BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046228
         (121 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A
           Member Of A New Cystine-Rich Family
          Length = 80

 Score = 32.3 bits (72), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 67  CCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCRPKVPRGYKC 121
           CC+L+G L  ++A VCLC  ++L  L ++ LN    ++ L+LN C    P    C
Sbjct: 28  CCALIGGLGDIEAIVCLC--IQLRALGILNLN---RNLQLILNSCGRSYPSNATC 77


>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
           Tyrosine Phosphatase From Homo Sapiens
 pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
           Tyrosine Phosphatase From Homo Sapiens
          Length = 297

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 86  SLKLNVLDLIKLNIPKLSVNLLLNQCR 112
           SL+   L LI L+IP  + +L LN+C+
Sbjct: 28  SLQFEELKLIGLDIPHFAADLPLNRCK 54


>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
 pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
          Length = 295

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 86  SLKLNVLDLIKLNIPKLSVNLLLNQCR 112
           SL+   L LI L+IP  + +L LN+C+
Sbjct: 26  SLQFEELKLIGLDIPHFAADLPLNRCK 52


>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
           Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
           Cryp-2CPTPRO
 pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
           Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
           Cryp-2CPTPRO
          Length = 312

 Score = 26.9 bits (58), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 86  SLKLNVLDLIKLNIPKLSVNLLLNQCR 112
           SL+   L LI L+IP  + +L +N+C+
Sbjct: 35  SLQFEELKLIGLDIPHFAADLPMNRCK 61


>pdb|2BJF|A Chain A, Crystal Structure Of Conjugated Bile Acid Hydrolase From
           Clostridium Perfringens In Complex With Reaction
           Products Taurine And Deoxycholate
 pdb|2BJG|A Chain A, Crystal Structure Of Conjugated Bile Acid Hydrolase From
           Clostridium Perfringens In Complex With Reaction
           Products Taurine And Deoxycholate
 pdb|2BJG|B Chain B, Crystal Structure Of Conjugated Bile Acid Hydrolase From
           Clostridium Perfringens In Complex With Reaction
           Products Taurine And Deoxycholate
          Length = 329

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 83  LCTSLKLNVLDLIKLNIPKLSVNLLLNQCRPKVPRGYKC 121
           +CT L L   D + L    + +    NQ    +PR +KC
Sbjct: 1   MCTGLALETKDGLHLFGRNMDIEYSFNQSIIFIPRNFKC 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,403,153
Number of Sequences: 62578
Number of extensions: 72166
Number of successful extensions: 110
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 8
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)