Query 046228
Match_columns 121
No_of_seqs 105 out of 274
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:22:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046228.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046228hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 5E-31 1.7E-35 181.6 0.3 72 32-121 6-77 (80)
2 1n89_A Lipid transfer protein; 96.2 0.0013 4.4E-08 42.4 0.9 61 39-116 5-65 (67)
3 2rkn_A DIR1 protein, AT5G48485 95.5 0.0042 1.4E-07 40.6 1.2 70 32-117 3-75 (77)
4 1l6h_A LTP2, non-specific lipi 94.7 0.0012 4.1E-08 42.8 -3.2 61 39-116 6-66 (69)
5 1siy_A LTP 1, NS-LTP1, nonspec 92.4 0.018 6.1E-07 38.9 -0.6 70 33-116 2-78 (91)
6 2alg_A Non-specific lipid tran 91.3 0.013 4.6E-07 39.5 -2.2 71 34-117 4-80 (92)
7 1bwo_A NS-LTP1, nonspecific li 89.8 0.012 4.1E-07 39.7 -3.6 66 38-116 7-78 (90)
8 2ljo_A Non-specific lipid-tran 88.0 0.052 1.8E-06 37.0 -1.4 68 38-116 8-79 (93)
9 1afh_A Maize nonspecific lipid 82.0 0.18 6.1E-06 34.0 -0.9 70 34-116 4-80 (93)
10 1t12_A LTP 1, nonspecific lipi 76.1 0.42 1.5E-05 32.1 -0.5 68 34-116 4-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=5e-31 Score=181.60 Aligned_cols=72 Identities=39% Similarity=0.862 Sum_probs=65.1
Q ss_pred CCCCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhc
Q 046228 32 SSCPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQC 111 (121)
Q Consensus 32 ~~CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~C 111 (121)
++|| |||+|+|||+|.+ ++.++|||+|+||+|+|||+|||||+|+ || | +|+| +++++++|.|
T Consensus 6 ~~CP----kLgvCanvL~g~~---------~~~~~CC~Ll~GL~dleAAvCLCtaik~--Lg-i-lnlp-v~L~llln~C 67 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGSL---------GTVDDCCALIGGLGDIEAIVCLCIQLRA--LG-I-LNLN-RNLQLILNSC 67 (80)
T ss_dssp CCSC----CCGGGGGGGGTCC---------TTHHHHHHHHHTSCHHHHHHHHHHHHHH--HT-C-SCHH-HHHHHHHHHT
T ss_pred CCCC----chhHHHHHhCcCC---------CCCCccchhhhCcchhhhhhhhhhhccc--cc-e-eecC-hhHHHHHHHh
Confidence 4799 8999999996421 3567999999999999999999999994 89 7 8999 9999999999
Q ss_pred CCCCCCCCcC
Q 046228 112 RPKVPRGYKC 121 (121)
Q Consensus 112 Gk~~P~gf~C 121 (121)
||++|+||+|
T Consensus 68 gk~~P~gF~C 77 (80)
T 1hyp_A 68 GRSYPSNATC 77 (80)
T ss_dssp TCSSCCCCCC
T ss_pred CCcCcCCCCC
Confidence 9999999998
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.16 E-value=0.0013 Score=42.39 Aligned_cols=61 Identities=25% Similarity=0.492 Sum_probs=45.4
Q ss_pred ccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhcCCCCC
Q 046228 39 LKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCRPKVP 116 (121)
Q Consensus 39 lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~CGk~~P 116 (121)
-+|..|...+. -|. +|..+||+-+++ ...|+|..+|...++ ..+|.+ ...-|...||..+|
T Consensus 5 ~~L~pC~~~v~------~~~---~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~--~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAIL------SGA---KPSGECCGNLRA-----QQGCFCQYAKDPTYG-QYIRSP--HARDTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHT------TCC---CCCHHHHHHHHH-----HSSHHHHGGGCSTTH-HHHTCH--HHHHHHHHHTSCCS
T ss_pred hhcccCHHHHc------CCC---CCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHH--HHHHHHHHcCCCCC
Confidence 35788988863 244 677789999985 378999999987666 446665 45567889999988
No 3
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.48 E-value=0.0042 Score=40.57 Aligned_cols=70 Identities=20% Similarity=0.446 Sum_probs=48.1
Q ss_pred CCCCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhcc---ccccceeccccchhHHHHH
Q 046228 32 SSCPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKL---NVLDLIKLNIPKLSVNLLL 108 (121)
Q Consensus 32 ~~CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKa---nvLg~i~~~~p~~~l~lll 108 (121)
.+|-.+..+|..|...+.+ |. ..+|..+||+-+++ +| ..|||..++. .-+| | |.+ ....|-
T Consensus 3 ~~C~~~~~~L~pC~~yv~~------~~-~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~g-i--n~~--~A~~LP 66 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK------EN-PTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFG-V--DPE--LASALP 66 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS------SS-CCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHT-B--CHH--HHHHHH
T ss_pred chHHhHHHhHhhCHHHHcC------CC-CCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcC-c--CHH--HHHHHH
Confidence 4687777888999988742 21 01566789999998 33 3899998883 3335 3 433 345577
Q ss_pred HhcCCCCCC
Q 046228 109 NQCRPKVPR 117 (121)
Q Consensus 109 n~CGk~~P~ 117 (121)
..||..+|.
T Consensus 67 ~~Cgv~~p~ 75 (77)
T 2rkn_A 67 KQCGLANAP 75 (77)
T ss_dssp HHTTCSCCC
T ss_pred HHcCCCCCC
Confidence 899999874
No 4
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=94.66 E-value=0.0012 Score=42.76 Aligned_cols=61 Identities=25% Similarity=0.490 Sum_probs=43.7
Q ss_pred ccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccccchhhhhhhccccccceeccccchhHHHHHHhcCCCCC
Q 046228 39 LKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCRPKVP 116 (121)
Q Consensus 39 lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~dAAvCLCtaiKanvLg~i~~~~p~~~l~llln~CGk~~P 116 (121)
-+|..|...+. -|. +|..+||+-+++ ...|+|..+|...++ ..+|.+ ...-|...||..+|
T Consensus 6 ~~L~pC~~~v~------~~~---~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~-~~in~~--~A~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 6 GQLTVCTGAIA------GGA---RPTAACCSSLRA-----QQGCFCQFAKDPRYG-RYVNSP--NARKAVSSCGIALP 66 (69)
T ss_dssp TTHHHHHHHHT------TCC---STTHHHHHHHHH-----HHHHHHHHTTCSSHH-HHTTTT--TGGGCCCCCSSCSC
T ss_pred hhcccCHHHHc------CCC---CCCHHHHHhhCC-----CCCCCCccccCcccc-cccCHH--HHHHHHHHcCCCCC
Confidence 35788988873 244 677789999985 378999999876655 345555 23346678999887
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=92.44 E-value=0.018 Score=38.85 Aligned_cols=70 Identities=21% Similarity=0.523 Sum_probs=45.2
Q ss_pred CCCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCccccccccc-----c-cchhhhhhhccccccce-eccccchhHH
Q 046228 33 SCPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRV-----Q-ARVCLCTSLKLNVLDLI-KLNIPKLSVN 105 (121)
Q Consensus 33 ~CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~-----d-AAvCLCtaiKanvLg~i-~~~~p~~~l~ 105 (121)
+|-....+|.-|.+.+.| |. +|..+||.-+++|.+. | -+.|+|. |...-+ + .+|.. ...
T Consensus 2 ~C~~v~~~L~pCl~yv~~------~~---~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~--k~~~~~-~~~in~~--~A~ 67 (91)
T 1siy_A 2 TCGQVQGNLAQCIGFLQK------GG---VVPPSCCTGVKNILNSSRTTADRRAVCSCL--KAAAGA-VRGINPN--NAE 67 (91)
T ss_dssp CTTTTHHHHHHHHHHHTS------CS---CCCHHHHHHHHHHHTTTCSSHHHHHHHHHH--HHHTTC-CSSCCHH--HHH
T ss_pred CHHHHHHhccCcHHHHhC------CC---CCcHHHHHHHHHHHhhhccCCCCCcCCccc--CCcccc-cCCcCHH--HHH
Confidence 355556678889888742 33 4667899999998643 2 2579997 432222 2 24443 345
Q ss_pred HHHHhcCCCCC
Q 046228 106 LLLNQCRPKVP 116 (121)
Q Consensus 106 llln~CGk~~P 116 (121)
.|-..||..+|
T Consensus 68 ~LP~~Cgv~~p 78 (91)
T 1siy_A 68 ALPGKCGVNIP 78 (91)
T ss_dssp HHHHHHTCCCS
T ss_pred HHHHHcCCCCC
Confidence 57889999876
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=91.31 E-value=0.013 Score=39.54 Aligned_cols=71 Identities=18% Similarity=0.462 Sum_probs=45.5
Q ss_pred CCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCccccccccc-----c-cchhhhhhhccccccceeccccchhHHHH
Q 046228 34 CPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRV-----Q-ARVCLCTSLKLNVLDLIKLNIPKLSVNLL 107 (121)
Q Consensus 34 CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~-----d-AAvCLCtaiKanvLg~i~~~~p~~~l~ll 107 (121)
|-....+|.-|...+.| |. ++..+||.-+++|... | -+.|+|...++.-++ .+|.+ ....|
T Consensus 4 C~~v~~~L~pCl~y~~~------~~---~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~--~in~~--~A~~L 70 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVRG------GG---AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP--GVNPN--NAAAL 70 (92)
T ss_dssp HHHHHHHHGGGHHHHHH------CS---CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST--TCCHH--HHHHH
T ss_pred hHHHHHhccCcHHHHcC------CC---CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC--ccChH--HHHHH
Confidence 33334467888888743 33 4445899999998632 2 157999866665552 23433 34557
Q ss_pred HHhcCCCCCC
Q 046228 108 LNQCRPKVPR 117 (121)
Q Consensus 108 ln~CGk~~P~ 117 (121)
-..||-.+|-
T Consensus 71 P~~Cgv~~p~ 80 (92)
T 2alg_A 71 PGKCGVSIPY 80 (92)
T ss_dssp HHHTTCCCSS
T ss_pred HHHcCCCCCC
Confidence 7899998763
No 7
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=89.76 E-value=0.012 Score=39.73 Aligned_cols=66 Identities=20% Similarity=0.458 Sum_probs=40.6
Q ss_pred cccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccc------cchhhhhhhccccccceeccccchhHHHHHHhc
Q 046228 38 TLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQ------ARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQC 111 (121)
Q Consensus 38 ~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~d------AAvCLCtaiKanvLg~i~~~~p~~~l~llln~C 111 (121)
..+|.-|.+.+.| |. +|..+||.-+++|.+.- -+.|+|-.-.+.-++ .+|.. ....|-..|
T Consensus 7 ~~~L~pCl~y~~~------~~---~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~--~A~~LP~~C 73 (90)
T 1bwo_A 7 DSLVRPCLSYVQG------GP---GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNED--NARSIPPKC 73 (90)
T ss_dssp HHHHGGGHHHHTT------CS---CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT--TCCHH--HHHTHHHHH
T ss_pred HHhhcccHHHHcC------CC---CCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC--CcCHH--HHHHHHHHc
Confidence 4467778877642 33 46667999999987421 268999432222231 23433 344577899
Q ss_pred CCCCC
Q 046228 112 RPKVP 116 (121)
Q Consensus 112 Gk~~P 116 (121)
|-.+|
T Consensus 74 ~v~~p 78 (90)
T 1bwo_A 74 GVNLP 78 (90)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 99876
No 8
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=87.96 E-value=0.052 Score=37.00 Aligned_cols=68 Identities=29% Similarity=0.578 Sum_probs=43.7
Q ss_pred cccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccc----cchhhhhhhccccccceeccccchhHHHHHHhcCC
Q 046228 38 TLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQ----ARVCLCTSLKLNVLDLIKLNIPKLSVNLLLNQCRP 113 (121)
Q Consensus 38 ~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~d----AAvCLCtaiKanvLg~i~~~~p~~~l~llln~CGk 113 (121)
...|.-|.+.+.| |. .+..+||.-+++|.+.- -..|+|..+|...-++..+|.. ....|=..||-
T Consensus 8 ~~~L~pCl~Yv~g------~~---~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~--~a~~LP~~CgV 76 (93)
T 2ljo_A 8 TSDLSPCLTYLTG------GP---GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTN--NAAALPGKCGV 76 (93)
T ss_dssp HHHHHHHHHHHTT------SS---CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHH--HHHHHHHHHTC
T ss_pred HHHHHhHHHHHcC------CC---CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHH--HHHhhhHhcCC
Confidence 3456667777632 33 45668999888886542 2468898888654332234443 44557789999
Q ss_pred CCC
Q 046228 114 KVP 116 (121)
Q Consensus 114 ~~P 116 (121)
++|
T Consensus 77 ~~p 79 (93)
T 2ljo_A 77 NIP 79 (93)
T ss_dssp CCS
T ss_pred CCC
Confidence 988
No 9
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=82.03 E-value=0.18 Score=33.97 Aligned_cols=70 Identities=20% Similarity=0.469 Sum_probs=43.9
Q ss_pred CCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccc---ccc---chhhhhhhccccc-cceeccccchhHHH
Q 046228 34 CPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVR---VQA---RVCLCTSLKLNVL-DLIKLNIPKLSVNL 106 (121)
Q Consensus 34 CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d---~dA---AvCLCtaiKanvL-g~i~~~~p~~~l~l 106 (121)
|-....+|.-|.+.+.| |. .+|..+||.-+++|.+ ..+ +.|+|....+.-+ | | |.. ....
T Consensus 4 C~~v~~~L~pCl~y~~~------~~--~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~-i--n~~--~A~~ 70 (93)
T 1afh_A 4 CGQVASAIAPCISYARG------QG--SGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSG-L--NAG--NAAS 70 (93)
T ss_dssp SHHHHHHHGGGHHHHTT------SC--CSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTT-C--CHH--HHHH
T ss_pred hHHHHHhccCcHHHHcC------CC--CCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccC-c--CHH--HHHH
Confidence 54445578888888743 22 1455679999999853 222 6899975444434 4 3 333 3344
Q ss_pred HHHhcCCCCC
Q 046228 107 LLNQCRPKVP 116 (121)
Q Consensus 107 lln~CGk~~P 116 (121)
|=..||-.+|
T Consensus 71 LP~~C~v~~p 80 (93)
T 1afh_A 71 IPSKCGVSIP 80 (93)
T ss_dssp HHHHHHCCCS
T ss_pred HHHHcCCCCC
Confidence 6778998876
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=76.13 E-value=0.42 Score=32.06 Aligned_cols=68 Identities=24% Similarity=0.483 Sum_probs=41.7
Q ss_pred CCcccccchhhhhhhhhhhhhhcCCCCCCCCCCCCcccccccccc------cchhhhhhhccccc-cceeccccchhHHH
Q 046228 34 CPKNTLKLDACVDLLNGLAKVNLGELVPTPNHPCCSLLGDLVRVQ------ARVCLCTSLKLNVL-DLIKLNIPKLSVNL 106 (121)
Q Consensus 34 CP~d~lkL~vCa~vL~gl~~~~lg~~~~~~~~~CC~li~gL~d~d------AAvCLCtaiKanvL-g~i~~~~p~~~l~l 106 (121)
|-....+|.-|.+.+.| |. +|. +||.-+++|...- -+.|+|-.--++-+ | | |.. ....
T Consensus 4 C~~v~~~L~pCl~y~~~------~~---~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~-i--n~~--~A~~ 68 (91)
T 1t12_A 4 CGQVTSNLAPCLAYLRN------TG---PLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISG-I--NLG--KAAG 68 (91)
T ss_dssp HHHHHHHTHHHHHHHTT------SS---CCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTT-C--CHH--HHHH
T ss_pred hHHHHHhccCcHHHHcC------CC---ChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCC-c--Chh--HHHH
Confidence 43334567778887742 33 355 8999999986531 26899963222333 4 3 332 3445
Q ss_pred HHHhcCCCCC
Q 046228 107 LLNQCRPKVP 116 (121)
Q Consensus 107 lln~CGk~~P 116 (121)
|=..||-++|
T Consensus 69 LP~~C~v~~p 78 (91)
T 1t12_A 69 LPSTCGVNIP 78 (91)
T ss_dssp HHHHTTCCCS
T ss_pred HHHHcCCCCC
Confidence 7789999876
Done!