BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046227
         (86 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5YCC7|TMC3_CHICK Transmembrane channel-like protein 3 OS=Gallus gallus GN=Tmc3 PE=2
           SV=1
          Length = 1138

 Score = 29.6 bits (65), Expect = 6.5,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 16  MANNSATLLSPQSDGSH--CWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLE 67
           MA NS   L+  SD ++  CW  F    Y  GN    E+   A  + ++  +LE
Sbjct: 257 MAKNSRMSLASASDENYTFCWRLFCAWDYLIGNPEAAESKAAAIVNSIREAILE 310


>sp|Q9STL5|CEP3_ARATH KDEL-tailed cysteine endopeptidase CEP3 OS=Arabidopsis thaliana
           GN=CEP3 PE=2 SV=1
          Length = 364

 Score = 29.3 bits (64), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 12  SVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKV 48
           SV W    + T +  Q D   CW F + AA    NK+
Sbjct: 129 SVDWREKGAVTEVKNQQDCGSCWAFSTVAAVEGINKI 165


>sp|Q7Z5M5|TMC3_HUMAN Transmembrane channel-like protein 3 OS=Homo sapiens GN=TMC3 PE=2
           SV=3
          Length = 1100

 Score = 29.3 bits (64), Expect = 8.5,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 16  MANNSATLLSPQSDGSH--CWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLE 67
           MA NS T L+  S+ ++  CW  F    Y  GN    E+   A  + ++  +LE
Sbjct: 249 MAKNSRTSLASASNENYTFCWRVFCAWDYLIGNPEAAESKTAAIVNSIREAILE 302


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.128    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,481,521
Number of Sequences: 539616
Number of extensions: 1041796
Number of successful extensions: 2495
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2492
Number of HSP's gapped (non-prelim): 6
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)