Query 046227
Match_columns 86
No_of_seqs 106 out of 135
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 98.9 1.3E-09 4.4E-14 78.9 6.1 70 2-85 210-282 (342)
2 1yvv_A Amine oxidase, flavin-c 98.6 2.4E-07 8.4E-12 65.8 8.1 63 3-76 201-264 (336)
3 3nks_A Protoporphyrinogen oxid 85.5 1.3 4.3E-05 32.6 4.9 63 11-76 342-404 (477)
4 2yg5_A Putrescine oxidase; oxi 72.1 9.5 0.00032 27.7 5.9 52 12-75 321-372 (453)
5 3mb2_B 4-oxalocrotonate tautom 63.7 8.7 0.0003 23.2 3.5 25 56-80 16-40 (72)
6 3t58_A Sulfhydryl oxidase 1; o 56.6 0.45 1.5E-05 37.3 -4.0 55 13-71 360-417 (519)
7 2x4k_A 4-oxalocrotonate tautom 56.5 8.1 0.00028 20.4 2.3 25 55-79 16-40 (63)
8 3m20_A 4-oxalocrotonate tautom 50.9 17 0.00059 19.8 3.2 26 55-80 12-37 (62)
9 3ry0_A Putative tautomerase; o 50.6 11 0.00038 20.7 2.3 26 55-80 13-38 (65)
10 1otf_A 4-oxalocrotonate tautom 50.3 12 0.0004 19.9 2.3 25 55-79 13-37 (62)
11 2opa_A Probable tautomerase YW 47.8 14 0.00046 19.6 2.3 26 55-80 13-38 (61)
12 3abf_A 4-oxalocrotonate tautom 46.7 11 0.00039 20.2 1.9 25 55-79 14-38 (64)
13 3mb2_A 4-oxalocrotonate tautom 45.6 12 0.00041 21.1 2.0 25 55-79 14-38 (72)
14 2e1m_C L-glutamate oxidase; L- 45.3 43 0.0015 22.1 5.0 61 4-75 12-73 (181)
15 3mf7_A CIS-3-chloroacrylic aci 44.1 25 0.00086 23.1 3.6 37 33-80 2-39 (149)
16 1gyx_A YDCE, B1461, hypothetic 40.0 17 0.0006 20.6 2.1 26 55-80 14-39 (76)
17 3m21_A Probable tautomerase HP 39.3 19 0.00065 19.9 2.1 25 55-79 16-40 (67)
18 3ej9_A Alpha-subunit of trans- 35.9 25 0.00085 20.1 2.3 26 55-80 14-39 (76)
19 3i6d_A Protoporphyrinogen oxid 34.5 29 0.00099 24.9 2.9 38 32-76 361-398 (470)
20 2ivd_A PPO, PPOX, protoporphyr 33.1 60 0.0021 23.5 4.5 56 13-76 348-404 (478)
21 2dnw_A Acyl carrier protein; A 29.5 76 0.0026 18.5 3.9 28 53-80 8-35 (99)
22 4i4d_A Peptide synthetase NRPS 27.2 93 0.0032 17.8 3.9 29 57-85 13-41 (93)
23 2xcz_A Possible ATLS1-like lig 26.9 71 0.0024 19.1 3.4 25 54-79 13-37 (115)
24 3ej9_B Beta-subunit of trans-3 26.3 46 0.0016 19.9 2.3 28 53-80 11-38 (70)
25 1u9d_A Hypothetical protein VC 25.6 38 0.0013 21.9 2.0 27 53-79 24-50 (122)
26 3lov_A Protoporphyrinogen oxid 24.6 96 0.0033 22.5 4.3 22 55-76 374-395 (475)
27 3mlc_A FG41 malonate semialdeh 24.2 85 0.0029 19.9 3.5 28 53-80 11-38 (136)
28 2aal_A Malonate semialdehyde d 24.1 72 0.0025 19.6 3.1 25 55-79 14-38 (131)
29 1vl1_A 6PGL, 6-phosphogluconol 23.8 18 0.00063 25.2 0.2 29 57-85 25-61 (232)
30 2afd_A Protein ASL1650; twiste 21.2 1.1E+02 0.0039 16.6 4.3 26 54-79 8-33 (88)
31 3so6_A LDL receptor adaptor pr 21.0 1.5E+02 0.0052 18.1 5.1 43 11-73 85-127 (137)
32 3e21_A HFAF1, FAS-associated f 20.7 81 0.0028 16.9 2.5 16 62-77 5-20 (45)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.94 E-value=1.3e-09 Score=78.88 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=57.7
Q ss_pred cccceecCCCceeEEEeCCCCCCCCCCC---CCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCC
Q 046227 2 YERAFIRGVDSVSWMANNSATLLSPQSD---GSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPADR 78 (86)
Q Consensus 2 ~~gafv~~~~~LsWia~nssKpg~~~r~---~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~~~ 78 (86)
+.|.++.+++.|.|+++|++||+ |. +..+||+|++.+|+++|+ +.+.|++.+.++++|++++|.
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~k~~---r~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~g~--- 276 (342)
T 3qj4_A 210 WAGQYITSNPCIRFVSIDNKKRN---IESSEIGPSLVIHTTVPFGVTYL-------EHSIEDVQELVFQQLENILPG--- 276 (342)
T ss_dssp CSEEECSSCSSEEEEEEHHHHTT---CCCC-CCCEEEEEECHHHHHHTT-------TSCHHHHHHHHHHHHHHHSCS---
T ss_pred eeeEEccCCcceEEEEccccCCC---CCCCCCCceEEEECCHHHHHHhh-------cCCHHHHHHHHHHHHHHhccC---
Confidence 45777765545999999999998 54 346999999999999998 888999999999999999983
Q ss_pred CCCCCcc
Q 046227 79 SCRKPIY 85 (86)
Q Consensus 79 ~~~~p~~ 85 (86)
.+.|.+
T Consensus 277 -~~~p~~ 282 (342)
T 3qj4_A 277 -LPQPIA 282 (342)
T ss_dssp -CCCCSE
T ss_pred -CCCCce
Confidence 345654
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.57 E-value=2.4e-07 Score=65.76 Aligned_cols=63 Identities=16% Similarity=0.351 Sum_probs=55.0
Q ss_pred ccceecCCCceeEEEeCCCCCCCCCCCCC-ceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 3 ERAFIRGVDSVSWMANNSATLLSPQSDGS-HCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 3 ~gafv~~~~~LsWia~nssKpg~~~r~~~-e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
.+.|+.+.+ +.|+.++++||+ +++. .+||++.+++|+++++ +.+.+++.++|+++|.+.+|..
T Consensus 201 ~~~~~~~~~-~~~l~~~~~~p~---~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~l~~~l~~~lg~~ 264 (336)
T 1yvv_A 201 QGCFVQDSP-LDWLARNRSKPE---RDDTLDTWILHATSQWSRQNL-------DASREQVIEHLHGAFAELIDCT 264 (336)
T ss_dssp CEEEECSSS-EEEEEEGGGSTT---CCCSSEEEEEEECHHHHHHTT-------TSCHHHHHHHHHHHHHTTCSSC
T ss_pred CeEEeCCCc-eeEEEecCcCCC---CCCCCcEEEEEeCHHHHHHHH-------hCCHHHHHHHHHHHHHHHhCCC
Confidence 466777775 999999999998 6654 7999999999999988 7788999999999999999875
No 3
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=85.48 E-value=1.3 Score=32.62 Aligned_cols=63 Identities=6% Similarity=-0.125 Sum_probs=42.5
Q ss_pred CceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 11 DSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 11 ~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
.++.|+.+++..|+..+..+...++++...+|+..+. +..++.+.+++.+.+++.|++++|+.
T Consensus 342 ~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~---~~~~~~~~~~~~~~~~~~L~~~~g~~ 404 (477)
T 3nks_A 342 GVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLE---ASGCVLSQELFQQRAQEAAATQLGLK 404 (477)
T ss_dssp SEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHH---HSSCCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CceEEEEeccccCCCCCCCCceEEEEEECCccccccc---cccCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3578876655556521111445677888899988763 11123467999999999999999874
No 4
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=72.06 E-value=9.5 Score=27.71 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=36.3
Q ss_pred ceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCC
Q 046227 12 SVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWP 75 (86)
Q Consensus 12 ~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~ 75 (86)
.+.|+.+++ +|. +. ..+++.+...++++... +.+.+++.+.+++.+++.+|.
T Consensus 321 ~~~~~~~~~-~~~---~~-~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~l~~L~~~~~~ 372 (453)
T 2yg5_A 321 VVQEVYDNT-NHE---DD-RGTLVAFVSDEKADAMF-------ELSAEERKATILASLARYLGP 372 (453)
T ss_dssp SSCEEEECC-CTT---CS-SEEEEEEEEHHHHHHHH-------HSCHHHHHHHHHHHHHHHHCG
T ss_pred CeEEEEeCC-CCC---CC-CCEEEEEeccHHHHHHh-------cCCHHHHHHHHHHHHHHHhCc
Confidence 367776655 453 21 24788888877776654 446688999999999988764
No 5
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=63.74 E-value=8.7 Score=23.24 Aligned_cols=25 Identities=4% Similarity=-0.182 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 56 ATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 56 ~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
+-..+.++++...|++.+|.+++++
T Consensus 16 EQKralaeE~T~if~evLGcpPgsV 40 (72)
T 3mb2_B 16 TRKQAFAAEASAIFQRVIGTPPGRL 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcE
Confidence 4557899999999999999999997
No 6
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=56.56 E-value=0.45 Score=37.31 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=33.6
Q ss_pred eeEEEeCCCCCCCCCCCCCce--EEE-EeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHH
Q 046227 13 VSWMANNSATLLSPQSDGSHC--WTF-FSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGA 71 (86)
Q Consensus 13 LsWia~nssKpg~~~r~~~e~--Wvl-hsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~ 71 (86)
+.|++|.+|+|+ -.|-.| |+| |+-+.+.-++-..+..- +....++...|..-+..
T Consensus 360 ~~w~~C~gs~~~---~rg~~C~lW~l~Htltv~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~ 417 (519)
T 3t58_A 360 VNWVGCQGSEPH---FRGFPCSLWVLFHFLTVQANRYSEAHPQE-PADGQEVLQAMRSYVQF 417 (519)
T ss_dssp CCCSTTBCSSTT---SBSHHHHHHHHHHHHHHHHHHHHHTSTTS-CCCSCHHHHHHHHHHHH
T ss_pred CCcccCCCCCcc---cCCcCcHHHHHHHHHHccCccCCcccccc-ccchHHHHHHHHHHHHH
Confidence 679999999998 566555 876 88777665543221110 11334566666665554
No 7
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=56.51 E-value=8.1 Score=20.41 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
.+...++.+.+.+++.+.+|.+...
T Consensus 16 ~e~k~~l~~~l~~~l~~~lg~p~~~ 40 (63)
T 2x4k_A 16 DEQLKNLVSEVTDAVEKTTGANRQA 40 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCcCccc
Confidence 3445789999999999999988654
No 8
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=50.91 E-value=17 Score=19.81 Aligned_cols=26 Identities=0% Similarity=-0.110 Sum_probs=21.5
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++++.+.+++.+.+|.+..++
T Consensus 12 ~eqK~~L~~~it~~~~~~lg~~~~~v 37 (62)
T 3m20_A 12 VGKKREFVERLTSVAAEIYGMDRSAI 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceE
Confidence 45568999999999999999987664
No 9
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=50.60 E-value=11 Score=20.66 Aligned_cols=26 Identities=0% Similarity=-0.046 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.+.+++.+.+|.+...+
T Consensus 13 ~eqk~~L~~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 13 PQEVAALGEALTAAAHETLGTPVEAV 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 45568899999999999999986553
No 10
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=50.34 E-value=12 Score=19.92 Aligned_cols=25 Identities=4% Similarity=-0.088 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
.+...++.+.+.+++.+.+|.+...
T Consensus 13 ~e~k~~l~~~i~~~l~~~lg~p~~~ 37 (62)
T 1otf_A 13 DEQKETLIRQVSEAMANSLDAPLER 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCcCccc
Confidence 4455789999999999999988654
No 11
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=47.81 E-value=14 Score=19.64 Aligned_cols=26 Identities=8% Similarity=0.078 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.|.+.+.+.+|.+...+
T Consensus 13 ~eqk~~l~~~i~~~l~~~lg~~~~~v 38 (61)
T 2opa_A 13 DEQKRNLVEKVTEAVKETTGASEEKI 38 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCeE
Confidence 44557899999999999999876543
No 12
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=46.72 E-value=11 Score=20.16 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=19.8
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
.+...++.+.|.+.+.+.+|.+...
T Consensus 14 ~eqk~~l~~~lt~~l~~~lg~~~~~ 38 (64)
T 3abf_A 14 PEKKRELVRRLTEMASRLLGEPYEE 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3445789999999999999987544
No 13
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=45.65 E-value=12 Score=21.06 Aligned_cols=25 Identities=8% Similarity=-0.037 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
.+...++.+.+.+++.+.+|.+...
T Consensus 14 ~eqK~~L~~~it~~l~~~lg~p~~~ 38 (72)
T 3mb2_A 14 TEQKAELARALSAAAAAAFDVPLAE 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc
Confidence 4556899999999999999988654
No 14
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=45.26 E-value=43 Score=22.11 Aligned_cols=61 Identities=10% Similarity=-0.067 Sum_probs=35.2
Q ss_pred cceecCCCceeEEEeCCCCCCCCCCCCC-ceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCC
Q 046227 4 RAFIRGVDSVSWMANNSATLLSPQSDGS-HCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWP 75 (86)
Q Consensus 4 gafv~~~~~LsWia~nssKpg~~~r~~~-e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~ 75 (86)
|++..+.+ |.++...|.-.. .++. ...+.....+.++.-. ..+.+++.+.+++.|++++|.
T Consensus 12 g~~~td~p-i~~i~d~S~~~~---~~g~~~~L~~~~~g~~A~~~~-------~l~~~e~~~~~l~~L~~~~g~ 73 (181)
T 2e1m_C 12 GGSTTDNP-NRFMYYPSHPVP---GTQGGVVLAAYSWSDDAARWD-------SFDDAERYGYALENLQSVHGR 73 (181)
T ss_dssp CEEEESST-TBEEECCSSCCT---TCSCEEEEEEEEEHHHHHHHT-------TSCTTTTHHHHHHHHHHHHCG
T ss_pred eeEecCCC-eEEEEECCCCcC---CCCCCEEEEEEcCChHHHHHH-------cCCHHHHHHHHHHHHHHHhCC
Confidence 46677775 999998876532 1222 2454555556665532 223356666777777776664
No 15
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=44.07 E-value=25 Score=23.09 Aligned_cols=37 Identities=5% Similarity=0.081 Sum_probs=27.5
Q ss_pred eEEEEeC-hhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 33 CWTFFST-AAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 33 ~WvlhsT-~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.|.+|-. ..++.+.| .++++.+.+++.+.+|.|...+
T Consensus 2 ~~~i~~~~~~~t~eqK-----------~aLa~~It~a~~e~~~vP~~~v 39 (149)
T 3mf7_A 2 VYMVYVSQDRLTPSAK-----------HAVAKAITDAHRGLTGTQHFLA 39 (149)
T ss_dssp EEEEEEETTTSCHHHH-----------HHHHHHHHHHHHHTCCTTCCCC
T ss_pred eEEEEecCCCCCHHHH-----------HHHHHHHHHHHHHHHCcChHHE
Confidence 5777544 45665554 7999999999999889886553
No 16
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=40.03 E-value=17 Score=20.62 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=20.9
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.|.+++.+.+|.+...+
T Consensus 14 ~eqk~~L~~~l~~~l~~~lgip~~~v 39 (76)
T 1gyx_A 14 EQQKAALAADITDVIIRHLNSKDSSI 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCceE
Confidence 45567899999999999999886653
No 17
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=39.31 E-value=19 Score=19.85 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=20.2
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
.+...++.+.|.+++.+.+|.+...
T Consensus 16 ~eqK~~l~~~lt~~l~~~lg~p~~~ 40 (67)
T 3m21_A 16 NEQKQQLIEGVSDLMVKVLNKNKAS 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHCcCccc
Confidence 4455899999999999999987554
No 18
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=35.94 E-value=25 Score=20.13 Aligned_cols=26 Identities=8% Similarity=0.155 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...++.+.+.+++.+.+|.+...+
T Consensus 14 ~eqK~~L~~~it~~l~~~lg~p~~~v 39 (76)
T 3ej9_A 14 DEQKRALSAGLLRVISEATGEPRENI 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccE
Confidence 45568999999999999999886553
No 19
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=34.55 E-value=29 Score=24.88 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=28.1
Q ss_pred ceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 32 HCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 32 e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
..+++.....+++.+. +.+.+++.+.+++.+++++|..
T Consensus 361 ~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~g~~ 398 (470)
T 3i6d_A 361 TLLRAYVGKAGDESIV-------DLSDNDIINIVLEDLKKVMNIN 398 (470)
T ss_dssp EEEEEEECCSSCCGGG-------TSCHHHHHHHHHHHHGGGSCCC
T ss_pred EEEEEEECCCCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence 3455555666666554 5677999999999999988864
No 20
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=33.06 E-value=60 Score=23.53 Aligned_cols=56 Identities=14% Similarity=0.049 Sum_probs=37.1
Q ss_pred eeEEEeCCCC-CCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 13 VSWMANNSAT-LLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 13 LsWia~nssK-pg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+.++..++++ |+. ..++..+++++.+..++.... +.+.+++.+.+++.++++++..
T Consensus 348 ~~~~~~~s~~~~~~-~p~g~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 404 (478)
T 2ivd_A 348 MLGAIHASTTFPFR-AEGGRVLYSCMVGGARQPGLV-------EQDEDALAALAREELKALAGVT 404 (478)
T ss_dssp CCEEEEHHHHCGGG-BSTTCEEEEEEEECTTCGGGG-------GSCHHHHHHHHHHHHHHHHCCC
T ss_pred eEEEEEEcccCCCc-CCCCCEEEEEEeCCcCCcccc-------CCCHHHHHHHHHHHHHHHhCCC
Confidence 4555555554 320 012345788888877765544 5567899999999999988753
No 21
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.53 E-value=76 Score=18.52 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 53 MPTATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 53 ~p~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+..+.+++.+.+.+.+.+.+|++...+
T Consensus 8 m~~m~~~~i~~~l~~~l~~~l~~~~~~i 35 (99)
T 2dnw_A 8 MPPLTLEGIQDRVLYVLKLYDKIDPEKL 35 (99)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTSCTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCHhhC
Confidence 3456788999999999999888865554
No 22
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=27.19 E-value=93 Score=17.84 Aligned_cols=29 Identities=0% Similarity=-0.164 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 046227 57 TASKVKTGMLEGVGAVAWPADRSCRKPIY 85 (86)
Q Consensus 57 ~~e~V~~~Ll~a~~~~lg~~~~~~~~p~~ 85 (86)
..+.+...|.+.++++||++.-.....||
T Consensus 13 ~~~~~e~~l~~i~~~vL~~~~i~~~~~Ff 41 (93)
T 4i4d_A 13 RRRALERDIAAIWAETLGRDSVGPHEDFA 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCTTCCTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 45677788888999999986555556666
No 23
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=26.95 E-value=71 Score=19.10 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 54 PTATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 54 p~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
+++ .+++...+.+++.+.+|.++..
T Consensus 13 ~~~-~~~l~~~~~~~l~~~lgkp~~~ 37 (115)
T 2xcz_A 13 VAD-ANSLLQELSSKLAELLGKPEKY 37 (115)
T ss_dssp CTT-HHHHHHHHHHHHHHHHTCCGGG
T ss_pred chh-HHHHHHHHHHHHHHHHCCChHH
Confidence 345 8899999999999999988653
No 24
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=26.28 E-value=46 Score=19.87 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 53 MPTATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 53 ~p~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
..++-.+.+.+.+.++..+.||.+..++
T Consensus 11 RT~EQK~~lI~~VT~a~~eslgap~esV 38 (70)
T 3ej9_B 11 LSVARKQQLIRDVIDVTNKSIGSDPKII 38 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCChHHE
Confidence 3455678999999999999999987774
No 25
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=25.62 E-value=38 Score=21.91 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 53 MPTATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 53 ~p~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
++++..+++...|++.|+++++.+...
T Consensus 24 i~~e~v~~lS~~Lid~La~i~~~~~e~ 50 (122)
T 1u9d_A 24 VEAHIVESLVPTLLNELSSLLSTARNA 50 (122)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCHHHHHHHhHHHHHHHHHHHCCCccc
Confidence 567888999999999999999887544
No 26
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=24.55 E-value=96 Score=22.45 Aligned_cols=22 Identities=5% Similarity=0.161 Sum_probs=19.1
Q ss_pred CCcHHHHHHHHHHHHHHhhCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+.+.+++.+.+++.+++++|..
T Consensus 374 ~~~~e~~~~~~~~~L~~~~g~~ 395 (475)
T 3lov_A 374 HESDEVLQQAVLQDLEKICGRT 395 (475)
T ss_dssp GSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHHHHHHHhCCC
Confidence 5677999999999999999874
No 27
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=24.19 E-value=85 Score=19.88 Aligned_cols=28 Identities=7% Similarity=0.013 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 53 MPTATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 53 ~p~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+++...++++.+.+++.+.+|.+....
T Consensus 11 rs~e~k~~L~~~it~al~e~~~vP~~dv 38 (136)
T 3mlc_A 11 RSREQRRAIADAVHDALVEVLAIPARDR 38 (136)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHCCCTTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcChhHE
Confidence 4466678999999999999999987763
No 28
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=24.06 E-value=72 Score=19.63 Aligned_cols=25 Identities=4% Similarity=-0.132 Sum_probs=20.7
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
++..+++...+.+++.+.+|.++..
T Consensus 14 ~e~k~~l~~~i~~al~~~~g~p~~~ 38 (131)
T 2aal_A 14 DAQIKSLLDAAHGAMVDAFGVPAND 38 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhH
Confidence 4456889999999999999998764
No 29
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=23.80 E-value=18 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=18.6
Q ss_pred cHHHHHHHHHHHHHH--------hhCCCCCCCCCCcc
Q 046227 57 TASKVKTGMLEGVGA--------VAWPADRSCRKPIY 85 (86)
Q Consensus 57 ~~e~V~~~Ll~a~~~--------~lg~~~~~~~~p~~ 85 (86)
-.+.+++.+.+.+.+ .+|++.|+.|+++|
T Consensus 25 l~~~aA~~i~~~i~~~~~~~~~~~l~LsgGsTp~~ly 61 (232)
T 1vl1_A 25 YVDFVVEKIRTKMEKLLEEKDKIFVVLAGGRTPLPVY 61 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCEEEEECCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEcCCccHHHHH
Confidence 344455555444443 46899999988877
No 30
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=21.22 E-value=1.1e+02 Score=16.63 Aligned_cols=26 Identities=4% Similarity=0.052 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHHHHHHHhhCCCCCC
Q 046227 54 PTATASKVKTGMLEGVGAVAWPADRS 79 (86)
Q Consensus 54 p~~~~e~V~~~Ll~a~~~~lg~~~~~ 79 (86)
+..+.+++...|.+.+.+++|.+...
T Consensus 8 ~~~~~~~~~~~l~~~~~~~l~~~~~~ 33 (88)
T 2afd_A 8 QPASVEDIQSWLIDQFAQQLDVDPDD 33 (88)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCHHH
Confidence 34567888888889999888885433
No 31
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=20.95 E-value=1.5e+02 Score=18.06 Aligned_cols=43 Identities=14% Similarity=0.295 Sum_probs=26.7
Q ss_pred CceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 046227 11 DSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVA 73 (86)
Q Consensus 11 ~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~l 73 (86)
...+||+++... ....|-|+.+.. +..+++|+..|-++|+.+.
T Consensus 85 ~~FafI~r~~~~------~~~~CHvF~c~~--------------~~~A~~i~~~l~~AF~~a~ 127 (137)
T 3so6_A 85 KVFAYIAQSQQN------ESLECHAFLCTK--------------RKVAQAVTLTVAQAFKVAF 127 (137)
T ss_dssp TEEEEEEECSSS------SCEEEEEEECSS--------------HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCC------CeEEEEEEEeCC--------------HHHHHHHHHHHHHHHHHHH
Confidence 356788877532 123677777643 2345778888888887543
No 32
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=20.71 E-value=81 Score=16.90 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhCCCC
Q 046227 62 KTGMLEGVGAVAWPAD 77 (86)
Q Consensus 62 ~~~Ll~a~~~~lg~~~ 77 (86)
..+++..|++++|.+.
T Consensus 5 ~de~ia~F~~iTG~~d 20 (45)
T 3e21_A 5 REMILADFQACTGIEN 20 (45)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHCCCC
Confidence 4678899999999864
Done!