..-. .. +.. +......+++|..+.+++++|.....+.++|++... .......+..+
T Consensus 137 ~s~ltvPke~--------~~---fs~------~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~v 198 (783)
T KOG1008|consen 137 NSLLTVPKES--------PL---FSS------STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYV 198 (783)
T ss_pred ccccCCCccc--------cc---ccc------ccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhc
Confidence 7652211000 00 000 122334588888889999999989999999997321 11122234466
Q ss_pred EEEEEcC-CCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC-EEEEE-cCCCeEEEEEcCc
Q 046226 240 NALVVAD-DGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG-LLYGG-CTDGYIHYWHKGW 314 (434)
Q Consensus 240 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~~dg~i~i~d~~~ 314 (434)
..+.+.| ..-.++...||.|.+||....-+................+..++|.|... .+++. -..++|++||+..
T Consensus 199 qG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7778887 33444455599999999321111111111111112223588999999432 34443 4467899999753
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.5e-05 Score=73.91 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=62.7
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++| .++++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 36679999999999999999999999998877666667799999999999999 99999999999999765
No 332
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=7e-07 Score=81.45 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=130.8
Q ss_pred cCCCeEEEEEecCC--CEEEEEecCCcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC--eEEEEe----CCCeEEEE
Q 046226 193 HMGPITSIAINVSD--DTLYSASLDKTIKVWRIRDSKC--IETIQAHSEPINALVVADDG--VLYSAS----DDATVRVW 262 (434)
Q Consensus 193 ~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~--~l~s~~----~dg~i~iw 262 (434)
....+.|+++.-+. ..+++|..+|.|-+-.++...- -....++..+.++++|++-. .|++|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567788776543 4678899999999988865432 23445677889999999864 677663 45679999
Q ss_pred ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEE---eeC
Q 046226 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLA---SVA 339 (434)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~---~~~ 339 (434)
|+...-..........- +......+++|..+.+++++|.....++++|++......... .+..+..+. |.+
T Consensus 135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NTKYVQGITVDPFSP 208 (783)
T ss_pred ecccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----hhhhcccceecCCCC
Confidence 98732111111111111 233456689999899999999999999999997433222211 111222232 467
Q ss_pred CEEEEecCCCcEEEEec-cCCCceeeEEEeeccc----cceeEEEEeecccCCCCCCcccEEEEeecC-CeEEEEecCC
Q 046226 340 NYVISGSADSTSRVWAR-EQDGRHTMLAVLVGHR----GPIRCAIAFLGRFGEETEDEYCTICTGSLD-GVLKMWRVTR 412 (434)
Q Consensus 340 ~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~v~iw~~~~ 412 (434)
+|+++-. ||.|.+||. .+-+ .++..+.... ..+..++|+|.+ ...+++...| ++|+++++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtr--------tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTR--------TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCC--------cchhhhhccCcceEEEecccc
Confidence 8988877 999999993 3221 2232222222 248899999986 4456666554 7899999863
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.19 E-value=0.0013 Score=58.99 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=109.5
Q ss_pred CcEEEEEcCCCeeEEEcccC-ccCeEEEE---EcCC----C-eEEEEeC----------CCeEEEEecccc-cCcceeEE
Q 046226 216 KTIKVWRIRDSKCIETIQAH-SEPINALV---VADD----G-VLYSASD----------DATVRVWRRYFY-SENQLHTL 275 (434)
Q Consensus 216 g~i~vwd~~~~~~~~~~~~~-~~~v~~~~---~~~~----~-~l~s~~~----------dg~i~iwd~~~~-~~~~~~~~ 275 (434)
+.|++.|..+.+.+..+.-. ...+.+++ +..+ . +++.|+. .|.|.++++... ........
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35888888888777665432 23444443 3322 3 6666643 289999998831 00112222
Q ss_pred EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEe
Q 046226 276 ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWA 355 (434)
Q Consensus 276 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd 355 (434)
+.. ....++|++++-- ++ .|+++. ++.|.+|++.... ......... ....+.++...+++++.|.....+.++.
T Consensus 82 i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~-~~~~i~sl~~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK-TLLKKAFYD-SPFYITSLSVFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS-SEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc-cchhhheec-ceEEEEEEeccccEEEEEEcccCEEEEE
Confidence 222 2346788888876 33 444443 5889999987555 122222222 2237888888899999999989898886
Q ss_pred ccCCCc-eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 356 REQDGR-HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 356 ~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
.+.... ...+.. ......++++.+.++ ++.++.+..+|.|.++..+.
T Consensus 156 ~~~~~~~l~~va~-d~~~~~v~~~~~l~d---------~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVAR-DYQPRWVTAAEFLVD---------EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEE-ESS-BEEEEEEEE-S---------SSEEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEe-cCCCccEEEEEEecC---------CcEEEEEcCCCeEEEEEECC
Confidence 654321 222222 233556888888866 56899999999999999874
No 334
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.16 E-value=0.00014 Score=70.76 Aligned_cols=199 Identities=10% Similarity=0.110 Sum_probs=118.1
Q ss_pred CCEEEEE-ecCCcEEEEEcCCCeeEEEcccCccC-eEEEEEcC------CCeEEEEeCCCeEEEEecccccCcceeEEEE
Q 046226 206 DDTLYSA-SLDKTIKVWRIRDSKCIETIQAHSEP-INALVVAD------DGVLYSASDDATVRVWRRYFYSENQLHTLIL 277 (434)
Q Consensus 206 ~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 277 (434)
.++|+.- .....|+-.|++.|+.+..+..+... |..++-.. ....+.|-.+..+..||.|.......... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~-~ 571 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ-S 571 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc-c
Confidence 3444433 45678999999999999999987754 66654321 11567788888999999994321111111 1
Q ss_pred EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEEEEe
Q 046226 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSRVWA 355 (434)
Q Consensus 278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~iwd 355 (434)
..........|++-+.+ .+||+|+.+|.|++||-- . ..-...+++-..+|.++.. +|+++++.+ +..|.+++
T Consensus 572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-G---KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred cccccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-c---hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 11123345677776655 578999999999999932 1 1222345566678888776 588776655 55677777
Q ss_pred cc--CCC-----------------ceeeEEEeeccccc-----eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 356 RE--QDG-----------------RHTMLAVLVGHRGP-----IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 356 ~~--~~~-----------------~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
.. .+. .+..+.--+.|... ...+.|.|..+..........|+|+ ....+.+|++.
T Consensus 646 t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivts-tG~f~v~Wnf~ 724 (794)
T PF08553_consen 646 TLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTS-TGPFVVTWNFK 724 (794)
T ss_pred EeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEe-ccCEEEEEEHH
Confidence 53 110 11122222223322 2446777766543222224445444 45689999987
Q ss_pred C
Q 046226 412 R 412 (434)
Q Consensus 412 ~ 412 (434)
.
T Consensus 725 k 725 (794)
T PF08553_consen 725 K 725 (794)
T ss_pred H
Confidence 4
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.15 E-value=0.00021 Score=69.60 Aligned_cols=145 Identities=12% Similarity=0.154 Sum_probs=100.2
Q ss_pred CEEEEE-eCCCeEEEecCCCceeEeeccCCCcc-EEEEEEe-------CCEEEEEEcCCeEEEeecCCCCCceeeEeeec
Q 046226 103 GFIYTG-SDSNVIRIWKQPEFTECGRLKAKTSM-VVAMEVS-------HDRVYAAYGDGKIRVWRSTWDNGVKHVKLATI 173 (434)
Q Consensus 103 ~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~~-------~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~ 173 (434)
++|+.- .....|+-.|++.|+.+..++.|... |..++-. +...++|-.+..+..||.+-... +...
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~---- 568 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVD---- 568 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceee----
Confidence 344443 44578888899999999999888754 6666543 23678888899999999875431 0000
Q ss_pred cCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEE
Q 046226 174 PKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253 (434)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 253 (434)
.............|++-..+| +||+|+.+|.|++||--..+....+.+-..+|..|.++.||..+.+
T Consensus 569 ------------~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 569 ------------SQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred ------------ccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 000011355567888776554 7999999999999995433333445667889999999999955555
Q ss_pred eCCCeEEEEecc
Q 046226 254 SDDATVRVWRRY 265 (434)
Q Consensus 254 ~~dg~i~iwd~~ 265 (434)
..+..|.+++..
T Consensus 636 Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 636 TCKTYLLLIDTL 647 (794)
T ss_pred eecceEEEEEEe
Confidence 556788888864
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=0.0031 Score=59.53 Aligned_cols=154 Identities=8% Similarity=-0.008 Sum_probs=85.4
Q ss_pred EecCCCEEEE-EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEe-------------------------
Q 046226 202 INVSDDTLYS-ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSAS------------------------- 254 (434)
Q Consensus 202 ~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~------------------------- 254 (434)
+.+||+.+.. .-..+.+.+.|.++.+...++.... ....+++++++ ++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4556765543 3345678888888877766655322 33456666666 444443
Q ss_pred ---------------CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCccccc
Q 046226 255 ---------------DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQ 318 (434)
Q Consensus 255 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 318 (434)
.++.|.+.|.+..... .......+ .-......+.++|||+++++++. +..|.|+|+......
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~-~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANA-GSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccC-CcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 1233555554410000 01111111 22345678899999999877655 889999998754421
Q ss_pred c----ccc----CcccCcccc-eEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226 319 L----QYG----GALQGHTHA-VMCLASVANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 319 ~----~~~----~~~~~~~~~-v~~~~~~~~~l~s~~~dg~i~iwd~~~ 358 (434)
. .+. ....--.++ -+.+.-.|+...+-..|..|..||+..
T Consensus 357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 110 111111111 133333456778888899999999876
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.10 E-value=0.0055 Score=53.62 Aligned_cols=244 Identities=14% Similarity=0.171 Sum_probs=126.0
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCc
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGA 179 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 179 (434)
.++.|+.|..+| |.+++.........+. +...|..+...++ .++..-.|+.+.++++..-...........+.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 788999999988 8899883322222222 2233999999886 334444569999999875433331110000000000
Q ss_pred eeEEEeccccccCcCCCeEEEE--EecCCCEEEEEecCCcEEEEEcCCC-----eeEEEcccCccCeEEEEEcCCCeEEE
Q 046226 180 VRNLIVGKDKMMKHMGPITSIA--INVSDDTLYSASLDKTIKVWRIRDS-----KCIETIQAHSEPINALVVADDGVLYS 252 (434)
Q Consensus 180 ~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~l~s 252 (434)
.........+...+ -...+...+.......|.+|..... +..+.+. -...+.+++|.++ .++.
T Consensus 84 --------~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v 153 (275)
T PF00780_consen 84 --------PTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICV 153 (275)
T ss_pred --------cccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEE
Confidence 00001233344444 1123333344444568888887653 3445554 3467889999844 5555
Q ss_pred EeCCCeEEEEecccccCcceeEEEEEe---------cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccC
Q 046226 253 ASDDATVRVWRRYFYSENQLHTLILTL---------TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGG 323 (434)
Q Consensus 253 ~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 323 (434)
|..++ ..+.|+.... ........ .....++..+... ++.+|++- |..-.+.|....... ..
T Consensus 154 ~~~~~-f~~idl~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~~~r---~~ 223 (275)
T PF00780_consen 154 GTSKG-FYLIDLNTGS---PSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGEPSR---KS 223 (275)
T ss_pred EeCCc-eEEEecCCCC---ceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCCcCc---cc
Confidence 55544 6677876211 11111000 0111233333333 45666543 333333344321111 11
Q ss_pred cccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeecc
Q 046226 324 ALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGH 371 (434)
Q Consensus 324 ~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h 371 (434)
.+.-. .....+.+...||++.+.+ .|.||++.++ +.++.+...
T Consensus 224 ~i~W~-~~p~~~~~~~pyli~~~~~-~iEV~~~~~~---~lvQ~i~~~ 266 (275)
T PF00780_consen 224 TIQWS-SAPQSVAYSSPYLIAFSSN-SIEVRSLETG---ELVQTIPLP 266 (275)
T ss_pred EEEcC-CchhEEEEECCEEEEECCC-EEEEEECcCC---cEEEEEECC
Confidence 22121 2456677777788887765 4999999998 666666543
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=0.0037 Score=51.49 Aligned_cols=140 Identities=14% Similarity=0.046 Sum_probs=89.6
Q ss_pred CEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEE
Q 046226 143 DRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWR 222 (434)
Q Consensus 143 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 222 (434)
.+++.|+..+.+..-|..+++...... -...|.+-+.- -|++++.|+..|.+++.+
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-----------------------lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------------LGVRIECSAIV-VGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-----------------------hCceeeeeeEE-ECCEEEEEEccCcEEEEE
Confidence 378888888888888887776655432 22233333332 377899999999999999
Q ss_pred cCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE
Q 046226 223 IRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG 301 (434)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 301 (434)
..+|...+.+.....--......+++ .+..|+.|+..+..|.+ ....+...+.......+=++.+....|+.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~------~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK------TYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc------ccceEEecccCCceeccceecCCCceEEEE
Confidence 99998887776443322233445566 99999999999999987 333343333333333334455534455555
Q ss_pred cCCCeEEEEEc
Q 046226 302 CTDGYIHYWHK 312 (434)
Q Consensus 302 ~~dg~i~i~d~ 312 (434)
...|.+.--..
T Consensus 154 ~t~G~vlavt~ 164 (354)
T KOG4649|consen 154 ITAGAVLAVTK 164 (354)
T ss_pred eccceEEEEcc
Confidence 56665554443
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=5.9e-05 Score=70.10 Aligned_cols=154 Identities=10% Similarity=0.101 Sum_probs=100.0
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSEN 270 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~ 270 (434)
+...|.--++...+++++.|+.-|.+++|+-..++....-. +..+.+..+.++++. ++++|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44455555666779999999999999999987766443322 234455556677777 8888889999999977631111
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEec
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGS 346 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 346 (434)
........-..|...|++++|++++..+++|...|+|..-.++....-......+-.-...|..++....+|++++
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVSt 187 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVST 187 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhh
Confidence 1111112223367899999999999999999999999998886521111111222233456666666555544443
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.0016 Score=60.18 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=111.5
Q ss_pred CCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEE
Q 046226 131 KTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTL 209 (434)
Q Consensus 131 ~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 209 (434)
.......+.++|+ ..++.+.||...++..... +. ...+.....+|.+ .+.+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~---r~------------------------k~~G~g~~~vw~~-~n~y 82 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAW---RN------------------------KAFGSGLSFVWSS-RNRY 82 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTT---EE------------------------EEEEE-SEEEE-T-SSEE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCC---cc------------------------cccCceeEEEEec-CccE
Confidence 3445688999998 6666688999999873211 11 1334456788888 5557
Q ss_pred EEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEE
Q 046226 210 YSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKT 288 (434)
Q Consensus 210 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 288 (434)
++-..++.|.++.--+.+....+... ..+..|.. | +|...+ ++.|.+||+. ....+..+... +|..
T Consensus 83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~-~~~i~~yDw~------~~~~i~~i~v~--~vk~ 149 (443)
T PF04053_consen 83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKS-SDFICFYDWE------TGKLIRRIDVS--AVKY 149 (443)
T ss_dssp EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEE-TTEEEEE-TT------T--EEEEESS---E-EE
T ss_pred EEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEEC-CCCEEEEEhh------HcceeeEEecC--CCcE
Confidence 77777888999632222222233321 23444433 6 454444 4489999987 44555555432 4899
Q ss_pred EEEecCCCEEEEEcCCCeEEEEEcCccccc------cc-ccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCc
Q 046226 289 LTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ------LQ-YGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGR 361 (434)
Q Consensus 289 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~-~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 361 (434)
+.|++++.+++..+.+ .+.|++....... .+ .......-...|.+..|.++.++-.+.. .|+. +-.| .
T Consensus 150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~G-e 224 (443)
T PF04053_consen 150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNG-E 224 (443)
T ss_dssp EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETT-E
T ss_pred EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcC-C
Confidence 9999999999988755 6777775432000 00 0011111134677777887755544444 5655 3333 1
Q ss_pred eeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 362 HTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 362 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
...+..+ ..++.=+.+.+. .+.+.....|+.|..+.++.
T Consensus 225 ~~~i~~l---d~~~yllgy~~~---------~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 225 TGIIAHL---DKPLYLLGYLPK---------ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEEE----SS--EEEEEETT---------TTEEEEE-TT--EEEEE--H
T ss_pred cceEEEc---CCceEEEEEEcc---------CCEEEEEECCCCEEEEEECH
Confidence 1233332 445666677764 56788888999998888763
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.08 E-value=0.002 Score=55.38 Aligned_cols=204 Identities=16% Similarity=0.101 Sum_probs=119.6
Q ss_pred CeEEEEEecC-CCEEEEEecCC-cEEEEEcCCCeeEEEcccCccCe--EEEEEcCCC-eEEEEe-----CCCeEEEEecc
Q 046226 196 PITSIAINVS-DDTLYSASLDK-TIKVWRIRDSKCIETIQAHSEPI--NALVVADDG-VLYSAS-----DDATVRVWRRY 265 (434)
Q Consensus 196 ~v~~~~~~~~-~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~-~l~s~~-----~dg~i~iwd~~ 265 (434)
....++.+|. ...++.+-.-| ...+||..+++....+....+.- -.-.|++|| +|++.- ..|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456777884 44555666555 47889999998887776433321 245789999 666653 35899999976
Q ss_pred cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-------CCeEEEEEcCccccccccc----------Ccc--c
Q 046226 266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-------DGYIHYWHKGWFSAQLQYG----------GAL--Q 326 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~----------~~~--~ 326 (434)
.....+..+..+.-....+.+.|||+.|+++-. .|.-++ ++.+....+.+. ..+ .
T Consensus 86 -----~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 86 -----RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred -----CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCcc
Confidence 345556667777777788999999988877632 123222 222222222211 112 3
Q ss_pred CcccceEEEEeeCC--EEEEecCCC-------cEEEEeccCCCceeeEEE----eeccccceeEEEEeecccCCCCCCcc
Q 046226 327 GHTHAVMCLASVAN--YVISGSADS-------TSRVWAREQDGRHTMLAV----LVGHRGPIRCAIAFLGRFGEETEDEY 393 (434)
Q Consensus 327 ~~~~~v~~~~~~~~--~l~s~~~dg-------~i~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~ 393 (434)
.|...|.-++++++ .++..-..| .|-+++.... ...+.. ...-.+-+-+|+++++ +
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~---------g 228 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRD---------G 228 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCC---------C
Confidence 45566766666533 222222222 1223322211 111110 1122456788999988 6
Q ss_pred cEE-EEeecCCeEEEEecCCCCcc
Q 046226 394 CTI-CTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 394 ~~l-~s~~~Dg~v~iw~~~~~~~~ 416 (434)
.++ +|+=.-|.+.+||..+++.+
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCCEe
Confidence 555 56667889999999988754
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.07 E-value=0.0081 Score=55.51 Aligned_cols=247 Identities=13% Similarity=0.104 Sum_probs=124.2
Q ss_pred eeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCce------eEeeccCCCccEEEEEEeCCEEEEEEcCCeEE
Q 046226 83 RCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFT------ECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR 155 (434)
Q Consensus 83 ~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~ 155 (434)
+.+.++.-..+.|.++.| +...|++-..||.++++|+.... .+.........+....+..++++.-..++.+.
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 344444434489999999 77788888899999999986333 11111222233334444445666666666665
Q ss_pred EeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC
Q 046226 156 VWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH 235 (434)
Q Consensus 156 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 235 (434)
+.+-.... .........+..... ...+........++.+....+....++.+.+.+-...+. +. .
T Consensus 151 ~v~n~~~~-~~~~~~~~~p~~~~~----------~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~ 215 (410)
T PF04841_consen 151 VVNNIDEP-VKLRRLPEIPGLWTK----------FHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-S 215 (410)
T ss_pred EEeCcccc-chhhccccCCCcccc----------cccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-C
Confidence 54322111 110011111110000 000111101133445555555555566676555433211 22 3
Q ss_pred ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 236 SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 236 ~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
.+++..|+++|++ +++.-..+|.+.+.+.. ..+....+.. .......+.|.-++..++.- ...|.+..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD------f~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg-- 285 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD------FSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG-- 285 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc------ccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC--
Confidence 4689999999999 78888888999888654 1222222222 23455677776553332222 23344432
Q ss_pred cccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccc
Q 046226 314 WFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR 372 (434)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~ 372 (434)
..+.-..+.+++..++..-.|| +||..-..- +.++..+...
T Consensus 286 --------------~~~~~~~~~~~~~~~l~~E~DG-~riit~~~~---~~l~~Vp~~~ 326 (410)
T PF04841_consen 286 --------------PDGDSISFWYDGPVILVSEIDG-VRIITSTSH---EFLQRVPDST 326 (410)
T ss_pred --------------CCCCceEEeccCceEEeccCCc-eEEEeCCce---EEEEECCHHH
Confidence 1111123334444445555566 777755433 4555544433
No 343
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=6.9e-06 Score=65.81 Aligned_cols=142 Identities=16% Similarity=0.082 Sum_probs=87.3
Q ss_pred eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc
Q 046226 249 VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 249 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
.+...+.||.|+-++++... ........+... .....-+..+++|+.+|.|.+|.......... ....-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k-----~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d---~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHK-----ESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSD---RVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhh-----hhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHH---hhhcc
Confidence 46666788888888876111 111111111111 11222356799999999999998752222111 12233
Q ss_pred ccceEEEEee---CCEEEEecCCCcEEEEeccCCCceeeEEEeeccc-cceeEEEEeecccCCCCCCcccEEEEe--ecC
Q 046226 329 THAVMCLASV---ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR-GPIRCAIAFLGRFGEETEDEYCTICTG--SLD 402 (434)
Q Consensus 329 ~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~--~~D 402 (434)
...|.++.+. +.+.++++.||.||.|++... +.+.....|. .++..+..+.. +.+|+.+ |.|
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~~~e~~ivv~s---------d~~i~~a~~S~d 168 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFESGEELIVVGS---------DEFLKIADTSHD 168 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCCCcceeEEecC---------CceEEeeccccc
Confidence 3455555554 448999999999999999877 5565556666 45555555544 5677777 788
Q ss_pred CeEEEEecCCC
Q 046226 403 GVLKMWRVTRP 413 (434)
Q Consensus 403 g~v~iw~~~~~ 413 (434)
..++.|++..-
T Consensus 169 ~~~k~W~ve~~ 179 (238)
T KOG2444|consen 169 RVLKKWNVEKI 179 (238)
T ss_pred hhhhhcchhhh
Confidence 88888887643
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.06 E-value=0.0069 Score=53.01 Aligned_cols=229 Identities=9% Similarity=0.076 Sum_probs=126.6
Q ss_pred EeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEE
Q 046226 140 VSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIK 219 (434)
Q Consensus 140 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 219 (434)
-..+.|+.|+.+| +.++++......... .+...|..+...++-+.|++-+ |+.++
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-----------------------~~~~~I~ql~vl~~~~~llvLs-d~~l~ 59 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-----------------------LKLSSITQLSVLPELNLLLVLS-DGQLY 59 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE-----------------------eecceEEEEEEecccCEEEEEc-CCccE
Confidence 3446899999888 899988322222222 1444499999999888877776 69999
Q ss_pred EEEcCCCeeEEEc--------------ccCccCeEEEE--EcCCC-eEEEEeCCCeEEEEecccccCccee-EEEEEecc
Q 046226 220 VWRIRDSKCIETI--------------QAHSEPINALV--VADDG-VLYSASDDATVRVWRRYFYSENQLH-TLILTLTA 281 (434)
Q Consensus 220 vwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 281 (434)
++++......... ......+...+ -...+ ..++......|.+|....... .. .....+.
T Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~--~f~~~~ke~~- 136 (275)
T PF00780_consen 60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN--SFSKLLKEIS- 136 (275)
T ss_pred EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc--cccceeEEEE-
Confidence 9999765433311 11223444444 11233 444455556899998773211 11 2222222
Q ss_pred cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc--------ccCcccceEEEEee-CCEEEEecCCCcEE
Q 046226 282 KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA--------LQGHTHAVMCLASV-ANYVISGSADSTSR 352 (434)
Q Consensus 282 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~v~~~~~~-~~~l~s~~~dg~i~ 352 (434)
....+..++|. ++.++.|..++ ..+.|+.+.....-.... ......++..+..+ +.+|++. |..-.
T Consensus 137 lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~ 211 (275)
T PF00780_consen 137 LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGV 211 (275)
T ss_pred cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEE
Confidence 23678888888 56777777555 677788744332111000 01112344455555 4455543 33444
Q ss_pred EEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 353 VWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 353 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
+.|.... ... ...+.- ...+.++++. ..+|+..+.+ .|.||++.+++..
T Consensus 212 fv~~~G~-~~r-~~~i~W-~~~p~~~~~~-----------~pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 212 FVNKNGE-PSR-KSTIQW-SSAPQSVAYS-----------SPYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred EEcCCCC-cCc-ccEEEc-CCchhEEEEE-----------CCEEEEECCC-EEEEEECcCCcEE
Confidence 4444332 111 122222 2345566665 4477777664 5999999999653
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.00 E-value=0.0049 Score=55.25 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=104.2
Q ss_pred CCEEEEEec---------C-CcEEEEEcCCC----eeEEEc--ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccC
Q 046226 206 DDTLYSASL---------D-KTIKVWRIRDS----KCIETI--QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSE 269 (434)
Q Consensus 206 ~~~l~s~~~---------d-g~i~vwd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 269 (434)
..+|++|+. . |.|.++++... ..+..+ ....++|++++-. ++.|+++. ++.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~-g~~l~v~~l~~~~- 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVAV-GNKLYVYDLDNSK- 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEEE-TTEEEEEEEETTS-
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEee-cCEEEEEEccCcc-
Confidence 467777654 2 88999999884 122222 2247889999887 44544433 4789999987222
Q ss_pred cceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecC
Q 046226 270 NQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSA 347 (434)
Q Consensus 270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 347 (434)
......... ....+.++... ++++++|+....+.++..+........... ......++++.+ +++.++.+..
T Consensus 119 --~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 119 --TLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp --SEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEET
T ss_pred --cchhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcC
Confidence 112222222 22255555554 679999999888888865432222222211 122334666665 4569999999
Q ss_pred CCcEEEEeccCC-----C---ceeeEEEeeccccceeEE---EEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 348 DSTSRVWAREQD-----G---RHTMLAVLVGHRGPIRCA---IAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 348 dg~i~iwd~~~~-----~---~~~~~~~~~~h~~~v~~~---~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
+|.+.++..... . .......+. ....|+++ .+.|. ...........++-++.+|.|...
T Consensus 193 ~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~-~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 193 DGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPR-SGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS---SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeec-CCCCcccccceEEEEecCCEEEEE
Confidence 999999988642 1 122233332 23456666 44441 000000013458888899998843
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0074 Score=51.05 Aligned_cols=204 Identities=9% Similarity=-0.008 Sum_probs=107.2
Q ss_pred CcCCCeEEEEEecCCC-EEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCCe-EEEEeCCCeEEEEeccccc
Q 046226 192 KHMGPITSIAINVSDD-TLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVADDGV-LYSASDDATVRVWRRYFYS 268 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~ 268 (434)
+-...+..++|+|+.+ ++++....+.|..++. +|+.++.+.-. .+....|++..++. +++--.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4556699999999866 4556666788888886 57877777543 35678999998884 4444458999999884222
Q ss_pred CcceeE----EEEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc--cccccc-----CcccCcccceEEEE
Q 046226 269 ENQLHT----LILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS--AQLQYG-----GALQGHTHAVMCLA 336 (434)
Q Consensus 269 ~~~~~~----~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-----~~~~~~~~~v~~~~ 336 (434)
...... ...... .++..+..++|++.++.|+++-+..-..+|.+.... ...... .........+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 211111 111122 345568999999998888888887777777765311 111000 00112223456777
Q ss_pred eeC---CEEEEecCCCcEEEEeccCCCceeeEEEeec-cc------cceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226 337 SVA---NYVISGSADSTSRVWAREQDGRHTMLAVLVG-HR------GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406 (434)
Q Consensus 337 ~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-h~------~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 406 (434)
+++ .+++.......|..+|.. +. ......+.. .. ...-.|++.++ |.+.++ ++-+..+
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~---------G~LYIv-sEpNlfy 245 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPD---------GNLYIV-SEPNLFY 245 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT-----------EEEE-ETTTEEE
T ss_pred EcCCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCC---------CCEEEE-cCCceEE
Confidence 764 477778888899999943 42 122233332 11 13556888877 654444 4555554
Q ss_pred EE
Q 046226 407 MW 408 (434)
Q Consensus 407 iw 408 (434)
++
T Consensus 246 ~f 247 (248)
T PF06977_consen 246 RF 247 (248)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.0093 Score=55.14 Aligned_cols=196 Identities=11% Similarity=0.105 Sum_probs=100.2
Q ss_pred eEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEecccccc
Q 046226 113 VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMM 191 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
.|+||+. .|+.+..+.-..+.|.++.|..+ .|++...||.++++|+.... .+.+.. .+....
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~------~i~~~~------- 124 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGE------EIEEEK------- 124 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhh------hccccC-------
Confidence 5999985 55666665544489999999887 88999999999999986332 221110 000000
Q ss_pred CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEc---cc-----Cc-cCeEE-EEEcCCC-eEEEEeCCCeE
Q 046226 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETI---QA-----HS-EPINA-LVVADDG-VLYSASDDATV 259 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~---~~-----~~-~~v~~-~~~~~~~-~l~s~~~dg~i 259 (434)
-....+....+..+|-.++ ..++.+.+.+-.... ....+ .. +. ..... ..+..+. ..+....++.+
T Consensus 125 v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i 202 (410)
T PF04841_consen 125 VLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETI 202 (410)
T ss_pred cccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEE
Confidence 0112222233333442223 234444443322211 11111 11 00 01111 1233333 34444445556
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA 339 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 339 (434)
.+.+-. .... ....+++..+++||++++++.-..+|.+.+.+.+..+...++. . ........|.|.|
T Consensus 203 ~~i~~~-----~~~~-----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~--~-~~~~~p~~~~WCG 269 (410)
T PF04841_consen 203 YIIDEN-----SFKQ-----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD--T-DSKSPPKQMAWCG 269 (410)
T ss_pred EEEEcc-----cccc-----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee--c-CcCCCCcEEEEEC
Confidence 544322 0000 1124689999999999999999999999998754332222221 1 1223445666666
Q ss_pred C
Q 046226 340 N 340 (434)
Q Consensus 340 ~ 340 (434)
+
T Consensus 270 ~ 270 (410)
T PF04841_consen 270 N 270 (410)
T ss_pred C
Confidence 5
No 348
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.96 E-value=0.001 Score=47.45 Aligned_cols=97 Identities=16% Similarity=0.242 Sum_probs=65.2
Q ss_pred EEEEEE---c---CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC-CEEEEEEcCCeEEEeecCCCCCcee
Q 046226 95 ILCIAV---G---NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH-DRVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 95 v~~~~~---~---~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
|++|++ + .+.|++|+.|..||+|+-. +.+.++... ..|.++.... ..++.+..+|+|-+|+-. .....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 566666 3 2689999999999999743 566666654 4567776655 489999999999999642 22222
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC---C-CEEEEEecCCcEE
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS---D-DTLYSASLDKTIK 219 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~l~s~~~dg~i~ 219 (434)
. +....+.++++..- | ..|++|-.+|.|-
T Consensus 77 i-----------------------KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 I-----------------------KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e-----------------------ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 13334666666532 2 3688888888764
No 349
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.96 E-value=0.0016 Score=46.59 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=69.4
Q ss_pred eEEEEEec---C-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226 197 ITSIAINV---S-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 197 v~~~~~~~---~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
|++|++.. + .+.|++|+.|..|++|+-+ +.+..+. ..+.|.++.-...+.++.+..+|+|-+|+-. ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~----~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS----QRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc----cee
Confidence 56666654 2 3689999999999999853 5666665 4567888888877899999999999999743 122
Q ss_pred eEEEEEecccccCeEEEEEec-C--C-CEEEEEcCCCeEEE
Q 046226 273 HTLILTLTAKYSPVKTLTLTL-D--D-GLLYGGCTDGYIHY 309 (434)
Q Consensus 273 ~~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~i 309 (434)
+... ....+.++++.. + | .-|++|-.+|.|-+
T Consensus 75 WRiK-----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIK-----SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeec-----cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2221 122355555543 2 2 36899999998743
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.91 E-value=0.019 Score=53.17 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=73.1
Q ss_pred EEEEEcCCC--eEEEE----eCCCe----EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEE
Q 046226 240 NALVVADDG--VLYSA----SDDAT----VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHY 309 (434)
Q Consensus 240 ~~~~~~~~~--~l~s~----~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 309 (434)
.++.|+-.. .+.+. +.+|. -.+|++. ..+........-.....+.+.+++|+...|+.|+.||.|.+
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~---r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECS---RNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEee---cCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 466666433 44433 23343 2455544 22333333344456678999999999999999999999999
Q ss_pred EEcCcccccccccCcccCcccceEEEEee--CCEEEEecCCCcEEEEeccCC
Q 046226 310 WHKGWFSAQLQYGGALQGHTHAVMCLASV--ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 310 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 359 (434)
||......... ...-....++|+ |..+++|+..|.+.+||+.-.
T Consensus 286 yD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99754322211 223345667775 669999999999999998643
No 351
>PHA02713 hypothetical protein; Provisional
Probab=97.85 E-value=0.0025 Score=61.48 Aligned_cols=192 Identities=6% Similarity=0.036 Sum_probs=102.1
Q ss_pred CCCEEEEEecC------CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCCeEEEEeCCC-----eEEEEecccccCcc
Q 046226 205 SDDTLYSASLD------KTIKVWRIRDSKC--IETIQAHSEPINALVVADDGVLYSASDDA-----TVRVWRRYFYSENQ 271 (434)
Q Consensus 205 ~~~~l~s~~~d------g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 271 (434)
++..++.|+.+ ..+..||..+..- +..+...... .+++...+...+.||.++ .+..||.. ..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~----~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMG----DD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECC----CC
Confidence 56667777753 3477888876542 1122111111 233333333667777654 47788865 12
Q ss_pred eeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-----------------------eEEEEEcCcccccccccCcccCc
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-----------------------YIHYWHKGWFSAQLQYGGALQGH 328 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~ 328 (434)
.+.....+.........+. -++.+.+.|+.++ .+..||.... .+.....+...
T Consensus 378 ~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~ 453 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTG 453 (557)
T ss_pred eEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCcc
Confidence 2333222222211122222 2567777776542 4677776532 33322222222
Q ss_pred ccceEEEEeeCCEEEEecCCC------cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC
Q 046226 329 THAVMCLASVANYVISGSADS------TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD 402 (434)
Q Consensus 329 ~~~v~~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D 402 (434)
.........++...+.|+.++ .+..||..+...+..+..+.........+++ + +.+.+.||.|
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~---------~~iyv~Gg~~ 522 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D---------NTIMMLHCYE 522 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C---------CEEEEEeeec
Confidence 222233455677777777542 4678998873356666666554444333333 2 7789999999
Q ss_pred C--eEEEEecCCCCcc
Q 046226 403 G--VLKMWRVTRPKSS 416 (434)
Q Consensus 403 g--~v~iw~~~~~~~~ 416 (434)
| .+..||..+.+-.
T Consensus 523 ~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 523 SYMLQDTFNVYTYEWN 538 (557)
T ss_pred ceeehhhcCccccccc
Confidence 8 7888888877643
No 352
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.82 E-value=0.034 Score=53.29 Aligned_cols=114 Identities=11% Similarity=0.076 Sum_probs=73.4
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccE----------EEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeE
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMV----------VAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVK 169 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v----------~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~ 169 (434)
.+..|++++.++.|.-.|..+++.+.++.... ..+ ..+++..+.++.++.|+.+...|..+++.+....
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 56778888888999999999999887764321 111 1245566788899999999999998888776654
Q ss_pred eeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe------cCCcEEEEEcCCCeeEEEcc
Q 046226 170 LATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS------LDKTIKVWRIRDSKCIETIQ 233 (434)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~ 233 (434)
..... ....+.+--.--++ .++++. .+|.|..+|.++|+.+..+.
T Consensus 148 ~~~~~------------------~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 148 NGDYK------------------AGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccc------------------ccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 31110 00011110000133 445443 26899999999999887754
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.74 E-value=0.036 Score=52.72 Aligned_cols=106 Identities=10% Similarity=-0.030 Sum_probs=69.4
Q ss_pred CCCEEEEEecCCcEEEEEcCC-----CeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc-----c-
Q 046226 205 SDDTLYSASLDKTIKVWRIRD-----SKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN-----Q- 271 (434)
Q Consensus 205 ~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~-----~- 271 (434)
+|++... .++.|.+.|..+ .+.+..+. -......+.++||| .++++..+..|.|.|+...... .
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~ 363 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP 363 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc
Confidence 4555554 256789999887 34444443 34456789999999 5556667899999998732210 0
Q ss_pred eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
.........- .......+|+++|+...+-.-|..|..||+..
T Consensus 364 ~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 364 RDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0111222221 23445678899998888888899999999864
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.031 Score=51.92 Aligned_cols=221 Identities=12% Similarity=0.110 Sum_probs=105.1
Q ss_pred ccccEEEEEE--cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCcee
Q 046226 91 KDGQILCIAV--GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 91 h~~~v~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
..-....+.+ +|+.+++++ ||.-.|+.......... +.-..+.|.++ .+++-...+.|.++.--.....+.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 3445677777 788888854 67777777444343322 23345667664 777777788899963222222222
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCC
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADD 247 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (434)
+. ....+..|-. |.+|+..+ ++.|.+||.++++.+..+... +|..+.|+++
T Consensus 105 i~-----------------------~~~~~~~If~---G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~ 155 (443)
T PF04053_consen 105 IK-----------------------LPFSVEKIFG---GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDD 155 (443)
T ss_dssp --------------------------SS-EEEEE----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TT
T ss_pred Ec-----------------------CCcccceEEc---CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECC
Confidence 21 1112333332 77777776 448999999999999998744 3899999999
Q ss_pred C-eEEEEeCCCeEEEEecccc-----cCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226 248 G-VLYSASDDATVRVWRRYFY-----SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY 321 (434)
Q Consensus 248 ~-~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 321 (434)
+ +++..+. ..+.+++.... ..................|.+.+|..+ .++-.+.. .|+.+- . .....
T Consensus 156 g~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~-~---Ge~~~ 227 (443)
T PF04053_consen 156 GELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLV-N---GETGI 227 (443)
T ss_dssp SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEE-T---TEEEE
T ss_pred CCEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEE-c---CCcce
Confidence 8 6655554 46777765421 000000011122222457888888765 44433333 666532 1 11111
Q ss_pred cCcccCcccceEEEEeeC--CEEEEecCCCcEEEEecc
Q 046226 322 GGALQGHTHAVMCLASVA--NYVISGSADSTSRVWARE 357 (434)
Q Consensus 322 ~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~ 357 (434)
...+ ..++.-+...+ +.+.....|+.|..+.+.
T Consensus 228 i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 228 IAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 1111 12233333334 677777777777777654
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.029 Score=49.32 Aligned_cols=211 Identities=9% Similarity=0.031 Sum_probs=115.3
Q ss_pred CEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE-EEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCcee
Q 046226 103 GFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM-EVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVR 181 (434)
Q Consensus 103 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l-~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
.++++--..+.|.-|+..+++... +.. .+.+.++ ......++.++..| +.+++.+.+..+..+... ..+
T Consensus 38 ~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~---~~~---- 107 (307)
T COG3386 38 ALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEP---EDG---- 107 (307)
T ss_pred EEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccc---cCC----
Confidence 356666677888888877553322 222 2223333 34444555555555 566666433332111100 000
Q ss_pred EEEeccccccCcCCCeEEEEEecCCCEEEEEec-----------CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-e
Q 046226 182 NLIVGKDKMMKHMGPITSIAINVSDDTLYSASL-----------DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-V 249 (434)
Q Consensus 182 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 249 (434)
......+.+...|+|.+-++... -|.|+.+|. .+..+..+..+-..-+.|+|+||+ .
T Consensus 108 ----------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 108 ----------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred ----------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 12245667778888876654332 133444443 466666666666677899999999 4
Q ss_pred EEEE-eCCCeEEEEecccccCccee-EEEEEecccccCeEEEEEecCCCEEEEEcCCC-eEEEEEcCcccccccccCccc
Q 046226 250 LYSA-SDDATVRVWRRYFYSENQLH-TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-YIHYWHKGWFSAQLQYGGALQ 326 (434)
Q Consensus 250 l~s~-~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~ 326 (434)
|+.+ +..+.|.-|++......... ..........+..-.++...+|.+-+++..+| .|.+|+.. .+.. ....
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~----~~i~ 251 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL----GEIK 251 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE----EEEE
Confidence 4444 45588888877521111111 22222333445666788888888776555554 89999865 2222 2222
Q ss_pred CcccceEEEEeeC
Q 046226 327 GHTHAVMCLASVA 339 (434)
Q Consensus 327 ~~~~~v~~~~~~~ 339 (434)
.....+.+++|-|
T Consensus 252 lP~~~~t~~~FgG 264 (307)
T COG3386 252 LPVKRPTNPAFGG 264 (307)
T ss_pred CCCCCCccceEeC
Confidence 3335567777755
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00045 Score=65.88 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=84.6
Q ss_pred eEEEEEecCCCEEEEEec----CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcc
Q 046226 197 ITSIAINVSDDTLYSASL----DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQ 271 (434)
Q Consensus 197 v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 271 (434)
-+-..|+|...+|++++- .|.|.||- ++|++..... -.-.+++++|+|.. .|+.|-.-|.+.+|...
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~------ 89 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN------ 89 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecC------
Confidence 344679999999988753 57888884 5666543322 12235679999999 88888889999999754
Q ss_pred eeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
..+.......|..+|..+.|+++|..++++..-|.|.+|.+.
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 444455566788999999999999999999999999999875
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.65 E-value=0.0002 Score=40.56 Aligned_cols=37 Identities=16% Similarity=0.465 Sum_probs=32.5
Q ss_pred eeeeEEEeeccccEEEEEE--cCCEEEEEeCCCeEEEec
Q 046226 82 YRCISSVLKKDGQILCIAV--GNGFIYTGSDSNVIRIWK 118 (434)
Q Consensus 82 ~~~~~~~~~h~~~v~~~~~--~~~~l~tg~~dg~i~iwd 118 (434)
++++..+..|...|.++.| .++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567778889999999999 578999999999999996
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.64 E-value=0.00016 Score=40.95 Aligned_cols=38 Identities=29% Similarity=0.518 Sum_probs=33.7
Q ss_pred eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEe
Q 046226 363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWR 409 (434)
Q Consensus 363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~ 409 (434)
.+...+..|...|.++.|.+. +.++++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD---------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC---------CCEEEEecCCCeEEEcC
Confidence 456677789999999999988 78999999999999996
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.067 Score=51.31 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=95.6
Q ss_pred EEcCCEEEEEeCCCeEEEecCCCceeEeeccCC--Cc--cEE-EEEEeCCEEEEEEc------CCeEEEeecCCCCCcee
Q 046226 99 AVGNGFIYTGSDSNVIRIWKQPEFTECGRLKAK--TS--MVV-AMEVSHDRVYAAYG------DGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 99 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~-~l~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~ 167 (434)
++.+..++.++.|+.|...|..+++.+...... .. .+. .-....+.++++.. +|.|..+|.++++.+..
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 445567888889999999999999998765431 11 111 11223456666643 68999999999887766
Q ss_pred eEeeeccCC---CCcee-EEEec-----cccccCcCCCeE-EEEEecCCCEEEEEecC-----C-----------cEEEE
Q 046226 168 VKLATIPKT---GGAVR-NLIVG-----KDKMMKHMGPIT-SIAINVSDDTLYSASLD-----K-----------TIKVW 221 (434)
Q Consensus 168 ~~~~~~~~~---~~~~~-~~~~~-----~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d-----g-----------~i~vw 221 (434)
......... ..... ....+ .+.+..-...+. .+++.+...+++.+..+ + .|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 543221100 00000 00000 000000112222 34666666666665421 2 68888
Q ss_pred EcCCCeeEEEcccCccCeE---------EEEEcCCC----eEEEEeCCCeEEEEecc
Q 046226 222 RIRDSKCIETIQAHSEPIN---------ALVVADDG----VLYSASDDATVRVWRRY 265 (434)
Q Consensus 222 d~~~~~~~~~~~~~~~~v~---------~~~~~~~~----~l~s~~~dg~i~iwd~~ 265 (434)
|+++|+....++.....+. -+.+..++ .++.+..+|.+.+.|.+
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~ 333 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRT 333 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECC
Confidence 9999999888775222211 12222243 57788999999999987
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.04 Score=48.45 Aligned_cols=179 Identities=13% Similarity=0.032 Sum_probs=97.6
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc-----CccCeEEEEEcCCCeEEEEeCCC----------
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA-----HSEPINALVVADDGVLYSASDDA---------- 257 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~s~~~dg---------- 257 (434)
+.+.+.++.....+..|+++. . -+.+++.+++..+..+.. .....+.+.+.|+|.+..+....
T Consensus 64 ~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~ 141 (307)
T COG3386 64 SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERP 141 (307)
T ss_pred CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCC
Confidence 444455555544555555554 3 367777765554332221 22456788889999666555441
Q ss_pred eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEcCcccccccc---cCcccCcccce-
Q 046226 258 TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHKGWFSAQLQY---GGALQGHTHAV- 332 (434)
Q Consensus 258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~---~~~~~~~~~~v- 332 (434)
.-.+|.+. ...........+-...+.|+|+||++.|+.+.. .+.|+-|++........- ........+..
T Consensus 142 ~G~lyr~~-----p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PD 216 (307)
T COG3386 142 TGSLYRVD-----PDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPD 216 (307)
T ss_pred cceEEEEc-----CCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCC
Confidence 11233332 011122223333445678999999988887765 488888887531111000 00111112222
Q ss_pred -EEEEeeCCEEEEecCCC-cEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 333 -MCLASVANYVISGSADS-TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 333 -~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
.++.-+|++.+++-.+| .|.+|+.+ + +.+..+.-....+++++|--
T Consensus 217 G~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 217 GMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred ceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCccceEeC
Confidence 33444566654544444 99999988 5 56666666667778888863
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.56 E-value=0.013 Score=56.60 Aligned_cols=146 Identities=9% Similarity=0.074 Sum_probs=78.3
Q ss_pred CCCEEEEEecCC-----cEEEEEcCCCe--eEEEcccCccCeEEEEEcCCC-eEEEEeCCC-------------------
Q 046226 205 SDDTLYSASLDK-----TIKVWRIRDSK--CIETIQAHSEPINALVVADDG-VLYSASDDA------------------- 257 (434)
Q Consensus 205 ~~~~l~s~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg------------------- 257 (434)
+++..+.|+.++ .+..||..+.+ .+..+....... +++.. ++ ..+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEE-CCEEEEEeCCCcccccccccccccccccccc
Confidence 577777787654 47889987653 222222111111 22222 45 666666542
Q ss_pred ----eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------CeEEEEEcCcccccccccCcccC
Q 046226 258 ----TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------GYIHYWHKGWFSAQLQYGGALQG 327 (434)
Q Consensus 258 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~ 327 (434)
.+..||.. ...+.....+....... +++ .-++++.+.|+.+ ..+..||..+. ..+.....+..
T Consensus 429 ~~~~~ve~YDP~----td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~-~~W~~~~~m~~ 501 (557)
T PHA02713 429 HSSNKVIRYDTV----NNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTY-NGWELITTTES 501 (557)
T ss_pred cccceEEEECCC----CCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCC-CCeeEccccCc
Confidence 46667755 12233222222111111 122 2246666667654 24677887631 23444444544
Q ss_pred cccceEEEEeeCCEEEEecCCC--cEEEEeccCC
Q 046226 328 HTHAVMCLASVANYVISGSADS--TSRVWAREQD 359 (434)
Q Consensus 328 ~~~~v~~~~~~~~~l~s~~~dg--~i~iwd~~~~ 359 (434)
..........++...++|+.|| .+..||..+.
T Consensus 502 ~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 502 RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 4444555566788899999888 7888888876
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.48 E-value=0.046 Score=52.83 Aligned_cols=225 Identities=12% Similarity=0.141 Sum_probs=118.5
Q ss_pred CCEEEEEeCC------CeEEEecCCCcee--EeeccCCCccEEEEEEeCC-EEEEEEcC------CeEEEeecCCCCCce
Q 046226 102 NGFIYTGSDS------NVIRIWKQPEFTE--CGRLKAKTSMVVAMEVSHD-RVYAAYGD------GKIRVWRSTWDNGVK 166 (434)
Q Consensus 102 ~~~l~tg~~d------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~-~l~~~s~d------g~i~vwd~~~~~~~~ 166 (434)
+.+++.|+.+ ..+..+|..+.+- ...+. ....-.+++..++ ..++|+.| .++..||...++...
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4456666666 3677888776532 22232 2333566677777 44556666 356677766555322
Q ss_pred eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCC-----cEEEEEcCCCe--eEEEcccCccCe
Q 046226 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDK-----TIKVWRIRDSK--CIETIQAHSEPI 239 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~--~~~~~~~~~~~v 239 (434)
...+. .......... -+|...++|+.|| +|-.||..+.+ .+..+......
T Consensus 364 ~a~M~--------------------~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~- 420 (571)
T KOG4441|consen 364 VAPMN--------------------TKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSG- 420 (571)
T ss_pred cCCcc--------------------CccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceee-
Confidence 11110 0111111111 2577888898886 47777776543 22222211111
Q ss_pred EEEEEcCCC-eEEEEeCCC------eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC-----eE
Q 046226 240 NALVVADDG-VLYSASDDA------TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG-----YI 307 (434)
Q Consensus 240 ~~~~~~~~~-~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i 307 (434)
.+++.. ++ ..++||.++ .+..||.. ...+.....+........ ++. -++.+.+.|+.|+ +|
T Consensus 421 ~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~----t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 421 HGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPE----TNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSV 493 (571)
T ss_pred eEEEEE-CCEEEEEcCcCCCccccceEEEEcCC----CCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceE
Confidence 122222 45 667777554 45677755 223333333332222222 222 2567778888776 36
Q ss_pred EEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCC-----cEEEEeccCC
Q 046226 308 HYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADS-----TSRVWAREQD 359 (434)
Q Consensus 308 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 359 (434)
..||..+ ..+............+.....++...++|+.|| +|..||..+.
T Consensus 494 E~ydp~~--~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 494 ERYDPET--NQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEEcCCC--CceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 7787653 333433444444555556667788888898887 4677776654
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00067 Score=62.62 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=74.2
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeE-EEEEcCCC-eEEEEeCCCeEEEEecccccCc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPIN-ALVVADDG-VLYSASDDATVRVWRRYFYSEN 270 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~ 270 (434)
-...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++..|...++ +++|.||| .|+.|-.||+|++.|+....
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~-- 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG-- 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC--
Confidence 34568889999999999999999999999998 788899987887777 99999999 99999999999999987211
Q ss_pred ceeEEEEEecccccCeEEEEEe
Q 046226 271 QLHTLILTLTAKYSPVKTLTLT 292 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~ 292 (434)
............|.++.|.
T Consensus 96 ---~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 ---RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ---ceeccccccccchheeecc
Confidence 1111122234567777775
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00058 Score=62.98 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=70.5
Q ss_pred CccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeE-EEEEecCCCE
Q 046226 132 TSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPIT-SIAINVSDDT 208 (434)
Q Consensus 132 ~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~ 208 (434)
...|.-+.|+|. .++.+..+|.|.+..+. -+.+..+. -+..+++ +++|.|||+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip----------------------~p~~~v~~sL~W~~DGkl 76 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIP----------------------IPGENVTASLCWRPDGKL 76 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEecc----------------------CCCCccceeeeecCCCCE
Confidence 446788899996 88999999999998876 33333332 1555666 9999999999
Q ss_pred EEEEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEcC
Q 046226 209 LYSASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVAD 246 (434)
Q Consensus 209 l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~ 246 (434)
|++|-.||+|++.|++++..+..+. .-...|.++.|.+
T Consensus 77 laVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 77 LAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999999988776632 2345677777753
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.028 Score=51.36 Aligned_cols=143 Identities=10% Similarity=0.132 Sum_probs=97.8
Q ss_pred EEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---------EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226 105 IYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK 175 (434)
Q Consensus 105 l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (434)
|.++.....++--|++.|+.+.+.+.+.. |.-+.+.|+ .-+.|-.|..|.-||.+-...- .+...
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~---- 422 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV---- 422 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee----
Confidence 44555556777779999999999988777 666777665 3566777899999998633221 11000
Q ss_pred CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeC
Q 046226 176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255 (434)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~ 255 (434)
...-........|.+-.. ..++++|+.+|.|++||--..+....+.+-..+|..+..+.+|..+.|..
T Consensus 423 -----------q~kqy~~k~nFsc~aTT~-sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 423 -----------QSKQYSTKNNFSCFATTE-SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred -----------eccccccccccceeeecC-CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 000012334456666554 45899999999999999733334445677888999999999996566666
Q ss_pred CCeEEEEecc
Q 046226 256 DATVRVWRRY 265 (434)
Q Consensus 256 dg~i~iwd~~ 265 (434)
+..+.+-++.
T Consensus 491 ~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 KTYLLLIDTL 500 (644)
T ss_pred ccEEEEEEEe
Confidence 7788888875
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0045 Score=56.26 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=93.7
Q ss_pred EEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC-------EEEEEecCCc
Q 046226 145 VYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD-------TLYSASLDKT 217 (434)
Q Consensus 145 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~s~~~dg~ 217 (434)
+..+.....++-.|++.++.+..++. + ..|.-+.+.|+.+ .-+.|-.|..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~----------------------~-~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~ 405 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKF----------------------E-DDINMVDITPDFKFAQLTSEQTLVGLSDNS 405 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeec----------------------c-CCcceeeccCCcchhcccccccEEeecCCc
Confidence 33444455566677777766666642 2 2266667766532 2345667889
Q ss_pred EEEEEcCCC-e-eEEEcccC----ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEE
Q 046226 218 IKVWRIRDS-K-CIETIQAH----SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTL 291 (434)
Q Consensus 218 i~vwd~~~~-~-~~~~~~~~----~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 291 (434)
|.-||.+-. + .+...+.| .....|.+-..+|++++|+.+|.||+||.. .......+++...+|..+..
T Consensus 406 vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri------~~~AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 406 VFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI------GRRAKTALPGLGDAIKHVDV 479 (644)
T ss_pred eEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh------hhhhhhcccccCCceeeEEe
Confidence 999998732 2 22222222 345678888888899999999999999854 23334456777889999999
Q ss_pred ecCCCEEEEEcCCCeEEEEEcC
Q 046226 292 TLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 292 ~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
+.+|++|++.| +..+.+.++.
T Consensus 480 tadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 480 TADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred eccCcEEEEec-ccEEEEEEEe
Confidence 99999988765 5667776654
No 367
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.41 E-value=0.029 Score=54.13 Aligned_cols=195 Identities=13% Similarity=0.164 Sum_probs=105.3
Q ss_pred EEEEEecCCCEEEEEecC------CcEEEEEcCCCeeE--EEcccCccCeEEEEEcCCC-eEEEEeCCCe-----EEEEe
Q 046226 198 TSIAINVSDDTLYSASLD------KTIKVWRIRDSKCI--ETIQAHSEPINALVVADDG-VLYSASDDAT-----VRVWR 263 (434)
Q Consensus 198 ~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~-----i~iwd 263 (434)
.++++. ++...++|+.| ..+..||..+.+-. ..+...... ..++.. +| ..+.||.||. +-.||
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~l-~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAVL-DGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEEE-CCEEEEEeccccccccccEEEec
Confidence 344443 46777888888 36778888766522 222222212 123333 45 7888888864 56666
Q ss_pred cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC------eEEEEEcCcccccccccCcccCcccceEEEEe
Q 046226 264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG------YIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS 337 (434)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~ 337 (434)
.. ...+.....+.......... .-+|.+.++|+.++ .+..||..+. .+.....+............
T Consensus 403 p~----~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 403 PV----TNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred CC----CCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceEEEE
Confidence 54 12222222222111111111 22677777777544 5677876533 33333333333333334556
Q ss_pred eCCEEEEecCCCc-----EEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCC-----eEEE
Q 046226 338 VANYVISGSADST-----SRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDG-----VLKM 407 (434)
Q Consensus 338 ~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg-----~v~i 407 (434)
++.+.+.||.|+. |..||..+. ++..+.........+..+... +...+.||.|| +|..
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~~~-----------~~ly~vGG~~~~~~l~~ve~ 542 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSAVGVVVLG-----------GKLYAVGGFDGNNNLNTVEC 542 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCccccccccEEEEC-----------CEEEEEecccCccccceeEE
Confidence 6778888888773 777888875 445554444444444333333 67888888887 4666
Q ss_pred EecCCCCc
Q 046226 408 WRVTRPKS 415 (434)
Q Consensus 408 w~~~~~~~ 415 (434)
||..+.+-
T Consensus 543 ydp~~d~W 550 (571)
T KOG4441|consen 543 YDPETDTW 550 (571)
T ss_pred cCCCCCce
Confidence 77666543
No 368
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.11 Score=47.71 Aligned_cols=196 Identities=16% Similarity=0.150 Sum_probs=121.8
Q ss_pred EEEEEeCC--EEEEE-EcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE
Q 046226 136 VAMEVSHD--RVYAA-YGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA 212 (434)
Q Consensus 136 ~~l~~~~~--~l~~~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 212 (434)
..++.++. .++.. ..++.|.+.|............ ......++++++++.++++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----------------------G~~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----------------------GLGPVGLAVDPDGKYVYVA 133 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----------------------ccCCceEEECCCCCEEEEE
Confidence 45556554 34443 3468899998665554444432 1256778999999888877
Q ss_pred ec---CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEE-EeCCCeEEEEecccccCcceeE-EEEEecccccCe
Q 046226 213 SL---DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYS-ASDDATVRVWRRYFYSENQLHT-LILTLTAKYSPV 286 (434)
Q Consensus 213 ~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~v 286 (434)
.. ++.+.+.|..+.+.+.....-..+ ..+++.|++ .++. -..++.|.+.|... ..... ............
T Consensus 134 n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~---~~v~~~~~~~~~~~~~~P 209 (381)
T COG3391 134 NAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG---NSVVRGSVGSLVGVGTGP 209 (381)
T ss_pred ecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC---cceeccccccccccCCCC
Confidence 65 689999999998888875544445 889999999 4444 44789999999651 11110 000011222345
Q ss_pred EEEEEecCCCEEEEEcCC---CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEe-cCCCcEEEEeccCC
Q 046226 287 KTLTLTLDDGLLYGGCTD---GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISG-SADSTSRVWAREQD 359 (434)
Q Consensus 287 ~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~i~iwd~~~~ 359 (434)
..+.+++++.++++.... +.+...|.............-.. ...-..+.+.|..+.+. ...+.+.+.|..+.
T Consensus 210 ~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 210 AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 678999999977766554 58888887644332221111111 22234556677766666 33578888888775
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.38 E-value=0.05 Score=52.62 Aligned_cols=150 Identities=14% Similarity=0.088 Sum_probs=79.6
Q ss_pred eEEEEEecCCCEEEEEecC------------CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEe
Q 046226 197 ITSIAINVSDDTLYSASLD------------KTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWR 263 (434)
Q Consensus 197 v~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd 263 (434)
...-.|+|+|+.+++.... +.+.+.+++.+.... ...+.|..+.|+||| .++... ++.|.+=-
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 6667888998877766422 234444444433322 234579999999999 555443 46776632
Q ss_pred cccccCcceeEE--EEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCC
Q 046226 264 RYFYSENQLHTL--ILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVAN 340 (434)
Q Consensus 264 ~~~~~~~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 340 (434)
+....... ..+ ...+. .....+.++.|..++.++ ++..++.-.+|.+.......... .-......+..++-+..
T Consensus 475 Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 475 VEQTEDGQ-YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS 551 (591)
T ss_pred EEeCCCCc-eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc
Confidence 22111111 111 11122 222346889999988854 55555555566543322221110 11112456677776666
Q ss_pred EEEEecCCCcEEE
Q 046226 341 YVISGSADSTSRV 353 (434)
Q Consensus 341 ~l~s~~~dg~i~i 353 (434)
.++....+|.+.+
T Consensus 552 ~iyv~~~~g~~~l 564 (591)
T PRK13616 552 TVYVTDARAVLQL 564 (591)
T ss_pred eEEEEcCCceEEe
Confidence 6666666764443
No 370
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.32 E-value=0.1 Score=47.48 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=43.3
Q ss_pred CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-cC----------------ccCeEEEEEcCCC-eEEEEe-
Q 046226 194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AH----------------SEPINALVVADDG-VLYSAS- 254 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~----------------~~~v~~~~~~~~~-~l~s~~- 254 (434)
...+....|+|+|+.++... ++.|.+++..+++..+... +. -+.-..+.|+||+ +|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 46688899999999999887 6789999988775433221 10 1123578899999 555443
Q ss_pred CCCeEEEEec
Q 046226 255 DDATVRVWRR 264 (434)
Q Consensus 255 ~dg~i~iwd~ 264 (434)
.+..|..+.+
T Consensus 121 d~~~v~~~~~ 130 (353)
T PF00930_consen 121 DEREVPEYPL 130 (353)
T ss_dssp E-TTS-EEEE
T ss_pred CCcCCceEEe
Confidence 4444544443
No 371
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.32 E-value=0.12 Score=47.01 Aligned_cols=51 Identities=10% Similarity=-0.057 Sum_probs=34.9
Q ss_pred CCeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCC
Q 046226 111 SNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWD 162 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~ 162 (434)
.+.+.|||+++++....... ...+....|+|+ ..++-..++.|.+++...+
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~ 73 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEETTEEEEESSTTS
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEecCceEEEECCCC
Confidence 46788999998765544333 667888999998 3333334788999987665
No 372
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.089 Score=44.60 Aligned_cols=264 Identities=11% Similarity=0.073 Sum_probs=151.4
Q ss_pred Eeecc-ccEEEEEEcCCEEEEEeCCC--eEEEecCCC---ceeEeeccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCC
Q 046226 88 VLKKD-GQILCIAVGNGFIYTGSDSN--VIRIWKQPE---FTECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 88 ~~~h~-~~v~~~~~~~~~l~tg~~dg--~i~iwd~~~---~~~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~ 161 (434)
+-+|- ..|..+...+.+-..|.... ..-+|+... ..++..+. -.+-+..+.++.++.+.+-++.-++|.|+.+
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~-~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~ 115 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVIN-ARDLFADVRVSEEYVYVADWSSGLRIVDIST 115 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEe-hhhhhheeEecccEEEEEcCCCceEEEeccC
Confidence 44554 45666666454444443222 233454431 12222222 3456788899999999999999999999987
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC---eeEEEcccCccC
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS---KCIETIQAHSEP 238 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~ 238 (434)
.......... .-.+.-.++.. .|++..++..|.-+.+.|+.+. +...++......
T Consensus 116 P~sP~~~~~l--------------------nt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d 173 (370)
T COG5276 116 PDSPTLIGFL--------------------NTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGD 173 (370)
T ss_pred CCCcceeccc--------------------cCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCC
Confidence 6554433210 11233444444 4899999887777888898654 334444444455
Q ss_pred eEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccc
Q 046226 239 INALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQ 318 (434)
Q Consensus 239 v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 318 (434)
-..++++.+ +-..+..|+-+.+.|+... ....++.... ....+.++..+++..+++.. +--+.+-|....+..
T Consensus 174 ~~~v~ISGn-~AYvA~~d~GL~ivDVSnp---~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp 246 (370)
T COG5276 174 THDVAISGN-YAYVAWRDGGLTIVDVSNP---HSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSP 246 (370)
T ss_pred ceeEEEecC-eEEEEEeCCCeEEEEccCC---CCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCc
Confidence 567777644 5555667888999998722 2222222222 22367777777665555544 334667777655543
Q ss_pred ccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEe
Q 046226 319 LQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAF 381 (434)
Q Consensus 319 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 381 (434)
..+..--......+..+...+++......+.-+.+-|+.+.........+......-..+..+
T Consensus 247 ~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay 309 (370)
T COG5276 247 TVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY 309 (370)
T ss_pred eEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe
Confidence 333211112223445567789988888888888888888764433333333222233344444
No 373
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.043 Score=50.72 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=90.1
Q ss_pred ceeEeeccCCCccEEEEEEeCC--EEEEE---EcC-CeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCC
Q 046226 122 FTECGRLKAKTSMVVAMEVSHD--RVYAA---YGD-GKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMG 195 (434)
Q Consensus 122 ~~~~~~~~~~~~~v~~l~~~~~--~l~~~---s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (434)
+.....+......+..-+|+++ .++.. ... ..+.++++..+....... ..+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------------~~g 238 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------------FNG 238 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------------cCC
Confidence 3333334444445566677776 22211 222 458888887766554442 233
Q ss_pred CeEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc
Q 046226 196 PITSIAINVSDDTLYSA-SLDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN 270 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~ 270 (434)
.-..-+|+|||+.|+-+ ..|| .|++.|+..+. +..+....+.-..=.|+||| .+++.+..|.-.||-......
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~- 316 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS- 316 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-
Confidence 33455799999887744 4555 57777887666 33454333333456789999 555666677766664441111
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCe--EEEEEcC
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGY--IHYWHKG 313 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~ 313 (434)
..... +. ....-..-.|+|||++++..+. +|. |.+.|+.
T Consensus 317 ~~~ri--T~--~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 317 QVTRL--TF--SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred ceeEe--ec--cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 11111 11 1122226678999999887764 344 5555543
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.23 E-value=0.058 Score=52.20 Aligned_cols=196 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred CCeEEEEEecCCCEEEEEe------cCC--cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC-CeEEEEec
Q 046226 195 GPITSIAINVSDDTLYSAS------LDK--TIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDD-ATVRVWRR 264 (434)
Q Consensus 195 ~~v~~~~~~~~~~~l~s~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d-g~i~iwd~ 264 (434)
..+...+++|+|+.++..- .|. .|.+++.. +.......+ .....-.|+|+| .+++.... ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678889999999887654 233 56666652 222222222 237788999997 66665433 22333221
Q ss_pred ccccCcceeEEEE-E--ec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc-cccccccc--Cccc-CcccceEEEE
Q 046226 265 YFYSENQLHTLIL-T--LT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW-FSAQLQYG--GALQ-GHTHAVMCLA 336 (434)
Q Consensus 265 ~~~~~~~~~~~~~-~--~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~--~~~~-~~~~~v~~~~ 336 (434)
. ...+...... . .. .....|..+.|+|||..++... +|.|++=-+.. ......+. ..+. +-...+..+.
T Consensus 427 ~--~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 P--ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred C--CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 1 0000000000 0 00 2245799999999999888765 57777732211 11111111 1111 1222346777
Q ss_pred ee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEE
Q 046226 337 SV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKM 407 (434)
Q Consensus 337 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~i 407 (434)
|. +..|+++..++...+|.+.-.+.......-.....++..++-.+. .|+....+|.+.+
T Consensus 504 W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-----------~iyv~~~~g~~~l 564 (591)
T PRK13616 504 WRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-----------TVYVTDARAVLQL 564 (591)
T ss_pred EecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-----------eEEEEcCCceEEe
Confidence 85 334566666665666665543322221111112566777777654 3555566764443
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.15 E-value=0.13 Score=45.17 Aligned_cols=231 Identities=14% Similarity=0.150 Sum_probs=113.4
Q ss_pred cCCEEEEEe----------CCCeEEEecCCCceeEeeccCCCc-cEEE------EEEeCC--EEEEE--EcCCeEEEeec
Q 046226 101 GNGFIYTGS----------DSNVIRIWKQPEFTECGRLKAKTS-MVVA------MEVSHD--RVYAA--YGDGKIRVWRS 159 (434)
Q Consensus 101 ~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v~~------l~~~~~--~l~~~--s~dg~i~vwd~ 159 (434)
+++.+++++ ....|.+||..+.....++.-..+ .... ++++.+ ++++. +--..|.|.|+
T Consensus 46 dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl 125 (342)
T PF06433_consen 46 DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDL 125 (342)
T ss_dssp TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEET
T ss_pred CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEEC
Confidence 677777642 345899999999888776544332 2222 233332 22221 12344455555
Q ss_pred CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC-CCEEEEEecCCcEEEEEcC-CCeeEEE----cc
Q 046226 160 TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS-DDTLYSASLDKTIKVWRIR-DSKCIET----IQ 233 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~-~~~~~~~----~~ 233 (434)
...+.+..+.. . . |...-|. .+-|.+-|.||.+.-..+. .|+...+ |.
T Consensus 126 ~~~kvv~ei~~-----------------------P-G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 126 AAKKVVGEIDT-----------------------P-G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp TTTEEEEEEEG-----------------------T-S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred CCCceeeeecC-----------------------C-C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 44433333211 1 1 1111232 3457788889999888887 4554322 11
Q ss_pred cCccCe-EEEEEcCC-CeEEEEeCCCeEEEEecccccCcceeEEEEEecc----------cccCeEEEEEecCCCEEEEE
Q 046226 234 AHSEPI-NALVVADD-GVLYSASDDATVRVWRRYFYSENQLHTLILTLTA----------KYSPVKTLTLTLDDGLLYGG 301 (434)
Q Consensus 234 ~~~~~v-~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~ 301 (434)
....++ ..-++... +.++-.+.+|.|+--|+... . ......... ..+.-.-+++++..+.|++-
T Consensus 180 ~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~--~--~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 180 PDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD--S--AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp TTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS--S--EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred CCCcccccccceECCCCeEEEEecCCEEEEEeccCC--c--ccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 122222 22333333 36666889999998887621 1 111111111 11233457777766555553
Q ss_pred c--------CCC--eEEEEEcCcccccccccCcccCcccceEEEEeeC--C-EEE-EecCCCcEEEEeccCCCceeeEEE
Q 046226 302 C--------TDG--YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA--N-YVI-SGSADSTSRVWAREQDGRHTMLAV 367 (434)
Q Consensus 302 ~--------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~ 367 (434)
- .|+ .|-+||+.+.+..... .. ...+.+++.+. + +|+ ....++.+.+||..++ +.+..
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri----~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~ 327 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARI----PL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRS 327 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEE----EE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEE----eC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEee
Confidence 2 123 3555565443332221 11 22455666652 2 554 4456899999999998 55554
Q ss_pred ee
Q 046226 368 LV 369 (434)
Q Consensus 368 ~~ 369 (434)
+.
T Consensus 328 ~~ 329 (342)
T PF06433_consen 328 IE 329 (342)
T ss_dssp E-
T ss_pred hh
Confidence 43
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.003 Score=62.16 Aligned_cols=111 Identities=19% Similarity=0.373 Sum_probs=81.0
Q ss_pred CccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEE
Q 046226 132 TSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYS 211 (434)
Q Consensus 132 ~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 211 (434)
...+.+.+.-...++.|+..|.+-..|..+.-...... ..-.++|++++|+.+|..++.
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~n---------------------e~v~~~Vtsvafn~dg~~l~~ 147 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQN---------------------ERVQGPVTSVAFNQDGSLLLA 147 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcC---------------------CccCCcceeeEecCCCceecc
Confidence 34455555555578888989999888876531100000 025679999999999999999
Q ss_pred EecCCcEEEEEcCCCeeEEEcccCccCeEEEEE---cCCC-eEEEEeCCCeEEEEecc
Q 046226 212 ASLDKTIKVWRIRDSKCIETIQAHSEPINALVV---ADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 212 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
|-.+|.|.+||+..++.++.+..|..+.+.+-+ ..++ .++++...|. +|.+.
T Consensus 148 G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 148 GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 999999999999999999988887776665543 3344 7888888886 56543
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.07 E-value=0.15 Score=43.25 Aligned_cols=204 Identities=9% Similarity=0.066 Sum_probs=109.4
Q ss_pred EeeccccEEEEEE--c-CCEEEEEeCCCeEEEecCCCceeEeeccCC-CccEEEEEEeCC-EEEEEEc-CCeEEEeecCC
Q 046226 88 VLKKDGQILCIAV--G-NGFIYTGSDSNVIRIWKQPEFTECGRLKAK-TSMVVAMEVSHD-RVYAAYG-DGKIRVWRSTW 161 (434)
Q Consensus 88 ~~~h~~~v~~~~~--~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~-~l~~~s~-dg~i~vwd~~~ 161 (434)
+.+-...+..++| + +.++++....+.|...+. +++.+.++.-. -+-.-.|++..+ .++.... ++.+.++++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3344456999999 3 557777888889988886 57777776533 245788888876 5555554 89999998854
Q ss_pred CCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC---CeeEEE--c---
Q 046226 162 DNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRD---SKCIET--I--- 232 (434)
Q Consensus 162 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~---~~~~~~--~--- 232 (434)
.... ...... .+..+ ....++..+..++|.+.++.|+.+.+..-..+|.+.. ...+.. .
T Consensus 96 ~~~~~~~~~~~----------~~~l~--~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~ 163 (248)
T PF06977_consen 96 DTTSLDRADVQ----------KISLG--FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDL 163 (248)
T ss_dssp --TT--EEEEE----------EEE-----S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHH
T ss_pred cccccchhhce----------EEecc--cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccc
Confidence 3221 111100 01100 0013667799999999988888888887777777653 111111 1
Q ss_pred ---ccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEecc-------cccCeEEEEEecCCCEEEE
Q 046226 233 ---QAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-------KYSPVKTLTLTLDDGLLYG 300 (434)
Q Consensus 233 ---~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~ 300 (434)
......+.+++++|.. +++....+..|..+|.. +. ... ...+.. .-.....|+|.++|++.++
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~---G~-~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ---GR-VVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------EEE-EEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC---CC-EEE-EEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 1133457889999876 77777888899999854 11 111 222222 1135788999999866555
Q ss_pred EcCCCeEEEE
Q 046226 301 GCTDGYIHYW 310 (434)
Q Consensus 301 ~~~dg~i~i~ 310 (434)
+ +-+..++|
T Consensus 239 s-EpNlfy~f 247 (248)
T PF06977_consen 239 S-EPNLFYRF 247 (248)
T ss_dssp E-TTTEEEEE
T ss_pred c-CCceEEEe
Confidence 4 55544444
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.01 E-value=0.25 Score=44.79 Aligned_cols=197 Identities=11% Similarity=0.068 Sum_probs=85.9
Q ss_pred CCEEEEEe-CCCeEEEecCCC----ceeEeeccC---CC----ccEEEEEEeCC--EEEEEEc------CCeEEEeecCC
Q 046226 102 NGFIYTGS-DSNVIRIWKQPE----FTECGRLKA---KT----SMVVAMEVSHD--RVYAAYG------DGKIRVWRSTW 161 (434)
Q Consensus 102 ~~~l~tg~-~dg~i~iwd~~~----~~~~~~~~~---~~----~~v~~l~~~~~--~l~~~s~------dg~i~vwd~~~ 161 (434)
.++|+..+ ..+.|.|.|+.+ -+..+.+.. +. ..-..+..-|+ .++++-. -|.+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 55676666 678999999874 333343332 11 11122222333 3444322 25566666554
Q ss_pred CCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEe--------------------cCCcEEEE
Q 046226 162 DNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSAS--------------------LDKTIKVW 221 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------------------~dg~i~vw 221 (434)
.+.....+... +...--.++-+.|..+.+++.. ...++.+|
T Consensus 167 f~v~g~We~~~-------------------~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW 227 (461)
T PF05694_consen 167 FEVKGRWEKDR-------------------GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW 227 (461)
T ss_dssp --EEEE--SB--------------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred ccccceeccCC-------------------CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence 43333332110 1122334555566666665543 24689999
Q ss_pred EcCCCeeEEEcccCc--cCeEEEEEcCC--C--eEEEEeCCCeEEEEecccccCcceeEEEEEeccc-------------
Q 046226 222 RIRDSKCIETIQAHS--EPINALVVADD--G--VLYSASDDATVRVWRRYFYSENQLHTLILTLTAK------------- 282 (434)
Q Consensus 222 d~~~~~~~~~~~~~~--~~v~~~~~~~~--~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------------- 282 (434)
|+.+.+.++++.... .....|.|..+ . -++.+.-..+|..|-... .+.-..+.+..+...
T Consensus 228 D~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 228 DWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp ETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred ECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccc
Confidence 999999999887543 24556766533 3 344444445555543211 111112222222111
Q ss_pred ----ccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCccccc
Q 046226 283 ----YSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQ 318 (434)
Q Consensus 283 ----~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~ 318 (434)
..-|+.|.+|.|+++|++.+ ..|.|+.||+......
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 23478999999999988765 4899999999865443
No 379
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.2 Score=42.53 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=163.3
Q ss_pred ccccEEEEEEcCCEEEEEeCCCeEEEecCCCceeEe---eccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCcee
Q 046226 91 KDGQILCIAVGNGFIYTGSDSNVIRIWKQPEFTECG---RLKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 91 h~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
-.+.+..+.+.+++++.+..+.-++|.|+.+..... .+. -.+--.++..+.++.+.+..|.-+.+.|+........
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 345566777789999999999999999997644332 222 2256688888999888888777788899876544332
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe---eEEEcccCccCeEEEEE
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK---CIETIQAHSEPINALVV 244 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~ 244 (434)
.-... .....-..++.+ |++-+.+..|+-+.+-|+.... .+.... ....+.++..
T Consensus 164 agrya-------------------~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~v 221 (370)
T COG5276 164 AGRYA-------------------LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSV 221 (370)
T ss_pred eeeec-------------------cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEe
Confidence 21111 122333566665 8888888899999999996543 222222 2337888888
Q ss_pred cCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCc
Q 046226 245 ADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGA 324 (434)
Q Consensus 245 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 324 (434)
+++--+++....| +.+-|... .......-. .....++..-.+.-.+++......+.-+.+-|+......... ..
T Consensus 222 sdnr~y~vvy~eg-vlivd~s~---~ssp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~-ss 295 (370)
T COG5276 222 SDNRAYLVVYDEG-VLIVDVSG---PSSPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLS-SS 295 (370)
T ss_pred cCCeeEEEEcccc-eEEEecCC---CCCceEeec-cccCCcccccceecccceeeeeccccCceeEeccCCCCCchh-cc
Confidence 8776344333333 55556551 111111111 122222222133335678888888888888888654433221 12
Q ss_pred ccCcccceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226 325 LQGHTHAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV 404 (434)
Q Consensus 325 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 404 (434)
+......-..+...++++..+..+ ...+-+.... +......+....+.+.+.+-+ .+.+.+...++.
T Consensus 296 ~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~---s~m~~~~g~~ti~~s~~v~~~---------~q~~y~~d~~~g 362 (370)
T COG5276 296 LDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPP---SMMDKRPGRPTIGQSCDVSVD---------TQIIYSTDYNGG 362 (370)
T ss_pred ccCCCccccceEEecCeeEeccCC-ceEEEeCCCh---hhcccccCcceEeeecceEEE---------eeEEEEeecCCC
Confidence 222222345566677877777666 5555565543 111111222222333333333 568888999999
Q ss_pred EEEEecC
Q 046226 405 LKMWRVT 411 (434)
Q Consensus 405 v~iw~~~ 411 (434)
+.||+..
T Consensus 363 l~i~~~~ 369 (370)
T COG5276 363 LSIIEYL 369 (370)
T ss_pred EEEEEec
Confidence 9999863
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.0031 Score=51.00 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=79.6
Q ss_pred EEeCCCeEEEecCCCceeEee-ccCCCccEEEEEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEe
Q 046226 107 TGSDSNVIRIWKQPEFTECGR-LKAKTSMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIV 185 (434)
Q Consensus 107 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (434)
.-+.||.|+-+++...+.-.+ -..+... ..+.-....+++|+.+|.|.+|.............
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--------------- 98 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC--------------- 98 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhh---------------
Confidence 345678887777654332211 1111111 22222234789999999999998763222111100
Q ss_pred ccccccCcCCCeEE-EEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc-cCeEEEEEcCCC-eEEEE--eCCCeEE
Q 046226 186 GKDKMMKHMGPITS-IAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS-EPINALVVADDG-VLYSA--SDDATVR 260 (434)
Q Consensus 186 ~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~s~--~~dg~i~ 260 (434)
.-...|.+ |.-..++.+..+++.||.|+.|++.-.+.+.....|. .++..+.....+ .+..+ +.|..++
T Consensus 99 ------s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 99 ------SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLK 172 (238)
T ss_pred ------cccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhh
Confidence 11122222 2223355688899999999999999888777776676 444444444333 66666 7777788
Q ss_pred EEecc
Q 046226 261 VWRRY 265 (434)
Q Consensus 261 iwd~~ 265 (434)
.|++.
T Consensus 173 ~W~ve 177 (238)
T KOG2444|consen 173 KWNVE 177 (238)
T ss_pred hcchh
Confidence 88765
No 381
>PHA03098 kelch-like protein; Provisional
Probab=96.91 E-value=0.12 Score=50.14 Aligned_cols=190 Identities=8% Similarity=0.043 Sum_probs=88.9
Q ss_pred cCCCEEEEEecCC------cEEEEEcCCCeeEEE--cccCccCeEEEEEcCCCeEEEEeCC-----CeEEEEecccccCc
Q 046226 204 VSDDTLYSASLDK------TIKVWRIRDSKCIET--IQAHSEPINALVVADDGVLYSASDD-----ATVRVWRRYFYSEN 270 (434)
Q Consensus 204 ~~~~~l~s~~~dg------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 270 (434)
.++..++.|+.++ .+..||..+.+-... +....... +++...+..++.||.+ ..+..||...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~---- 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFNNRIYVIGGIYNSISLNTVESWKPGE---- 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEECCEEEEEeCCCCCEecceEEEEcCCC----
Confidence 3456666666542 577888876553221 11111111 2233323366677755 3466677651
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEcCC------CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEE
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVIS 344 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 344 (434)
..+.....+....... +++ .-+++..+.|+.+ ..+..||..+. .+.....+........+...++..++.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECCEEEEE
Confidence 1222221111111111 122 2256666666632 45788887643 222222222111112233445666666
Q ss_pred ecCCC--------cEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecC
Q 046226 345 GSADS--------TSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVT 411 (434)
Q Consensus 345 ~~~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~ 411 (434)
|+.++ .+.+||..+. .+..+..+....... +++.. + +.+++.||.+ ..|.++|..
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~-~W~~~~~~~~~r~~~-~~~~~-~---------~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTN-KWTELSSLNFPRINA-SLCIF-N---------NKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred CCccCCCCCcccceEEEecCCCC-ceeeCCCCCcccccc-eEEEE-C---------CEEEEEcCCcCCcccceeEEEeCC
Confidence 76432 3888898875 233332222111111 12222 3 6677777764 478888877
Q ss_pred CCC
Q 046226 412 RPK 414 (434)
Q Consensus 412 ~~~ 414 (434)
+.+
T Consensus 512 ~~~ 514 (534)
T PHA03098 512 TNT 514 (534)
T ss_pred CCE
Confidence 654
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.043 Score=54.55 Aligned_cols=108 Identities=15% Similarity=0.257 Sum_probs=74.2
Q ss_pred cccEEEEEEcCCEEEEEeCCCeEEEecCCCc-eeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceee
Q 046226 92 DGQILCIAVGNGFIYTGSDSNVIRIWKQPEF-TECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHV 168 (434)
Q Consensus 92 ~~~v~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~ 168 (434)
...+.+.+..+..++.|++.|.|-..|+... .....-..-.++|.+++|+.+ .++.|-.+|.|.+||+..++..+.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 4456666668888999999999998887542 111222234678999999987 6777778999999999887777666
Q ss_pred EeeeccCCCCceeEEEeccccccCcCCC---eEEEEEecCCCEEEEEecCCcEEEEEc
Q 046226 169 KLATIPKTGGAVRNLIVGKDKMMKHMGP---ITSIAINVSDDTLYSASLDKTIKVWRI 223 (434)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~s~~~dg~i~vwd~ 223 (434)
.. |..+ |..+.+..++..++++...|. +|.+
T Consensus 169 ~e----------------------~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TE----------------------HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ee----------------------cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 43 3333 333334445567788877776 5554
No 383
>PHA02790 Kelch-like protein; Provisional
Probab=96.89 E-value=0.14 Score=48.71 Aligned_cols=185 Identities=9% Similarity=0.058 Sum_probs=90.3
Q ss_pred CCCEEEEEecCC-----cEEEEEcCCCeeEE--EcccCccCeEEEEEcCCC-eEEEEeCC--CeEEEEecccccCcceeE
Q 046226 205 SDDTLYSASLDK-----TIKVWRIRDSKCIE--TIQAHSEPINALVVADDG-VLYSASDD--ATVRVWRRYFYSENQLHT 274 (434)
Q Consensus 205 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~ 274 (434)
++..+++|+.++ .+..||..+.+-.. .+...... .+++.. ++ ..+.||.+ ..+..||.. ...+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~-~~~iYviGG~~~~~sve~ydp~----~n~W~ 344 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPA-NNKLYVVGGLPNPTSVERWFHG----DAAWV 344 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEEE-CCEEEEECCcCCCCceEEEECC----CCeEE
Confidence 455566776543 46678877654322 22211111 222333 45 66666653 357777754 12232
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEcCCC---eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcE
Q 046226 275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDG---YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTS 351 (434)
Q Consensus 275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i 351 (434)
....+....... ++ ..-+|+..+.|+.++ .+..||.++. .+.....+............++...+.|+ .+
T Consensus 345 ~~~~l~~~r~~~-~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~ 417 (480)
T PHA02790 345 NMPSLLKPRCNP-AV-ASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVGR---NA 417 (480)
T ss_pred ECCCCCCCCccc-EE-EEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceEEEECCEEEEECC---ce
Confidence 222222111111 12 223567777776543 4677886532 33332222222222233345566666664 57
Q ss_pred EEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecC-----CeEEEEecCCCC
Q 046226 352 RVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLD-----GVLKMWRVTRPK 414 (434)
Q Consensus 352 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~D-----g~v~iw~~~~~~ 414 (434)
.+||.+++ .+..+..+........ ++.. + +++.+.||.+ ..|..||..+.+
T Consensus 418 e~ydp~~~-~W~~~~~m~~~r~~~~-~~v~-~---------~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSN-TWTLIDDPIYPRDNPE-LIIV-D---------NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCC-cEeEcCCCCCCccccE-EEEE-C---------CEEEEECCcCCCcccceEEEEECCCCe
Confidence 78998765 4454444332222222 2222 2 6788888865 357777776554
No 384
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.83 E-value=0.53 Score=47.12 Aligned_cols=124 Identities=9% Similarity=0.027 Sum_probs=74.1
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCcc--------EEEEEEe------------------CCEEEEEEcCCeE
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSM--------VVAMEVS------------------HDRVYAAYGDGKI 154 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~l~~~------------------~~~l~~~s~dg~i 154 (434)
.++.|+.++.++.|.-.|..+++.+.++...... ...+.+. .+.++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 5778888888999999999999988876543211 1223332 2378899999999
Q ss_pred EEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec--CCCEEEEEec----------CCcEEEEE
Q 046226 155 RVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV--SDDTLYSASL----------DKTIKVWR 222 (434)
Q Consensus 155 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~----------dg~i~vwd 222 (434)
.-.|.++++.+..+.... .+. +..... .....-..+.-.| .+..+++|+. +|.|+-+|
T Consensus 273 iALDA~TGk~~W~fg~~G------~vd-l~~~~g---~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D 342 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNG------TVD-LTAGMG---TTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD 342 (764)
T ss_pred EEEECCCCCEEEEecCCC------cee-eecccC---cCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence 999998888776552110 000 000000 0000000000001 1345555532 68899999
Q ss_pred cCCCeeEEEccc
Q 046226 223 IRDSKCIETIQA 234 (434)
Q Consensus 223 ~~~~~~~~~~~~ 234 (434)
+++|+.+..+..
T Consensus 343 a~TGkl~W~~~~ 354 (764)
T TIGR03074 343 VNTGALVWAWDP 354 (764)
T ss_pred CCCCcEeeEEec
Confidence 999999988763
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.72 E-value=0.0051 Score=36.63 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=30.6
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCee
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKC 228 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 228 (434)
....|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 4457999999999999999999999999998 5544
No 386
>PHA03098 kelch-like protein; Provisional
Probab=96.69 E-value=0.22 Score=48.27 Aligned_cols=157 Identities=9% Similarity=0.017 Sum_probs=73.0
Q ss_pred CCCEEEEEecC-----CcEEEEEcCCCeeE--EEcccCccCeEEEEEcCCCeEEEEeCC------CeEEEEecccccCcc
Q 046226 205 SDDTLYSASLD-----KTIKVWRIRDSKCI--ETIQAHSEPINALVVADDGVLYSASDD------ATVRVWRRYFYSENQ 271 (434)
Q Consensus 205 ~~~~l~s~~~d-----g~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~ 271 (434)
++..++.|+.+ ..+..||..+.+-. ..+...... .+++...+..++.||.+ ..+..||+.. .
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t----~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNVNNLIYVIGGISKNDELLKTVECFSLNT----N 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEECCEEEEECCcCCCCcccceEEEEeCCC----C
Confidence 56677777755 35777887765421 111111111 12233333356666632 3577888651 1
Q ss_pred eeEEEEEecccccCeEEEEEecCCCEEEEEcCC--------CeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226 272 LHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD--------GYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI 343 (434)
Q Consensus 272 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 343 (434)
.+............. ++ ..-++..++.|+.+ ..+.+||..+. .+.....+.........+..++..++
T Consensus 417 ~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv 492 (534)
T PHA03098 417 KWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIFNNKIYV 492 (534)
T ss_pred eeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEECCEEEE
Confidence 222222111111111 22 22355666666543 23788887643 22222222111111223344667777
Q ss_pred EecCC-----CcEEEEeccCCCceeeEEEeecc
Q 046226 344 SGSAD-----STSRVWAREQDGRHTMLAVLVGH 371 (434)
Q Consensus 344 s~~~d-----g~i~iwd~~~~~~~~~~~~~~~h 371 (434)
.|+.+ ..+.+||..+. .+..+..+...
T Consensus 493 ~GG~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~ 524 (534)
T PHA03098 493 VGGDKYEYYINEIEVYDDKTN-TWTLFCKFPKV 524 (534)
T ss_pred EcCCcCCcccceeEEEeCCCC-EEEecCCCccc
Confidence 77754 46888888765 33444433333
No 387
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.061 Score=49.79 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=88.4
Q ss_pred cCCCeEEEEEecCCCEEEEE---ecC-CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEeccc
Q 046226 193 HMGPITSIAINVSDDTLYSA---SLD-KTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYF 266 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~ 266 (434)
-...+..-+|+|++..++-. ... ..+.++|+++++....+. ..+.-..-.|+||| ++++...||...+|-+..
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 34456667888888776543 222 459999999886544443 23334456899999 666777777765554331
Q ss_pred ccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCe--EEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226 267 YSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGY--IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI 343 (434)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 343 (434)
.... .. .+....+.-..=.|+|||+.++..+. .|. |.++|.+..... .+ +..+.......++.+|++++
T Consensus 270 ~~~~-~~----~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-ri--T~~~~~~~~p~~SpdG~~i~ 341 (425)
T COG0823 270 DGKN-LP----RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RL--TFSGGGNSNPVWSPDGDKIV 341 (425)
T ss_pred CCCc-ce----ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Ee--eccCCCCcCccCCCCCCEEE
Confidence 1221 11 12222233335578999998776644 554 445554432221 11 22222222344556788777
Q ss_pred EecC-CCc--EEEEeccCCC
Q 046226 344 SGSA-DST--SRVWAREQDG 360 (434)
Q Consensus 344 s~~~-dg~--i~iwd~~~~~ 360 (434)
..+. +|. |.+.|+.++.
T Consensus 342 ~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 342 FESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEeccCCceeeEEeccCCCC
Confidence 6654 344 6666776653
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.56 E-value=0.67 Score=43.33 Aligned_cols=200 Identities=10% Similarity=0.087 Sum_probs=105.7
Q ss_pred eEEEEEecCCCEEEEE-ecCC----cEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCC----------CeE
Q 046226 197 ITSIAINVSDDTLYSA-SLDK----TIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDD----------ATV 259 (434)
Q Consensus 197 v~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d----------g~i 259 (434)
+....++|++++++.+ +..| .|+++|+++++.+...-... ....+.|.+++ ++.+...+ ..|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467889999998855 3334 59999999998765432111 22249999997 44444332 236
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC---C-CeEEEEEcCcc---cccccccCcccCcccce
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---D-GYIHYWHKGWF---SAQLQYGGALQGHTHAV 332 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~---~~~~~~~~~~~~~~~~v 332 (434)
+.|++. .....-..+............+..++++++|+.... + ..+.+.|+... ...... ......+..
T Consensus 205 ~~~~~g--t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~--l~~~~~~~~ 280 (414)
T PF02897_consen 205 YRHKLG--TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKL--LSPREDGVE 280 (414)
T ss_dssp EEEETT--S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEE--EEESSSS-E
T ss_pred EEEECC--CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEE--EeCCCCceE
Confidence 677665 222222233333222222667888999998876433 2 45777777643 112221 111122222
Q ss_pred EEEEeeCCEEEEec----CCCcEEEEeccCCCceeeEEEeecccc--ceeEEEEeecccCCCCCCcccEEEEeecCC--e
Q 046226 333 MCLASVANYVISGS----ADSTSRVWAREQDGRHTMLAVLVGHRG--PIRCAIAFLGRFGEETEDEYCTICTGSLDG--V 404 (434)
Q Consensus 333 ~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg--~ 404 (434)
..+...+..+..-+ .++.|...++...........+..|.. .+..+.... +.+++..-.++ .
T Consensus 281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~----------~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK----------DYLVLSYRENGSSR 350 (414)
T ss_dssp EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET----------TEEEEEEEETTEEE
T ss_pred EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC----------CEEEEEEEECCccE
Confidence 33444466333322 245677777777643122335555655 355555442 34566666665 4
Q ss_pred EEEEecC
Q 046226 405 LKMWRVT 411 (434)
Q Consensus 405 v~iw~~~ 411 (434)
|+++++.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 7788888
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.49 E-value=0.37 Score=39.56 Aligned_cols=216 Identities=10% Similarity=0.098 Sum_probs=112.9
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEe-eccCCCccEEEEEE--e--CCEEEEEEc-CCeEEEeecCCCCCceeeEeeecc
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECG-RLKAKTSMVVAMEV--S--HDRVYAAYG-DGKIRVWRSTWDNGVKHVKLATIP 174 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~--~--~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~ 174 (434)
.+.++++--..|.|.-||+++.+... .+.+. ++.++.+ . |...++++. .-.|.-||......+....+.++.
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 45566666667777779987744322 23322 1222222 1 223333333 333445664432222111111111
Q ss_pred CCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEec----------CCcEEEEEcCCCeeEEEcccCccCeEEEEE
Q 046226 175 KTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASL----------DKTIKVWRIRDSKCIETIQAHSEPINALVV 244 (434)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 244 (434)
.. ......++-..+|+|+++ .|.. .|.++.|-.. ..+..+...-.--+.++|
T Consensus 104 ~d---------------~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 104 PD---------------RKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAW 165 (310)
T ss_pred ch---------------HHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccc
Confidence 00 123455666778999884 3432 2344444432 122222223334467888
Q ss_pred cCCC--eEEEEeCCCeEEEEecccccCcce-eEEEEEecc----cccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccc
Q 046226 245 ADDG--VLYSASDDATVRVWRRYFYSENQL-HTLILTLTA----KYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSA 317 (434)
Q Consensus 245 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 317 (434)
+.+. +.++-+.+-.|.-||.....+... ...+..+.. .....-.+++..+|++.++.-..++|..+|..+.+.
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~ 245 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKI 245 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence 8776 566677788888888542222211 112222211 111233456677888888888899999999876665
Q ss_pred cccccCcccCcccceEEEEeeCC
Q 046226 318 QLQYGGALQGHTHAVMCLASVAN 340 (434)
Q Consensus 318 ~~~~~~~~~~~~~~v~~~~~~~~ 340 (434)
..+. .-....|++++|-|.
T Consensus 246 L~ei----klPt~qitsccFgGk 264 (310)
T KOG4499|consen 246 LLEI----KLPTPQITSCCFGGK 264 (310)
T ss_pred EEEE----EcCCCceEEEEecCC
Confidence 5443 233668899999765
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.48 E-value=0.01 Score=35.30 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=29.5
Q ss_pred ccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 372 RGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 372 ~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
...|..+.|+|. ..+||.+..||.|.++++ ++++
T Consensus 11 ~~~v~~~~w~P~---------mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPT---------MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCC---------CCEEEEEECCCeEEEEEC-CCcC
Confidence 456899999999 899999999999999999 4443
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.44 E-value=1.2 Score=44.64 Aligned_cols=111 Identities=14% Similarity=0.100 Sum_probs=74.9
Q ss_pred EEEEecC-CCEEEEEcC----------CCeEEEEEcCcccccccccCcccCcccceEEE-EeeCCEEEEecCCCcEEEEe
Q 046226 288 TLTLTLD-DGLLYGGCT----------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCL-ASVANYVISGSADSTSRVWA 355 (434)
Q Consensus 288 ~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~dg~i~iwd 355 (434)
+..|..| +.++++|+. .|.|.+|.+.. ....+...... -.+.+.++ .|+|+++|.- +..|++|+
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~-v~Gav~aL~~fngkllA~I--n~~vrLye 854 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETV-VKGAVYALVEFNGKLLAGI--NQSVRLYE 854 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeee-eccceeehhhhCCeEEEec--CcEEEEEE
Confidence 3446665 667777753 67888888764 22333222111 12344454 3567777654 56899999
Q ss_pred ccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 356 REQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 356 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
..+. +.++.-..|..++..+...-. +..++.|..-+.|.+-.....+
T Consensus 855 ~t~~---~eLr~e~~~~~~~~aL~l~v~---------gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 855 WTTE---RELRIECNISNPIIALDLQVK---------GDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cccc---ceehhhhcccCCeEEEEEEec---------CcEEEEeeccceEEEEEEeccC
Confidence 9886 566666678888888888877 8899999999998887776555
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.43 E-value=0.58 Score=41.07 Aligned_cols=157 Identities=10% Similarity=0.079 Sum_probs=75.8
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
-.+.+..+.-+++|++++++.......-||-....-...-..-...|..|.|.+++.|......|.|+.=+.. .....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~--~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDP--DDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-T--TEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCC--CCccc
Confidence 4467888888999999988876555667875432111222224578999999999955556688989887621 01111
Q ss_pred eEE-EEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCCCc
Q 046226 273 HTL-ILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSADST 350 (434)
Q Consensus 273 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~ 350 (434)
... ........-.+..++|.+++...++|+. |.+.+ ..+. ....+.......-......+.| +++.-.+.+.+|.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~Dg-GktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ 297 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDG-GKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV 297 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESST-TSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCC-CccceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence 111 1111122334789999988777776654 44433 2221 2222222222222334566666 4556566667887
Q ss_pred EEEE
Q 046226 351 SRVW 354 (434)
Q Consensus 351 i~iw 354 (434)
|.-|
T Consensus 298 ll~~ 301 (302)
T PF14870_consen 298 LLRY 301 (302)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7655
No 393
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.38 E-value=1.2 Score=44.27 Aligned_cols=70 Identities=17% Similarity=0.125 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEEcCC----------Cee---EEEc--------ccCccCeEEEEEcCCC----e
Q 046226 195 GPITSIAINVSDDTLYSASLDKTIKVWRIRD----------SKC---IETI--------QAHSEPINALVVADDG----V 249 (434)
Q Consensus 195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~---~~~~--------~~~~~~v~~~~~~~~~----~ 249 (434)
-.|..|.++++|.+++..+..| |.|..+.. |+. .+.+ ..+...|..+.|+|.+ .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688999999999999888766 44444421 111 1111 1234467788888763 7
Q ss_pred EEEEeCCCeEEEEecc
Q 046226 250 LYSASDDATVRVWRRY 265 (434)
Q Consensus 250 l~s~~~dg~i~iwd~~ 265 (434)
|+.-..|+.+|+||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 7788888888888875
No 394
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.33 E-value=0.76 Score=41.37 Aligned_cols=189 Identities=7% Similarity=-0.059 Sum_probs=80.4
Q ss_pred cCCEEEE-EeCCC--eEEEecCCCceeEeeccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccC
Q 046226 101 GNGFIYT-GSDSN--VIRIWKQPEFTECGRLKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPK 175 (434)
Q Consensus 101 ~~~~l~t-g~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 175 (434)
+|+.|+. +..|| .+.+.|+.+++..+.-.+.........++++ .++-......|+-.|+.+.+....+.+ +
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~---p- 121 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV---P- 121 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE------
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC---C-
Confidence 5655544 44455 6777799888766544432222223444554 555455566788888877654332221 1
Q ss_pred CCCceeEEEeccccccCcCCCeEEEEEe--cCCCEEEEE----------------------ecCCcEEEEEcCCCeeEEE
Q 046226 176 TGGAVRNLIVGKDKMMKHMGPITSIAIN--VSDDTLYSA----------------------SLDKTIKVWRIRDSKCIET 231 (434)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~----------------------~~dg~i~vwd~~~~~~~~~ 231 (434)
...+-...|. .++..++-. --...|.-.|+.+|+....
T Consensus 122 ------------------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v 183 (386)
T PF14583_consen 122 ------------------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV 183 (386)
T ss_dssp ------------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred ------------------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence 1111112221 223322211 1134566677877775444
Q ss_pred cccCccCeEEEEEcCCC--eEEEEeC---CCe-EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEE----
Q 046226 232 IQAHSEPINALVVADDG--VLYSASD---DAT-VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGG---- 301 (434)
Q Consensus 232 ~~~~~~~v~~~~~~~~~--~l~s~~~---dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---- 301 (434)
+. ....+..+.++|.. +|+-|-+ +.. -|||-++... .....+... .....+..=-|.+||..|.--
T Consensus 184 ~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~ 259 (386)
T PF14583_consen 184 FE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--SNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTP 259 (386)
T ss_dssp EE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS----TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred Ee-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--CcceeeecC-CCCcccccccccCCCCEEEEEeecC
Confidence 43 45677888999877 4544432 221 3677665211 111111111 112334445678888765542
Q ss_pred -cCCCeEEEEEcCcc
Q 046226 302 -CTDGYIHYWHKGWF 315 (434)
Q Consensus 302 -~~dg~i~i~d~~~~ 315 (434)
..+..|.-+|+.+.
T Consensus 260 ~~~~~~i~~~d~~t~ 274 (386)
T PF14583_consen 260 GGQDFWIAGYDPDTG 274 (386)
T ss_dssp TT--EEEEEE-TTT-
T ss_pred CCCceEEEeeCCCCC
Confidence 22345666666543
No 395
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.30 E-value=0.96 Score=42.26 Aligned_cols=244 Identities=11% Similarity=0.054 Sum_probs=117.2
Q ss_pred EEEEEEeCC--EEEEE-EcCC----eEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCC
Q 046226 135 VVAMEVSHD--RVYAA-YGDG----KIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDD 207 (434)
Q Consensus 135 v~~l~~~~~--~l~~~-s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 207 (434)
+..+.++|+ +++.+ +..| .++++|+.+++.+...- .......+.|.++++
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-----------------------~~~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-----------------------ENPKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-----------------------EEEESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-----------------------cccccceEEEeCCCC
Confidence 335677886 44433 3433 49999998774332210 111123389999988
Q ss_pred EEEEEecCC-----------cEEEEEcCCCee--EEEcccCccC--eEEEEEcCCC-e-EEEEeCC---CeEEEEecccc
Q 046226 208 TLYSASLDK-----------TIKVWRIRDSKC--IETIQAHSEP--INALVVADDG-V-LYSASDD---ATVRVWRRYFY 267 (434)
Q Consensus 208 ~l~s~~~dg-----------~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~-~-l~s~~~d---g~i~iwd~~~~ 267 (434)
.|+....+. .|+.|.+.+... ...+...... ...+..++++ + ++..... ..+.+.|+...
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 776554333 378888876542 2334333332 5678889998 4 3333332 34667676521
Q ss_pred cCcceeEEEEEecccccCeEEEEEecCCCEEEEEc---CCCeEEEEEcCcccccccccCcccCccc--ceEEEEeeCCEE
Q 046226 268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC---TDGYIHYWHKGWFSAQLQYGGALQGHTH--AVMCLASVANYV 342 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l 342 (434)
. ..............+....+... .+.+++... ..+.|...++....... ....+..+.. .+..+...+++|
T Consensus 263 ~-~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~-~~~~l~~~~~~~~l~~~~~~~~~L 339 (414)
T PF02897_consen 263 G-SPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAE-WWTVLIPEDEDVSLEDVSLFKDYL 339 (414)
T ss_dssp T-TSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGG-EEEEEE--SSSEEEEEEEEETTEE
T ss_pred C-CCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccc-ceeEEcCCCCceeEEEEEEECCEE
Confidence 0 00111221222222222333333 334444332 24677777776544211 1112223333 567777777755
Q ss_pred EEe-cCCC--cEEEEeccCCCceeeEEEee-ccccceeEEEEeecccCCCCCCcccEEEEee---cCCeEEEEecCCCCc
Q 046226 343 ISG-SADS--TSRVWAREQDGRHTMLAVLV-GHRGPIRCAIAFLGRFGEETEDEYCTICTGS---LDGVLKMWRVTRPKS 415 (434)
Q Consensus 343 ~s~-~~dg--~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~---~Dg~v~iw~~~~~~~ 415 (434)
+.. ..++ .|+++++..+ .....+. .-.+.|..+...++. ..+.++.+ .-++|.-||+.+++.
T Consensus 340 vl~~~~~~~~~l~v~~~~~~---~~~~~~~~p~~g~v~~~~~~~~~--------~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 340 VLSYRENGSSRLRVYDLDDG---KESREIPLPEAGSVSGVSGDFDS--------DELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEETTEEEEEEEETT-T---EEEEEEESSSSSEEEEEES-TT---------SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEEECCccEEEEEECCCC---cEEeeecCCcceEEeccCCCCCC--------CEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 544 3444 6888888822 2222222 223345444433331 33333333 235788888887764
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.30 E-value=0.69 Score=40.59 Aligned_cols=286 Identities=13% Similarity=0.045 Sum_probs=121.9
Q ss_pred cceeeeEEEeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCc---eeEee-ccC-CCccEEEEEEeCCEEEEEEcCCe
Q 046226 80 SSYRCISSVLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEF---TECGR-LKA-KTSMVVAMEVSHDRVYAAYGDGK 153 (434)
Q Consensus 80 ~~~~~~~~~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~---~~~~~-~~~-~~~~v~~l~~~~~~l~~~s~dg~ 153 (434)
..|+.+.. .-...+..|.| +.+.-+..+..+.|.- -...+ +.... ... ..-...+|.|..+..++++..+.
T Consensus 6 ~~W~~v~l--~t~~~l~dV~F~d~~~G~~VG~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ 82 (302)
T PF14870_consen 6 NSWQQVSL--PTDKPLLDVAFVDPNHGWAVGAYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGL 82 (302)
T ss_dssp --EEEEE---S-SS-EEEEEESSSS-EEEEETTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTE
T ss_pred CCcEEeec--CCCCceEEEEEecCCEEEEEecCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCce
Confidence 34555552 24558999999 5444433444565422 11112 22211 111 12346778888775555565664
Q ss_pred EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEE-c
Q 046226 154 IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIET-I 232 (434)
Q Consensus 154 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~ 232 (434)
| +...+.++.-..+.+.. .-......+....++..++ ++..|.|+.=. +.|+.-.. .
T Consensus 83 l-l~T~DgG~tW~~v~l~~-------------------~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~ 140 (302)
T PF14870_consen 83 L-LHTTDGGKTWERVPLSS-------------------KLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVV 140 (302)
T ss_dssp E-EEESSTTSS-EE----T-------------------T-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE
T ss_pred E-EEecCCCCCcEEeecCC-------------------CCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcc
Confidence 3 33333333333322110 0112223333333443333 34455544322 23332222 2
Q ss_pred ccCccCeEEEEEcCCCeEEEEeCCCe-EEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE
Q 046226 233 QAHSEPINALVVADDGVLYSASDDAT-VRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH 311 (434)
Q Consensus 233 ~~~~~~v~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 311 (434)
..-.+.+..+..++++.+++.+..|. ..-||-- ....... .......|..+.|.|++.+.+.+ ..|.|+.=+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G----~~~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG----QTTWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-----SS-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCC----CccceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 33456788888899994444445554 4567632 2222222 22345789999999998776655 888888876
Q ss_pred cCcccccccc-cCcccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCC
Q 046226 312 KGWFSAQLQY-GGALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEET 389 (434)
Q Consensus 312 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 389 (434)
.......... ..........+..+++. ++.+.+++..|.+ +...+.++.++.......-...++.+.|.+.
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~------ 286 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP------ 286 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET------
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCC------
Confidence 2222222211 11121233347888886 3444445555544 3455555554444433344556778888764
Q ss_pred CCcccEEEEeecCCeEEEE
Q 046226 390 EDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 390 ~~~~~~l~s~~~Dg~v~iw 408 (434)
. .-...+.||.|.-|
T Consensus 287 ---~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 ---D-KGFVLGQDGVLLRY 301 (302)
T ss_dssp ---T-EEEEE-STTEEEEE
T ss_pred ---C-ceEEECCCcEEEEe
Confidence 2 44555678887655
No 397
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.67 Score=39.61 Aligned_cols=166 Identities=10% Similarity=0.064 Sum_probs=103.5
Q ss_pred ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecC
Q 046226 128 LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVS 205 (434)
Q Consensus 128 ~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 205 (434)
+.+-...+.++.|+|+ .|++......-.||=-..++.+..+.+. .-.....|.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~---------------------g~~DpE~Ieyig~ 139 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT---------------------GFSDPETIEYIGG 139 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc---------------------ccCChhHeEEecC
Confidence 3444556999999997 7777777776666655556666655432 2333456677777
Q ss_pred CCEEEEEecCCcEEEEEcCCCeeEEEc----------ccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeE
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKCIETI----------QAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHT 274 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~ 274 (434)
+++.++--.++.+.++.+.....+..+ ...+.....++|.+.. .|+.+-+..-+.||.+......-...
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~ 219 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH 219 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc
Confidence 777777777888888877654222211 1225678899999988 78888777778888665111110000
Q ss_pred EEE----EecccccCeEEEEEec-CCCEEEEEcCCCeEEEEEcCc
Q 046226 275 LIL----TLTAKYSPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 275 ~~~----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 314 (434)
... ...-.-..+.++.|++ .+.+|+-+.+++.+.-.|...
T Consensus 220 ~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 220 ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 000 0001123567788887 456777778888888887653
No 398
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.19 Score=45.36 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=89.9
Q ss_pred EEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc
Q 046226 240 NALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL 319 (434)
Q Consensus 240 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 319 (434)
+.+.|...+..+.+...|.+.-|-..... ....+..-....++|.++.|++|.+.+++--.+..|.+++........
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpn---dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPN---DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCC---CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 45555544444444445556666555222 111222222345699999999999999999999999999986666666
Q ss_pred cccCcccCcccceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeec
Q 046226 320 QYGGALQGHTHAVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLG 383 (434)
Q Consensus 320 ~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 383 (434)
......+.....|..+.|..+ -+|... +.-+.+|.+.... ..++..+.|.-.|.--.|.++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pek--rslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred HHHHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhh--hhhhhhhhcccCccEEEEccc
Confidence 666666666777999999754 455554 3446777665432 345556667777777777776
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.09 Score=52.74 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=85.8
Q ss_pred CCeEEEEEecCCCEEEEE--ecCCcEEEEEcCCCeeE-----EEcc------cCccCeEEEEEcCCC--eEEEEeCCCeE
Q 046226 195 GPITSIAINVSDDTLYSA--SLDKTIKVWRIRDSKCI-----ETIQ------AHSEPINALVVADDG--VLYSASDDATV 259 (434)
Q Consensus 195 ~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~--~l~s~~~dg~i 259 (434)
-++..+...+|+...++. +.+-.|..||+++...- .-+. .......++.|+|.- ..+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 456666667776655443 33347899999753211 1111 123355678888876 67778889999
Q ss_pred EEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226 260 RVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA 339 (434)
Q Consensus 260 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 339 (434)
++..+. ........ .......++++|+|.|+.++.|...|++.-|........ ............|.|+.|-+
T Consensus 181 ~V~~~~-----~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~-~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTK-----QLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS-EIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhh-----hhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceee-cccCCCcCCCcceeEEEEec
Confidence 998765 11111111 123356899999999999999999999999875322111 11111111246889999976
Q ss_pred C
Q 046226 340 N 340 (434)
Q Consensus 340 ~ 340 (434)
.
T Consensus 254 t 254 (1405)
T KOG3630|consen 254 T 254 (1405)
T ss_pred c
Confidence 5
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.15 E-value=0.018 Score=55.96 Aligned_cols=194 Identities=13% Similarity=0.051 Sum_probs=109.8
Q ss_pred CCcEEEEEcCCCee-EEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCcceeEEEEEe-cccccCeEEEE
Q 046226 215 DKTIKVWRIRDSKC-IETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSENQLHTLILTL-TAKYSPVKTLT 290 (434)
Q Consensus 215 dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~ 290 (434)
.+.+++-+..+... -..+++..+.+-.+.|.... .+. -.-|.+.|||+....++-...+.... ......+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 34566665543221 12234556677777775433 222 33477899998865554444433332 23334455666
Q ss_pred Eec---CCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccce-------------EEEEeeCCEEEEecCCCcEEEE
Q 046226 291 LTL---DDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAV-------------MCLASVANYVISGSADSTSRVW 354 (434)
Q Consensus 291 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~l~s~~~dg~i~iw 354 (434)
|.| +.-++..+-.++.|++...+.... ..+.+|...+ ..++.+|..|+....||.++.|
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 665 556777777888888877653322 1233455444 3456678899999999998888
Q ss_pred eccCC--CceeeEEEeecccc-ceeEEEEeecccCCCCCCcccEEEEee-cCCeEEEEecCCCCc
Q 046226 355 AREQD--GRHTMLAVLVGHRG-PIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLKMWRVTRPKS 415 (434)
Q Consensus 355 d~~~~--~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~~~~~ 415 (434)
.+.-. ....|+..++.|.+ +-.|..+.....-....+.-.++++++ ....+++|.-..-+.
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C 327 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC 327 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh
Confidence 76432 23357778888884 444443433221111112233455555 455699998765443
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.08 E-value=0.19 Score=41.21 Aligned_cols=100 Identities=8% Similarity=0.062 Sum_probs=65.2
Q ss_pred EEEEEeCC---EEEEEEcCCeEEEeec--CCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226 136 VAMEVSHD---RVYAAYGDGKIRVWRS--TWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY 210 (434)
Q Consensus 136 ~~l~~~~~---~l~~~s~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 210 (434)
+.++|+.+ ..++-+.+-+|.-||. .++.....-.+..+.... -.++. .--.+++..+|++.+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~------------~~e~~-~PDGm~ID~eG~L~V 227 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ------------PFESL-EPDGMTIDTEGNLYV 227 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC------------CcCCC-CCCcceEccCCcEEE
Confidence 56777765 4566677888888884 344332222221111110 00111 112334455788888
Q ss_pred EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC
Q 046226 211 SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG 248 (434)
Q Consensus 211 s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (434)
++-..++|...|..+|+.+.+++-....|+|++|-..+
T Consensus 228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn 265 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKN 265 (310)
T ss_pred EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCC
Confidence 88888999999999999999999999999999997654
No 402
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.07 E-value=1.2 Score=41.08 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=33.4
Q ss_pred CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeC
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSH 142 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 142 (434)
...+++|..+|.|++|.. +|.++..-.-|..+|..+....
T Consensus 79 w~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 79 WTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred cEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 468999999999999984 7777777777899999998854
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.5 Score=42.49 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=94.4
Q ss_pred CeEEEecCCCceeEeeccCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccc
Q 046226 112 NVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKM 190 (434)
Q Consensus 112 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (434)
-.|+|+++ +|..+.++.-..+.+..+.|+.+ .|++...+|++.+|++-.... ....+..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~i-e~~svg~------------------ 123 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFI-ESNSVGF------------------ 123 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhh-ccccccc------------------
Confidence 45888886 56666665544558999999998 899999999999999753221 1111000
Q ss_pred cCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc---CccCeEEEEEcCCC----eEEEEe-CCCeEEEE
Q 046226 191 MKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA---HSEPINALVVADDG----VLYSAS-DDATVRVW 262 (434)
Q Consensus 191 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~----~l~s~~-~dg~i~iw 262 (434)
......|..+.|..+|-.+++. +|.+.+-+-.....+.+++. ..-.-.|-...+++ .++-.. ..+ ..++
T Consensus 124 e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~ 200 (829)
T KOG2280|consen 124 ESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHIC 200 (829)
T ss_pred ccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccc
Confidence 0123345555555455333333 45554443222222333322 11122333333332 111111 111 0111
Q ss_pred ecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccccccc
Q 046226 263 RRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQ 320 (434)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 320 (434)
-. .........+......+..+.++|+.++|+--..+|.|.+-+.+......+
T Consensus 201 q~-----~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce 253 (829)
T KOG2280|consen 201 QV-----EESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCE 253 (829)
T ss_pred ce-----ecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhc
Confidence 11 111111122222245678899999999999999999999988764443333
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.92 E-value=0.0027 Score=61.30 Aligned_cols=235 Identities=16% Similarity=0.192 Sum_probs=124.1
Q ss_pred CCeEEEecCCCce-eEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCC--CCCceeeEeeeccCCCCceeEEE
Q 046226 111 SNVIRIWKQPEFT-ECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTW--DNGVKHVKLATIPKTGGAVRNLI 184 (434)
Q Consensus 111 dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~ 184 (434)
.+-+++-|..+.. ....+++..+.|-.++|-.. .+. -.-|.+.|||++. ++....+.+.....
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p--------- 178 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITP--------- 178 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCc---------
Confidence 4667777765533 22345677888888888542 222 2347789998763 22222222221111
Q ss_pred eccccccCcCCCeEEEEE---ecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEE
Q 046226 185 VGKDKMMKHMGPITSIAI---NVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRV 261 (434)
Q Consensus 185 ~~~~~~~~~~~~v~~~~~---~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~i 261 (434)
....+.-|.| -++..++..+..++.|++....+... ..+.+|...+..+++...|++...+
T Consensus 179 --------~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------- 242 (1283)
T KOG1916|consen 179 --------YGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------- 242 (1283)
T ss_pred --------CCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------
Confidence 1222233333 34566777777788888877655432 4556688888877776655221111
Q ss_pred EecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCccc-ccccccCcccCcc-cceEEEEee-
Q 046226 262 WRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFS-AQLQYGGALQGHT-HAVMCLASV- 338 (434)
Q Consensus 262 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~-~~v~~~~~~- 338 (434)
++|||..++.++.||.++.|.+--.. ....+....+.|. .+-.|.-++
T Consensus 243 -----------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~ 293 (1283)
T KOG1916|consen 243 -----------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHK 293 (1283)
T ss_pred -----------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecc
Confidence 56677777777777777776543211 1122223333444 333343343
Q ss_pred --------CC--EEEEecC-CCcEEEEeccCCCceeeE--------EEeeccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226 339 --------AN--YVISGSA-DSTSRVWAREQDGRHTML--------AVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTG 399 (434)
Q Consensus 339 --------~~--~l~s~~~-dg~i~iwd~~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 399 (434)
+. +++++++ +..+++|....- +|+ .....|.+.|+.+....-- -..+++-
T Consensus 294 ~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w---~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~--------~~~~v~r 362 (1283)
T KOG1916|consen 294 QEILVVSIGKWVLRITTTDVNREEKFWAEAPW---QCLLDKLIDGVQIVGPHDGEVTDLSMCQWM--------TTRLVSR 362 (1283)
T ss_pred ccccCCccceeEEEEecccCCcceeEeeccch---hhhhhhcccceEeecCCCccccchhhhHHH--------HHHHHHh
Confidence 11 3444443 457888876543 333 2223444444432111000 1135667
Q ss_pred ecCCeEEEEecCC
Q 046226 400 SLDGVLKMWRVTR 412 (434)
Q Consensus 400 ~~Dg~v~iw~~~~ 412 (434)
+.|+.|++|.-..
T Consensus 363 ~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 363 SVDGTIKIWQNRK 375 (1283)
T ss_pred hhHHHHHHhhcch
Confidence 7899999997543
No 405
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.90 E-value=1.4 Score=40.61 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=139.9
Q ss_pred CCEEEEEeCCCeEEEecCCCce-----eEeeccCCCccEEEEEEeC------CEEEEEEcCCeEEEeecCCCCCceeeEe
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFT-----ECGRLKAKTSMVVAMEVSH------DRVYAAYGDGKIRVWRSTWDNGVKHVKL 170 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~~~------~~l~~~s~dg~i~vwd~~~~~~~~~~~~ 170 (434)
.+.+++|+..|.++||+..... .+.+.+ -..+|..+..-. +..++.-.-..+.||.+......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~----- 110 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT----- 110 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC-----
Confidence 4689999999999999874422 122211 245677766532 23444456677777776322111
Q ss_pred eeccCCCCceeEEEeccccccCcC--CCeEEEEEec----C-CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE
Q 046226 171 ATIPKTGGAVRNLIVGKDKMMKHM--GPITSIAINV----S-DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV 243 (434)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~ 243 (434)
...+... .+.. ...|. .....+++-| . ..++.+=+.||.+.+++-+.......+.. .--.-.+.
T Consensus 111 ---~~~g~~~-~L~~----~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~ 181 (418)
T PF14727_consen 111 ---VEHGNQY-QLEL----IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLC 181 (418)
T ss_pred ---cccCcEE-EEEE----EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeE
Confidence 0000000 0000 00122 2233333333 1 35677889999999999766544444443 22223456
Q ss_pred EcCCC-eEEEEeCCCeEEEEecccccCcce---------------eEE--EEEecccccCeEEEEE---ecCCCEEEEEc
Q 046226 244 VADDG-VLYSASDDATVRVWRRYFYSENQL---------------HTL--ILTLTAKYSPVKTLTL---TLDDGLLYGGC 302 (434)
Q Consensus 244 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~---------------~~~--~~~~~~~~~~v~~~~~---~~~~~~l~~~~ 302 (434)
+.+.. .+++++.+..+..|.......... ... .-++. -...+..+.. +.....+++-+
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg 260 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG 260 (418)
T ss_pred EeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe
Confidence 66655 888888888888886531111100 000 00111 1112333332 22222333322
Q ss_pred CCCeEEEEEcCcccccccccCcccCcccceEEEEe----eCC---EEEEecCCCcEEEEeccCCCceeeEEEeeccccce
Q 046226 303 TDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS----VAN---YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPI 375 (434)
Q Consensus 303 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 375 (434)
...+.+.+.. ....+...+............ .++ .++.++.++.+.||.-. +.+...+....+|
T Consensus 261 -er~Lf~l~~~---G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~PV 331 (418)
T PF14727_consen 261 -ERSLFCLKDN---GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHVPV 331 (418)
T ss_pred -cceEEEEcCC---CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCCCE
Confidence 2344444432 222332333222211111111 222 58889999999999644 3333333333333
Q ss_pred eEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 376 RCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
++....- ..-..+|++-+.+|.+.+-=+-+....
T Consensus 332 -al~v~~~------~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 332 -ALSVANF------NGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred -EEEeccc------CCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 2222210 011568999999999999888766543
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.89 E-value=0.32 Score=47.39 Aligned_cols=112 Identities=10% Similarity=0.010 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCeEEEEEcCccccc----------------ccccCcccCcccceEEEEee----CCEEEEecCCCcEEE
Q 046226 294 DDGLLYGGCTDGYIHYWHKGWFSAQ----------------LQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRV 353 (434)
Q Consensus 294 ~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~i 353 (434)
+...|+.+..||.|.+|.+..-... ......+ .-....+++++. .+++|+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 4567888889999999975321100 0000011 112356788876 457888887788888
Q ss_pred EeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCccc-EEEEeecCCeEEEEec
Q 046226 354 WAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYC-TICTGSLDGVLKMWRV 410 (434)
Q Consensus 354 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-~l~s~~~Dg~v~iw~~ 410 (434)
|-............-..|...|.+|.|.++.... .|. .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~----~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP----NGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCC----ccceEEEEEeccCcEEEEEE
Confidence 7655421101111111366779999999884222 143 7888999999999888
No 407
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.78 E-value=2.5 Score=42.48 Aligned_cols=284 Identities=15% Similarity=0.107 Sum_probs=137.2
Q ss_pred EeeccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeE-------eeccCCCccEEEEEEeCC------EEEEEEc---
Q 046226 88 VLKKDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTEC-------GRLKAKTSMVVAMEVSHD------RVYAAYG--- 150 (434)
Q Consensus 88 ~~~h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~-------~~~~~~~~~v~~l~~~~~------~l~~~s~--- 150 (434)
..+...-..|+.+ +...|++|+.-|.=.+-.+.+.... .++. .-++|.++..-.. .+++++.
T Consensus 302 ~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~k 380 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFK 380 (1096)
T ss_pred ecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCCCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCC
Confidence 3444555566777 8889999998876666655442222 1221 2357888777542 6777766
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEE--EecC-CCEEEEEecCCcEEEEEcCCCe
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIA--INVS-DDTLYSASLDKTIKVWRIRDSK 227 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~~~l~s~~~dg~i~vwd~~~~~ 227 (434)
||++++..-. -.+.......++ .-..++.+. +.++ .++|+.+- -+.-++..+...-
T Consensus 381 dgSLRiiRng--i~I~e~A~i~l~------------------Gikg~w~lk~~v~~~~d~ylvlsf-~~eTrvl~i~~e~ 439 (1096)
T KOG1897|consen 381 DGSLRIIRNG--IGIDELASIDLP------------------GIKGMWSLKSMVDENYDNYLVLSF-ISETRVLNISEEV 439 (1096)
T ss_pred CCcEEEEecc--cccceeeEeecC------------------CccceeEeeccccccCCcEEEEEe-ccceEEEEEccce
Confidence 8999998643 222222111111 133455555 3322 22444443 3344455443221
Q ss_pred eEEEcccCccCeEEEEEcCC-C-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226 228 CIETIQAHSEPINALVVADD-G-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
......+-......++.+.- + .|+-... ..||+++-. .....+.. .+.++....+.+...++.++.++
T Consensus 440 ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--------~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~ 509 (1096)
T KOG1897|consen 440 EETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--------GLRSEWRP-PGKITIGVVSANASQVVVAGGGL 509 (1096)
T ss_pred EEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch--------hhhhcccC-CCceEEEEEeecceEEEEecCcc
Confidence 11111111222223333211 1 2222222 245665422 01111111 12333344444555677777777
Q ss_pred eEEEEEcCcccccccccCcccCcccceEEEEee-----CC---EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeE
Q 046226 306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-----AN---YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRC 377 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 377 (434)
.+...++......... -......|.|++++ ++ +++.|.++..+.+--........+...+.+ ....++
T Consensus 510 ~l~y~~i~~~~l~e~~---~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~-~~iPRS 585 (1096)
T KOG1897|consen 510 ALFYLEIEDGGLREVS---HKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSG-EIIPRS 585 (1096)
T ss_pred EEEEEEeeccceeeee---eheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCC-Cccchh
Confidence 7777776544311111 11234578888775 22 888898877666554433211111111211 111223
Q ss_pred EEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 378 AIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
+.+..- ..+..+|.++..||.+..+.+...
T Consensus 586 Il~~~~------e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 586 ILLTTF------EGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred eeeEEe------eccceEEEEEcCCceEEEEEEEcc
Confidence 322211 112679999999999988877644
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.66 E-value=0.56 Score=44.03 Aligned_cols=116 Identities=10% Similarity=0.080 Sum_probs=68.5
Q ss_pred CcCCCeEEEEEecC----CCEEEEEecCCcEEEEEcC-----CCeeEEEcccC-cc----CeEEEEEcCCC-eEEEEeCC
Q 046226 192 KHMGPITSIAINVS----DDTLYSASLDKTIKVWRIR-----DSKCIETIQAH-SE----PINALVVADDG-VLYSASDD 256 (434)
Q Consensus 192 ~~~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~-----~~~~~~~~~~~-~~----~v~~~~~~~~~-~l~s~~~d 256 (434)
+.-..|..+.|.|- ...|++......|.||.+. +.+.+..-..+ .. --..+.|+|.. .|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 45566999999984 3356666678899999985 22222211111 11 12356789888 44444443
Q ss_pred CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcC-CCeEEEEEc
Q 046226 257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCT-DGYIHYWHK 312 (434)
Q Consensus 257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~ 312 (434)
..-.+++++. ........+ ...+.|.|.+|.+||+.|+++-. .=.-+|||-
T Consensus 134 dvSV~~sV~~----d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 DVSVLPSVHC----DSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ceeEeeeeee----CCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 3334555541 111122222 34578999999999998877643 335678884
No 409
>PHA02790 Kelch-like protein; Provisional
Probab=95.57 E-value=1.3 Score=42.24 Aligned_cols=142 Identities=8% Similarity=0.032 Sum_probs=69.9
Q ss_pred CCCEEEEEecC--CcEEEEEcCCCee--EEEcccCccCeEEEEEcCCC-eEEEEeCCC---eEEEEecccccCcceeEEE
Q 046226 205 SDDTLYSASLD--KTIKVWRIRDSKC--IETIQAHSEPINALVVADDG-VLYSASDDA---TVRVWRRYFYSENQLHTLI 276 (434)
Q Consensus 205 ~~~~l~s~~~d--g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg---~i~iwd~~~~~~~~~~~~~ 276 (434)
++...+.|+.+ ..+..||..+.+- +..+...... .+++.. ++ ..+.||.++ .+..||.. ...+...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~-~~~~~~-~g~IYviGG~~~~~~~ve~ydp~----~~~W~~~ 391 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN-PAVASI-NNVIYVIGGHSETDTTTEYLLPN----HDQWQFG 391 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc-cEEEEE-CCEEEEecCcCCCCccEEEEeCC----CCEEEeC
Confidence 56666777754 3577888765432 2222211111 123333 45 666666543 46677765 2223322
Q ss_pred EEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC-----CcE
Q 046226 277 LTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD-----STS 351 (434)
Q Consensus 277 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i 351 (434)
..+....... ++ ..-++...+.| |.+.+||..+ ..+.....+............+++..+.||.+ ..+
T Consensus 392 ~~m~~~r~~~-~~-~~~~~~IYv~G---G~~e~ydp~~--~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 392 PSTYYPHYKS-CA-LVFGRRLFLVG---RNAEFYCESS--NTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CCCCCccccc-eE-EEECCEEEEEC---CceEEecCCC--CcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceE
Confidence 2222111111 12 22345555655 3577888753 33333333332223334455677788888764 346
Q ss_pred EEEeccCC
Q 046226 352 RVWAREQD 359 (434)
Q Consensus 352 ~iwd~~~~ 359 (434)
..||..++
T Consensus 465 e~Yd~~~~ 472 (480)
T PHA02790 465 EVYNNRTY 472 (480)
T ss_pred EEEECCCC
Confidence 67776654
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.56 E-value=1.1 Score=43.35 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=68.7
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcc-cCccCeEEEEEc--CCC-eEEEEeCCCeEEEEeccc---ccCc
Q 046226 198 TSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQ-AHSEPINALVVA--DDG-VLYSASDDATVRVWRRYF---YSEN 270 (434)
Q Consensus 198 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~-~l~s~~~dg~i~iwd~~~---~~~~ 270 (434)
.-+.-+.-++.-++-+....+.|||.+.+.....-. ...+.|.++.|. |++ .+++.|..+.|.++--.. ....
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 333333334444444445689999998876443322 357789999986 566 788888888898884310 0111
Q ss_pred ceeEEEEE--ecccc-cCeEEEEEecCCCEEEEEcCCCeEEEEEc
Q 046226 271 QLHTLILT--LTAKY-SPVKTLTLTLDDGLLYGGCTDGYIHYWHK 312 (434)
Q Consensus 271 ~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 312 (434)
.....+.. +..+. .+|....|.++|.+++.+ +..+.|+|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 11112211 22222 578899999998776654 457888873
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.53 E-value=0.51 Score=42.93 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=56.8
Q ss_pred CCeEEEecCCCceeEeeccCCC--ccEEEEEEeCC-----EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEE
Q 046226 111 SNVIRIWKQPEFTECGRLKAKT--SMVVAMEVSHD-----RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNL 183 (434)
Q Consensus 111 dg~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~-----~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
...+.+||+.+.+.++++.-.. .....|.|..+ .++.+.-..+|..|--..+..-..-++..++.....-..+
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 4589999999999999887543 24567777543 4555555666666654333333333333332211000000
Q ss_pred EeccccccCcCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCC
Q 046226 184 IVGKDKMMKHMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDS 226 (434)
Q Consensus 184 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~ 226 (434)
..-...+..-..-|++|.+|.|.++|+..+ .+|.|+.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 000001111245689999999999988665 5899999999753
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.48 E-value=1.4 Score=37.53 Aligned_cols=185 Identities=10% Similarity=-0.037 Sum_probs=103.4
Q ss_pred CeEEEEEecCCCEEEEEecCC--cEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcce
Q 046226 196 PITSIAINVSDDTLYSASLDK--TIKVWRIRDSKCIETIQAH-SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
-...+.|..++.++-+.+.-| .|+.+|+.+++.+....-. .-.-..++...+....-.=.++...+||...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t------ 119 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT------ 119 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT------
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc------
Confidence 345677767777777777666 7999999999877655432 2233456666555555566789999999862
Q ss_pred eEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCc-ccceEEEEee-CCEEEEecCCCc
Q 046226 273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGH-THAVMCLASV-ANYVISGSADST 350 (434)
Q Consensus 273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~~l~s~~~dg~ 350 (434)
.+.+..+.- ...-..++ .+++.|+.......|+++|..+........-...+. ...+.-+.+- |...|=.-....
T Consensus 120 l~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~ 196 (264)
T PF05096_consen 120 LKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDR 196 (264)
T ss_dssp TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSE
T ss_pred ceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCe
Confidence 122222221 13444555 467788888778899999976554433322111111 1123334443 334444445566
Q ss_pred EEEEeccCCCceeeEEEee---------------ccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226 351 SRVWAREQDGRHTMLAVLV---------------GHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400 (434)
Q Consensus 351 i~iwd~~~~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 400 (434)
|...|..++ ..+..+. ...+-.+.+|+.|.. +.+++||-
T Consensus 197 I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~--------~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET--------DRLFVTGK 250 (264)
T ss_dssp EEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT--------TEEEEEET
T ss_pred EEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC--------CEEEEEeC
Confidence 777777776 3333221 013457889999884 66777774
No 413
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2.2 Score=39.27 Aligned_cols=200 Identities=16% Similarity=0.137 Sum_probs=120.4
Q ss_pred CeEEEEEecCCCEEEE-EecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeC---CCeEEEEecccccCc
Q 046226 196 PITSIAINVSDDTLYS-ASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASD---DATVRVWRRYFYSEN 270 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~---dg~i~iwd~~~~~~~ 270 (434)
.-..+++++.+..++. ...++.|.+.|..+.+.......-. ....+++.+++ .+..+.. ++.+.+.|..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~----- 148 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA----- 148 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCC-----
Confidence 3456778888875554 4456899999988777766655333 56789999998 5554444 6778777754
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEc-CCCeEEEEEcCcccccc-cccCccc-CcccceEEEEeeCCEEEEecC
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC-TDGYIHYWHKGWFSAQL-QYGGALQ-GHTHAVMCLASVANYVISGSA 347 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~~l~s~~~ 347 (434)
.............+ ..++++|+|+.++... .++.|.++|........ ....... +.......+..+++++.....
T Consensus 149 -t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 149 -TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred -CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 22222222222234 8899999999776665 78999999965443221 1000111 111233455566774444333
Q ss_pred ---CCcEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCcccEEEEee-cCCeEEEEecCCCCc
Q 046226 348 ---DSTSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS-LDGVLKMWRVTRPKS 415 (434)
Q Consensus 348 ---dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~v~iw~~~~~~~ 415 (434)
++.+...|..++ ..... ...-......+...|+ |..+.+.. ..+.|.+-|..+...
T Consensus 227 ~~~~~~v~~id~~~~---~v~~~~~~~~~~~~~~v~~~p~---------g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 227 GSGSNNVLKIDTATG---NVTATDLPVGSGAPRGVAVDPA---------GKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred cCCCceEEEEeCCCc---eEEEeccccccCCCCceeECCC---------CCEEEEEecCCCeEEEEeCCCCce
Confidence 268888888876 23222 1111113456788888 77776663 447888888776544
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.35 E-value=1.2 Score=43.25 Aligned_cols=120 Identities=9% Similarity=0.071 Sum_probs=75.3
Q ss_pred EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee----CCEEEEecCCCcEEE
Q 046226 278 TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV----ANYVISGSADSTSRV 353 (434)
Q Consensus 278 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~i~i 353 (434)
.+...-..+.-+.-+.-++..++-.....+.|||.+... .++...+ .....|.+++|. ++.+++.|..+.|.+
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 333333455555555556666666667789999987544 4544455 445688898884 678888888899988
Q ss_pred Eecc------CCCceeeEEE--eeccc-cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecC
Q 046226 354 WARE------QDGRHTMLAV--LVGHR-GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVT 411 (434)
Q Consensus 354 wd~~------~~~~~~~~~~--~~~h~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~ 411 (434)
|.-. .+..+..+.. +..|+ .+|.+..|.++ |.+++.+ ++.+.|++-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~---------G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKD---------GTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecC---------CeEEEEe--CCEEEEECCC
Confidence 8531 2222233333 23444 57889999988 5555544 3567787643
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.22 E-value=1 Score=41.52 Aligned_cols=145 Identities=10% Similarity=0.023 Sum_probs=81.2
Q ss_pred cCCCEEE-EEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--------eEEEEeCCCeEEEEecccccCcceeE
Q 046226 204 VSDDTLY-SASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--------VLYSASDDATVRVWRRYFYSENQLHT 274 (434)
Q Consensus 204 ~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~s~~~dg~i~iwd~~~~~~~~~~~ 274 (434)
.+..+|+ .|.....++-.|++.|+.+..+..|..- -+.+.|+. .-+.|-.+..|.-.|.+...+.....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3445544 4566678889999999999999887765 46666643 23445555666666766222110100
Q ss_pred EEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe--eCCEEEEecCCCcEE
Q 046226 275 LILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS--VANYVISGSADSTSR 352 (434)
Q Consensus 275 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 352 (434)
....+. ......+.. .....++++++..|-|++||-- ...-...+++-...|..+.. +|.++++.+ ...+.
T Consensus 555 esKdY~-tKn~Fss~~-tTesGyIa~as~kGDirLyDRi----g~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yll 627 (776)
T COG5167 555 ESKDYK-TKNKFSSGM-TTESGYIAAASRKGDIRLYDRI----GKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLL 627 (776)
T ss_pred eehhcc-ccccccccc-cccCceEEEecCCCceeeehhh----cchhhhcCcccccceeeeEeecCCcEEEEee-cceEE
Confidence 000111 111222222 2245689999999999999932 11111234444556655554 577665554 34666
Q ss_pred EEecc
Q 046226 353 VWARE 357 (434)
Q Consensus 353 iwd~~ 357 (434)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 76654
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.10 E-value=4.3 Score=40.96 Aligned_cols=60 Identities=13% Similarity=0.091 Sum_probs=42.1
Q ss_pred CCEEEEEecCCcEEEEEcCCCeeEEEcccCccC--------eEEEEEcC-----------------CCeEEEEeCCCeEE
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP--------INALVVAD-----------------DGVLYSASDDATVR 260 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~-----------------~~~l~s~~~dg~i~ 260 (434)
+..++.++.++.|.-.|..+|+.+.++...... ...+.+.. +++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 667888888899999999999998887643211 11222221 22788888899988
Q ss_pred EEecc
Q 046226 261 VWRRY 265 (434)
Q Consensus 261 iwd~~ 265 (434)
-.|.+
T Consensus 274 ALDA~ 278 (764)
T TIGR03074 274 ALDAD 278 (764)
T ss_pred EEECC
Confidence 88876
No 417
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.99 E-value=2.3 Score=41.80 Aligned_cols=112 Identities=12% Similarity=0.134 Sum_probs=70.0
Q ss_pred eEEEEEe--cCCCEEEEEecCCcEEEEEcCC-------C----e---------eEEEcccCccCeEEEEEc--CCC-eEE
Q 046226 197 ITSIAIN--VSDDTLYSASLDKTIKVWRIRD-------S----K---------CIETIQAHSEPINALVVA--DDG-VLY 251 (434)
Q Consensus 197 v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~-~l~ 251 (434)
|+.|... .+...|+.+.+||.|.+|.+++ . + +...+. -...+.+++++ ... +||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 4444332 3566788999999999997632 0 0 111111 23467888888 555 777
Q ss_pred EEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCC---C---EEEEEcCCCeEEEEEc
Q 046226 252 SASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDD---G---LLYGGCTDGYIHYWHK 312 (434)
Q Consensus 252 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 312 (434)
+++....|.||-.......... ..-..+...|.+|+|.++. . .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~---~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYH---VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEecccccccc---ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7777788888865421111111 1111255678889987743 2 7888899999999987
No 418
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.17 Score=50.95 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=80.9
Q ss_pred cCCEEEEE--eCCCeEEEecCCCceeEe-----ecc------CCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCC
Q 046226 101 GNGFIYTG--SDSNVIRIWKQPEFTECG-----RLK------AKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNG 164 (434)
Q Consensus 101 ~~~~l~tg--~~dg~i~iwd~~~~~~~~-----~~~------~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~ 164 (434)
|+...++- +.+-.|..||+.+...-. -++ .......++.|+|. ..+++..|+.|++..+.....
T Consensus 111 D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~ 190 (1405)
T KOG3630|consen 111 DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ 190 (1405)
T ss_pred CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh
Confidence 54443333 334478889986633221 111 22345577888886 667778899999987653211
Q ss_pred ceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeE
Q 046226 165 VKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPIN 240 (434)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~ 240 (434)
...- ..-...+++++|+|.|+.++.|-..|++.-|... ++....+.+ ....|.
T Consensus 191 ~v~s----------------------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl 247 (1405)
T KOG3630|consen 191 NVTS----------------------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVL 247 (1405)
T ss_pred hhcc----------------------cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCccee
Confidence 1110 1355678999999999999999999999998763 443344332 246899
Q ss_pred EEEEcCCC
Q 046226 241 ALVVADDG 248 (434)
Q Consensus 241 ~~~~~~~~ 248 (434)
+|+|....
T Consensus 248 ~v~Wl~t~ 255 (1405)
T KOG3630|consen 248 SVTWLSTQ 255 (1405)
T ss_pred EEEEecce
Confidence 99998766
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=2.2 Score=36.69 Aligned_cols=167 Identities=13% Similarity=0.050 Sum_probs=106.3
Q ss_pred CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccC-ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccC
Q 046226 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAH-SEPINALVVADDG-VLYSASDDATVRVWRRYFYSE 269 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 269 (434)
+-...+.++.|+|+.+.|++......-.|+=...|+.+.++.-. -.....|.+..++ +.++--.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 45556999999999999999988887777777788888877532 2234567787777 445545677787776652211
Q ss_pred cc---eeEEEE-EecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-------cceEEEEee
Q 046226 270 NQ---LHTLIL-TLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-------HAVMCLASV 338 (434)
Q Consensus 270 ~~---~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~v~~~~~~ 338 (434)
.. ..+... .....+.....++|+|.++.|+.+-+..=+.||............ ....+. ..|.++.++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~-~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH-ASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc-cccCcccccceEeeccccceec
Confidence 10 101111 122225678899999999999999888888888765322222111 111111 234555565
Q ss_pred ---CCEEEEecCCCcEEEEeccCC
Q 046226 339 ---ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 339 ---~~~l~s~~~dg~i~iwd~~~~ 359 (434)
+..|+-+.+++.+.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 457777778888877877653
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.83 E-value=0.00064 Score=60.93 Aligned_cols=250 Identities=10% Similarity=0.070 Sum_probs=139.4
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
.+.-++.++.+..|..||- .++....+. .++....++|..+ .++.+-..+.+.+||+.+......-. .+
T Consensus 45 e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~------gg 116 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES------GG 116 (615)
T ss_pred CCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc------cC
Confidence 4444777888889999984 344443333 3455666777664 55666778999999987543221110 00
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCC
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDA 257 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 257 (434)
.|.... +.|++....++.+...|.+.+++..+.+.+.....|...+.++++.+.++.+.++.|.
T Consensus 117 --------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 117 --------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred --------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHH
Confidence 122222 6788888889999899999999998877776666699999999999999888888877
Q ss_pred eEEEEecccccCcceeEEEEEecccccCe--EEE---EEecCCCEEEEEcCCCeEEEE--EcCcccccccccCcccCccc
Q 046226 258 TVRVWRRYFYSENQLHTLILTLTAKYSPV--KTL---TLTLDDGLLYGGCTDGYIHYW--HKGWFSAQLQYGGALQGHTH 330 (434)
Q Consensus 258 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~v--~~~---~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~ 330 (434)
.+.+-... ..........+..... ..+ .|...|..+...-. |++.+. .+.....+... .++...+
T Consensus 181 ~L~v~~qe-----geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval--~fq~~~g 252 (615)
T KOG2247|consen 181 TLSVTTQE-----GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVAL--QFQEKYG 252 (615)
T ss_pred HHHHhhhc-----cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccce--EeeecCC
Confidence 66543221 0000011111111111 111 12222333322211 111111 11111111111 2333445
Q ss_pred ceEEEEeeCC-EEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 331 AVMCLASVAN-YVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 331 ~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
.+.|..|-++ ++..+..-|.|..-...+.+-...+.....|.+.+..++.+.
T Consensus 253 ni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq 305 (615)
T KOG2247|consen 253 NIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ 305 (615)
T ss_pred ceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence 6777777666 777787777777777666532222222225666666665553
No 421
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=2.4 Score=36.24 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=62.2
Q ss_pred EEEEEEeCC---EEEEEEcCCe-EEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEE
Q 046226 135 VVAMEVSHD---RVYAAYGDGK-IRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLY 210 (434)
Q Consensus 135 v~~l~~~~~---~l~~~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 210 (434)
...|+++|. -++.+-.-|+ ..++|....+....+... ....+.+|. .|+|||.+|+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~--------------~~RHfyGHG------vfs~dG~~LY 129 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ--------------EGRHFYGHG------VFSPDGRLLY 129 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc--------------cCceeeccc------ccCCCCcEEE
Confidence 345667664 3444444443 567777666554443210 011122443 6899999999
Q ss_pred EEecC-----CcEEEEEcCCC-eeEEEcccCccCeEEEEEcCCC-eEEE
Q 046226 211 SASLD-----KTIKVWRIRDS-KCIETIQAHSEPINALVVADDG-VLYS 252 (434)
Q Consensus 211 s~~~d-----g~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~s 252 (434)
..-.| |.|-|||.+.+ +.+..+..|.-.-..+.+.+|| .++.
T Consensus 130 ATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred eecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence 77544 78999999754 5667788888788899999999 4443
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.67 E-value=2.1 Score=39.60 Aligned_cols=139 Identities=10% Similarity=0.053 Sum_probs=85.5
Q ss_pred EEEeCCCeEEEecCCCceeEeeccCCCccEEEEEEeCC---------EEEEEEcCCeEEEeecCCCC-CceeeEeeeccC
Q 046226 106 YTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD---------RVYAAYGDGKIRVWRSTWDN-GVKHVKLATIPK 175 (434)
Q Consensus 106 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~---------~l~~~s~dg~i~vwd~~~~~-~~~~~~~~~~~~ 175 (434)
..|+....++--|++.|+.+.....|... -+.|.|. .-++|-.+..|.-.|.+-.. .+.......
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd--- 558 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD--- 558 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh---
Confidence 34555556777788889999988888775 4567664 34556566666555544322 111111000
Q ss_pred CCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeC
Q 046226 176 TGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASD 255 (434)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~ 255 (434)
........+..- -...++++|+..|-|++||--..+....+.+-...|..+....+|..+.+.-
T Consensus 559 ---------------Y~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 559 ---------------YKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ---------------cccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 011122222222 2467999999999999999755455556677788999999999993333333
Q ss_pred CCeEEEEecc
Q 046226 256 DATVRVWRRY 265 (434)
Q Consensus 256 dg~i~iwd~~ 265 (434)
...+.+-|++
T Consensus 623 k~yllL~d~~ 632 (776)
T COG5167 623 KNYLLLTDVP 632 (776)
T ss_pred cceEEEEecc
Confidence 4577787775
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.49 E-value=4.5 Score=38.38 Aligned_cols=153 Identities=8% Similarity=0.054 Sum_probs=86.0
Q ss_pred cccEEEEEE-cCCEEEEEe---CCCeEEEecCCCceeEeeccCCCccEEEEEEeCC------EEEEEEcCCeEEEeecCC
Q 046226 92 DGQILCIAV-GNGFIYTGS---DSNVIRIWKQPEFTECGRLKAKTSMVVAMEVSHD------RVYAAYGDGKIRVWRSTW 161 (434)
Q Consensus 92 ~~~v~~~~~-~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~------~l~~~s~dg~i~vwd~~~ 161 (434)
-.+|..++| ||+.++--. .+|.+++=| ...+..| ..|..+.|.|- .+++......|.||.+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 347889999 776554332 234443322 2233333 34889999884 678888899999998752
Q ss_pred CCCcee-eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC--eeEEEcccCccC
Q 046226 162 DNGVKH-VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS--KCIETIQAHSEP 238 (434)
Q Consensus 162 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~ 238 (434)
...... .......+-.. ...---..+.|+|....|++-.....=.++++... +....+ ...+.
T Consensus 92 s~~e~~K~l~sQtcEi~e-------------~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~ 157 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIRE-------------PFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGL 157 (671)
T ss_pred CccccccceeeeeeeccC-------------CcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCce
Confidence 211100 00000000000 00011234678898888777665554455666432 333334 35678
Q ss_pred eEEEEEcCCC--eEEEEeCCCeEEEEecc
Q 046226 239 INALVVADDG--VLYSASDDATVRVWRRY 265 (434)
Q Consensus 239 v~~~~~~~~~--~l~s~~~dg~i~iwd~~ 265 (434)
|.|.+|..|| ++++.+..=.-++||-.
T Consensus 158 IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 158 IHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 9999999999 44444555556788743
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.23 E-value=6.7 Score=39.28 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=29.4
Q ss_pred CcCCCeEEEEEecC---CCEEEEEecCCcEEEEEcCCC
Q 046226 192 KHMGPITSIAINVS---DDTLYSASLDKTIKVWRIRDS 226 (434)
Q Consensus 192 ~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~ 226 (434)
.+...|..+.|+|. +..|++-+.|+++++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34568999999996 588999999999999999653
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.21 E-value=4.8 Score=39.31 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecc
Q 046226 216 KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRY 265 (434)
Q Consensus 216 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~ 265 (434)
-.|+|++. +|+.+..+......+-.+.|+.+..|++...+|.+++|++.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 45888886 57777776655568889999988899999999999999976
No 426
>PRK13684 Ycf48-like protein; Provisional
Probab=94.10 E-value=4.3 Score=36.60 Aligned_cols=155 Identities=7% Similarity=-0.021 Sum_probs=80.5
Q ss_pred CCCeEEEEEecCCCEEEEEecCCcEEEE-EcCCCeeEEEc-ccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcc
Q 046226 194 MGPITSIAINVSDDTLYSASLDKTIKVW-RIRDSKCIETI-QAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ 271 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 271 (434)
...+.++.+.+++.+++++. .|.+..- |- .++.-... ..-...++++.+.+++.++..+..|.+++=..+ ...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d---~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD---DLE 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC---CCC
Confidence 45688899998887665555 5655432 22 22222222 233467889999988855555667876542111 112
Q ss_pred eeEEEEEe-cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEe-eCCEEEEecCCC
Q 046226 272 LHTLILTL-TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLAS-VANYVISGSADS 349 (434)
Q Consensus 272 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg 349 (434)
........ ......+..+.+.+++..+++ +.+|.|.. .... ....+.......-......+.+ +++..+..+..|
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCC-CCCCeECCcCCCCCcceEEEEEeCCCceEEECCCc
Confidence 22211110 112235778888887775554 45675553 2221 1222221110111123455554 456666677788
Q ss_pred cEEEEec
Q 046226 350 TSRVWAR 356 (434)
Q Consensus 350 ~i~iwd~ 356 (434)
.|.-|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8877753
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.90 E-value=0.3 Score=28.19 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCeEEEEEecCC---CEEEEEecCCcEEEEEcCC
Q 046226 195 GPITSIAINVSD---DTLYSASLDKTIKVWRIRD 225 (434)
Q Consensus 195 ~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~ 225 (434)
+.|.++.|+|+. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4788888789999999985
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.90 E-value=0.5 Score=39.45 Aligned_cols=64 Identities=13% Similarity=0.243 Sum_probs=46.6
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCeeEEEc-------c-------cCccCeEEEEEcCCCeEEEEeCCCeEEEEecc
Q 046226 202 INVSDDTLYSASLDKTIKVWRIRDSKCIETI-------Q-------AHSEPINALVVADDGVLYSASDDATVRVWRRY 265 (434)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~ 265 (434)
+...+.+|++.+.+|.+++||+.+++.+..- . .....|..+.+..+|..+..-.+|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 3456889999999999999999988764332 1 24567888888888833334456788888765
No 429
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.60 E-value=0.52 Score=43.29 Aligned_cols=76 Identities=11% Similarity=0.091 Sum_probs=53.2
Q ss_pred ccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccC----eEEEEEcCC--------------C--e
Q 046226 190 MMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEP----INALVVADD--------------G--V 249 (434)
Q Consensus 190 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~--------------~--~ 249 (434)
+......+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+. +....-... . +
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3345667899999999998888888899999999999988888764432 111111111 1 3
Q ss_pred EEEEeCCCeEEEEecc
Q 046226 250 LYSASDDATVRVWRRY 265 (434)
Q Consensus 250 l~s~~~dg~i~iwd~~ 265 (434)
++-+-..|.|.||+++
T Consensus 383 vIyaprRg~lEvW~~~ 398 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMR 398 (415)
T ss_pred EEEeccCCeEEEEecC
Confidence 4455667888888876
No 430
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.32 E-value=6.5 Score=36.17 Aligned_cols=40 Identities=10% Similarity=-0.069 Sum_probs=20.6
Q ss_pred EEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC
Q 046226 307 IHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD 348 (434)
Q Consensus 307 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 348 (434)
+.+||.... .+.....+........++..++.+++.|+..
T Consensus 314 ~e~yd~~~~--~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNG--KWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCC--cccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 457887643 2332222222222234566677788888754
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.17 E-value=0.014 Score=52.79 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=95.2
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCCCeEEEEecccccCc
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDDATVRVWRRYFYSEN 270 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~ 270 (434)
+-.......|-+.+.-++.++.+..+..||-. ++...... ..+....++|.-++ .++.+-..+.+.+||+...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e--- 107 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE--- 107 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh---
Confidence 33344555677877778888889999999953 44443333 34455677888777 6666778899999998721
Q ss_pred ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEee-CCEEEEecCCC
Q 046226 271 QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASV-ANYVISGSADS 349 (434)
Q Consensus 271 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg 349 (434)
...+.... ..+... -+.|++....++.+...|.+.|++......... ...|...++++++. .++.+.++.|.
T Consensus 108 ytqqLE~g-g~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv----~Gkh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 108 YTQQLESG-GTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV----MGKHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred hHHHHhcc-CcchHH--HHhhccCCccccccccccceEEEeccchhhhhh----hcccccceeEEEecccceeeecCcHH
Confidence 11111111 111111 278899889999999999999999754433322 22388888898887 45666666655
Q ss_pred cE
Q 046226 350 TS 351 (434)
Q Consensus 350 ~i 351 (434)
.+
T Consensus 181 ~L 182 (615)
T KOG2247|consen 181 TL 182 (615)
T ss_pred HH
Confidence 43
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.02 E-value=0.7 Score=38.61 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=51.0
Q ss_pred ceEEEEeeCCEEEEecCCCcEEEEeccCCCceee---EE-Eee-------ccccceeEEEEeecccCCCCCCcccEEEEe
Q 046226 331 AVMCLASVANYVISGSADSTSRVWAREQDGRHTM---LA-VLV-------GHRGPIRCAIAFLGRFGEETEDEYCTICTG 399 (434)
Q Consensus 331 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~-------~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~ 399 (434)
++..+...+++|++.+.+|.+++||+.+.+.... +. .+. .....|..+.+..+ |.-|++-
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~---------G~PiV~l 84 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN---------GVPIVTL 84 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC---------CCEEEEE
Confidence 5566888899999999999999999998631100 00 011 34566778888766 6667766
Q ss_pred ecCCeEEEEecCCC
Q 046226 400 SLDGVLKMWRVTRP 413 (434)
Q Consensus 400 ~~Dg~v~iw~~~~~ 413 (434)
+ +|..+.|+.+-+
T Consensus 85 s-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 85 S-NGDSYSYSPDLG 97 (219)
T ss_pred e-CCCEEEeccccc
Confidence 5 578888887644
No 433
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=3 Score=38.13 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=71.1
Q ss_pred CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE----EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccc
Q 046226 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI----ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFY 267 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 267 (434)
...++|.++.|++|.+.|++--.+++|.+++....+.. .+.+.....|....|....-++.....| +-+|-..
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~-- 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVL-- 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEc--
Confidence 35679999999999999999999999999998443322 2223344568889998766555555544 5556433
Q ss_pred cCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226 268 SENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 302 (434)
...........+...|.-..|.++-+.++.++
T Consensus 141 ---pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 141 ---PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred ---hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22333444556677888888888777654443
No 434
>PRK10115 protease 2; Provisional
Probab=92.81 E-value=12 Score=37.69 Aligned_cols=196 Identities=11% Similarity=0.040 Sum_probs=97.0
Q ss_pred CeEEEEEecCCCEEEEEec-----CCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC--eEEEEeCC-----CeEEEEe
Q 046226 196 PITSIAINVSDDTLYSASL-----DKTIKVWRIRDSKCIETIQAHSEPINALVVADDG--VLYSASDD-----ATVRVWR 263 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~s~~~d-----g~i~iwd 263 (434)
.+..+.++|++++|+.+.. ...|++.|+.+++.+...-.... ..++|.+|+ ++++...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4667889999998886533 23689999988864322221221 458999887 44443322 2566666
Q ss_pred cccccCcceeEEEEEecccccCeE-EEEEecCCCEEEEEcC---CCeEEEEEcCcccccccccCcccCcccceEEEEeeC
Q 046226 264 RYFYSENQLHTLILTLTAKYSPVK-TLTLTLDDGLLYGGCT---DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVA 339 (434)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 339 (434)
+. +.......+.. ....... .+..+.++++++..+. ++.+.+++........... +.........+.-.+
T Consensus 206 lg--t~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 279 (686)
T PRK10115 206 IG--TPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF--LPRRKDHEYSLDHYQ 279 (686)
T ss_pred CC--CChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE--EECCCCCEEEEEeCC
Confidence 55 22112222322 2222222 3333447777665443 4578888854322111110 111111112222223
Q ss_pred CEEEEecC----CCcEEEEeccCCCceeeEEEeecc-c-cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 340 NYVISGSA----DSTSRVWAREQDGRHTMLAVLVGH-R-GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 340 ~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
+.|..-+. ...|...++.....+ ..+..+ . ..|..+.+.. ..++++...+|.-+++-++.
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~---~~l~~~~~~~~i~~~~~~~----------~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQW---EELIPPRENIMLEGFTLFT----------DWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccC---eEEECCCCCCEEEEEEEEC----------CEEEEEEEeCCEEEEEEEcC
Confidence 33322222 223444444422121 233344 3 3577777763 45777777888877766653
No 435
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.77 E-value=5.8 Score=34.10 Aligned_cols=110 Identities=16% Similarity=0.058 Sum_probs=64.1
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEE-cCCCeeE-EEccc--CccCeEEEEEcCCC-eEEEEe---CCCeEEEEecccc
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWR-IRDSKCI-ETIQA--HSEPINALVVADDG-VLYSAS---DDATVRVWRRYFY 267 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~-~~~~~--~~~~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~ 267 (434)
.+..-.|.+++...+....+...+++. ...++.. ..... ....|..+.++||| +++... .++.|.+=-+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 566678888877666666566666663 2333221 11211 11289999999999 444433 4577777655422
Q ss_pred cCc---ceeEEEEEecccccCeEEEEEecCCCEEEEEcCCC
Q 046226 268 SEN---QLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDG 305 (434)
Q Consensus 268 ~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 305 (434)
... ...............+..+.|.+++.+++.+...+
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 222 11112222223356889999999998877776544
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.77 E-value=7.2 Score=35.14 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=38.7
Q ss_pred CCEEEEecCCCcEEEEeccCCCceeeEEE-eeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEE
Q 046226 339 ANYVISGSADSTSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLK 406 (434)
Q Consensus 339 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~ 406 (434)
+.+|++.-..+.|....++.+........ +.....++..+++.|+ |.+.++-+.+|.|+
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD---------G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD---------GALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT---------SEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC---------CeEEEEECCCCeEe
Confidence 44666666677888888875533222333 2344458999999999 88888888888774
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=3.1 Score=43.24 Aligned_cols=156 Identities=13% Similarity=0.218 Sum_probs=91.8
Q ss_pred EEEEEEeCC-EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEE--------ecC
Q 046226 135 VVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAI--------NVS 205 (434)
Q Consensus 135 v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~ 205 (434)
-..+-+-|. .-+-.+.|+.+.+|+.+++.....+. +-...|..|.. .|.
T Consensus 81 ~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d----------------------~~shtIl~V~LvkPkpgvFv~~ 138 (1311)
T KOG1900|consen 81 KTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYD----------------------GLSHTILKVGLVKPKPGVFVPE 138 (1311)
T ss_pred eeeeccchhhcceEEEeCCeEEEEEcCCCCcccccc----------------------chhhhheeeeeecCCCCcchhh
Confidence 344455555 34445679999999998866555442 22333433332 222
Q ss_pred CCEEEEEecCCcEEEEEcCCCee---E------EEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcc-----
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKC---I------ETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQ----- 271 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~---~------~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----- 271 (434)
=++++....--.|.++-+.-.+. . ..+....-.|.|+....+|.++.+|.|| .+|.+.......
T Consensus 139 IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~r 216 (1311)
T KOG1900|consen 139 IQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSR 216 (1311)
T ss_pred hheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcc
Confidence 23333333344566654421110 1 1222335578899988888888888888 556543111100
Q ss_pred e-------------eEEEEEec-ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 272 L-------------HTLILTLT-AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 272 ~-------------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
. ......+. .+..+|..+.++...+.+++-++.|+|.+||+..
T Consensus 217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 00011223 5567999999999999999999999999999875
No 438
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=6 Score=33.92 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=65.8
Q ss_pred CeEEEEEecCCC-EEEEEecCCc-EEEEEcCCCeeEEEcccCcc--CeEEEEEcCCC-eEEEEeC-----CCeEEEEecc
Q 046226 196 PITSIAINVSDD-TLYSASLDKT-IKVWRIRDSKCIETIQAHSE--PINALVVADDG-VLYSASD-----DATVRVWRRY 265 (434)
Q Consensus 196 ~v~~~~~~~~~~-~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~l~s~~~-----dg~i~iwd~~ 265 (434)
....|+|+|... -++.+-.-|+ ..++|....+...++...++ ..-.=.|++|| +|++.-. .|.|-+||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 344567777543 3444544453 56888887766555543222 11223589999 5554433 3789999987
Q ss_pred cccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc
Q 046226 266 FYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC 302 (434)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 302 (434)
.....+-.+..|.-....+.+.+||+.++.+.
T Consensus 149 -----~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 149 -----EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred -----cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 34445566777777888999999999988764
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.58 E-value=0.46 Score=27.45 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.0
Q ss_pred cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
+.|+++.|+|.... ..+|+-+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~------~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG------NDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCc------ccEEEEEccCCeEEEEEcccC
Confidence 46889999987411 168888888899999999853
No 440
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.44 E-value=14 Score=37.78 Aligned_cols=176 Identities=12% Similarity=0.151 Sum_probs=97.6
Q ss_pred cEEEEEcCCCeeEEEcccCcc----CeEEEEEcCCC---eEEEEe-----------CCCeEEEEecccccCcceeEEEEE
Q 046226 217 TIKVWRIRDSKCIETIQAHSE----PINALVVADDG---VLYSAS-----------DDATVRVWRRYFYSENQLHTLILT 278 (434)
Q Consensus 217 ~i~vwd~~~~~~~~~~~~~~~----~v~~~~~~~~~---~l~s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~ 278 (434)
.|++.|..+++.+..+....+ .+..+.|+... +++++. .+|.++.|++-. ........ .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~--~g~~lell-h 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVR--NGDKLELL-H 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEe--cCceeeee-e
Confidence 477788777765554442221 34455555333 222222 244566666541 11111121 1
Q ss_pred ecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226 279 LTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 279 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 358 (434)
...-.+++ .++.|...++++| ....+++||+...+...+. .++.-...|..+.+.+..+++|...-.+.++..+.
T Consensus 931 ~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~--e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 931 KTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKC--ELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred ccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhh--hhccCceEEEEEeecceEEEEeeccceEEEEEEec
Confidence 12222333 4556766666655 4678999999755443332 23334567888899999999998777776665554
Q ss_pred CCceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 359 DGRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 359 ~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
.. ..+..+.. -...|+++.+.. ...+|.+..=|.+.+-.+..
T Consensus 1006 ~~--n~l~~fadD~~pR~Vt~~~~lD----------~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1006 ED--NQLIVFADDPVPRHVTALELLD----------YDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CC--CeEEEEeCCCccceeeEEEEec----------CCceeeccccCcEEEEECCC
Confidence 32 23333333 233566665554 34688888878887777653
No 441
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=5.4 Score=41.58 Aligned_cols=141 Identities=11% Similarity=0.264 Sum_probs=85.3
Q ss_pred eCCCeEEEecCCCceeEeeccCCCccEEEEEEe---CC-------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 109 SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEVS---HD-------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 109 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~---~~-------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
+.|+.+.+|+.+++.....+.+-...|..+..- |+ +++..+.--.|.++-+...+........
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f------- 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF------- 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc-------
Confidence 357899999999988788787777777776542 22 4444444555666654322211111000
Q ss_pred ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEc----CCC---e-e----------------EEEcc-
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRI----RDS---K-C----------------IETIQ- 233 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~----~~~---~-~----------------~~~~~- 233 (434)
...+. ..-..-.|.|+....+|+.|++|- ||. +|.+ ..+ + + +-.+.
T Consensus 169 -~~~~~-----i~~dg~~V~~I~~t~nGRIF~~G~-dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 169 -NTSFK-----ISVDGVSVNCITYTENGRIFFAGR-DGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred -cccee-----eecCCceEEEEEeccCCcEEEeec-CCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 00000 001355788998777777777665 564 4443 211 1 1 11222
Q ss_pred cCccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226 234 AHSEPINALVVADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 234 ~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
.+.++|..+.+.... .+.+-+..|.|.+||+.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEcc
Confidence 467799999998666 88899999999999987
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.38 E-value=6.4 Score=33.60 Aligned_cols=194 Identities=11% Similarity=-0.003 Sum_probs=111.8
Q ss_pred CCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcce
Q 046226 194 MGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQL 272 (434)
Q Consensus 194 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~ 272 (434)
...-..++-.+||..-+++...+.|--.|..+|+....--+....-..|..-||+ .-++-+.. .|.-.|.+ ....
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpk---t~ev 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPK---TLEV 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCc---ccce
Confidence 3445677888999999999888999999999998765544555566788888998 44433322 45555543 1122
Q ss_pred eEEEEEecccccCeEEEEEecCCCEEEEEcC---------CCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226 273 HTLILTLTAKYSPVKTLTLTLDDGLLYGGCT---------DGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI 343 (434)
Q Consensus 273 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 343 (434)
.+................|++.|++-+++.. .+.|++|+.. ++....=.|...+|..-+
T Consensus 137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy 204 (353)
T COG4257 137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY 204 (353)
T ss_pred EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence 2233333444567788899999998888753 2345555432 122222345556666555
Q ss_pred EecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 344 SGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 344 s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
+.-.+..|-..|...+.. +.+-.-.+.....+.+-.+|. +..-+|....+.+..+|-...
T Consensus 205 aslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpi---------g~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPI---------GRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred EeccccceEEcccccCCc-ceecCCCcccccccccccCcc---------CcEEEeccCCceeeEeCcccc
Confidence 555556666666555421 122111121112223333333 666666666677766665543
No 443
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.38 E-value=8.3 Score=34.97 Aligned_cols=41 Identities=7% Similarity=-0.048 Sum_probs=19.7
Q ss_pred eEEEEEcCcccccccccCcccCcccceEEEEeeCCEEEEecCC
Q 046226 306 YIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVISGSAD 348 (434)
Q Consensus 306 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 348 (434)
.+.+||.... .......+........++..++.+++.|+.+
T Consensus 291 ~~e~yd~~~~--~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNG--KWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCC--cccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 4678887632 3333223322111222334566677777754
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.02 E-value=6 Score=32.51 Aligned_cols=146 Identities=17% Similarity=0.216 Sum_probs=81.4
Q ss_pred CEEEEEecCCcEEEEEcC--CCeeEEEcccCccCeEEEEEcCCC-eEEEEeCC---C---eEEEE-ecccccCcc--ee-
Q 046226 207 DTLYSASLDKTIKVWRIR--DSKCIETIQAHSEPINALVVADDG-VLYSASDD---A---TVRVW-RRYFYSENQ--LH- 273 (434)
Q Consensus 207 ~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d---g---~i~iw-d~~~~~~~~--~~- 273 (434)
+.|+.+...+.|.+|++. ..+.+.+|.. -+.|..+.++..| ++++--.+ . .+|+| +.+...... ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555667889999998 3345666653 4788999999888 88876432 2 56665 222110000 00
Q ss_pred ------------------EEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccc------cccCcccC-c
Q 046226 274 ------------------TLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL------QYGGALQG-H 328 (434)
Q Consensus 274 ------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~-~ 328 (434)
-.+..++ -..++.+++..|-..-|++|+ ++.+.+|.+....... .+...+-. |
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 0111111 134567788888544455555 5678899875433211 11111111 2
Q ss_pred c-cceEEEEeeCCEEEEecCCCcEEEEec
Q 046226 329 T-HAVMCLASVANYVISGSADSTSRVWAR 356 (434)
Q Consensus 329 ~-~~v~~~~~~~~~l~s~~~dg~i~iwd~ 356 (434)
. .....+++.++|+|..+. -.++++.+
T Consensus 186 ~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAICEGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred cCceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence 1 234667788889888774 46666654
No 445
>PRK13684 Ycf48-like protein; Provisional
Probab=91.96 E-value=9.2 Score=34.51 Aligned_cols=157 Identities=11% Similarity=-0.037 Sum_probs=83.1
Q ss_pred ccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcc
Q 046226 236 SEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWF 315 (434)
Q Consensus 236 ~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 315 (434)
...+.++.+.+++.++..+..|.+..- .+ ......... .......+..+.+.++++.++++ ..|.+++=..+ .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~--~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d-~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WE--PGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD-D 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cC--CCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC-C
Confidence 457889999998866666666765432 11 111223222 22344678899999998877765 45766432111 1
Q ss_pred cccccccCcc-cCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcc
Q 046226 316 SAQLQYGGAL-QGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEY 393 (434)
Q Consensus 316 ~~~~~~~~~~-~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 393 (434)
....+..... ......+.++.+. .+.++.++.+|.+. .....+..++.+.....-....+.+.+..+ +
T Consensus 245 G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~---------~ 314 (334)
T PRK13684 245 LESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDP---------E 314 (334)
T ss_pred CCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCC---------C
Confidence 1122211110 1112345666665 33455566677665 344555444443221222235667777654 4
Q ss_pred cEEEEeecCCeEEEEec
Q 046226 394 CTICTGSLDGVLKMWRV 410 (434)
Q Consensus 394 ~~l~s~~~Dg~v~iw~~ 410 (434)
.. +..+..|.|.-|+-
T Consensus 315 ~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 315 KG-FVLGQRGVLLRYVG 330 (334)
T ss_pred ce-EEECCCceEEEecC
Confidence 44 55667888887763
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.66 E-value=9.7 Score=34.17 Aligned_cols=61 Identities=2% Similarity=-0.022 Sum_probs=29.6
Q ss_pred CCCEEEEEec-----CCcEEEEEcCCCe--eEEEcccCccCeEEEEEcCCCeEEEEeCCCe----EEEEecc
Q 046226 205 SDDTLYSASL-----DKTIKVWRIRDSK--CIETIQAHSEPINALVVADDGVLYSASDDAT----VRVWRRY 265 (434)
Q Consensus 205 ~~~~l~s~~~-----dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~----i~iwd~~ 265 (434)
+++..+.|+. ...+..||+.+.+ .+..+......-.+++...+.+++.|+.++. +.+||+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 4566666654 2368888887653 2222221111111222232336666766532 4567765
No 447
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=6.5 Score=32.03 Aligned_cols=179 Identities=10% Similarity=-0.049 Sum_probs=81.5
Q ss_pred CCCEEEEEec--CCcEEEEEcCCCeeEEEcccCccCeE--EEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEec
Q 046226 205 SDDTLYSASL--DKTIKVWRIRDSKCIETIQAHSEPIN--ALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLT 280 (434)
Q Consensus 205 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 280 (434)
++.++.+.+. ...|++||+.+++.+..-.-....+. .+.-..+....-.-.+|.-..+|.+... ....+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~------~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE------ELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh------hhcccc
Confidence 4555555543 34799999999987765443211111 1222223233344467777778766211 111111
Q ss_pred ccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcc-cceEEEEe-eCCEEEEecCCCcEEEEeccC
Q 046226 281 AKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHT-HAVMCLAS-VANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 281 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~ 358 (434)
..+.-..++ .|+..|+.+....+++.-|..+........-+..+.. ..+.-+.| +|...+-.-.+..|...+.++
T Consensus 129 -y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 129 -YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred -cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC
Confidence 112223333 3555576666666666666543332222211111110 01122222 233333333333333344444
Q ss_pred CCce---------eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEee
Q 046226 359 DGRH---------TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGS 400 (434)
Q Consensus 359 ~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~ 400 (434)
++.. ..+..-..|..-.+.+++.|.. +++++||-
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~--------~r~~iTGK 248 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ--------DRFLITGK 248 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcC--------CeEEEecC
Confidence 3111 1122223455567788998884 57777773
No 448
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.55 E-value=2.4 Score=39.71 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=25.2
Q ss_pred cCeEEEEEecCCCEEEEEcCCCeEEEEEcCc
Q 046226 284 SPVKTLTLTLDDGLLYGGCTDGYIHYWHKGW 314 (434)
Q Consensus 284 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 314 (434)
..|..++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899999889999999999999999975
No 449
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.10 E-value=9 Score=32.77 Aligned_cols=195 Identities=10% Similarity=0.026 Sum_probs=108.4
Q ss_pred ccceeeeEEEeeccc--cEEEEEE-c-CCEEEEEeCCC--eEEEecCCCceeEeeccCC-CccEEEEEEeCCEEEEEEc-
Q 046226 79 SSSYRCISSVLKKDG--QILCIAV-G-NGFIYTGSDSN--VIRIWKQPEFTECGRLKAK-TSMVVAMEVSHDRVYAAYG- 150 (434)
Q Consensus 79 ~~~~~~~~~~~~h~~--~v~~~~~-~-~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~l~~~s~- 150 (434)
+..++.+.++- |+. -.-.+.| + |.++-+.+.-| .|+.+|+.+++......-. .-.-..++...+.++--+.
T Consensus 30 ~~~~~vv~~yp-Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk 108 (264)
T PF05096_consen 30 VYSYEVVETYP-HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEEEE---TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS
T ss_pred eeeeEEEEECC-CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec
Confidence 34566666643 433 3556777 4 55556666555 8999999999877654432 2334567777887766665
Q ss_pred CCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEE
Q 046226 151 DGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIE 230 (434)
Q Consensus 151 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 230 (434)
++...+||..+-+.+..+. ..+.=..++ .+++.|+.......|..+|..+.+...
T Consensus 109 ~~~~f~yd~~tl~~~~~~~-----------------------y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFP-----------------------YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR 163 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE------------------------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE
T ss_pred CCeEEEEccccceEEEEEe-----------------------cCCcceEEE--cCCCEEEEECCccceEEECCcccceEE
Confidence 8999999988766555553 223334555 467777777777889999998887766
Q ss_pred EcccC-----ccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEE-Ee----------cccccCeEEEEEec
Q 046226 231 TIQAH-----SEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLIL-TL----------TAKYSPVKTLTLTL 293 (434)
Q Consensus 231 ~~~~~-----~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~----------~~~~~~v~~~~~~~ 293 (434)
.+... -..++.+.+. +| ..+=.=....|...|... +.-....-. .+ .....-.+.|+++|
T Consensus 164 ~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t--G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~ 240 (264)
T PF05096_consen 164 TIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET--GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP 240 (264)
T ss_dssp EEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT---BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred EEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC--CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence 66532 2245667766 45 444344444555555541 111110000 00 01134578999998
Q ss_pred CCCEEEEEc
Q 046226 294 DDGLLYGGC 302 (434)
Q Consensus 294 ~~~~l~~~~ 302 (434)
..+.|++.+
T Consensus 241 ~~~~l~vTG 249 (264)
T PF05096_consen 241 ETDRLFVTG 249 (264)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEe
Confidence 766555444
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.98 E-value=11 Score=35.29 Aligned_cols=26 Identities=0% Similarity=0.036 Sum_probs=20.7
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEE
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVW 221 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vw 221 (434)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 57778889999999988888865554
No 451
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=4.9 Score=41.91 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=27.4
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCC
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRD 225 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 225 (434)
-......++|+|...+++.+..+|.|+++-...
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccc
Confidence 344667788999999999999999999997643
No 452
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.49 E-value=11 Score=32.52 Aligned_cols=151 Identities=11% Similarity=-0.040 Sum_probs=79.7
Q ss_pred CeEEEEEcCCC-eEEEEe---CCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEE-c
Q 046226 238 PINALVVADDG-VLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWH-K 312 (434)
Q Consensus 238 ~v~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~ 312 (434)
.+.+.++++++ .++... ....+.++... ....... ....+..-.|++++...+....+...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-----~~~~~~~----~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-----GPVRPVL----TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-----Ccceeec----cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence 68899999999 554444 33445555432 1111111 223667778999977777766666666663 1
Q ss_pred CcccccccccCcccCcccceEEEEee--CCEEEEe---cCCCcEEEEeccCCCce------eeEEEeeccccceeEEEEe
Q 046226 313 GWFSAQLQYGGALQGHTHAVMCLASV--ANYVISG---SADSTSRVWAREQDGRH------TMLAVLVGHRGPIRCAIAF 381 (434)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~---~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~~ 381 (434)
.......... ....-...|..+.++ |..++.. ..++.|.+=-+...... ..+.........++.++|.
T Consensus 96 ~~g~~~~~~v-~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 96 ASGTGEPVEV-DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred CCCcceeEEe-cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 1111111111 111111178777765 5544433 34677877765432211 1122222335678999999
Q ss_pred ecccCCCCCCcccEEEEeec-CCeEEE
Q 046226 382 LGRFGEETEDEYCTICTGSL-DGVLKM 407 (434)
Q Consensus 382 ~~~~~~~~~~~~~~l~s~~~-Dg~v~i 407 (434)
++ +.+++.+.. ++.+..
T Consensus 175 ~~---------~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 175 DD---------STLVVLGRSAGGPVVR 192 (253)
T ss_pred CC---------CEEEEEeCCCCCceeE
Confidence 88 566555544 443444
No 453
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.49 E-value=14 Score=33.90 Aligned_cols=147 Identities=12% Similarity=0.089 Sum_probs=72.3
Q ss_pred cEEEEEE--cCCEEEEEe-----------CCC-eEEEecCCC--ce--eEeeccCCCccEEEEEEeCCEEEEEEcCCeEE
Q 046226 94 QILCIAV--GNGFIYTGS-----------DSN-VIRIWKQPE--FT--ECGRLKAKTSMVVAMEVSHDRVYAAYGDGKIR 155 (434)
Q Consensus 94 ~v~~~~~--~~~~l~tg~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~l~~~~~~l~~~s~dg~i~ 155 (434)
....|+| +|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++.++.|+++......+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~ 94 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILF 94 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEE
Confidence 3567778 556555532 223 676665432 22 22333333345678888887766666554334
Q ss_pred EeecCCCCCce-eeEeeeccCCCCceeEEEeccccc-cCcCCCeEEEEEecCCCEEEEEecC------------------
Q 046226 156 VWRSTWDNGVK-HVKLATIPKTGGAVRNLIVGKDKM-MKHMGPITSIAINVSDDTLYSASLD------------------ 215 (434)
Q Consensus 156 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d------------------ 215 (434)
+.|........ ..+ .+......- ..+......++|.|||.+.++-+..
T Consensus 95 ~~d~~gdg~ad~~~~------------~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 95 LRDKDGDDKADGERE------------VLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred EeCCCCCCCCCCccE------------EEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccccc
Confidence 44544321111 000 000000000 0134557889999998876654421
Q ss_pred -CcEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEE
Q 046226 216 -KTIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSA 253 (434)
Q Consensus 216 -g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 253 (434)
|.|.-+|..+++. ..+.........++|++++.+++.
T Consensus 163 ~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 163 GGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred CceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence 3455555554443 222222233457888888844443
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.39 E-value=0.92 Score=44.18 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=46.2
Q ss_pred eCCEEEEEEcCCeEEEeecCCCC---C-ceeeEeeeccCCCCceeEEEec-cccccCcCCCeEEEEEec----CCCEEEE
Q 046226 141 SHDRVYAAYGDGKIRVWRSTWDN---G-VKHVKLATIPKTGGAVRNLIVG-KDKMMKHMGPITSIAINV----SDDTLYS 211 (434)
Q Consensus 141 ~~~~l~~~s~dg~i~vwd~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~----~~~~l~s 211 (434)
+++.++.+..||.+...+..... . .......... -...+..+... ..........+..++++. +..++++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSS-WLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHH-HHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCc-hhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 56689999999999888766411 1 1111100000 00000000000 000001233455566655 7789999
Q ss_pred EecCCcEEEEEcCCCeeEEEc
Q 046226 212 ASLDKTIKVWRIRDSKCIETI 232 (434)
Q Consensus 212 ~~~dg~i~vwd~~~~~~~~~~ 232 (434)
.+.|+.+++||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996654
No 455
>PLN02193 nitrile-specifier protein
Probab=90.34 E-value=17 Score=34.67 Aligned_cols=147 Identities=9% Similarity=-0.001 Sum_probs=68.4
Q ss_pred CCCEEEEEecC-----CcEEEEEcCCCeeEE--Eccc-C-ccCeEEEEEcCCCeEEEEeCCC-----eEEEEecccccCc
Q 046226 205 SDDTLYSASLD-----KTIKVWRIRDSKCIE--TIQA-H-SEPINALVVADDGVLYSASDDA-----TVRVWRRYFYSEN 270 (434)
Q Consensus 205 ~~~~l~s~~~d-----g~i~vwd~~~~~~~~--~~~~-~-~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~ 270 (434)
++.+++.|+.+ ..+.++|+.+.+-.. .+.. . ...-.+++...+.+++.|+.++ .+..||+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t---- 303 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVD---- 303 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCC----
Confidence 45556666654 358888987654222 1110 0 1111233333333666666543 356666541
Q ss_pred ceeEEEEEe---cccccCeEEEEEecCCCEEEEEcCC----CeEEEEEcCcccccccccCcc---cCcccceEEEEeeCC
Q 046226 271 QLHTLILTL---TAKYSPVKTLTLTLDDGLLYGGCTD----GYIHYWHKGWFSAQLQYGGAL---QGHTHAVMCLASVAN 340 (434)
Q Consensus 271 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~ 340 (434)
......... ...... ..++. -++++++.++.+ ..+.+||+.+.. +...... ........+..+.++
T Consensus 304 ~~W~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~ 379 (470)
T PLN02193 304 KKWFHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKH 379 (470)
T ss_pred CEEEeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCE
Confidence 122211110 000111 12222 256677776655 458889876432 2221111 111112233445667
Q ss_pred EEEEecCC--------------CcEEEEeccCC
Q 046226 341 YVISGSAD--------------STSRVWAREQD 359 (434)
Q Consensus 341 ~l~s~~~d--------------g~i~iwd~~~~ 359 (434)
+++.|+.+ ..+.+||+.+.
T Consensus 380 iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 380 IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred EEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 77788753 24788888765
No 456
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.67 E-value=18 Score=33.94 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=23.5
Q ss_pred cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
..|.+++..+. .+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~---------r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPS---------RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETT---------TTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCC---------cCEEEEEeCCCcEEEEEEeC
Confidence 34788888777 57899999999999999985
No 457
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.55 E-value=30 Score=36.27 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=61.6
Q ss_pred CcCCCeEEEEEecCCCEEEEEecCCcEEEEEcC-CCeeEEE-cccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccC
Q 046226 192 KHMGPITSIAINVSDDTLYSASLDKTIKVWRIR-DSKCIET-IQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSE 269 (434)
Q Consensus 192 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 269 (434)
...++|..++=. ..+|+++. ...|.+|+++ ....+.. |..-.-.+.++..- .++|+.|.--..|.+.-.. .
T Consensus 1095 E~KGtVsavceV--~G~l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~v-knlIl~gDV~ksisfl~fq---e 1167 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEV--RGHLLSSQ-GQKIIVRKLDRDSELIGVAFIDLPLYVHSMKVV-KNLILAGDVMKSISFLGFQ---E 1167 (1366)
T ss_pred hcccceEEEEEe--ccEEEEcc-CcEEEEEEeccCCcceeeEEeccceeEEehhhh-hhheehhhhhhceEEEEEc---c
Confidence 456677776532 34566655 4579999994 3332211 11111122222211 2256666666666665443 2
Q ss_pred cceeEEEEEecccccCeEEEEEecCCC--EEEEEcCCCeEEEEEcC
Q 046226 270 NQLHTLILTLTAKYSPVKTLTLTLDDG--LLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 270 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~ 313 (434)
+...-.........-.+.++.|--+|. .++++..+++|++|-..
T Consensus 1168 ep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1168 EPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred CceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 222222222233334677888877665 57888999999998653
No 458
>PLN02153 epithiospecifier protein
Probab=89.45 E-value=16 Score=33.07 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=14.4
Q ss_pred CCCEEEEEecC-------CcEEEEEcCCCe
Q 046226 205 SDDTLYSASLD-------KTIKVWRIRDSK 227 (434)
Q Consensus 205 ~~~~l~s~~~d-------g~i~vwd~~~~~ 227 (434)
++.+++.|+.+ ..+.+||+.+.+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 61 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHT 61 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCE
Confidence 45566666653 357888887654
No 459
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.16 E-value=15 Score=32.31 Aligned_cols=185 Identities=11% Similarity=0.146 Sum_probs=96.9
Q ss_pred eEEEecCCCceeEeeccC------CCccEEEEEEeC-------CEEEEEE-cCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 113 VIRIWKQPEFTECGRLKA------KTSMVVAMEVSH-------DRVYAAY-GDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 113 ~i~iwd~~~~~~~~~~~~------~~~~v~~l~~~~-------~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
.|.+||+.+.+.++++.- ..+....+.+.. ...+.+. ..+.|.|+|+.+++..+...-...+ ..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~--~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP--DP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT--S-
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce--ec
Confidence 788999999988877643 245678888876 1333333 3568999999887654443221111 11
Q ss_pred ceeEEEeccccccCcCCCeEEEEEec---CCCEEEEEecCCcEEEEEcCC-----C---------eeEEEcccCccCeEE
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINV---SDDTLYSASLDKTIKVWRIRD-----S---------KCIETIQAHSEPINA 241 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~-----~---------~~~~~~~~~~~~v~~ 241 (434)
....+......+ .....+..++.+| +++.|+-....+ -++|.+.+ . +.+..+.........
T Consensus 113 ~~~~~~i~g~~~-~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g 190 (287)
T PF03022_consen 113 DAGPFTIGGESF-QWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDG 190 (287)
T ss_dssp SSEEEEETTEEE-EETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECE
T ss_pred cccceeccCceE-ecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCce
Confidence 111121111111 2334488888876 667777665443 33343322 1 112222111235567
Q ss_pred EEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEec--CCCEEEEE
Q 046226 242 LVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTL--DDGLLYGG 301 (434)
Q Consensus 242 ~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~ 301 (434)
+++.++| ++++--..+.|..|+....-.......+..-...-..+..+.+.+ +|.+.+..
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8888888 677777888999999872222222333333222245677888877 55544433
No 460
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.15 E-value=17 Score=32.96 Aligned_cols=23 Identities=0% Similarity=0.069 Sum_probs=14.3
Q ss_pred CCCEEEEEecC-----------CcEEEEEcCCCe
Q 046226 205 SDDTLYSASLD-----------KTIKVWRIRDSK 227 (434)
Q Consensus 205 ~~~~l~s~~~d-----------g~i~vwd~~~~~ 227 (434)
+++..+.|+.+ ..+..||..+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 56666666643 247778877654
No 461
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=89.06 E-value=1.5 Score=22.41 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=16.7
Q ss_pred cEEEEEEcCCEEEEEeCCCeEEEe
Q 046226 94 QILCIAVGNGFIYTGSDSNVIRIW 117 (434)
Q Consensus 94 ~v~~~~~~~~~l~tg~~dg~i~iw 117 (434)
.|.+++...++++++...+.+|+|
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEec
Confidence 466677766677777777777776
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.99 E-value=17 Score=32.76 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=55.5
Q ss_pred CeEEEEEecCCCEEEEEecCCcEEEEEcCCCee---EEEc----ccCccCeEEEEEcCC----CeEEEEeC-------CC
Q 046226 196 PITSIAINVSDDTLYSASLDKTIKVWRIRDSKC---IETI----QAHSEPINALVVADD----GVLYSASD-------DA 257 (434)
Q Consensus 196 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~l~s~~~-------dg 257 (434)
..+.|+|.|++++|++ ...|.|++++ ..+.. +..+ .........++++|+ +.|..... ..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999876664 5599999999 44433 3232 124557899999994 53333222 12
Q ss_pred eEEEEecccccC----cceeEEEEEecc---cccCeEEEEEecCCCEEEEEcC
Q 046226 258 TVRVWRRYFYSE----NQLHTLILTLTA---KYSPVKTLTLTLDDGLLYGGCT 303 (434)
Q Consensus 258 ~i~iwd~~~~~~----~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 303 (434)
..+|........ .....+...... .......|.|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 233333221111 111222222222 2345667999999976666543
No 463
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.80 E-value=19 Score=33.12 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=8.9
Q ss_pred EEeeCCEEEEecCC
Q 046226 335 LASVANYVISGSAD 348 (434)
Q Consensus 335 ~~~~~~~l~s~~~d 348 (434)
....+.+++.|+.+
T Consensus 276 ~~~~~~iyv~GG~~ 289 (376)
T PRK14131 276 GYSNGVLLVAGGAN 289 (376)
T ss_pred eeECCEEEEeeccC
Confidence 34566777777754
No 464
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=88.77 E-value=16 Score=32.33 Aligned_cols=208 Identities=8% Similarity=-0.064 Sum_probs=96.7
Q ss_pred cCCCeEEEEEecCCCEEEEEe-cCCcEEEEEcCCCee---------------EEEcccCccCeEEEEEcCCC--eEEEEe
Q 046226 193 HMGPITSIAINVSDDTLYSAS-LDKTIKVWRIRDSKC---------------IETIQAHSEPINALVVADDG--VLYSAS 254 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~--~l~s~~ 254 (434)
+...|.++...+..+.|++-+ ....++++++..... ....-.+........+.... .++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 677899999998888777655 233499999843221 01111233333333333222 455555
Q ss_pred CCCeEEEEecccccCcceeEEEEE----ecccccCeEEEEEecC--CCEEEEEcCCCeEEEEEcCc--cc-ccccccCcc
Q 046226 255 DDATVRVWRRYFYSENQLHTLILT----LTAKYSPVKTLTLTLD--DGLLYGGCTDGYIHYWHKGW--FS-AQLQYGGAL 325 (434)
Q Consensus 255 ~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~--~~-~~~~~~~~~ 325 (434)
...+|.++.... .......... ......++..+..+++ ...+..|+..+...++++.. .. .........
T Consensus 121 ~~~~i~l~~~~~--~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~ 198 (302)
T smart00036 121 LQSSVVLLQWYN--PLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLS 198 (302)
T ss_pred cCCeEEEEEccC--hhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccc
Confidence 666777764431 1001111111 0011123333333333 45777777653344455432 10 000000001
Q ss_pred cCcc-cceEEEEeeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCe
Q 046226 326 QGHT-HAVMCLASVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGV 404 (434)
Q Consensus 326 ~~~~-~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 404 (434)
.... .++..+..+.+.++.+-++ ...+-|...... .....+. -.+...++++.. .+|+.-+. ..
T Consensus 199 ~~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~-~r~~~l~-w~~~p~~~~~~~-----------pyll~~~~-~~ 263 (302)
T smart00036 199 EETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRR-SRNPILH-WEFMPESFAYHS-----------PYLLAFHD-NG 263 (302)
T ss_pred cccccCceEEEEECCCeEEEEECc-EEEEEeCCCCcc-ccceEEE-cCCcccEEEEEC-----------CEEEEEcC-Cc
Confidence 1111 3455555554544444433 344445443111 1111121 233455667663 36666654 45
Q ss_pred EEEEecCCCCccc
Q 046226 405 LKMWRVTRPKSSC 417 (434)
Q Consensus 405 v~iw~~~~~~~~~ 417 (434)
|.++++.+++...
T Consensus 264 ievr~l~~~~l~q 276 (302)
T smart00036 264 IEIRSIKTGELLQ 276 (302)
T ss_pred EEEEECCCCceEE
Confidence 9999999886543
No 465
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.70 E-value=14 Score=31.39 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=70.8
Q ss_pred EEEEEcCCCeeEEEccc-CccCeEEEEEcCCC-eEEEEeC-C--CeEEEEecccccCcceeEEEEEecccccCeEEEEEe
Q 046226 218 IKVWRIRDSKCIETIQA-HSEPINALVVADDG-VLYSASD-D--ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLT 292 (434)
Q Consensus 218 i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~s~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 292 (434)
-.+||+.+++.. .+.. ..-...+-.+.+|| ++.+|+. + ..+++++................-.....-.+...-
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 457888876543 2322 22223333566888 6666664 2 457888754211111111111111222344455667
Q ss_pred cCCCEEEEEcCCC-eEEEEEcCcccc-ccc--ccC----cccCcccceEEEEeeCCEEEEecCCCcEEEEeccCC
Q 046226 293 LDDGLLYGGCTDG-YIHYWHKGWFSA-QLQ--YGG----ALQGHTHAVMCLASVANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 293 ~~~~~l~~~~~dg-~i~i~d~~~~~~-~~~--~~~----~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~ 359 (434)
+||+.|+.|+.+. ...+|.-..... ... +.. .....--+...+..+|++|+.+..+. .|||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 8999999988774 334444211111 111 111 11223345566777899998887654 45677765
No 466
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.43 E-value=2.8 Score=23.84 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=23.8
Q ss_pred cCCCEEEEEe-cCCcEEEEEcCCCeeEEEccc
Q 046226 204 VSDDTLYSAS-LDKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 204 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 234 (434)
|++++|+++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4677666654 578999999998888877765
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.84 E-value=3.4 Score=40.25 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=41.4
Q ss_pred eCCEEEEecCCCcEEEEeccC----CCceeeEEEeecc--------------------ccceeEEEEeecccCCCCCCcc
Q 046226 338 VANYVISGSADSTSRVWAREQ----DGRHTMLAVLVGH--------------------RGPIRCAIAFLGRFGEETEDEY 393 (434)
Q Consensus 338 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~h--------------------~~~v~~~~~~~~~~~~~~~~~~ 393 (434)
++..++.+..||.+....... +..+... .+..+ ...+..+++..... .+.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 230 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEE-LFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI-----NDD 230 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE----------ETT
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEE-EeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee-----CCC
Confidence 677888888899888887764 2111111 11111 12344455554100 016
Q ss_pred cEEEEeecCCeEEEEecCCCCc
Q 046226 394 CTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 394 ~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
.+|++.+.|+++|+||+.+++.
T Consensus 231 ~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 231 TFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp TEEEEEETTSEEEEEETTTTCE
T ss_pred CEEEEEeCCCeEEEEECCCCeE
Confidence 7899999999999999999887
No 468
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.62 E-value=23 Score=32.55 Aligned_cols=196 Identities=15% Similarity=0.114 Sum_probs=97.8
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEeeccCCC--ccEEE-EEEeCCEEEEEEcCCeEEEeecCCCCCceeeEeeeccCCC
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT--SMVVA-MEVSHDRVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTG 177 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~-l~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 177 (434)
.+..++++..||.|.-.|..++..+.....-. ..+.. +......++.++.++.+..+|..+++.........
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~----- 141 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG----- 141 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-----
Confidence 55666667888888888888888664333221 11211 11223478999999988888887666655553211
Q ss_pred CceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeEEEcccCc---cCeEEEEEcCCCeEEEEe
Q 046226 178 GAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCIETIQAHS---EPINALVVADDGVLYSAS 254 (434)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~s~~ 254 (434)
.-.+..-.+. ....++.++.++.+...|..+++.+....... ..+..-....++.++.+.
T Consensus 142 ----------------~~~~~~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~ 204 (370)
T COG1520 142 ----------------SPYYASPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS 204 (370)
T ss_pred ----------------CeEEecCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec
Confidence 0001111111 23344444467888888888888766644322 111111112344555555
Q ss_pred C--CCeEEEEecccccCcceeEEEEEecccccCe------EEEEEecCCCEEEEEcCCCeEEEEEcCcccccccc
Q 046226 255 D--DATVRVWRRYFYSENQLHTLILTLTAKYSPV------KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQY 321 (434)
Q Consensus 255 ~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 321 (434)
. ++.+.-.|.. .+................+ ..-.+. .+..++.++.++.+...|..+.+...+.
T Consensus 205 ~~~~~~~~a~~~~--~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~~W~~ 276 (370)
T COG1520 205 DGYDGILYALNAE--DGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGELIWSF 276 (370)
T ss_pred CCCcceEEEEEcc--CCcEeeeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCceEEEE
Confidence 5 5545555543 2222222111111111101 000111 1223456667777777787665555543
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.60 E-value=10 Score=34.78 Aligned_cols=170 Identities=13% Similarity=0.075 Sum_probs=91.0
Q ss_pred EEcccCccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecc-cccCeE-EEEEecCCCEEEEEcCCCe
Q 046226 230 ETIQAHSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTA-KYSPVK-TLTLTLDDGLLYGGCTDGY 306 (434)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~~dg~ 306 (434)
..+......|..+-..||+ .+..-+. ..+.++++....-+. .+......+ ....|+ .+..-..|.-+++++.||.
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~ 291 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-RKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL 291 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-hhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence 3344455677888889999 3333322 678888876211111 111111011 001111 1122235667888999999
Q ss_pred EEEE-EcCcccc-cccccCcccCcccceEEEEeeC--CEEEEecCCCcEEEEeccCCCceeeEEEeeccccceeEEEEee
Q 046226 307 IHYW-HKGWFSA-QLQYGGALQGHTHAVMCLASVA--NYVISGSADSTSRVWAREQDGRHTMLAVLVGHRGPIRCAIAFL 382 (434)
Q Consensus 307 i~i~-d~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 382 (434)
|.-| |.+.... .......++-....+..+..+. +-+++-...|++.++..... +.+- +..--..+.-++++|
T Consensus 292 vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~---~~lL-~~~~~~~~~~~~~Sp 367 (733)
T COG4590 292 VSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE---KLLL-FERAYQAPQLVAMSP 367 (733)
T ss_pred eeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC---ccee-hhhhhcCcceeeeCc
Confidence 8877 4432221 1122222222223444444443 36777788888888865543 1111 111222455688999
Q ss_pred cccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 383 GRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 383 ~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
. +.++++-. .|.++++.+++..+
T Consensus 368 ~---------~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 368 N---------QAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred c---------cchheeec-CCceEEEEecCCCC
Confidence 8 77887753 57899999987654
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.58 E-value=10 Score=28.54 Aligned_cols=111 Identities=8% Similarity=-0.012 Sum_probs=60.6
Q ss_pred EEcCCC-eEEEEeCCCeEEEEecccccCcce-eEEEEEecccccCeEEEEEec-----CCCEEEEEcCCCeEEEEEcCcc
Q 046226 243 VVADDG-VLYSASDDATVRVWRRYFYSENQL-HTLILTLTAKYSPVKTLTLTL-----DDGLLYGGCTDGYIHYWHKGWF 315 (434)
Q Consensus 243 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~ 315 (434)
.|.... .|++++.-|+|.|++......... ......+-.....|++++-.+ +...|+.|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 344334 788888889999998652221110 111112222345677776544 345676666 456999998754
Q ss_pred cccccccCcccCcccceEEEEee-----CCEEEEecCCCcEEEEeccCC
Q 046226 316 SAQLQYGGALQGHTHAVMCLASV-----ANYVISGSADSTSRVWAREQD 359 (434)
Q Consensus 316 ~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~i~iwd~~~~ 359 (434)
...+. +.+. ..|.++.+- ..-++..+.+..|.-||.+..
T Consensus 84 ~d~Fy--ke~~---DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 84 SDLFY--KEVP---DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred chhhh--hhCc---cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 43332 2222 344555441 234444555778888887654
No 471
>PLN02153 epithiospecifier protein
Probab=87.54 E-value=22 Score=32.23 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=14.6
Q ss_pred CCCEEEEEecC-----CcEEEEEcCCCe
Q 046226 205 SDDTLYSASLD-----KTIKVWRIRDSK 227 (434)
Q Consensus 205 ~~~~l~s~~~d-----g~i~vwd~~~~~ 227 (434)
++++++.|+.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45566666643 357888887653
No 472
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=87.40 E-value=20 Score=32.71 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=67.0
Q ss_pred EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEE-------ecCC
Q 046226 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSA-------SLDK 216 (434)
Q Consensus 144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-------~~dg 216 (434)
.+..-+..+.|-+|+..+.+.......... ...+.-.-+.|.+...+++.. ..++
T Consensus 237 ~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~------------------dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~ 298 (465)
T KOG2714|consen 237 QLVALSSVGKIGVWHAVTQQAQDVQPISSY------------------DSAGSFLKLGWLNGSNLLIDSQKFPLRMKDND 298 (465)
T ss_pred hhhhccccccccccchhhhceeeeeeccCc------------------cccCChhhhccccCceeEEEEeeccccccCCc
Confidence 444556678899998876633222221111 122223334444433333322 3467
Q ss_pred cEEEEEcCCCeeEEEcccCccCeEEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCC
Q 046226 217 TIKVWRIRDSKCIETIQAHSEPINALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDG 296 (434)
Q Consensus 217 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 296 (434)
.|++||.+... +...|. .++.++..+.+++-+..............++..|..+..
T Consensus 299 ~i~~~d~Rd~n------------~~~~W~---~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L~--------- 354 (465)
T KOG2714|consen 299 LIVTEDFRDRN------------TSGNWI---EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPLG--------- 354 (465)
T ss_pred eEEEeeccCCC------------ccceEE---EecCCccccceEeeeccccccCCCCeEEEEEEecCCCcc---------
Confidence 88889887654 112332 355566667777776553333333444455555555421
Q ss_pred EEEEEcCCCeEEEEEcCcc
Q 046226 297 LLYGGCTDGYIHYWHKGWF 315 (434)
Q Consensus 297 ~l~~~~~dg~i~i~d~~~~ 315 (434)
++=.+...+.+++|.....
T Consensus 355 ~idv~~~~~~~~~~~~tr~ 373 (465)
T KOG2714|consen 355 LIDVCSDGGHVRVWNSTRF 373 (465)
T ss_pred eeehhhhCCcceEEeeccc
Confidence 2223444567889987543
No 473
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=87.37 E-value=35 Score=34.59 Aligned_cols=142 Identities=14% Similarity=0.259 Sum_probs=80.0
Q ss_pred eCCCeEEEecCCCceeEeeccCCCccEEEEEE---eCC-------EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCC
Q 046226 109 SDSNVIRIWKQPEFTECGRLKAKTSMVVAMEV---SHD-------RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGG 178 (434)
Q Consensus 109 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~---~~~-------~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 178 (434)
+.|+.+.+||+.++..-+.+..-...|..+.. .|+ .++..+....+.++-+..++....+.+... +
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnT---g- 174 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNT---G- 174 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEec---c-
Confidence 35788999999877666555544444555443 222 223333344455554433332222211100 0
Q ss_pred ceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCC--------ee-------------E---EEccc
Q 046226 179 AVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDS--------KC-------------I---ETIQA 234 (434)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--------~~-------------~---~~~~~ 234 (434)
+ ...-..-.|.|+.-+.+|+.+++|-.| +.+|.+.-. ++ + ..+..
T Consensus 175 ----l-----~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~i 243 (1263)
T COG5308 175 ----L-----VVSVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGI 243 (1263)
T ss_pred ----e-----EEeccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCC
Confidence 0 000133568888888889999988877 777776310 10 0 11223
Q ss_pred CccCeEEEEEcCCC-eEEEEeCCCeEEEEecc
Q 046226 235 HSEPINALVVADDG-VLYSASDDATVRVWRRY 265 (434)
Q Consensus 235 ~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~ 265 (434)
|...|..+++.... .|.+-.....|+-|.+.
T Consensus 244 pgetI~Ql~vDqsRg~ly~Lr~kS~Vray~it 275 (1263)
T COG5308 244 PGETIKQLAVDQSRGLLYVLRKKSAVRAYSIT 275 (1263)
T ss_pred cccchhheeecccccceeeecccceeeeEeee
Confidence 66778888887655 77777788888888764
No 474
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.36 E-value=19 Score=31.45 Aligned_cols=214 Identities=12% Similarity=0.102 Sum_probs=117.7
Q ss_pred CCeEEEEEecCCCEEEEEecCCcEEEEEcC------CC-eeEEEccc-----CccCeEEEEEcCCC-------------e
Q 046226 195 GPITSIAINVSDDTLYSASLDKTIKVWRIR------DS-KCIETIQA-----HSEPINALVVADDG-------------V 249 (434)
Q Consensus 195 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~-------------~ 249 (434)
..-+.|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+... .
T Consensus 23 ~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 346789999998877777778899999986 12 22333332 12345666665321 4
Q ss_pred EEEEeCCCeEEEEecccccCcceeEEEEEecccccCe-EEEEEec--CCCEEEEE-cCCCeEEEEEcCccccccc--cc-
Q 046226 250 LYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPV-KTLTLTL--DDGLLYGG-CTDGYIHYWHKGWFSAQLQ--YG- 322 (434)
Q Consensus 250 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~--~~- 322 (434)
++.+++||+|.-|.............+..-......| ..+++.. .+.+|+.+ -..++|.+||-.-...... +.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 7888999999999753111100011111111112233 3455543 35566555 4589999998542221110 00
Q ss_pred CcccCcccceEEEE-eeCCE-------------EEEecCCCcEEEEeccCCCceeeEEEee--ccccceeEEEEeecccC
Q 046226 323 GALQGHTHAVMCLA-SVANY-------------VISGSADSTSRVWAREQDGRHTMLAVLV--GHRGPIRCAIAFLGRFG 386 (434)
Q Consensus 323 ~~~~~~~~~v~~~~-~~~~~-------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~ 386 (434)
..+...-.+ ..+. ..+++ =+.|..-|.|-+||+.. ..++.+. +.-..-+.|+..|..++
T Consensus 183 P~iPagyAP-FnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 183 PALPAGYAP-FNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCCC-cceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhC
Confidence 001111011 1111 11222 23344457899999875 4555552 23345567888876543
Q ss_pred CCCCCcccEEEEeecCCeEEEEecCCCCcc
Q 046226 387 EETEDEYCTICTGSLDGVLKMWRVTRPKSS 416 (434)
Q Consensus 387 ~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~~ 416 (434)
. ..+.+|+---.||+|..+|..+++.+
T Consensus 258 ~---~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 258 S---LSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred C---CCCCeEEeecCCceeEEecCCCCcee
Confidence 2 22567776667999999999888754
No 475
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.12 E-value=24 Score=32.35 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCeEEEEe------------CCC-eEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC
Q 046226 238 PINALVVADDGVLYSAS------------DDA-TVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD 304 (434)
Q Consensus 238 ~v~~~~~~~~~~l~s~~------------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 304 (434)
....|+|.++|.|+++. ..+ .|.+++-....+. ......+.........+++.+++ |++++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~--~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK--YDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC--cceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 45678888888444443 122 6666643211111 11112222223456788998888 4445544
Q ss_pred CeEEEEEc
Q 046226 305 GYIHYWHK 312 (434)
Q Consensus 305 g~i~i~d~ 312 (434)
...++.|.
T Consensus 91 ~i~~~~d~ 98 (367)
T TIGR02604 91 DILFLRDK 98 (367)
T ss_pred eEEEEeCC
Confidence 43334344
No 476
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=87.02 E-value=18 Score=30.85 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=49.8
Q ss_pred CcCCCeEEEEEecC-------CCEEEEEecCCcEEEEEcCCCeeEEEcccCccCeEEEE----Ec-CCCeEEEEeCCCeE
Q 046226 192 KHMGPITSIAINVS-------DDTLYSASLDKTIKVWRIRDSKCIETIQAHSEPINALV----VA-DDGVLYSASDDATV 259 (434)
Q Consensus 192 ~~~~~v~~~~~~~~-------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~----~~-~~~~l~s~~~dg~i 259 (434)
.+...|+||+--.. -..|+.|+++|.|.|.|-+....+..+....-++ .+. +. -|.+++.++.||.|
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEE
Confidence 35667888876431 2579999999999999998888777776554444 222 22 23388999999988
Q ss_pred EEE
Q 046226 260 RVW 262 (434)
Q Consensus 260 ~iw 262 (434)
.+.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 764
No 477
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.88 E-value=40 Score=34.59 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=43.4
Q ss_pred EEEEcCCEEEEEeCCCeEEEecCCCceeEe---e------c--cCCCccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCC
Q 046226 97 CIAVGNGFIYTGSDSNVIRIWKQPEFTECG---R------L--KAKTSMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNG 164 (434)
Q Consensus 97 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~------~--~~~~~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~ 164 (434)
|++--|+.|+.|+.||.+.+|.+....... . + .-+..+|..+...+. .++..-.|+.|.++++..-+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence 555589999999999999999876532111 1 0 012456666665554 444555677788887765443
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.45 E-value=22 Score=31.14 Aligned_cols=230 Identities=17% Similarity=0.171 Sum_probs=111.2
Q ss_pred EEEEEEeCC--EEEEEEcCCeEEEeecCCCC---CceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCC---
Q 046226 135 VVAMEVSHD--RVYAAYGDGKIRVWRSTWDN---GVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSD--- 206 (434)
Q Consensus 135 v~~l~~~~~--~l~~~s~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 206 (434)
-+.|+++|. ..++....+...+||..... ....+.+ .++..... ......+.+.|+...
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~v-tiP~~~~~------------~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVV-VIPAPPPL------------AAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEE-EecCCCCC------------CCCCCccEEEEeCCCceE
Confidence 478899986 44445557889999986221 1111111 11110000 122345555555322
Q ss_pred ---------CEEEEEecCCcEEEEEcCCCee-----EEEccc-CccCe-EEEEEcCC--C-e-EEEEeCCCeEEEEeccc
Q 046226 207 ---------DTLYSASLDKTIKVWRIRDSKC-----IETIQA-HSEPI-NALVVADD--G-V-LYSASDDATVRVWRRYF 266 (434)
Q Consensus 207 ---------~~l~s~~~dg~i~vwd~~~~~~-----~~~~~~-~~~~v-~~~~~~~~--~-~-l~s~~~dg~i~iwd~~~ 266 (434)
..++.+++||+|.-|...-+.. ...+.. ....| ..+++... + + .++=-..++|.+||-..
T Consensus 92 vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 92 VSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 2367788999999998532221 122221 12333 34555432 3 4 44445789999998652
Q ss_pred ccCcceeEEE-EEecccccC-----------eEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEE
Q 046226 267 YSENQLHTLI-LTLTAKYSP-----------VKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMC 334 (434)
Q Consensus 267 ~~~~~~~~~~-~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~ 334 (434)
.......... ..+.....+ |+-..-.++.+.=+.|..-|.|-+||+...-.. .+ .-.+.-..-+.
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~--as~g~LNaPWG 248 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RV--ASSGRLNAPWG 248 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-Ee--ccCCcccCCce
Confidence 1100000000 000111111 111111223333334445678999987532111 11 11122223344
Q ss_pred EE--------eeCCEEEEecCCCcEEEEeccCCCceeeEEEeeccc------cceeEEEEeec
Q 046226 335 LA--------SVANYVISGSADSTSRVWAREQDGRHTMLAVLVGHR------GPIRCAIAFLG 383 (434)
Q Consensus 335 ~~--------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~h~------~~v~~~~~~~~ 383 (434)
|+ +++.+|+---.||+|..||..++ ..+..+..-. ..++.++|-..
T Consensus 249 ~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG---~~~g~L~~~~G~pi~i~GLWgL~fGng 308 (336)
T TIGR03118 249 LAIAPESFGSLSGALLVGNFGDGTINAYDPQSG---AQLGQLLDPDNHPVKVDGLWSLTFGNG 308 (336)
T ss_pred eeeChhhhCCCCCCeEEeecCCceeEEecCCCC---ceeeeecCCCCCeEEecCeEEeeeCCC
Confidence 43 34667877778999999999887 4444444332 23566776553
No 479
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.26 E-value=26 Score=31.95 Aligned_cols=203 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred ecCCCEEEEEecCCcEEEEEcCCCeeEEEccc----CccCeEEEEEcCCC--eEEEEeCC---CeEEEEecccccCccee
Q 046226 203 NVSDDTLYSASLDKTIKVWRIRDSKCIETIQA----HSEPINALVVADDG--VLYSASDD---ATVRVWRRYFYSENQLH 273 (434)
Q Consensus 203 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~--~l~s~~~d---g~i~iwd~~~~~~~~~~ 273 (434)
.|...+++....++-+.+||+ .|+.++.+.. .-.-...+.+.... ++++...+ ..|++|.+. ......
T Consensus 65 dp~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id--~~~g~L 141 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRID--PDTGEL 141 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEE--TTTTEE
T ss_pred CcccceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEec--CCCCcc
Q ss_pred EEEEE----ecccccCeEEEEEecCCC----EEEEEcCCCeEEEEEcC---cccccccccCcccCcccceEEEEeeCC-E
Q 046226 274 TLILT----LTAKYSPVKTLTLTLDDG----LLYGGCTDGYIHYWHKG---WFSAQLQYGGALQGHTHAVMCLASVAN-Y 341 (434)
Q Consensus 274 ~~~~~----~~~~~~~v~~~~~~~~~~----~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 341 (434)
..+.. +......+..+|+-.+.. ++++...+|.+..|.+. ......+....+......=-|+.-+.. +
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR 221 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Q ss_pred EEEecCCCcEEEEecc--CCCceeeEEEeec--cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCC
Q 046226 342 VISGSADSTSRVWARE--QDGRHTMLAVLVG--HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRP 413 (434)
Q Consensus 342 l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~ 413 (434)
|+.+-+|.-|.-|+.+ .+.....+....+ ....|-.|++... ....|.+|+|.=.+++..+|+....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~-----~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYG-----SDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE------CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEec-----CCCCeEEEEEcCCCCeEEEEecCCC
No 480
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.81 E-value=8.1 Score=30.93 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=29.9
Q ss_pred cceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCC
Q 046226 373 GPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTR 412 (434)
Q Consensus 373 ~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~ 412 (434)
..+.+++|||.+.+.. .+.+|++...+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~---~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPN---GRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCC---CceEEEEEcCCCeEEEEecCC
Confidence 3788999999764332 377999999999999999764
No 481
>PLN02193 nitrile-specifier protein
Probab=85.65 E-value=34 Score=32.66 Aligned_cols=64 Identities=5% Similarity=-0.117 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCC-----eEEEEEcCcccccccccCc---ccCcccceEEEEeeCCEEEEecCC----CcEEEEeccCC
Q 046226 294 DDGLLYGGCTDG-----YIHYWHKGWFSAQLQYGGA---LQGHTHAVMCLASVANYVISGSAD----STSRVWAREQD 359 (434)
Q Consensus 294 ~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s~~~d----g~i~iwd~~~~ 359 (434)
++++++.|+.++ .+..||+.+.. +..... ..............++.++.++.+ ..+.+||+.+.
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence 456666666543 46677765332 211111 111111122334567777777755 46899999875
No 482
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=85.21 E-value=2.5 Score=22.58 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.1
Q ss_pred CCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226 206 DDTLYSASLDKTIKVWRIRDSKCIETI 232 (434)
Q Consensus 206 ~~~l~s~~~dg~i~vwd~~~~~~~~~~ 232 (434)
+..++.++.+|.+..+|.++|+.+..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 346788888999999999999887654
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=84.57 E-value=27 Score=30.53 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=62.5
Q ss_pred CeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEc------CCCeEEEEEcCcccccccccCc-c-cCc
Q 046226 257 ATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGC------TDGYIHYWHKGWFSAQLQYGGA-L-QGH 328 (434)
Q Consensus 257 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-~-~~~ 328 (434)
..|++||.. ..+....-.+-.+.|+.+.|..+.++++.|. ....+..||+.... +..... . ..-
T Consensus 16 ~~lC~yd~~------~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~i 87 (281)
T PF12768_consen 16 PGLCLYDTD------NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSI 87 (281)
T ss_pred CEEEEEECC------CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccC
Confidence 468999976 2223333333567899999987767777664 45678889876432 211111 0 112
Q ss_pred ccceEEEEe---eCC-EEEEec-CCC--cEEEEeccCCCceeeEEE-eeccccceeEEEEeec
Q 046226 329 THAVMCLAS---VAN-YVISGS-ADS--TSRVWAREQDGRHTMLAV-LVGHRGPIRCAIAFLG 383 (434)
Q Consensus 329 ~~~v~~~~~---~~~-~l~s~~-~dg--~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 383 (434)
.++|..+.+ ++. +.+.|. .+| .|..||-. .+..+.. .......|..+.+.|-
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs---~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS---SWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC---ceEeccccccCCCCEEEEEEEEec
Confidence 356666666 333 444443 344 45556432 3344433 2233456666666654
No 484
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=84.41 E-value=39 Score=32.33 Aligned_cols=148 Identities=15% Similarity=0.219 Sum_probs=81.6
Q ss_pred ccccEEEEEE-cCCEEEEEeCCCeEEEecCCCceeEeeccCCC-ccEEEEEEeCC-EEEEEEcCCeEEEeecCCCCCcee
Q 046226 91 KDGQILCIAV-GNGFIYTGSDSNVIRIWKQPEFTECGRLKAKT-SMVVAMEVSHD-RVYAAYGDGKIRVWRSTWDNGVKH 167 (434)
Q Consensus 91 h~~~v~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~-~l~~~s~dg~i~vwd~~~~~~~~~ 167 (434)
-..+|.++.+ -.+.+..|+.|| +..||..+++.+..-.... .+|..+..+-. .+.+|+.+| |.+.+.+.......
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcccccc
Confidence 4567888888 456788888887 4466777777666544333 55666555444 788888777 66665443110000
Q ss_pred eEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe-eEEEcccC--ccCeEEEEE
Q 046226 168 VKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK-CIETIQAH--SEPINALVV 244 (434)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~--~~~v~~~~~ 244 (434)
. . .-..+.|..+.-.. ...+-.|+++|..+. ...... .....+.| ...|.++..
T Consensus 241 ~---------~------------~lp~~~I~ll~qD~-qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~ 297 (671)
T COG3292 241 G---------P------------MLPSGNILLLVQDA-QGELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWL 297 (671)
T ss_pred C---------C------------CCcchheeeeeccc-CCCEEEeecccceeE-ecCCCCccccccccCCccccccceee
Confidence 0 0 00122233333222 335666776664432 222222 11112222 345677777
Q ss_pred cCCCeEEEEeCCCeEEEEe
Q 046226 245 ADDGVLYSASDDATVRVWR 263 (434)
Q Consensus 245 ~~~~~l~s~~~dg~i~iwd 263 (434)
..+|-+.+++.+|.+++-+
T Consensus 298 D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 298 DTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred ccCCCEeeeccCceEEEec
Confidence 7778888898888887654
No 485
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.31 E-value=22 Score=29.34 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=41.9
Q ss_pred EEEEEcCCCeEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCC---C---eEEEE
Q 046226 240 NALVVADDGVLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTD---G---YIHYW 310 (434)
Q Consensus 240 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~ 310 (434)
..++..+.+.|+.+...+.|.+|++. .........+..- +.|..+.++..|++|++--.+ . .+++|
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~----~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLE----QEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcc----cCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 34444553444444667789999987 1222333344433 788999999999999986432 2 56665
No 486
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=83.95 E-value=49 Score=33.34 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.0
Q ss_pred ccEEEEEEeCCEEEEEEcCCeEEEeecCCCCC
Q 046226 133 SMVVAMEVSHDRVYAAYGDGKIRVWRSTWDNG 164 (434)
Q Consensus 133 ~~v~~l~~~~~~l~~~s~dg~i~vwd~~~~~~ 164 (434)
..|.+++.+.+.-++-+.+|.|.-|-++....
T Consensus 229 h~~~qisvs~~HslvLT~~g~Vys~GlN~~hq 260 (1267)
T KOG0783|consen 229 HKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQ 260 (1267)
T ss_pred cceEEEEeecceeEEEeecceEEEeecCcccc
Confidence 35788888888777778899999998765443
No 487
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=83.79 E-value=37 Score=31.60 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=82.6
Q ss_pred CEEEEEEcCCeEEEeecCCCCCc-eeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec-----CCCEEEEEecCC
Q 046226 143 DRVYAAYGDGKIRVWRSTWDNGV-KHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV-----SDDTLYSASLDK 216 (434)
Q Consensus 143 ~~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg 216 (434)
+.+++|+..|.++||+....... ...-+. ..-..+|..+..-. +...|++ -.-.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE-------------------~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~ 97 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLE-------------------TQLKDPILQVECGKFVSGSEDLQLAV-LHPR 97 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEE-------------------EecCCcEEEEEeccccCCCCcceEEE-ecCC
Confidence 48999999999999997543311 111110 02445666666532 1223333 4456
Q ss_pred cEEEEEcCC--Ce-------eEEEcccCc--cCeEEEEEcC----CC--eEEEEeCCCeEEEEecccccCcceeEEEEEe
Q 046226 217 TIKVWRIRD--SK-------CIETIQAHS--EPINALVVAD----DG--VLYSASDDATVRVWRRYFYSENQLHTLILTL 279 (434)
Q Consensus 217 ~i~vwd~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 279 (434)
.+.+|.+.. |. .+..+..|. .....+++-+ .+ ++..-+.||.+.+|+-+ .......+
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe------~~~f~~~l 171 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE------SFAFSRFL 171 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC------cEEEEEEc
Confidence 677777621 11 122222232 1222333322 22 78889999999999754 22222222
Q ss_pred cccccCeEEEEEecCCCEEEEEcCCCeEEEEEcC
Q 046226 280 TAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKG 313 (434)
Q Consensus 280 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 313 (434)
.. .--...++|.+.-..|++++.+..+..|...
T Consensus 172 p~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 172 PD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 22 2334457888888999999999999999753
No 488
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.77 E-value=43 Score=32.31 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=113.1
Q ss_pred EEEEEEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCc-CCCeEEEEEecCC-CEEEEEec--CCcEE
Q 046226 144 RVYAAYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKH-MGPITSIAINVSD-DTLYSASL--DKTIK 219 (434)
Q Consensus 144 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-~~l~s~~~--dg~i~ 219 (434)
.++.+..+|.+....+..... .+.+.. .+. .....++.+..++ .+|+.|+. |+.+.
T Consensus 224 ~~lL~~e~G~l~~l~l~~~~~--~i~i~~------------------~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~ 283 (504)
T PF10433_consen 224 RILLQDEDGDLYLLTLDNDGG--SISITY------------------LGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLL 283 (504)
T ss_dssp EEEEEETTSEEEEEEEEEEEE--EEEEEE------------------EEE--S-ESEEEEESTT--EEEEEESSS-EEEE
T ss_pred EEEEEeCCCeEEEEEEEECCC--eEEEEE------------------cCCcCChhheEEEEcCCCEEEEEEEecCCcEEE
Confidence 788899999998887754332 111100 022 4455666666554 36777765 45566
Q ss_pred EEEcCCCeeEEEcccCccCeEEEEEcCC-----C------eEEEEe---CCCeEEEEecccccCcceeEEEEEeccc--c
Q 046226 220 VWRIRDSKCIETIQAHSEPINALVVADD-----G------VLYSAS---DDATVRVWRRYFYSENQLHTLILTLTAK--Y 283 (434)
Q Consensus 220 vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~------~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~ 283 (434)
.|....-+.+..+. .-++|.++++.+. . .+++++ .+|.+++..-- -............ -
T Consensus 284 ~~~~~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~G----i~~~~~~~~~~~l~~v 358 (504)
T PF10433_consen 284 QISLSNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNG----IGIEGLELASSELPGV 358 (504)
T ss_dssp EEESESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEES----BEEE--EEEEEEESTE
T ss_pred EEeCCCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEecc----CCceeeeeeccCCCCc
Confidence 66654455555555 4568888888532 1 345553 56889887421 1111011111111 2
Q ss_pred cCeEEEEEec-CCCEEEEEcCCCeEEEEEcCc--ccccc-cc-cCcccCcccceEEEEeeCCEEEEecCCCcEEEEeccC
Q 046226 284 SPVKTLTLTL-DDGLLYGGCTDGYIHYWHKGW--FSAQL-QY-GGALQGHTHAVMCLASVANYVISGSADSTSRVWAREQ 358 (434)
Q Consensus 284 ~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~--~~~~~-~~-~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~ 358 (434)
..+..+.... ++.+|+.+..+. -+++.+.. ..... +. ...+......+.+-...++.++=.... .|++.+...
T Consensus 359 ~~iW~l~~~~~~~~~lv~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~ 436 (504)
T PF10433_consen 359 TGIWTLKLSSSDHSYLVLSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLED 436 (504)
T ss_dssp EEEEEE-SSSSSBSEEEEEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSS
T ss_pred eEEEEeeecCCCceEEEEEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCC
Confidence 2333443322 245666666544 44555531 11111 11 002223334454444546666666644 488888766
Q ss_pred CCceeeEEEeec-cccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCCc
Q 046226 359 DGRHTMLAVLVG-HRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPKS 415 (434)
Q Consensus 359 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~~ 415 (434)
. +....+.. ....|.+.+.. +.+++.+-.++.+..+.+.....
T Consensus 437 ~---~~~~~w~~~~~~~I~~a~~~-----------~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 437 G---KLTQEWKPPAGSIIVAASIN-----------DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp T---SEEEEEE-TTS---SEEEES-----------SSEEEEEE-TTEEEEEEEETTEE
T ss_pred C---eEEEEEeCCCCCeEEEEEEC-----------CCEEEEEEeCCcEEEEEEECCce
Confidence 5 34433322 34456656555 34677777789999999887654
No 489
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.46 E-value=23 Score=29.01 Aligned_cols=105 Identities=11% Similarity=0.017 Sum_probs=59.4
Q ss_pred EEE-cCCEEEEEeCC--CeEEEecCCCceeEeeccCCCccE--EEEEEeCCEEEEEE-cCCeEEEeecCCCCCceeeEee
Q 046226 98 IAV-GNGFIYTGSDS--NVIRIWKQPEFTECGRLKAKTSMV--VAMEVSHDRVYAAY-GDGKIRVWRSTWDNGVKHVKLA 171 (434)
Q Consensus 98 ~~~-~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~~~~~v--~~l~~~~~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~ 171 (434)
+.+ +|.++.+.+.- ..|++||+.+++.+..-+-....+ ..+.-..+.++.-. .+|.-..+|.++-+.+..+.
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-- 128 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-- 128 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc--
Confidence 444 56666665543 489999999988877644332222 12223344444333 47778888887666555542
Q ss_pred eccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe
Q 046226 172 TIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK 227 (434)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 227 (434)
..+.=+.++ .|+..|..+....+++.-|.++..
T Consensus 129 ---------------------y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 129 ---------------------YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ---------------------cCCcceeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 223333443 345556666555667777766543
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.17 E-value=3.1 Score=23.33 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.1
Q ss_pred EEEEEecCCcEEEEEcCCCeeEEEccc
Q 046226 208 TLYSASLDKTIKVWRIRDSKCIETIQA 234 (434)
Q Consensus 208 ~l~s~~~dg~i~vwd~~~~~~~~~~~~ 234 (434)
.++.++.+|.|.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456678999999999999999988764
No 491
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.11 E-value=3.5 Score=21.94 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=21.2
Q ss_pred cCCEEEEEeCCCeEEEecCCCceeEee
Q 046226 101 GNGFIYTGSDSNVIRIWKQPEFTECGR 127 (434)
Q Consensus 101 ~~~~l~tg~~dg~i~iwd~~~~~~~~~ 127 (434)
.+..+++++.+|.+..+|..+++.+..
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 344678888899999999988887654
No 492
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=82.62 E-value=49 Score=32.04 Aligned_cols=182 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred cCCcEEEEEcCCCeeEEEccc--CccCeEEEEEcCCC-eEEEEeCCCeEEEEecccccCcceeEEEEEecccccCeEEEE
Q 046226 214 LDKTIKVWRIRDSKCIETIQA--HSEPINALVVADDG-VLYSASDDATVRVWRRYFYSENQLHTLILTLTAKYSPVKTLT 290 (434)
Q Consensus 214 ~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 290 (434)
..+.|.+.| ...+.+..+.+ ....|.++.|-.+. +++|--.---+.+.|+. .......+..-+-+-.+=-
T Consensus 302 s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLs------dP~~P~vlGeLKIPGfS~Y 374 (521)
T PF09826_consen 302 SSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLS------DPANPKVLGELKIPGFSDY 374 (521)
T ss_pred ceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECC------CCCCCceeeEEECccchhc
Q ss_pred Eec--CCCEEEEEcCCCe-----------EEEEEcCcccccccccCcccCcccceEEEEee--------CCEEEEecCC-
Q 046226 291 LTL--DDGLLYGGCTDGY-----------IHYWHKGWFSAQLQYGGALQGHTHAVMCLASV--------ANYVISGSAD- 348 (434)
Q Consensus 291 ~~~--~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~s~~~d- 348 (434)
++| ++.+|-.|-.... |.+||+.....+.+.....-+....-..+..+ .+-++.-=-.
T Consensus 375 LHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~ 454 (521)
T PF09826_consen 375 LHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSS 454 (521)
T ss_pred eeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEE
Q ss_pred -------CcEEEEeccCCCceeeEEEeeccccc------eeEEEEeecccCCCCCCcccEEEEeecCCeEEEEecCCCC
Q 046226 349 -------STSRVWAREQDGRHTMLAVLVGHRGP------IRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMWRVTRPK 414 (434)
Q Consensus 349 -------g~i~iwd~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw~~~~~~ 414 (434)
..++++++...........+...... +....+. +..|.+.+ ++.|+.+++++-+
T Consensus 455 ~~~~~~~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi-----------~d~lYtvS-~~~i~~~~l~t~~ 521 (521)
T PF09826_consen 455 SYGYFNFQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYI-----------GDTLYTVS-DNGIKAYDLNTLE 521 (521)
T ss_pred ccCccccceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEE-----------CCEEEEEE-CCEEEEEehHhcC
No 493
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=82.45 E-value=11 Score=38.26 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=43.7
Q ss_pred EEEEEEcCCEEEEEeCCCeEEEecCCCc--eeEee---ccCCCccEEEEEEeCC--EEEEEEcCCeEEEeecCCC
Q 046226 95 ILCIAVGNGFIYTGSDSNVIRIWKQPEF--TECGR---LKAKTSMVVAMEVSHD--RVYAAYGDGKIRVWRSTWD 162 (434)
Q Consensus 95 v~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~---~~~~~~~v~~l~~~~~--~l~~~s~dg~i~vwd~~~~ 162 (434)
+.++......+++|..-|.+.+++.... ..... ...+...+.-+.|.|+ .++.+-..|...+|.....
T Consensus 153 c~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 153 CCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred eeeccchhhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 3334448899999999999999987542 22221 1223346666777776 5555666788888875443
No 494
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.26 E-value=37 Score=30.43 Aligned_cols=24 Identities=0% Similarity=-0.024 Sum_probs=15.4
Q ss_pred cCCCEEEEEecCC----cEEEEEcCCCe
Q 046226 204 VSDDTLYSASLDK----TIKVWRIRDSK 227 (434)
Q Consensus 204 ~~~~~l~s~~~dg----~i~vwd~~~~~ 227 (434)
.++++.+.|+.++ .+.+||.++.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3566777776653 35688887654
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.88 E-value=16 Score=29.22 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=25.1
Q ss_pred CCeEEEEEecCC------CEEEEEecCCcEEEEEcCC
Q 046226 195 GPITSIAINVSD------DTLYSASLDKTIKVWRIRD 225 (434)
Q Consensus 195 ~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~~ 225 (434)
..|..++|+|.| -+|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999953 4688889999999998653
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.57 E-value=45 Score=30.94 Aligned_cols=289 Identities=10% Similarity=0.005 Sum_probs=135.0
Q ss_pred cccceeeeEEEeeccccEEEEEE---cCCEEEEEeCCCeEEEecC--CCceeEeeccC-----CCccEEEEEEeCCEEEE
Q 046226 78 TSSSYRCISSVLKKDGQILCIAV---GNGFIYTGSDSNVIRIWKQ--PEFTECGRLKA-----KTSMVVAMEVSHDRVYA 147 (434)
Q Consensus 78 ~~~~~~~~~~~~~h~~~v~~~~~---~~~~l~tg~~dg~i~iwd~--~~~~~~~~~~~-----~~~~v~~l~~~~~~l~~ 147 (434)
.-++|+.+..-......+++|.| +.+.-+..+.+|.|.-=+- ++.+... ... -.....++.|..+..++
T Consensus 73 ~G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~-~~~~~~~~~~~~l~~v~f~~~~g~~ 151 (398)
T PLN00033 73 QSSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRS-IPSAEDEDFNYRFNSISFKGKEGWI 151 (398)
T ss_pred CCCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECc-cCcccccccccceeeeEEECCEEEE
Confidence 45678887766666778999999 4445555555665543210 1122211 110 01235777777666666
Q ss_pred EEcCCeEEEeecCCCCCceeeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCe
Q 046226 148 AYGDGKIRVWRSTWDNGVKHVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSK 227 (434)
Q Consensus 148 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 227 (434)
++..|.|..- .+.++.-....... ........+....++...+++ ..|.|..-+ +.|+
T Consensus 152 vG~~G~il~T-~DgG~tW~~~~~~~-------------------~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~-D~G~ 209 (398)
T PLN00033 152 IGKPAILLHT-SDGGETWERIPLSP-------------------KLPGEPVLIKATGPKSAEMVT-DEGAIYVTS-NAGR 209 (398)
T ss_pred EcCceEEEEE-cCCCCCceECcccc-------------------CCCCCceEEEEECCCceEEEe-ccceEEEEC-CCCC
Confidence 6666643322 22222222211100 001111223333333333333 566655443 2222
Q ss_pred eEEEc---------c-----------cCccCeEEEEEcCCCeEEEEeCCCeEE-EEecccccCcceeEEEEEecccccCe
Q 046226 228 CIETI---------Q-----------AHSEPINALVVADDGVLYSASDDATVR-VWRRYFYSENQLHTLILTLTAKYSPV 286 (434)
Q Consensus 228 ~~~~~---------~-----------~~~~~v~~~~~~~~~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v 286 (434)
.-... . ...+....+...+++.++..+..|.+. -||-- ....... .......+
T Consensus 210 tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G----~~~W~~~--~~~~~~~l 283 (398)
T PLN00033 210 NWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPG----QPYWQPH--NRASARRI 283 (398)
T ss_pred CceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecCCC----CcceEEe--cCCCccce
Confidence 21111 0 001223345556677444444545433 34311 1111211 12234568
Q ss_pred EEEEEecCCCEEEEEcCCCeEEEEEcCcccccc--cccC-cccCcccceEEEEee-CCEEEEecCCCcEEEEeccCCCce
Q 046226 287 KTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQL--QYGG-ALQGHTHAVMCLASV-ANYVISGSADSTSRVWAREQDGRH 362 (434)
Q Consensus 287 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-~~~~~~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 362 (434)
..+.+.+++..++++ .+|.+..-+ ....... .+.. ........+..+.+. .+.++.++.+|.+.... ..++.+
T Consensus 284 ~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW 360 (398)
T PLN00033 284 QNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSW 360 (398)
T ss_pred eeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcce
Confidence 889999998887766 456554432 1111000 1110 011112346777764 44666677788776664 444443
Q ss_pred eeEEEeeccccceeEEEEeecccCCCCCCcccEEEEeecCCeEEEE
Q 046226 363 TMLAVLVGHRGPIRCAIAFLGRFGEETEDEYCTICTGSLDGVLKMW 408 (434)
Q Consensus 363 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~v~iw 408 (434)
+....-..-....+.+.|.++ + .....+.+|.|.-|
T Consensus 361 ~~~~~~~~~~~~ly~v~f~~~---------~-~g~~~G~~G~il~~ 396 (398)
T PLN00033 361 KRDKGADNIAANLYSVKFFDD---------K-KGFVLGNDGVLLRY 396 (398)
T ss_pred eEccccCCCCcceeEEEEcCC---------C-ceEEEeCCcEEEEe
Confidence 443322233456788888765 3 35555678887655
No 497
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.70 E-value=11 Score=34.73 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=88.9
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCcEEEEEcCCCeeE-EEcccC-cc----CeE-EEEEcCCC-eEEEEeCCCeEEEE-e
Q 046226 193 HMGPITSIAINVSDDTLYSASLDKTIKVWRIRDSKCI-ETIQAH-SE----PIN-ALVVADDG-VLYSASDDATVRVW-R 263 (434)
Q Consensus 193 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~-~~----~v~-~~~~~~~~-~l~s~~~dg~i~iw-d 263 (434)
-...|..+-..||++.++.-+. .++.++++.+.... +++-.. .+ .|+ .+..-..+ -++.+..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence 4456777888999999988775 67889988654321 111111 11 122 12222344 68888899998887 4
Q ss_pred cccccCcceeEEEEEecccccCeEEEEEecCCCEEEEEcCCCeEEEEEcCcccccccccCcccCcccceEEEEeeCCEEE
Q 046226 264 RYFYSENQLHTLILTLTAKYSPVKTLTLTLDDGLLYGGCTDGYIHYWHKGWFSAQLQYGGALQGHTHAVMCLASVANYVI 343 (434)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 343 (434)
.+.... .....+..+.-...++..+.-..+.+-+++-+..|++.++.-...... -. ... .....+..++..+++++
T Consensus 298 vr~~~~-p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~-~~~-~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 298 VRRDGQ-PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LF-ERA-YQAPQLVAMSPNQAYLL 373 (733)
T ss_pred eecCCC-CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-eh-hhh-hcCcceeeeCcccchhe
Confidence 442111 112222222222233433433334556777788888888764322111 11 111 12234556666777877
Q ss_pred EecCCCcEEEEeccCC
Q 046226 344 SGSADSTSRVWAREQD 359 (434)
Q Consensus 344 s~~~dg~i~iwd~~~~ 359 (434)
+-. .|.++++.+++.
T Consensus 374 ~e~-~gki~~~~l~Nr 388 (733)
T COG4590 374 SED-QGKIRLAQLENR 388 (733)
T ss_pred eec-CCceEEEEecCC
Confidence 653 578999998875
No 498
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=80.26 E-value=21 Score=30.47 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=49.9
Q ss_pred eccccEEEEEE------c---CCEEEEEeCCCeEEEecCCCceeEeeccCCCccEEEE---EEe-CC-EEEEEEcCCeEE
Q 046226 90 KKDGQILCIAV------G---NGFIYTGSDSNVIRIWKQPEFTECGRLKAKTSMVVAM---EVS-HD-RVYAAYGDGKIR 155 (434)
Q Consensus 90 ~h~~~v~~~~~------~---~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l---~~~-~~-~l~~~s~dg~i~ 155 (434)
.+...|+||+- + -..|+.|..+|.|.|.|.+....+..++-..-++.-. .|. -| ++++++.||.|.
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEE
Confidence 35678899887 1 2479999999999999998888777776554444211 233 34 789999999987
Q ss_pred Ee
Q 046226 156 VW 157 (434)
Q Consensus 156 vw 157 (434)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
No 499
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.10 E-value=23 Score=26.71 Aligned_cols=105 Identities=9% Similarity=0.089 Sum_probs=62.8
Q ss_pred CCEEEEEeCCCeEEEecCCCce--------eEeeccCCCccEEEEEEeC-------CEEEEEEcCCeEEEeecCCCCCce
Q 046226 102 NGFIYTGSDSNVIRIWKQPEFT--------ECGRLKAKTSMVVAMEVSH-------DRVYAAYGDGKIRVWRSTWDNGVK 166 (434)
Q Consensus 102 ~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~l~~~~-------~~l~~~s~dg~i~vwd~~~~~~~~ 166 (434)
...|+.++..|.|.|++..... .+..+. -...|++|+-.+ |.|+.|+ ...+..||+..+..+.
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~F 87 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLF 87 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhh
Confidence 3467888888999999865322 222222 234566665432 2555555 5568999998765544
Q ss_pred eeEeeeccCCCCceeEEEeccccccCcCCCeEEEEEec----CCCEEEEEecCCcEEEEEcCCCeeEEEc
Q 046226 167 HVKLATIPKTGGAVRNLIVGKDKMMKHMGPITSIAINV----SDDTLYSASLDKTIKVWRIRDSKCIETI 232 (434)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 232 (434)
.. .-.+.|+++.+-. +..++++|+ +..|.-+|.+..+..++.
T Consensus 88 yk-----------------------e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 88 YK-----------------------EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hh-----------------------hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 33 2445677776642 234555554 677888887665555443
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.05 E-value=36 Score=35.89 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.6
Q ss_pred ecCCCEEEEEcCCCeEEEEEcCcc
Q 046226 292 TLDDGLLYGGCTDGYIHYWHKGWF 315 (434)
Q Consensus 292 ~~~~~~l~~~~~dg~i~i~d~~~~ 315 (434)
..++..++++..||.+..||....
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCC
Confidence 678999999999999999998764
Done!