BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046227
         (86 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
          Protease Cms1ms2 In Complex With E-64
          Length = 213

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 12 SVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKV 48
          S+ W    + T +  Q     CWTF S AA    NK+
Sbjct: 4  SIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKI 40


>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
          Benzyloxycarbonyl-leucine-valine- Glycine-methylene
          Covalently Bound To Cysteine 25
          Length = 216

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 11 DSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENM 53
          +SV W A  + T +  Q     CW F + A     NK+   N+
Sbjct: 3  ESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNL 45


>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
 pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
          Length = 521

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 15  WMANNSATLLSPQSDGSHCWTFFSTAAY-GKGNKVPLENMPTATASKVKTGMLE 67
           W A  +ATL    S  S  W   S  +Y GK N VP     TATA+  +  +++
Sbjct: 372 WTAAQAATLYRHLSADSQVWGEVSLYSYGGKVNSVP----ETATATAQRDSIIK 421


>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
          Proline Specificity From Ginger Rhizome, Zingiber
          Officinale
 pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
          Proline Specificity From Ginger Rhizome, Zingiber
          Officinale
 pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
          Proline Specificity From Ginger Rhizome, Zingiber
          Officinale
 pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
          Proline Specificity From Ginger Rhizome, Zingiber
          Officinale
          Length = 221

 Score = 25.0 bits (53), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 11/51 (21%), Positives = 23/51 (45%)

Query: 11 DSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKV 61
          DS+ W  N +   +  Q     CW F + AA    N++   ++ + +  ++
Sbjct: 5  DSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQL 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.128    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,543,525
Number of Sequences: 62578
Number of extensions: 84365
Number of successful extensions: 197
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 11
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)