Query 046227
Match_columns 86
No_of_seqs 106 out of 135
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 09:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.4 2E-13 4.2E-18 104.6 6.1 64 2-75 203-266 (331)
2 TIGR00562 proto_IX_ox protopor 91.0 0.94 2E-05 34.9 6.3 57 12-76 334-390 (462)
3 TIGR03467 HpnE squalene-associ 81.0 8.1 0.00018 28.8 6.6 51 12-76 300-350 (419)
4 PLN02576 protoporphyrinogen ox 74.2 14 0.00031 28.8 6.4 55 12-76 358-414 (496)
5 PLN02328 lysine-specific histo 66.8 32 0.00068 30.1 7.4 67 2-75 522-596 (808)
6 PLN02529 lysine-specific histo 63.5 42 0.00091 28.9 7.4 47 31-84 479-525 (738)
7 PRK11883 protoporphyrinogen ox 60.8 40 0.00087 25.5 6.3 57 13-76 327-383 (451)
8 PF01593 Amino_oxidase: Flavin 58.6 62 0.0013 23.3 6.7 54 12-75 320-373 (450)
9 PRK02289 4-oxalocrotonate taut 54.6 16 0.00034 21.0 2.5 27 54-80 13-39 (60)
10 PF14719 PID_2: Phosphotyrosin 50.1 59 0.0013 23.5 5.4 47 10-73 77-123 (182)
11 TIGR00013 taut 4-oxalocrotonat 48.3 23 0.00049 20.0 2.5 26 55-80 14-39 (63)
12 cd01269 PLX Pollux (PLX) Phosp 42.4 67 0.0015 22.2 4.4 45 9-70 82-126 (129)
13 PRK02220 4-oxalocrotonate taut 40.3 29 0.00063 19.5 2.1 26 55-80 14-39 (61)
14 cd00491 4Oxalocrotonate_Tautom 40.0 37 0.0008 18.6 2.5 26 55-80 13-38 (58)
15 PRK09762 galactosamine-6-phosp 36.1 12 0.00027 27.1 0.1 30 56-85 11-44 (232)
16 PRK00745 4-oxalocrotonate taut 34.9 37 0.00081 19.0 2.0 26 55-80 14-39 (62)
17 PRK12416 protoporphyrinogen ox 33.2 1.2E+02 0.0025 23.5 5.1 46 28-76 346-391 (463)
18 PRK01271 4-oxalocrotonate taut 33.1 46 0.00099 20.6 2.3 26 55-80 15-40 (76)
19 PRK01964 4-oxalocrotonate taut 33.0 44 0.00096 19.1 2.1 26 55-80 14-39 (64)
20 PF01361 Tautomerase: Tautomer 31.1 37 0.0008 19.0 1.6 25 55-79 13-37 (60)
21 KOG3258 Parvulin-like peptidyl 31.0 23 0.0005 24.3 0.7 23 64-86 91-114 (133)
22 KOG4803 Uncharacterized conser 30.8 53 0.0012 27.8 2.9 16 9-24 137-152 (610)
23 PF03511 Fanconi_A: Fanconi an 29.4 70 0.0015 19.6 2.6 28 45-72 19-46 (64)
24 COG0802 Predicted ATPase or ki 28.1 65 0.0014 22.6 2.6 24 62-86 38-61 (149)
25 PLN02268 probable polyamine ox 26.6 2.9E+02 0.0063 21.1 6.2 37 32-75 321-357 (435)
26 PF08921 DUF1904: Domain of un 26.0 56 0.0012 21.5 1.9 27 53-79 9-35 (108)
27 PF01661 Macro: Macro domain; 25.7 58 0.0012 20.0 1.9 34 33-73 56-90 (118)
28 PRK05883 acyl carrier protein; 22.3 1.4E+02 0.003 18.7 3.2 26 55-80 9-34 (91)
29 smart00462 PTB Phosphotyrosine 21.7 2.2E+02 0.0048 17.9 5.5 42 10-73 84-125 (134)
30 PF10480 ICAP-1_inte_bdg: Beta 21.6 1.7E+02 0.0037 21.7 3.9 33 28-74 164-196 (200)
31 cd02907 Macro_Af1521_BAL_like 21.4 1.1E+02 0.0024 20.9 2.8 33 33-72 75-108 (175)
32 PF09951 DUF2185: Protein of u 21.1 1.4E+02 0.003 19.0 3.0 32 8-45 10-44 (89)
33 PRK10646 ADP-binding protein; 21.0 1.2E+02 0.0025 21.2 2.8 24 62-86 41-64 (153)
34 PRK12358 putative 6-phosphoglu 20.8 34 0.00075 24.8 0.1 31 55-85 10-44 (239)
35 PTZ00397 macrophage migration 20.5 1.2E+02 0.0025 19.4 2.6 25 56-80 72-96 (116)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.43 E-value=2e-13 Score=104.64 Aligned_cols=64 Identities=11% Similarity=0.296 Sum_probs=56.4
Q ss_pred cccceecCCCceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCC
Q 046227 2 YERAFIRGVDSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWP 75 (86)
Q Consensus 2 ~~gafv~~~~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~ 75 (86)
+.|.||.+++ |.||+||.+|||+ -...+.||+|++|+||++|+ +.+.|+|+..|..+|+++.|.
T Consensus 203 ~~G~~vdg~~-laWla~d~sK~g~--~p~~~~~vvqasp~wSr~h~-------~~~~e~~i~~l~aA~~~~~~~ 266 (331)
T COG3380 203 WPGNFVDGHP-LAWLARDASKKGH--VPDGEIWVVQASPDWSREHL-------DHPAEQVIVALRAAAQELDGD 266 (331)
T ss_pred CCCcccCCCe-eeeeeccccCCCC--CCcCceEEEEeCchHHHHhh-------cCCHHHHHHHHHHhhhhccCC
Confidence 5688999996 9999999999992 33578999999999999999 999999999999999987663
No 2
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=90.97 E-value=0.94 Score=34.86 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=43.2
Q ss_pred ceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 12 SVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 12 ~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
.+.|+.+++.+|+.. .++...++++.+..++..+. +.+.+++.+.++++|++.+|++
T Consensus 334 ~~~~i~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~~-------~~~~ee~~~~v~~~L~~~~gi~ 390 (462)
T TIGR00562 334 ILGCIFTSKLFPNRA-PPGKTLLTAYIGGATDESIV-------DLSENEIINIVLRDLKKVLNIN 390 (462)
T ss_pred eEEEEEEccccCCcC-CCCcEEEEEEeCCCCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence 489999888888721 12344677788777776665 6778999999999999988865
No 3
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=81.05 E-value=8.1 Score=28.75 Aligned_cols=51 Identities=4% Similarity=-0.001 Sum_probs=37.6
Q ss_pred ceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 12 SVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 12 ~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
...|+.+++.+++ +.+..+++++... ++. +.+.+++.+.+++.+++++|..
T Consensus 300 ~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~-------~~~~e~~~~~~l~~l~~~~~~~ 350 (419)
T TIGR03467 300 LAQWLFDRGQLAG---EPGYLAVVISAAR----DLV-------DLPREELADRIVAELRRAFPRV 350 (419)
T ss_pred ceeEEEECCcCCC---CCCEEEEEEecch----hhc-------cCCHHHHHHHHHHHHHHhcCcc
Confidence 4789999888876 5555567776533 333 5567999999999999988754
No 4
>PLN02576 protoporphyrinogen oxidase
Probab=74.19 E-value=14 Score=28.81 Aligned_cols=55 Identities=5% Similarity=-0.026 Sum_probs=39.9
Q ss_pred ceeEEEeCCCCCCCCCCCC--CceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 12 SVSWMANNSATLLSPQSDG--SHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 12 ~LsWia~nssKpg~~~r~~--~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
.|.|+.++..+|+ +.. .-.++++...+.+..+. +.+.+++.+.+++.|.+++|..
T Consensus 358 ~lg~~~~s~~~p~---~~~~~~~~l~~~~~~~~~~~~~-------~~s~ee~~~~~~~~L~~~~g~~ 414 (496)
T PLN02576 358 TLGTIYSSSLFPD---RAPEGRVLLLNYIGGSRNTGIA-------SASEEELVEAVDRDLRKLLLKP 414 (496)
T ss_pred eEEEEeecCcCCC---CCCCCCEEEEEEECCCCCcccc-------cCCHHHHHHHHHHHHHHHhCCC
Confidence 4778998888887 432 22455566655555554 6677999999999999998864
No 5
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=66.81 E-value=32 Score=30.08 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=44.1
Q ss_pred cccceecCC-CceeEEEeCCCCCCCC-------CCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 046227 2 YERAFIRGV-DSVSWMANNSATLLSP-------QSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVA 73 (86)
Q Consensus 2 ~~gafv~~~-~~LsWia~nssKpg~~-------~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~l 73 (86)
|+..|.... +.+.++..+.++.|.- ...+...++.+.+.+++.... ..+.+++.+.+++.+++++
T Consensus 522 F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~vLvafv~G~~A~~~e-------~lsdeE~v~~vL~~Lr~if 594 (808)
T PLN02328 522 FPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGPLLIALVAGDAAVKFE-------TLSPVESVKRVLQILRGIF 594 (808)
T ss_pred eCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCcEEEEEecChhhHHHh-------cCCHHHHHHHHHHHHHHHh
Confidence 334444322 2356676666665510 013456899999999988865 4566888899999999888
Q ss_pred CC
Q 046227 74 WP 75 (86)
Q Consensus 74 g~ 75 (86)
|.
T Consensus 595 gp 596 (808)
T PLN02328 595 HP 596 (808)
T ss_pred Cc
Confidence 74
No 6
>PLN02529 lysine-specific histone demethylase 1
Probab=63.45 E-value=42 Score=28.95 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=34.6
Q ss_pred CceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 046227 31 SHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPADRSCRKPI 84 (86)
Q Consensus 31 ~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~~~~~~~p~ 84 (86)
..+++.+...+++.... ..+.+++.+.+++.+++++|.....+|.|+
T Consensus 479 gpvLvafv~G~~A~~le-------~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi 525 (738)
T PLN02529 479 GPALVALVAGEAAQRFE-------NTDPSTLLHRVLSVLRGIYNPKGINVPDPI 525 (738)
T ss_pred CCEEEEEECchhhHHHh-------cCCHHHHHHHHHHHHHHHhCccccccCCce
Confidence 45889998888887765 566789999999999998874322345553
No 7
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=60.84 E-value=40 Score=25.54 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=39.1
Q ss_pred eeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 13 VSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 13 LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+.++..++.+... .......++.++...|+...+. +.+.+++.+.+++.+++.+|.+
T Consensus 327 ~~~~~~~s~~~~~-~~p~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~g~~ 383 (451)
T PRK11883 327 ITACTWTSKKWPH-TTPEGKVLLRLYVGRPGDEAVV------DATDEELVAFVLADLSKVMGIT 383 (451)
T ss_pred EEEEEeEcCcCCC-CCCCCcEEEEEecCCCCCchhc------cCCHHHHHHHHHHHHHHHhCCC
Confidence 5677677776431 1122346888888877655431 4567999999999999998864
No 8
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=58.64 E-value=62 Score=23.30 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=40.0
Q ss_pred ceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCC
Q 046227 12 SVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWP 75 (86)
Q Consensus 12 ~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~ 75 (86)
.+.++...+.+++ +.+...++.-....++.... ..+.+++.+.+++.++++++.
T Consensus 320 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~-------~~~~e~~~~~~~~~L~~~~~~ 373 (450)
T PF01593_consen 320 PIGYVSDPSKFPG---RPGGGVLTSYVGGPDAPEWD-------DLSDEEILERVLDDLRKILPG 373 (450)
T ss_dssp SEEEEEEECCTTS---CTTSEEEEEEEEHHHHHHHT-------TSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccCcc---cccCCcceeeeeccccchhc-------ccchhhhHHHHHHHhhhcccc
Confidence 4788888888887 44444566666666665554 667899999999999999874
No 9
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=54.65 E-value=16 Score=21.02 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 54 PTATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 54 p~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.++...++++.+.+++.+.+|.+..++
T Consensus 13 s~EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 13 SQEQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcceE
Confidence 456678999999999999999987664
No 10
>PF14719 PID_2: Phosphotyrosine interaction domain (PTB/PID)
Probab=50.06 E-value=59 Score=23.46 Aligned_cols=47 Identities=9% Similarity=0.235 Sum_probs=30.6
Q ss_pred CCceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 046227 10 VDSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVA 73 (86)
Q Consensus 10 ~~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~l 73 (86)
..+.+||.+...|.- ..--+|=.+..+- ++.+.+++..|.++|..++
T Consensus 77 PrVFawIyrhe~~~~---~~~L~CHAvlC~k--------------~~~Akama~~L~~af~~Af 123 (182)
T PF14719_consen 77 PRVFAWIYRHEGKKL---KVELRCHAVLCSK--------------EEKAKAMARALYQAFRSAF 123 (182)
T ss_pred CceEEEEEEcccCCC---cccEEEEEEEECC--------------HHHHHHHHHHHHHHHHHHH
Confidence 346899998877654 4456776666543 4455677777777776554
No 11
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=48.25 E-value=23 Score=20.01 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++...|.+++.+.+|.+..++
T Consensus 14 ~eqK~~l~~~it~~l~~~lg~~~~~v 39 (63)
T TIGR00013 14 DEQKRQLIEGVTEAMAETLGANLESI 39 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccE
Confidence 45668999999999999999987654
No 12
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=42.41 E-value=67 Score=22.24 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=31.6
Q ss_pred CCCceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHH
Q 046227 9 GVDSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVG 70 (86)
Q Consensus 9 ~~~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~ 70 (86)
+-+-...|++++...+ ....-|.|++... ++-+++|.-.|-++|.
T Consensus 82 ~~dhFgFIcrEs~~~~---~~~f~CyVFqc~S--------------e~la~eI~lti~QAF~ 126 (129)
T cd01269 82 HVDHFGFICRESPEPG---LSQYICYVFQCAD--------------ESLVDEVMLTLKQAFS 126 (129)
T ss_pred CcceEEEEeccCCCCC---cceEEEEEEEcCC--------------HHHHHHHHHHHHHHHh
Confidence 3345889999999887 5555699998654 4445666666666665
No 13
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=40.26 E-value=29 Score=19.47 Aligned_cols=26 Identities=4% Similarity=-0.040 Sum_probs=20.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++...+.+++.+.+|.+...+
T Consensus 14 ~eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 14 EEQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhE
Confidence 44557899999999999999886654
No 14
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=39.97 E-value=37 Score=18.64 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.|.+++.+.+|.+...+
T Consensus 13 ~eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 13 DEQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 45667899999999999999886653
No 15
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=36.10 E-value=12 Score=27.15 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHHHHH----hhCCCCCCCCCCcc
Q 046227 56 ATASKVKTGMLEGVGA----VAWPADRSCRKPIY 85 (86)
Q Consensus 56 ~~~e~V~~~Ll~a~~~----~lg~~~~~~~~p~~ 85 (86)
+..+.++..+.+.+.+ .++++.|+.|+|+|
T Consensus 11 ~~~~~~a~~i~~~i~~~~~~~l~lsgGstP~~~y 44 (232)
T PRK09762 11 ALSERASEYLLAVIRSKPDAVICLATGATPLLTY 44 (232)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 4456666677777665 46889999999887
No 16
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=34.91 E-value=37 Score=19.05 Aligned_cols=26 Identities=8% Similarity=-0.116 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.+.+++.+.+|.+...+
T Consensus 14 ~eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 14 VEQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHE
Confidence 44568999999999999999876543
No 17
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=33.18 E-value=1.2e+02 Score=23.54 Aligned_cols=46 Identities=7% Similarity=-0.106 Sum_probs=29.4
Q ss_pred CCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 28 SDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 28 r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+.+...+++...-.++..+. +.+.+.+.|++.+.+++++++.+|+.
T Consensus 346 ~~~~~~~l~~~~~~~~~~~~---~~~~~~~dee~~~~~~~~L~~~lG~~ 391 (463)
T PRK12416 346 TSGKQKLLVRMFYKSTNPVY---ETIKNYSEEELVRVALYDIEKSLGIK 391 (463)
T ss_pred cCCCCeEEEEEEeCCCCCCc---hhhhcCCHHHHHHHHHHHHHHHhCCC
Confidence 33445678876554432211 11114567999999999999999975
No 18
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=33.13 E-value=46 Score=20.60 Aligned_cols=26 Identities=8% Similarity=-0.001 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
++...++++++.+++.+.||.++.++
T Consensus 15 ~EqK~~La~~iT~a~~~~lg~~~e~v 40 (76)
T PRK01271 15 EEQKAALAADITDVIIRHLNSKDSSI 40 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceE
Confidence 55678999999999999999987764
No 19
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=32.97 E-value=44 Score=19.06 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.+.+++.+.+|.+...+
T Consensus 14 ~eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 14 EEKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhE
Confidence 44568999999999999999987654
No 20
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=31.13 E-value=37 Score=19.05 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=19.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
.+...++++.+.+++.+.+|.+...
T Consensus 13 ~e~K~~l~~~it~~~~~~lg~~~~~ 37 (60)
T PF01361_consen 13 AEQKRELAEAITDAVVEVLGIPPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCe
Confidence 4456889999999999999987544
No 21
>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.98 E-value=23 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=17.9
Q ss_pred HHHHHHHHh-hCCCCCCCCCCccC
Q 046227 64 GMLEGVGAV-AWPADRSCRKPIYT 86 (86)
Q Consensus 64 ~Ll~a~~~~-lg~~~~~~~~p~~~ 86 (86)
.|..-|+++ +.++..++.+|+||
T Consensus 91 ~MvGPFQdaAFalpvs~~~~pv~T 114 (133)
T KOG3258|consen 91 SMVGPFQDAAFALPVSTVDKPVYT 114 (133)
T ss_pred ccccchhhhhhcccccccCCcccc
Confidence 466667755 58888899999997
No 22
>KOG4803 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.77 E-value=53 Score=27.82 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=13.0
Q ss_pred CCCceeEEEeCCCCCC
Q 046227 9 GVDSVSWMANNSATLL 24 (86)
Q Consensus 9 ~~~~LsWia~nssKpg 24 (86)
++++|.|+-||+|-|.
T Consensus 137 ~g~~l~wvrcd~Sd~e 152 (610)
T KOG4803|consen 137 AGPPLVWVRCDSSDPE 152 (610)
T ss_pred cCCceeEEEecCCCCC
Confidence 3445899999999994
No 23
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=29.37 E-value=70 Score=19.61 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=23.0
Q ss_pred hcCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 046227 45 GNKVPLENMPTATASKVKTGMLEGVGAV 72 (86)
Q Consensus 45 ~hl~pqe~~p~~~~e~V~~~Ll~a~~~~ 72 (86)
.|+.|+|..+...+=+|..++++.+++-
T Consensus 19 s~l~p~~~~d~~kaldiCaeIL~cLE~R 46 (64)
T PF03511_consen 19 SYLAPKEGADSLKALDICAEILGCLEKR 46 (64)
T ss_pred HhcCcccccccHHHHHHHHHHHHHHHhC
Confidence 4788888877777889999999999863
No 24
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=28.09 E-value=65 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCccC
Q 046227 62 KTGMLEGVGAVAWPADRSCRKPIYT 86 (86)
Q Consensus 62 ~~~Ll~a~~~~lg~~~~~~~~p~~~ 86 (86)
...+.+++.+.+|+ .+.+..|.||
T Consensus 38 KTtf~rgi~~~Lg~-~~~V~SPTFt 61 (149)
T COG0802 38 KTTLVRGIAKGLGV-DGNVKSPTFT 61 (149)
T ss_pred hHHHHHHHHHHcCC-CCcccCCCee
Confidence 45677888888887 6778899997
No 25
>PLN02268 probable polyamine oxidase
Probab=26.56 E-value=2.9e+02 Score=21.10 Aligned_cols=37 Identities=0% Similarity=-0.009 Sum_probs=29.8
Q ss_pred ceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCC
Q 046227 32 HCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWP 75 (86)
Q Consensus 32 e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~ 75 (86)
..++.+.+..+++... +.+.+++.+.+++.|+++++.
T Consensus 321 ~~l~~~~~g~~a~~~~-------~~~~~e~~~~v~~~L~~~~~~ 357 (435)
T PLN02268 321 PVLVYMPAGRLARDIE-------KLSDEAAANFAMSQLKKMLPD 357 (435)
T ss_pred CEEEEEeccHHHHHHH-------hCCHHHHHHHHHHHHHHHcCC
Confidence 4788888888887765 567789999999999998864
No 26
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=25.98 E-value=56 Score=21.55 Aligned_cols=27 Identities=0% Similarity=0.153 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 53 MPTATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 53 ~p~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
+++++..++...|++.|+++++.+...
T Consensus 9 i~~e~v~~~S~~LideLa~i~~~p~e~ 35 (108)
T PF08921_consen 9 IEEEQVQELSKELIDELAEICGCPREN 35 (108)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHT--GGG
T ss_pred CCHHHHHHHhHHHHHHHHHHHCCCcce
Confidence 456788899999999999999886443
No 27
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=25.65 E-value=58 Score=20.01 Aligned_cols=34 Identities=3% Similarity=0.141 Sum_probs=22.3
Q ss_pred eEEEEe-ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 046227 33 CWTFFS-TAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVA 73 (86)
Q Consensus 33 ~Wvlhs-T~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~l 73 (86)
.||+|+ .|.|..... ..+.+.+...+-..|+.+.
T Consensus 56 ~~Iih~v~P~~~~~~~-------~~~~~~L~~~~~~~l~~a~ 90 (118)
T PF01661_consen 56 KYIIHAVGPTYNSPGE-------KNSYEALESAYRNALQKAE 90 (118)
T ss_dssp SEEEEEEEEETTTSTS-------TTHHHHHHHHHHHHHHHHH
T ss_pred cceEEEecceeccccc-------cccHHHHHHHHHHHHHHHH
Confidence 599999 578875544 4455666666666666544
No 28
>PRK05883 acyl carrier protein; Validated
Probab=22.29 E-value=1.4e+02 Score=18.66 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=22.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
..+.++|.+.|.+-+++.+|++...+
T Consensus 9 ~~~~~~I~~~l~~iia~~l~v~~~~I 34 (91)
T PRK05883 9 TSSPSTVSATLLSILRDDLNVDLTRV 34 (91)
T ss_pred CCCHHHHHHHHHHHHHHHhCCChhhC
Confidence 34778999999999999999887665
No 29
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=21.66 E-value=2.2e+02 Score=17.91 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 046227 10 VDSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVA 73 (86)
Q Consensus 10 ~~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~l 73 (86)
...+.||+++...- ...|.|+++... +++++..|-++|+.+.
T Consensus 84 ~~~F~fI~~~~~~~------~~~CHvF~c~~~----------------a~~i~~~i~~aF~~a~ 125 (134)
T smart00462 84 LDVFGYIARDPGSS------RFACHVFRCEKA----------------AEDIALAIGQAFQLAY 125 (134)
T ss_pred CcEEEEEeeCCCCC------eEEEEEEEcCch----------------HHHHHHHHHHHHHHHH
Confidence 34578888875532 257999998752 2577788888887654
No 30
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=21.59 E-value=1.7e+02 Score=21.67 Aligned_cols=33 Identities=9% Similarity=0.212 Sum_probs=26.0
Q ss_pred CCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhC
Q 046227 28 SDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAW 74 (86)
Q Consensus 28 r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg 74 (86)
+..-.+||+|.+. .+.+++|+..|-++|..++.
T Consensus 164 ~e~y~l~v~Qcss--------------~~qA~~ICk~l~~aF~~v~t 196 (200)
T PF10480_consen 164 QEEYQLWVYQCSS--------------DEQAQEICKVLGQAFDSVLT 196 (200)
T ss_pred cceEEEEEEEcCC--------------HHHHHHHHHHHHHHHHHhhc
Confidence 3456799999986 55778999999999987654
No 31
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=21.44 E-value=1.1e+02 Score=20.92 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=18.6
Q ss_pred eEEEEe-ChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHh
Q 046227 33 CWTFFS-TAAYGKGNKVPLENMPTATASKVKTGMLEGVGAV 72 (86)
Q Consensus 33 ~Wvlhs-T~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~ 72 (86)
.||+|+ +|.|..... ....+.+...+...|+.+
T Consensus 75 k~IiH~v~P~~~~~~~-------~~~~~~L~~~~~~~L~~a 108 (175)
T cd02907 75 KYVIHAVGPRWSGGEA-------EECVEKLKKAILNSLRKA 108 (175)
T ss_pred CEEEEeCCCcCCCCCC-------chHHHHHHHHHHHHHHHH
Confidence 499998 577754332 223445555555555544
No 32
>PF09951 DUF2185: Protein of unknown function (DUF2185); InterPro: IPR018689 This domain has no known function.
Probab=21.11 E-value=1.4e+02 Score=18.99 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred cCCCceeEEEeCCCCCCCCCCCCCceEEEEeCh---hhhhh
Q 046227 8 RGVDSVSWMANNSATLLSPQSDGSHCWTFFSTA---AYGKG 45 (86)
Q Consensus 8 ~~~~~LsWia~nssKpg~~~r~~~e~WvlhsT~---~ws~~ 45 (86)
++. .|.||-|+ +|. .....-|.+.|.- +|...
T Consensus 10 ~~~-~v~~~yRE--~p~---~~~DSGWrffsg~EtdeY~~d 44 (89)
T PF09951_consen 10 EGE-PVGYMYRE--EPE---FPNDSGWRFFSGDETDEYLND 44 (89)
T ss_pred CCC-ceEEEEec--CCC---CCCCCceEEEecCCCHHHhCC
Confidence 445 49999999 665 3333459999964 55543
No 33
>PRK10646 ADP-binding protein; Provisional
Probab=20.96 E-value=1.2e+02 Score=21.18 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCccC
Q 046227 62 KTGMLEGVGAVAWPADRSCRKPIYT 86 (86)
Q Consensus 62 ~~~Ll~a~~~~lg~~~~~~~~p~~~ 86 (86)
...+.+++.+.+|.. +.++.|.||
T Consensus 41 KTtf~rgl~~~Lg~~-~~V~SPTFt 64 (153)
T PRK10646 41 KTTFSRGFLQALGHQ-GNVKSPTYT 64 (153)
T ss_pred HHHHHHHHHHHcCCC-CCCCCCCEe
Confidence 355677777777875 458899886
No 34
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=20.83 E-value=34 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHHH----hhCCCCCCCCCCcc
Q 046227 55 TATASKVKTGMLEGVGA----VAWPADRSCRKPIY 85 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~----~lg~~~~~~~~p~~ 85 (86)
++..+.+++.+++.+.+ .++++.|+.|+++|
T Consensus 10 ~e~~~~~a~~i~~~i~~~~~~~l~lsgG~tp~~~y 44 (239)
T PRK12358 10 EEMSRVAAHHLLGYMSKTKRVNLAITAGSTPKGMY 44 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHH
Confidence 34456666777776665 45888888888887
No 35
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.53 E-value=1.2e+02 Score=19.40 Aligned_cols=25 Identities=4% Similarity=0.009 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 56 ATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 56 ~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
+...+..+.|.+.+++.||+++..+
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~rv 96 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSERV 96 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 3447899999999999999987654
Done!