Query 046227
Match_columns 86
No_of_seqs 106 out of 135
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 17:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046227.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046227hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v5za2 d.16.1.5 (A:290-401) M 72.2 5.9 0.00043 22.0 6.4 38 31-75 48-85 (112)
2 d2iida2 d.16.1.5 (A:320-432) L 70.4 6.6 0.00048 21.8 7.4 58 7-76 28-85 (113)
3 d1b5qa2 d.16.1.5 (A:294-405) P 52.9 15 0.0011 20.0 6.3 40 30-76 48-87 (112)
4 d2dw4a3 d.16.1.5 (A:655-763) L 49.4 17 0.0012 19.6 8.5 40 30-76 45-84 (109)
5 d1seza2 d.16.1.5 (A:330-441) P 42.9 19 0.0014 20.9 4.3 37 33-76 59-95 (112)
6 d2ivda2 d.16.1.5 (A:307-414) P 36.3 33 0.0024 19.5 4.7 38 32-76 54-91 (108)
7 d1otfa_ d.80.1.1 (A:) 4-oxaloc 35.4 13 0.00093 19.1 2.3 26 55-80 13-38 (59)
8 d1vkua_ a.28.1.1 (A:) Acyl car 35.1 25 0.0018 18.7 3.7 26 56-81 4-29 (85)
9 d1s0ya_ d.80.1.1 (A:) Trans-3- 34.6 13 0.00095 19.3 2.3 26 55-80 13-38 (62)
10 d1wj1a_ b.55.1.2 (A:) Numb {Mo 32.9 45 0.0033 19.7 6.1 43 10-73 102-144 (156)
11 d1dv5a_ a.28.1.3 (A:) apo-D-al 27.5 40 0.0029 17.9 3.7 22 59-80 3-24 (80)
12 d1gyxa_ d.80.1.1 (A:) 4-oxaloc 23.2 23 0.0017 19.5 2.1 26 55-80 14-39 (76)
13 d1klpa_ a.28.1.1 (A:) Acyl car 23.0 46 0.0033 18.7 3.5 25 57-81 4-28 (115)
14 d2gdwa1 a.28.1.2 (A:8-83) Pept 22.6 34 0.0025 18.1 2.7 26 60-85 7-32 (76)
15 d1yt3a1 a.60.8.3 (A:194-294) R 22.3 27 0.002 19.4 2.3 28 57-84 74-101 (101)
No 1
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.17 E-value=5.9 Score=21.96 Aligned_cols=38 Identities=13% Similarity=-0.108 Sum_probs=31.7
Q ss_pred CceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCC
Q 046227 31 SHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWP 75 (86)
Q Consensus 31 ~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~ 75 (86)
..+.+...+.+.|..-. ..+.+++.+.+++.|++++|.
T Consensus 48 ~~vL~~~~~G~~a~~~~-------~ls~~e~~~~~l~~L~~~~g~ 85 (112)
T d2v5za2 48 YAAIMGFILAHKARKLA-------RLTKEERLKKLCELYAKVLGS 85 (112)
T ss_dssp SCEEEEEEETHHHHHHT-------TSCHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEeCcHHHHHHH-------hCCHHHHHHHHHHHHHHHhCc
Confidence 34888899999988754 567899999999999999885
No 2
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=70.41 E-value=6.6 Score=21.82 Aligned_cols=58 Identities=2% Similarity=-0.001 Sum_probs=38.8
Q ss_pred ecCCCceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 7 IRGVDSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 7 v~~~~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+.+.+ +.++--.+..+ ..+..+++.....+-++.-- ..+.|++.+.+++.|++++|..
T Consensus 28 ~td~~-~~~~~~~~~~~----~~~~~vL~~~~~g~~a~~~~-------~l~~e~~~~~~l~~L~~~~~~~ 85 (113)
T d2iida2 28 TTDLP-SRFIYYPNHNF----TNGVGVIIAYGIGDDANFFQ-------ALDFKDCADIVFNDLSLIHQLP 85 (113)
T ss_dssp EESST-TCEEECCSSCC----TTSCEEEEEEEEHHHHHTTT-------TSCHHHHHHHHHHHHHHHHTCC
T ss_pred EeCCC-ceEEEeCCCCC----CCCceEEEEEeCCchhHHHH-------cCCHHHHHHHHHHHHHHHcCCc
Confidence 34553 66655433332 22345788888888876643 4567899999999999988754
No 3
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=52.86 E-value=15 Score=20.02 Aligned_cols=40 Identities=5% Similarity=-0.002 Sum_probs=31.7
Q ss_pred CCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 30 GSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 30 ~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+..+++.+...+.++.-. ..+.+++.+.+++.|.+++|..
T Consensus 48 ~~~vL~~~~~G~~a~~~~-------~l~~~~~~~~~l~~L~~~~~~~ 87 (112)
T d1b5qa2 48 DANVLLVTVTDEESRRIE-------QQSDEQTKAEIMQVLRKMFPGK 87 (112)
T ss_dssp TCCEEEEEEEHHHHHHHH-------TSCHHHHHHHHHHHHHHHCTTS
T ss_pred CCCEEEEEeCcHHHHHHH-------hCCHHHHHHHHHHHHHHHhCcc
Confidence 355899999998888743 4567999999999999988643
No 4
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.38 E-value=17 Score=19.57 Aligned_cols=40 Identities=3% Similarity=-0.127 Sum_probs=32.2
Q ss_pred CCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 30 GSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 30 ~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
+..+.+.....+.++.-- ..+.+++.+.+++.+++++|..
T Consensus 45 ~~~vL~~~~~G~~a~~~~-------~l~~~~~~~~~l~~L~~~~~~~ 84 (109)
T d2dw4a3 45 KAPILLALVAGEAAGIME-------NISDDVIVGRCLAILKGIFGSS 84 (109)
T ss_dssp -CCEEEEEECHHHHHHHT-------TSCHHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEEEECcHHHHHHH-------hcCHHHHHHHHHHHHHHHhCcc
Confidence 345888999999988744 5567999999999999998765
No 5
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=42.94 E-value=19 Score=20.87 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=26.4
Q ss_pred eEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 33 CWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 33 ~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
-.++...-.+-.+.+ +.+.|++.+..++.++++||+.
T Consensus 59 ll~~~~Gg~~~~~~~-------~~~d~~l~~~a~~dl~~~lgi~ 95 (112)
T d1seza2 59 LYTTFVGGSRNRELA-------KASRTELKEIVTSDLKQLLGAE 95 (112)
T ss_dssp EEEEEEESTTCGGGT-------TCCHHHHHHHHHHHHHHHHCBC
T ss_pred EEEEEECCCCCcccc-------cCCHHHHHHHHHHHHHHHhCCC
Confidence 345555444444444 5667999999999999999986
No 6
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Probab=36.30 E-value=33 Score=19.48 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=27.3
Q ss_pred ceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhhCCC
Q 046227 32 HCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVAWPA 76 (86)
Q Consensus 32 e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~lg~~ 76 (86)
.-.++.-.-.+..+.+ +.+.|++.+..+++++++||+.
T Consensus 54 ~llrv~~Gg~~~~~~~-------~~~d~~l~~~a~~dL~~~lgi~ 91 (108)
T d2ivda2 54 VLYSCMVGGARQPGLV-------EQDEDALAALAREELKALAGVT 91 (108)
T ss_dssp EEEEEEEECTTCGGGG-------GSCHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEEeCCCCCcccc-------cCCHHHHHHHHHHHHHHHhCCC
Confidence 3455555554444444 5677999999999999999986
No 7
>d1otfa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase {Pseudomonas sp., DmpI [TaxId: 306]}
Probab=35.43 E-value=13 Score=19.14 Aligned_cols=26 Identities=4% Similarity=-0.084 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...+++..+.+++.+.+|.+...+
T Consensus 13 ~eqK~~l~~~it~~~~~~~g~~~~~v 38 (59)
T d1otfa_ 13 DEQKETLIRQVSEAMANSLDAPLERV 38 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 45568999999999999999886553
No 8
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]}
Probab=35.09 E-value=25 Score=18.66 Aligned_cols=26 Identities=8% Similarity=-0.069 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHHHHHHhhCCCCCCCC
Q 046227 56 ATASKVKTGMLEGVGAVAWPADRSCR 81 (86)
Q Consensus 56 ~~~e~V~~~Ll~a~~~~lg~~~~~~~ 81 (86)
-+.+++.+.|.+.+++.+|.+...+.
T Consensus 4 m~~~~i~~~l~~iv~~~l~~~~~~i~ 29 (85)
T d1vkua_ 4 MERKKLIAKFVEIASEKMGKDLETVD 29 (85)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCSCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHCC
Confidence 35689999999999999999877663
No 9
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=34.62 E-value=13 Score=19.33 Aligned_cols=26 Identities=8% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
.+...+++..|.+++.+.+|.+..++
T Consensus 13 ~eqK~~l~~~it~~~~~~~g~~~e~v 38 (62)
T d1s0ya_ 13 DEQKRALSAGLLRVISEATGEPRENI 38 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 45568999999999999999886553
No 10
>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.90 E-value=45 Score=19.74 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCceeEEEeCCCCCCCCCCCCCceEEEEeChhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHhh
Q 046227 10 VDSVSWMANNSATLLSPQSDGSHCWTFFSTAAYGKGNKVPLENMPTATASKVKTGMLEGVGAVA 73 (86)
Q Consensus 10 ~~~LsWia~nssKpg~~~r~~~e~WvlhsT~~ws~~hl~pqe~~p~~~~e~V~~~Ll~a~~~~l 73 (86)
.....||+++..+. ...|-|+++.. + .+++|+..|-++|+.++
T Consensus 102 ~~~FafI~~~~~~~------~~~CHVF~c~~--------------~-~A~~I~~ai~~AF~~a~ 144 (156)
T d1wj1a_ 102 DRAFSYICRDGTTR------RWICHCFMAVK--------------D-TGERLSHAVGCAFAACL 144 (156)
T ss_dssp SSEEEEEEECSSSS------SEEEEEEEESS--------------S-CHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCCC------cEEEEEEEeCc--------------H-HHHHHHHHHHHHHHHHH
Confidence 34578998875432 25799997743 2 35788888888887654
No 11
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]}
Probab=27.51 E-value=40 Score=17.86 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCC
Q 046227 59 SKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 59 e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
++|...+++-+++.+|.+...+
T Consensus 3 e~I~~~v~~il~~~l~~~~~~i 24 (80)
T d1dv5a_ 3 EAIKNGVLDILADLTGSDDVKK 24 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTT
T ss_pred HHHHHHHHHHHHHHhccchhhc
Confidence 6888899999999999887665
No 12
>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE {Escherichia coli [TaxId: 562]}
Probab=23.21 E-value=23 Score=19.51 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=21.0
Q ss_pred CCcHHHHHHHHHHHHHHhhCCCCCCC
Q 046227 55 TATASKVKTGMLEGVGAVAWPADRSC 80 (86)
Q Consensus 55 ~~~~e~V~~~Ll~a~~~~lg~~~~~~ 80 (86)
++-..++++.+.+++.+.+|.+..++
T Consensus 14 ~EQK~~L~~~iT~a~~~~lg~~~e~V 39 (76)
T d1gyxa_ 14 EQQKAALAADITDVIIRHLNSKDSSI 39 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 34567899999999999999887664
No 13
>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.96 E-value=46 Score=18.70 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCCCC
Q 046227 57 TASKVKTGMLEGVGAVAWPADRSCR 81 (86)
Q Consensus 57 ~~e~V~~~Ll~a~~~~lg~~~~~~~ 81 (86)
+.++|...|.+-+.+.+|++..-+.
T Consensus 4 t~~~i~~~l~~iv~~~l~~~~~~i~ 28 (115)
T d1klpa_ 4 TQEEIIAGIAEIIEEVTGIEPSEIT 28 (115)
T ss_dssp CHHHHHHHHHHHHHHHTCCCTTTCC
T ss_pred CHHHHHHHHHHHHHHHHCCCccccC
Confidence 5689999999999999999877663
No 14
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=22.63 E-value=34 Score=18.13 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCcc
Q 046227 60 KVKTGMLEGVGAVAWPADRSCRKPIY 85 (86)
Q Consensus 60 ~V~~~Ll~a~~~~lg~~~~~~~~p~~ 85 (86)
++-+.|.+.++++||.+.-.+...||
T Consensus 7 ~~E~~l~~i~~~vL~~~~i~~~~~f~ 32 (76)
T d2gdwa1 7 AVESKLAEIWERVLGVSGIGILDNFF 32 (76)
T ss_dssp HHHHHHHHHHHHHTTSSCCCTTTTSS
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCHH
Confidence 45666778888888887555556655
No 15
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=22.28 E-value=27 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.041 Sum_probs=22.9
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 046227 57 TASKVKTGMLEGVGAVAWPADRSCRKPI 84 (86)
Q Consensus 57 ~~e~V~~~Ll~a~~~~lg~~~~~~~~p~ 84 (86)
...+...++++.++++...+...+|+|.
T Consensus 74 ~~~~~g~~il~~i~~a~~~~~~~~P~pl 101 (101)
T d1yt3a1 74 EIRFHGKTLLALVEKAQTLPEDALPQPM 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCHhhCCCCC
Confidence 4567778999999988888888898883
Done!