Query 046228
Match_columns 121
No_of_seqs 105 out of 274
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 09:57:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046228.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046228hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01958 HPS_like HPS_like: Hyd 100.0 1.1E-37 2.3E-42 217.8 2.6 84 32-121 2-85 (85)
2 PF14547 Hydrophob_seed: Hydro 100.0 8E-37 1.7E-41 213.1 4.9 84 33-121 1-84 (85)
3 PF14368 LTP_2: Probable lipid 97.3 2.9E-05 6.3E-10 52.2 -1.5 55 62-121 41-96 (96)
4 cd04660 nsLTP_like nsLTP_like: 96.9 0.00073 1.6E-08 44.8 2.2 69 38-121 5-73 (73)
5 smart00499 AAI Plant lipid tra 96.8 0.0008 1.7E-08 42.5 2.1 75 34-121 1-79 (79)
6 cd01959 nsLTP2 nsLTP2: Non-spe 96.1 0.002 4.3E-08 42.8 0.5 62 39-117 4-65 (66)
7 PF00234 Tryp_alpha_amyl: Prot 91.7 0.0076 1.7E-07 40.3 -4.0 68 39-121 13-90 (90)
8 cd00010 AAI_LTSS AAI_LTSS: Alp 91.3 0.082 1.8E-06 33.2 0.7 48 62-112 14-62 (63)
9 cd01960 nsLTP1 nsLTP1: Non-spe 86.6 0.32 6.9E-06 32.9 0.9 68 38-116 7-79 (89)
10 PF07172 GRP: Glycine rich pro 84.4 0.82 1.8E-05 32.4 2.2 21 1-21 1-22 (95)
No 1
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=1.1e-37 Score=217.83 Aligned_cols=84 Identities=46% Similarity=1.055 Sum_probs=81.7
Q ss_pred CCCCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhc
Q 046228 32 SSCPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQC 111 (121)
Q Consensus 32 ~~CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~C 111 (121)
++||+|++|||+|+||| |++++.+|. ++.++|||+|+||+|+|||+|||||+|+|++| |++|+| +++++++|.|
T Consensus 2 ~~CP~dalkLgvCanvL-~l~~~~~g~---~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~p-v~l~llln~C 75 (85)
T cd01958 2 PTCPRDALKLGVCANVL-GLSLLLLGT---PAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIP-VALSLLLNSC 75 (85)
T ss_pred CCCCcchHHhchhHhhh-hccccccCC---CccchHHHHHcCchhhheeeeeeeeeeccccC-cccccC-hhHHHHHHHH
Confidence 68999999999999999 688988999 99999999999999999999999999999999 999999 9999999999
Q ss_pred CCCCCCCCcC
Q 046228 112 RPKVPRGYKC 121 (121)
Q Consensus 112 Gk~~P~gf~C 121 (121)
||++|+||+|
T Consensus 76 Gk~~P~gf~C 85 (85)
T cd01958 76 GRNVPPGFTC 85 (85)
T ss_pred cCcCCCCCcC
Confidence 9999999998
No 2
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=8e-37 Score=213.12 Aligned_cols=84 Identities=50% Similarity=1.112 Sum_probs=82.3
Q ss_pred CCCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhcC
Q 046228 33 SCPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCR 112 (121)
Q Consensus 33 ~CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~CG 112 (121)
+||+|++||++|+||| |++++.+|. |++++|||+|+||+|+|||+|||||+|+|++|+|++++| +++++++|.||
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~---~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ip-v~l~~lln~CG 75 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGN---PPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIP-VALNLLLNACG 75 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCC---CCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccc-cHHHHHHHHhC
Confidence 6999999999999999 899999999 899999999999999999999999999999998899999 99999999999
Q ss_pred CCCCCCCcC
Q 046228 113 PKVPRGYKC 121 (121)
Q Consensus 113 k~~P~gf~C 121 (121)
|++|+||+|
T Consensus 76 k~~p~gf~C 84 (85)
T PF14547_consen 76 KTVPSGFTC 84 (85)
T ss_pred CcCcCCCcC
Confidence 999999998
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=97.29 E-value=2.9e-05 Score=52.21 Aligned_cols=55 Identities=31% Similarity=0.598 Sum_probs=34.8
Q ss_pred CCCCCCCcccccccccccchhhhhhhcccc-ccceeccccchhHHHHHHhcCCCCCCCCcC
Q 046228 62 TPNHPCCSLLGDLVRVQARVCLCTSLKLNV-LDLIKLNIPKLSVNLLLNQCRPKVPRGYKC 121 (121)
Q Consensus 62 ~~~~~CC~li~gL~d~dAAvCLCtaiKanv-Lg~i~~~~p~~~l~llln~CGk~~P~gf~C 121 (121)
+|.++||.-++.+.+. ...|||..++... .+ +.+|.. ....|...||...|. ++|
T Consensus 41 ~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~-~~in~~--~a~~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 41 APSAACCSALKSVVQA-DPPCLCQLLNSPGAPG-FGINVT--RALALPAACGVPVPP-SKC 96 (96)
T ss_dssp ---HHHHHHHCC-----HCCHHHCCCC-CCHCH-HCCTCH--HHHHHHHHCTSS-S-----
T ss_pred CCCHHHHHHHHHhccC-CCCCHHHhcCcccccc-CCcCHH--HHHHHHHHcCCCCCC-CCC
Confidence 6778999999999874 4899999999987 45 456655 566788999999999 887
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.86 E-value=0.00073 Score=44.83 Aligned_cols=69 Identities=26% Similarity=0.517 Sum_probs=48.7
Q ss_pred cccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhcCCCCCC
Q 046228 38 TLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCRPKVPR 117 (121)
Q Consensus 38 ~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~CGk~~P~ 117 (121)
..+|..|...+.+ |....+|.+.||+-++.+ |. .|+|..++..... + +|.. .+..|-..||..+|+
T Consensus 5 ~~~L~~C~~yl~~------~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~-~-i~~~--~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 5 LDLLAECQPYVTG------PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQ-I-IDPD--KAVYLPAKCGLPLPP 70 (73)
T ss_pred HHHHHHHHHHHcC------CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCccc-c-cCHH--HHHHHHHHcCCCCCC
Confidence 3467788888632 110113667899999974 22 3999999887665 2 4554 577789999999999
Q ss_pred CCcC
Q 046228 118 GYKC 121 (121)
Q Consensus 118 gf~C 121 (121)
++|
T Consensus 71 -~~C 73 (73)
T cd04660 71 -SSC 73 (73)
T ss_pred -CCC
Confidence 988
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.83 E-value=0.0008 Score=42.47 Aligned_cols=75 Identities=32% Similarity=0.631 Sum_probs=51.7
Q ss_pred CCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhcccccccee----ccccchhHHHHHH
Q 046228 34 CPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIK----LNIPKLSVNLLLN 109 (121)
Q Consensus 34 CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~----~~~p~~~l~llln 109 (121)
|.....++..|...+.+-. -.. ++.++||..++++. ...|+|.+++....+ +. ++. .....|-+
T Consensus 1 C~~~~~~~~~c~~~~~~~~---~~~---~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~-~~~~~~~~~--~~a~~lp~ 68 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGS---PGA---PPSQQCCSQLRGLN---SAQCRCLALRAAVLG-ILEIPGVNA--QNAASLPS 68 (79)
T ss_pred ChhhhhhHHhhHHHHcCCC---CCC---CCchHHHHHHHHhc---ccCCcchhhhccccc-ccchhhhhH--HHHHhhHH
Confidence 4444455667777763210 012 56788999999997 677999999998776 32 132 46777889
Q ss_pred hcCCCCCCCCcC
Q 046228 110 QCRPKVPRGYKC 121 (121)
Q Consensus 110 ~CGk~~P~gf~C 121 (121)
.||...|. +.|
T Consensus 69 ~C~~~~~~-~~C 79 (79)
T smart00499 69 ACGVPPPY-TDC 79 (79)
T ss_pred hcCCCCCC-CCC
Confidence 99999876 555
No 6
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.06 E-value=0.002 Score=42.84 Aligned_cols=62 Identities=27% Similarity=0.582 Sum_probs=46.5
Q ss_pred ccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhcCCCCCC
Q 046228 39 LKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCRPKVPR 117 (121)
Q Consensus 39 lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~CGk~~P~ 117 (121)
.+|..|...+. .|. +|.++||..++. +.-|||.-+|...++ --+|.| .-.-|.+.||..+|.
T Consensus 4 ~~L~~C~~ai~------~~~---~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~-~~i~~~--~A~~l~~~Cgv~~P~ 65 (66)
T cd01959 4 TQLSPCLPAIL------GGS---PPSAACCAKLKE-----QQSCLCQYAKNPSLK-QYVNSP--NARKVLAACGVPYPN 65 (66)
T ss_pred hhcccCHHHHh------CCC---CCCHHHHHHHhc-----CCCCeeeeecCccHH-hhcCcH--HHHHHHHHcCCCCCC
Confidence 46788888753 355 788999999987 237999999887666 345655 456688899999874
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=91.72 E-value=0.0076 Score=40.28 Aligned_cols=68 Identities=26% Similarity=0.625 Sum_probs=48.7
Q ss_pred ccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccce----------eccccchhHHHHH
Q 046228 39 LKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLI----------KLNIPKLSVNLLL 108 (121)
Q Consensus 39 lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i----------~~~~p~~~l~lll 108 (121)
..+..|...+.+ +. .++.++||.-|+.+ -..|.|.++|..+.+++ .++. -...-|-
T Consensus 13 ~~l~~c~~~~~~------~~--~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~--~~a~~LP 78 (90)
T PF00234_consen 13 VRLSPCLPYLQG------GC--QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMA--QRAQNLP 78 (90)
T ss_dssp SHHHGGHHHHTT------SS--SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHH--HHHHHHH
T ss_pred ccccccHHHHhc------cc--ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHH--HHHHHHH
Confidence 557778877642 11 13567899999999 78999999999887611 2333 3667788
Q ss_pred HhcCCCCCCCCcC
Q 046228 109 NQCRPKVPRGYKC 121 (121)
Q Consensus 109 n~CGk~~P~gf~C 121 (121)
+.||..+|. |.|
T Consensus 79 ~~C~v~~~~-~~C 90 (90)
T PF00234_consen 79 SMCNVSPPY-TDC 90 (90)
T ss_dssp HHTTSSSSS-S-G
T ss_pred HHCCCCCCC-CCC
Confidence 999999887 665
No 8
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=91.31 E-value=0.082 Score=33.23 Aligned_cols=48 Identities=31% Similarity=0.548 Sum_probs=32.7
Q ss_pred CCCCCCCcccccccccccchhhhhhhccccccceec-cccchhHHHHHHhcC
Q 046228 62 TPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKL-NIPKLSVNLLLNQCR 112 (121)
Q Consensus 62 ~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~-~~p~~~l~llln~CG 112 (121)
.|.++||+-++.+.+.| ..|||..+|........+ |. -....|-+.||
T Consensus 14 ~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~--~~a~~LP~~Cg 62 (63)
T cd00010 14 APPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNA--TRALALPAACG 62 (63)
T ss_pred CCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccH--HHHHhchHhcC
Confidence 57788999999998764 469999999876441111 12 34555666776
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=86.56 E-value=0.32 Score=32.89 Aligned_cols=68 Identities=31% Similarity=0.517 Sum_probs=44.3
Q ss_pred cccchhhhhhhhhhhhhhcCCCCCCCCCCCCccccccccc----ccchhhhhhhcccccccee-ccccchhHHHHHHhcC
Q 046228 38 TLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRV----QARVCLCTSLKLNVLDLIK-LNIPKLSVNLLLNQCR 112 (121)
Q Consensus 38 ~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~----dAAvCLCtaiKanvLg~i~-~~~p~~~l~llln~CG 112 (121)
..+|.-|...+.|- +. .|..+||.-++.+.+. +...|+|.-+|....+ +. +|.. .+..|=..||
T Consensus 7 ~~~l~~C~~y~~g~-----~~---~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~-~~~i~~~--~a~~LP~~C~ 75 (89)
T cd01960 7 TSLLAPCLGYLTGG-----GP---APSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAG-ISGLNPG--RAAGLPGKCG 75 (89)
T ss_pred HhhHHhHHHHHhCC-----CC---CCChHHhhhhHHHhhccCCCCchhhhhhcccccccc-cCCCCHH--HHHhChHhcc
Confidence 34677888887531 12 5778899999998654 2335677767776666 33 4433 4555667898
Q ss_pred CCCC
Q 046228 113 PKVP 116 (121)
Q Consensus 113 k~~P 116 (121)
-+.|
T Consensus 76 v~~~ 79 (89)
T cd01960 76 VSIP 79 (89)
T ss_pred cCCC
Confidence 8764
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=84.44 E-value=0.82 Score=32.40 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=14.4
Q ss_pred CchhHH-HHHHHHHHHHHHhcC
Q 046228 1 MASASK-ALALFFTLLIIATSI 21 (121)
Q Consensus 1 Ma~~~~-~~alfL~lnl~~~~~ 21 (121)
||||+- .+++||++.|+++|-
T Consensus 1 MaSK~~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSE 22 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhh
Confidence 898773 457777777777653
Done!