Query 046229
Match_columns 501
No_of_seqs 427 out of 2136
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 8.3E-47 1.8E-51 428.1 31.4 277 223-501 122-400 (1381)
2 PLN03130 ABC transporter C fam 100.0 2.3E-39 4.9E-44 384.7 47.5 281 216-501 219-499 (1622)
3 PLN03232 ABC transporter C fam 100.0 5.4E-39 1.2E-43 381.0 46.6 281 216-501 219-499 (1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 5.8E-38 1.3E-42 372.7 52.2 280 222-501 200-516 (1522)
5 TIGR01271 CFTR_protein cystic 100.0 2.1E-38 4.4E-43 375.6 35.5 277 223-501 3-280 (1490)
6 PTZ00243 ABC transporter; Prov 100.0 1.6E-30 3.4E-35 308.9 35.2 281 221-501 57-445 (1560)
7 PF00664 ABC_membrane: ABC tra 99.8 1.3E-17 2.8E-22 162.1 26.0 197 305-501 2-200 (275)
8 PRK11174 cysteine/glutathione 99.8 5.4E-17 1.2E-21 178.3 29.7 211 291-501 11-222 (588)
9 KOG0058 Peptide exporter, ABC 99.8 1.4E-16 3E-21 170.0 25.1 210 292-501 137-347 (716)
10 COG2274 SunT ABC-type bacterio 99.7 3.6E-15 7.7E-20 164.3 30.4 233 267-501 109-352 (709)
11 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 3.2E-15 6.9E-20 167.8 30.1 210 290-501 142-352 (710)
12 TIGR03375 type_I_sec_LssB type 99.7 4.4E-15 9.6E-20 166.2 30.3 209 290-501 135-344 (694)
13 TIGR01193 bacteriocin_ABC ABC- 99.7 6.3E-15 1.4E-19 165.4 30.0 235 265-501 109-354 (708)
14 TIGR01846 type_I_sec_HlyB type 99.7 1.7E-14 3.7E-19 161.5 30.4 210 290-501 127-337 (694)
15 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 2.1E-14 4.6E-19 160.5 29.7 209 291-501 125-334 (686)
16 TIGR00958 3a01208 Conjugate Tr 99.7 2E-14 4.4E-19 161.0 29.4 208 293-501 152-360 (711)
17 TIGR02868 CydC thiol reductant 99.7 2.3E-14 5.1E-19 155.5 28.6 208 293-501 4-213 (529)
18 TIGR02857 CydD thiol reductant 99.7 2.4E-14 5.2E-19 155.4 28.1 201 300-501 1-203 (529)
19 PRK11160 cysteine/glutathione 99.7 5.8E-14 1.2E-18 153.8 29.1 209 293-501 7-220 (574)
20 TIGR01192 chvA glucan exporter 99.6 9.7E-14 2.1E-18 152.3 29.9 205 293-501 10-215 (585)
21 TIGR02203 MsbA_lipidA lipid A 99.6 1.7E-13 3.7E-18 150.1 29.7 208 293-501 5-213 (571)
22 PRK11176 lipid transporter ATP 99.6 2.6E-13 5.6E-18 149.0 29.9 209 292-501 15-224 (582)
23 TIGR02204 MsbA_rel ABC transpo 99.6 2.5E-13 5.5E-18 148.9 29.2 210 291-501 7-217 (576)
24 TIGR01194 cyc_pep_trnsptr cycl 99.6 3.1E-13 6.6E-18 147.5 26.2 201 293-499 8-209 (555)
25 PRK10789 putative multidrug tr 99.6 3.9E-13 8.4E-18 147.2 26.4 192 310-501 3-196 (569)
26 PRK10790 putative multidrug tr 99.6 1.2E-12 2.6E-17 144.1 29.8 209 293-501 14-224 (592)
27 PRK13657 cyclic beta-1,2-gluca 99.6 2.1E-12 4.6E-17 142.0 29.5 204 294-501 11-215 (588)
28 PRK10522 multidrug transporter 99.5 2.4E-12 5.3E-17 140.3 27.4 198 292-496 3-201 (547)
29 TIGR01842 type_I_sec_PrtD type 99.5 2.2E-12 4.8E-17 140.5 26.0 197 298-501 2-200 (544)
30 PTZ00265 multidrug resistance 99.5 3.6E-12 7.8E-17 151.8 28.4 206 292-501 50-256 (1466)
31 COG1132 MdlB ABC-type multidru 99.5 3.8E-11 8.2E-16 131.6 28.7 204 293-501 7-211 (567)
32 TIGR00954 3a01203 Peroxysomal 99.4 4.6E-12 9.9E-17 140.7 19.7 207 294-501 83-298 (659)
33 PTZ00265 multidrug resistance 99.4 1.1E-10 2.4E-15 139.3 29.9 204 295-501 818-1042(1466)
34 TIGR00957 MRP_assoc_pro multi 99.3 2.4E-10 5.1E-15 137.6 27.7 210 291-501 953-1164(1522)
35 KOG0055 Multidrug/pheromone ex 99.3 3.2E-10 6.9E-15 128.4 26.8 204 297-501 659-867 (1228)
36 PLN03130 ABC transporter C fam 99.3 4.4E-10 9.6E-15 135.4 27.9 209 290-501 901-1112(1622)
37 COG4988 CydD ABC-type transpor 99.3 3.2E-09 6.9E-14 112.0 27.1 194 306-500 4-198 (559)
38 PLN03232 ABC transporter C fam 99.2 3.6E-09 7.8E-14 127.3 26.5 153 349-501 956-1109(1495)
39 PTZ00243 ABC transporter; Prov 99.1 1.2E-08 2.5E-13 123.0 27.3 134 368-501 1023-1157(1560)
40 TIGR01271 CFTR_protein cystic 99.1 3.3E-08 7.1E-13 119.0 28.9 143 359-501 941-1084(1490)
41 COG4987 CydC ABC-type transpor 99.0 2E-07 4.3E-12 97.4 27.3 209 292-501 7-218 (573)
42 PF13748 ABC_membrane_3: ABC t 98.9 8.8E-07 1.9E-11 84.0 25.0 179 294-485 2-181 (237)
43 KOG0054 Multidrug resistance-a 98.9 1.9E-07 4.1E-12 108.6 22.4 148 354-501 869-1017(1381)
44 KOG0057 Mitochondrial Fe/S clu 98.8 3.9E-07 8.4E-12 95.4 21.2 197 305-501 33-234 (591)
45 KOG0055 Multidrug/pheromone ex 98.8 3.5E-07 7.7E-12 104.2 20.4 201 301-501 24-230 (1228)
46 COG4615 PvdE ABC-type sideroph 98.5 1.3E-05 2.7E-10 81.2 20.1 199 293-498 4-203 (546)
47 COG4618 ArpD ABC-type protease 98.4 5E-05 1.1E-09 79.3 21.8 200 292-500 13-217 (580)
48 PF06472 ABC_membrane_2: ABC t 98.4 0.00018 4E-09 71.8 25.4 195 304-500 29-228 (281)
49 KOG0056 Heavy metal exporter H 98.0 1.8E-05 3.8E-10 82.0 8.2 193 305-501 218-418 (790)
50 PRK12369 putative transporter; 97.1 0.11 2.3E-06 53.1 21.8 130 307-442 22-157 (326)
51 COG5265 ATM1 ABC-type transpor 97.0 0.0052 1.1E-07 63.2 10.8 134 368-501 7-142 (497)
52 COG4178 ABC-type uncharacteriz 96.7 0.21 4.5E-06 54.5 20.5 189 310-500 55-264 (604)
53 PRK11098 microcin B17 transpor 96.7 0.37 7.9E-06 50.5 21.4 129 308-443 98-232 (409)
54 KOG0060 Long-chain acyl-CoA tr 96.6 0.08 1.7E-06 56.7 16.0 116 351-466 130-250 (659)
55 TIGR00958 3a01208 Conjugate Tr 95.3 5.2 0.00011 45.4 24.6 89 298-387 161-249 (711)
56 TIGR00954 3a01203 Peroxysomal 95.1 2.1 4.7E-05 48.0 20.2 145 346-490 138-283 (659)
57 PRK11174 cysteine/glutathione 94.9 7.4 0.00016 42.9 25.4 162 303-468 27-193 (588)
58 TIGR01842 type_I_sec_PrtD type 94.8 7.5 0.00016 42.5 24.3 89 302-391 10-98 (544)
59 TIGR02857 CydD thiol reductant 93.5 13 0.00029 40.3 23.8 84 303-387 8-92 (529)
60 TIGR01846 type_I_sec_HlyB type 92.3 24 0.00051 39.9 25.0 170 298-475 139-315 (694)
61 TIGR03375 type_I_sec_LssB type 92.2 24 0.00052 39.9 25.1 91 298-389 147-237 (694)
62 PF00664 ABC_membrane: ABC tra 91.9 11 0.00024 35.5 21.1 89 306-394 7-100 (275)
63 TIGR02868 CydC thiol reductant 91.8 22 0.00049 38.6 24.8 37 352-388 66-102 (529)
64 TIGR02204 MsbA_rel ABC transpo 91.1 27 0.00059 38.4 24.0 87 298-385 18-104 (576)
65 KOG0064 Peroxisomal long-chain 90.9 27 0.00058 37.9 20.9 191 306-498 122-320 (728)
66 COG4988 CydD ABC-type transpor 90.8 28 0.00061 37.9 22.8 128 340-467 41-168 (559)
67 PRK11176 lipid transporter ATP 89.9 35 0.00075 37.6 24.2 38 350-387 76-113 (582)
68 TIGR02203 MsbA_lipidA lipid A 89.8 35 0.00075 37.4 25.1 83 302-385 18-100 (571)
69 TIGR03797 NHPM_micro_ABC2 NHPM 88.9 45 0.00098 37.6 24.7 87 300-387 138-224 (686)
70 PRK10790 putative multidrug tr 88.4 45 0.00097 36.8 24.9 90 298-387 23-113 (592)
71 TIGR03796 NHPM_micro_ABC1 NHPM 86.9 60 0.0013 36.8 25.1 85 300-385 156-240 (710)
72 PRK10789 putative multidrug tr 86.2 58 0.0013 35.9 21.1 42 345-386 42-83 (569)
73 TIGR01193 bacteriocin_ABC ABC- 85.9 68 0.0015 36.3 24.7 86 301-387 159-244 (708)
74 TIGR01194 cyc_pep_trnsptr cycl 85.8 60 0.0013 35.6 19.5 29 359-387 73-101 (555)
75 PRK13657 cyclic beta-1,2-gluca 85.8 62 0.0013 35.7 24.1 28 358-385 75-102 (588)
76 PRK11160 cysteine/glutathione 80.3 99 0.0021 34.1 24.5 37 351-387 72-108 (574)
77 TIGR01192 chvA glucan exporter 77.5 1.2E+02 0.0026 33.5 24.5 82 301-386 22-103 (585)
78 PF14012 DUF4229: Protein of u 70.4 32 0.00069 26.6 7.5 35 446-480 34-68 (69)
79 KOG0058 Peptide exporter, ABC 62.4 2.7E+02 0.0059 31.4 25.4 110 303-412 152-268 (716)
80 COG2274 SunT ABC-type bacterio 61.7 2.9E+02 0.0063 31.5 24.6 188 298-493 154-347 (709)
81 PF05992 SbmA_BacA: SbmA/BacA- 47.5 3.2E+02 0.0069 27.7 22.1 94 340-440 53-147 (315)
82 COG1132 MdlB ABC-type multidru 45.5 4.4E+02 0.0096 28.8 23.4 76 308-386 24-99 (567)
83 PF10112 Halogen_Hydrol: 5-bro 40.3 3.1E+02 0.0067 25.5 10.4 12 481-492 84-95 (199)
84 PF14800 DUF4481: Domain of un 33.4 1.9E+02 0.0041 29.0 7.7 39 455-493 104-142 (308)
85 PF09946 DUF2178: Predicted me 30.6 1.9E+02 0.0041 24.5 6.5 13 475-487 51-63 (111)
86 COG4245 TerY Uncharacterized p 27.8 52 0.0011 30.7 2.6 42 224-265 164-205 (207)
87 PRK10522 multidrug transporter 26.6 8.6E+02 0.019 26.4 23.6 26 362-387 71-96 (547)
88 PF13829 DUF4191: Domain of un 23.3 5.4E+02 0.012 24.8 8.7 69 419-492 30-98 (224)
89 PF03653 UPF0093: Uncharacteri 22.7 5.4E+02 0.012 22.8 8.5 66 423-489 60-132 (147)
90 PF10911 DUF2717: Protein of u 22.7 3E+02 0.0065 21.7 5.5 25 253-278 11-35 (77)
91 PF04246 RseC_MucC: Positive r 22.4 90 0.002 27.2 3.2 71 395-466 50-121 (135)
92 PF10112 Halogen_Hydrol: 5-bro 21.1 6.3E+02 0.014 23.4 8.8 14 482-495 75-88 (199)
93 COG1981 Predicted membrane pro 20.9 5.7E+02 0.012 22.8 7.6 39 449-487 94-132 (149)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.3e-47 Score=428.15 Aligned_cols=277 Identities=31% Similarity=0.518 Sum_probs=263.1
Q ss_pred CCCCCcCCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhhhcCCCCCcchHHHHHHHHH
Q 046229 223 VTPYSNAGL--FSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTA 300 (501)
Q Consensus 223 ~~p~~~a~~--~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~ 300 (501)
.+|.++++. +|++||+|++|++++|+|++|+.+|+|+++++|+++.++++|++.|+++.++. .++|+++++++++|
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~--~~~psl~~al~~~f 199 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRS--GKKPSLLRALLRTF 199 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccc--cCCcHHHHHHHHHH
Confidence 345555555 99999999999999999999999999999999999999999999999876322 25789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 301 WKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVA 380 (501)
Q Consensus 301 ~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~ 380 (501)
|+.++..+++..+.+.+.+++|.+++.+++++++++...+.++.++++++++.++++++.+++++...+.|+|+|.++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~ 279 (1381)
T KOG0054|consen 200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALIS 279 (1381)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHH
Confidence 99999999999999999999999999999999887656678999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 046229 381 MVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNF 460 (501)
Q Consensus 381 ~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~ 460 (501)
+||+|+|+++...++++++|+|+|+|++|++++.++..++|.+|..|+|+++++++||..+|+++++|++++++++|+|.
T Consensus 280 ~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~ 359 (1381)
T KOG0054|consen 280 AIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNS 359 (1381)
T ss_pred HHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 461 PLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 461 ~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++|+++++|++.|+.+|+|++.++|+|+|||+||+||||+
T Consensus 360 ~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~ 400 (1381)
T KOG0054|consen 360 FLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEK 400 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHH
Confidence 99999999999999999999999999999999999999995
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.3e-39 Score=384.66 Aligned_cols=281 Identities=24% Similarity=0.405 Sum_probs=255.7
Q ss_pred ccccccCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhhhcCCCCCcchHHHH
Q 046229 216 KSEKANIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKA 295 (501)
Q Consensus 216 ~~~~~~~~~p~~~a~~~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~~~~~~~~~~~~~~~~l~~~ 295 (501)
+.++++..+||++||+||++||+|++|++++|++++|+.+|+|+++++|+++.++++|++.|+++.+ .++++++++
T Consensus 219 ~~~~~~~~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~----~~~~~l~~~ 294 (1622)
T PLN03130 219 ELPGGEQICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK----KPKPWLLRA 294 (1622)
T ss_pred CCcccCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc----cCCchHHHH
Confidence 3345667899999999999999999999999999999999999999999999999999999987642 234789999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 296 LFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMR 375 (501)
Q Consensus 296 l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir 375 (501)
+++++++.++..+++.++.+++.+++|++++.+++++.+++. ...++.++++++++.++.+++..++.+...+++.++|
T Consensus 295 l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1622)
T PLN03130 295 LNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875432 2446666666666666667777777777889999999
Q ss_pred HHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046229 376 SVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLV 455 (501)
Q Consensus 376 ~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~ 455 (501)
..++..+|+|.++++...+++.++|+++|+|++|++++++++..+|.+|..|+++++++++|+..+|+++++|+++++++
T Consensus 374 ~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~ 453 (1622)
T PLN03130 374 STLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLM 453 (1622)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 456 MLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 456 ~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++..+.++.++.+++.++.+|+|++.++|+++|||+||+||||+
T Consensus 454 ~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~ 499 (1622)
T PLN03130 454 FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWEN 499 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999995
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.4e-39 Score=381.04 Aligned_cols=281 Identities=25% Similarity=0.389 Sum_probs=259.1
Q ss_pred ccccccCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhhhcCCCCCcchHHHH
Q 046229 216 KSEKANIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKA 295 (501)
Q Consensus 216 ~~~~~~~~~p~~~a~~~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~~~~~~~~~~~~~~~~l~~~ 295 (501)
..|+++..+||+++|+||++||+|++|++++|++++|+.||+|+++++|+++.++++|++.|+++.+ .++++++++
T Consensus 219 ~~~~~~~~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~----~~~~~l~~~ 294 (1495)
T PLN03232 219 ALRGGENICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR----RPKPWLLRA 294 (1495)
T ss_pred cccccCCCCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc----cCCchHHHH
Confidence 4455667899999999999999999999999999999999999999999999999999999987642 235789999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 296 LFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMR 375 (501)
Q Consensus 296 l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir 375 (501)
+++++++.++..+++.++.+++.+++|++++.+++++++++. ...++.++++++++.++.+++.+++.+...+.+.++|
T Consensus 295 l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1495)
T PLN03232 295 LNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLR 373 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865432 2446777888888888888888888888899999999
Q ss_pred HHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046229 376 SVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLV 455 (501)
Q Consensus 376 ~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~ 455 (501)
..++..+|+|.++++...++++++|+++|+|++|+++++++...++.+|..|+++++++++++..+|+++++++++++++
T Consensus 374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~ 453 (1495)
T PLN03232 374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLL 453 (1495)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 456 MLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 456 ~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+|++..++|+.++.+++.++.+|+|.+.++|+++|||+||+|+||+
T Consensus 454 ~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~ 499 (1495)
T PLN03232 454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEK 499 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 8999999999999999999999999999999999999999999985
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.8e-38 Score=372.74 Aligned_cols=280 Identities=26% Similarity=0.443 Sum_probs=258.7
Q ss_pred CCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhhhcC-----------------
Q 046229 222 IVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVG----------------- 284 (501)
Q Consensus 222 ~~~p~~~a~~~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~~~~~~~~~----------------- 284 (501)
..+||++||++|+++|+|++|++++|++++|+.+|+|+++++++++.++++|++.|+++.++.
T Consensus 200 ~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1522)
T TIGR00957 200 NPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKP 279 (1522)
T ss_pred CCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 357999999999999999999999999999999999999999999999999999998752110
Q ss_pred --------------------CCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHH
Q 046229 285 --------------------NRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYV 344 (501)
Q Consensus 285 --------------------~~~~~~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~ 344 (501)
++.+++++++++++++|+.++..+++.++..++.+++|++++.+++++.+++.....++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~ 359 (1522)
T TIGR00957 280 KGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYF 359 (1522)
T ss_pred cccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHH
Confidence 112346899999999999999999999999999999999999999998665433345788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 345 MVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSW 424 (501)
Q Consensus 345 l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~ 424 (501)
++++++++.++.+++..++.+...+++.++|..++..+|+|+++++..++++.++|+++|+|++|++++.++...+|.+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~ 439 (1522)
T TIGR00957 360 YTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIW 439 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 425 LVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 425 ~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
..|++++++++++|..+|+++++++++++++++++..++++.++.+++.++.+|+|++.++|+++|||+||+|+||+
T Consensus 440 ~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~ 516 (1522)
T TIGR00957 440 SAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWEL 516 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.1e-38 Score=375.57 Aligned_cols=277 Identities=22% Similarity=0.328 Sum_probs=258.2
Q ss_pred CCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHHHHhhhhcCCCCCcchHHHHHHHHHhH
Q 046229 223 VTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNVLAADSVVGNRVTTLKLVKALFFTAWK 302 (501)
Q Consensus 223 ~~p~~~a~~~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 302 (501)
.+||++||++||++|+|++|++++|++++|+.||+|+++++++++.++++|++.|+++.. ++.+.+++++++++++++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA--SAKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999987532 123457899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 303 EIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQE-FKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAM 381 (501)
Q Consensus 303 ~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~-~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~ 381 (501)
.++..+++.++.+++.+++|++++.++++++.++. ....++.++++++++.++.+++.+++.|...+.+.++|..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999853321 22457888888999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046229 382 VYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFP 461 (501)
Q Consensus 382 Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~ 461 (501)
+|+|+++++...+++.++|+++|+|++|++++.+.+..+|.+|..|+++++++++||.++|+++++|+++++++++++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 462 LGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 462 l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++|+..+++++.++.+|+|++.++|+++|||+||+||||+
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~ 280 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEE 280 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence 9999999999999999999999999999999999999995
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-30 Score=308.94 Aligned_cols=281 Identities=22% Similarity=0.387 Sum_probs=248.5
Q ss_pred cCCCCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhhHHHHHHH----------HHhh----------
Q 046229 221 NIVTPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDSVMQGFPKFRNV----------LAAD---------- 280 (501)
Q Consensus 221 ~~~~p~~~a~~~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~a~~~~~~f~~~----------~~~~---------- 280 (501)
....||+++|||+++++.|++|++....+++|+++|+|+...+.|+.++-.++... |+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 45679999999999999999999999999999999999999998875554443322 2100
Q ss_pred -----------------------------------------hh--------------------------c----------
Q 046229 281 -----------------------------------------SV--------------------------V---------- 283 (501)
Q Consensus 281 -----------------------------------------~~--------------------------~---------- 283 (501)
.+ +
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence 00 0
Q ss_pred ---------CCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHH
Q 046229 284 ---------GNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKL 354 (501)
Q Consensus 284 ---------~~~~~~~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~l 354 (501)
.+.++..++++++++.+|+.++..++++++.+++.+++|++++.+++++++++.....++.++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 00022347999999999999999999999999999999999999999997654433446778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 355 VESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQ--SHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSL 432 (501)
Q Consensus 355 i~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~--~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iiv 432 (501)
+.+++.+++.+...+.+.++|.+|+..+|+|+++++....+ +.++|+++|+|++|++++.+++.++|.+|..|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 433 AMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 433 al~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++||..+||++++|+++++++++++.+++|++.+.+++.++.+|+|++.++|+++|||+||++|||+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~ 445 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEP 445 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999995
No 7
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.81 E-value=1.3e-17 Score=162.07 Aligned_cols=197 Identities=16% Similarity=0.207 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 305 VFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEF-KHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVY 383 (501)
Q Consensus 305 ~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~-~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy 383 (501)
++..++.++..++..+.|++++.++|.+.+++.. ....+.++..+++..++.........+...+.+.+++..++..+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999987655332 334555555555555666667777777788999999999999999
Q ss_pred HHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 046229 384 NKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPL 462 (501)
Q Consensus 384 ~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l 462 (501)
+|.++.+..+++++++|+++|++++|++++++... .+..+....+.+++++++++...+..+++.++..++..++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999987 55667777788888888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 463 GRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 463 ~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.|+.++..++.+++.+++.+.++|.++|+|+||.|++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~ 200 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAED 200 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhH
Confidence 999999999999999999999999999999999999984
No 8
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=5.4e-17 Score=178.28 Aligned_cols=211 Identities=14% Similarity=0.052 Sum_probs=180.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 291 KLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVA 370 (501)
Q Consensus 291 ~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l 370 (501)
+.++.+.+.+++.++...++.++..++....|++++.++|.+..++......+.++.+++++.++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999997642211122234445555666677888888888899999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046229 371 GIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATF 449 (501)
Q Consensus 371 ~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl 449 (501)
+.++...++..+|+|.++++..+++++++|+++|++++|++++++++. .+..++...+..++++++++...++.+++.+
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 170 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILL 170 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886 6778888888888888888887787777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 450 SATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 450 ~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+.+++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 222 (588)
T PRK11174 171 GTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGE 222 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccH
Confidence 7777777777888999999999999999999999999999999999999985
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.4e-16 Score=170.04 Aligned_cols=210 Identities=19% Similarity=0.187 Sum_probs=191.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 292 LVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 292 l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~ 371 (501)
.++.+.+..|+.+..+.++.++.+...+..|.++.+++|.+...+.......-.+..+.+..++++++.....+..+..+
T Consensus 137 rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~ 216 (716)
T KOG0058|consen 137 RLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAG 216 (716)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999988662212233344566677778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFS 450 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~ 450 (501)
.++...+|..+|+++++...++++++.+||++|+++.|++.+.+-+. .+.+...+.++.+.++.+|+...+..+++.++
T Consensus 217 ~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i 296 (716)
T KOG0058|consen 217 ERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999887 88899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 451 ATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 451 ~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.+++++.+...+++++++..++.+++..+-.+...|.+.+||+||+|+.|+
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~ 347 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEE 347 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999984
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.72 E-value=3.6e-15 Score=164.28 Aligned_cols=233 Identities=13% Similarity=0.153 Sum_probs=203.3
Q ss_pred hhhHHHHHHHHHhhh-----h-----cCCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCcc
Q 046229 267 MQGFPKFRNVLAADS-----V-----VGNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQ 336 (501)
Q Consensus 267 ~~~~~~f~~~~~~~~-----~-----~~~~~~~~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~ 336 (501)
....++|.+.|.... . ...++...+.++..+..+++.+...++.+++..+++++.|++.+.++|.+...+
T Consensus 109 ~l~~~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~ 188 (709)
T COG2274 109 RLSLEEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA 188 (709)
T ss_pred EcCHHHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 334567888886210 0 111222445677778889999999999999999999999999999999886443
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHH
Q 046229 337 EFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDF 416 (501)
Q Consensus 337 ~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~ 416 (501)
+....+.+++++.+..+++.++.....+...+++.|+...+...+|+|++++|..+++++++||++++++ |.++|.++
T Consensus 189 -~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~f 266 (709)
T COG2274 189 -SRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREF 266 (709)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHH
Confidence 3455677888888889999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 046229 417 SW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILK 495 (501)
Q Consensus 417 ~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK 495 (501)
+. .....+.+.+..++.+++|+.+.+..+++.++.+++.+.+..++.+..++..++.++...++.+.+.|.++||++||
T Consensus 267 lt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK 346 (709)
T COG2274 267 LTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVK 346 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHH
Confidence 98 77788888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCC
Q 046229 496 LQGWEM 501 (501)
Q Consensus 496 ~~awE~ 501 (501)
..+-|.
T Consensus 347 ~~~~e~ 352 (709)
T COG2274 347 ALAAEP 352 (709)
T ss_pred HhhhhH
Confidence 998874
No 11
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.72 E-value=3.2e-15 Score=167.81 Aligned_cols=210 Identities=14% Similarity=0.153 Sum_probs=181.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 290 LKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQV 369 (501)
Q Consensus 290 ~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~ 369 (501)
.+.++..++.+++.+....+++++..++.++.|++++.++|.+...+. ....+.++++++++.++..++.....+...+
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (710)
T TIGR03796 142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRR 220 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888888999999999999999999999999997754322 2233445555666677788888888999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046229 370 AGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIAT 448 (501)
Q Consensus 370 l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~g 448 (501)
++.++...++..+|+|+++++..+++++++|+++|+++.| +++++++. .+..++...+.+++.+++++...++.+++.
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988 78998876 667778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++.+++...+...+.++..+..++.++..+++.+.+.|.++|+++||.+++|+
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 352 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLES 352 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCH
Confidence 88888888888999999999999999999999999999999999999999984
No 12
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.72 E-value=4.4e-15 Score=166.19 Aligned_cols=209 Identities=18% Similarity=0.183 Sum_probs=176.4
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 290 LKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQV 369 (501)
Q Consensus 290 ~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~ 369 (501)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+.... .....+.++++++++.++..++.....+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999999999999999999999875332 22233445555555666778888888899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046229 370 AGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIAT 448 (501)
Q Consensus 370 l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~g 448 (501)
.+.++...++..+|+|.+++|..+ .++++|++++++ +|++.+++++. .+...+...+.+++.+++++...++.+++.
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999987 788999999999 69999999876 455555666666666777788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++.+++.+++...+.++.++..++.++..+++.+.+.|.++|+++||.+++|+
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 344 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEG 344 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccH
Confidence 88888888888999999999999999999999999999999999999999984
No 13
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.71 E-value=6.3e-15 Score=165.35 Aligned_cols=235 Identities=15% Similarity=0.135 Sum_probs=187.2
Q ss_pred chhhhHHHHHHHHHhhh---h-----c--CCCCCcchHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcC
Q 046229 265 SVMQGFPKFRNVLAADS---V-----V--GNRVTTLKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNG 334 (501)
Q Consensus 265 ~a~~~~~~f~~~~~~~~---~-----~--~~~~~~~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~ 334 (501)
+.....++|++.|.... . + +++....+.+..+++.+++.+....++.++..++.++.|++++.++|.+..
T Consensus 109 ~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~ 188 (708)
T TIGR01193 109 ITKISKEDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIP 188 (708)
T ss_pred CEEecHHHHHhhCCCEEEEEEecccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555677888775421 0 0 011122234555677888888888999999999999999999999998754
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHH
Q 046229 335 EQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVG 414 (501)
Q Consensus 335 ~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~ 414 (501)
.. .....+.++++++++.++..++.....+...+.+.++...++..+|+|.++++..+++++++|+++++++ |.+++.
T Consensus 189 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~ 266 (708)
T TIGR01193 189 HK-MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSII 266 (708)
T ss_pred cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHH
Confidence 32 2223344555556666777888888888999999999999999999999999999999999999999998 999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046229 415 DFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRI 493 (501)
Q Consensus 415 ~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~ 493 (501)
+++. .....+...+.+++.+++++...++.+++.++++++...+...+.++.++..++.++..+++.+.+.|.++|+++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ 346 (708)
T TIGR01193 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIET 346 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9876 555556666666777777887888888877777778888888899999999999999999999999999999999
Q ss_pred HHHhcCCC
Q 046229 494 LKLQGWEM 501 (501)
Q Consensus 494 IK~~awE~ 501 (501)
||.+++|+
T Consensus 347 ik~~~~e~ 354 (708)
T TIGR01193 347 IKSLTSEA 354 (708)
T ss_pred HHHhcccH
Confidence 99999984
No 14
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.69 E-value=1.7e-14 Score=161.49 Aligned_cols=210 Identities=13% Similarity=0.087 Sum_probs=177.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 290 LKLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQV 369 (501)
Q Consensus 290 ~~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~ 369 (501)
.+.++..++.+++.+....++.++..++.++.|++++.++|.+.... .....+.++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GLSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888999999999999999999999999999875322 22334445555666667778888888899999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046229 370 AGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIAT 448 (501)
Q Consensus 370 l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~g 448 (501)
++.++...++..+|+|.++++..+++++++|++++++ +|++.+++++. .+...+...+..++.+++++...++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 59999999876 566666666666666778888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++++...+...+.++.++..++.++..+++.+.+.|.++|+++||.++.|+
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 337 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEP 337 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCH
Confidence 77778888888888999999999999999999999999999999999999874
No 15
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.68 E-value=2.1e-14 Score=160.52 Aligned_cols=209 Identities=14% Similarity=0.153 Sum_probs=177.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 291 KLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVA 370 (501)
Q Consensus 291 ~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l 370 (501)
++++..++.+++.+....+++++..++.++.|++++.++|.+.... .....+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DRSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556788888999999999999999999999999999875332 223345556666667777888888888999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046229 371 GIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATF 449 (501)
Q Consensus 371 ~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl 449 (501)
+.++...++..+|+|.++++..+++++++|+++++++ |++.+++++. .+.......+..++++++++...++.+++.+
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 8999999876 4555555555566777888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 450 SATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 450 ~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++++..++...+.++.++..++.++..+++.+.+.|.++|+++||.++.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 334 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAEN 334 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccH
Confidence 8777888888889999999999999999999999999999999999999884
No 16
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.68 E-value=2e-14 Score=160.99 Aligned_cols=208 Identities=13% Similarity=0.092 Sum_probs=173.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGI 372 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ 372 (501)
++.+.+.+++.+....++.++..++.+..|++++.++|.+..+.. .......+..+++..++..++.....+.....+.
T Consensus 152 l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 230 (711)
T TIGR00958 152 LLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG-PPALASAIFFMCLLSIASSVSAGLRGGSFNYTMA 230 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888899999999999999999999999998864322 1222222333334445556666666777778888
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 373 KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 373 rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
++...++..+|+|.++.+..+++++++|+++|++++|++.+++.+. .+..++...+++++++++++...+..+++.++.
T Consensus 231 ~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~ 310 (711)
T TIGR00958 231 RINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLIN 310 (711)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887 677788888899989898988888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++...+...+.++.++..++.++..++..+.+.|.++|+++||.|++|+
T Consensus 311 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~ 360 (711)
T TIGR00958 311 LPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEE 360 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 77777888889999999999999999999999999999999999999984
No 17
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.67 E-value=2.3e-14 Score=155.52 Aligned_cols=208 Identities=12% Similarity=0.002 Sum_probs=162.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGI 372 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ 372 (501)
+..+.+.+++.++...++.++..++..+.|++++.++|.....+. ....+....++++..++..+......+...+.+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888999999999999999999999997653321 1111111222223445667777777888889999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 373 KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 373 rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
++...++..+|+|.++++..+++++++|+++|++++|++++++.+. .+..++...+.+++++++++...+..+++.++.
T Consensus 83 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 162 (529)
T TIGR02868 83 RSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAG 162 (529)
T ss_pred HHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 566677777778888888888788777766655
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPL-GRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l-~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++.++...+ .+..++..++..+..++..+.+.|.++|+++||.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~ 213 (529)
T TIGR02868 163 LLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALD 213 (529)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChH
Confidence 55544444344 444466677888889999999999999999999999984
No 18
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.67 E-value=2.4e-14 Score=155.43 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=166.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhc-CccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 300 AWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLN-GEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVL 378 (501)
Q Consensus 300 ~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~-~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L 378 (501)
+|+.+...+++.++..++....|++++.++|.+. ++. .......++.++++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889999999999999999999999873 322 22233444555556667778888888899999999999999
Q ss_pred HHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 046229 379 VAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVML 457 (501)
Q Consensus 379 ~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~ 457 (501)
+..+|+|.++++..+++++++|+++|++++|++++++++. .+..++...+..++++++++...++.+++.++..++...
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876 577777777777777777777777766666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 458 VNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 458 i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+...+.++.++..++.++..+++.+.+.|.++|+++||.|+.|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 203 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAK 203 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccH
Confidence 56677888888899999999999999999999999999999984
No 19
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=5.8e-14 Score=153.79 Aligned_cols=209 Identities=15% Similarity=0.097 Sum_probs=168.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhc-Cccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLN-GEQE--FKHKGYVMVSTFFAAKLVESLSFTQWIFRLQV 369 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~-~~~~--~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~ 369 (501)
++.+.+.+++.++++.++.++..++....|++++.++|... .+.. ........++++.+..++..++.....+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (574)
T PRK11160 7 FLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHD 86 (574)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33467888888999999999999999999999999999653 2210 00111112333444556677888888889999
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046229 370 AGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIAT 448 (501)
Q Consensus 370 l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~g 448 (501)
.+.++...++..+|+|.++++..+++++++|++++++++|++++++++. .+..+....+.+++++++++...+..+++.
T Consensus 87 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 166 (574)
T PRK11160 87 ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTL 166 (574)
T ss_pred HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886 566777788888888888888888777755
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 449 FSATVLVML-VNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 449 l~~~~i~~~-i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++.++..+ +...+.++.++..++.++..++..+.+.|.++|+++||.|+.|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 220 (574)
T PRK11160 167 GGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAED 220 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChH
Confidence 444443333 44666788888889999999999999999999999999999884
No 20
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.65 E-value=9.7e-14 Score=152.28 Aligned_cols=205 Identities=7% Similarity=0.076 Sum_probs=167.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGI 372 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ 372 (501)
++.+++.+++.++...++.++..++..+.|++++.++|.+.+++. . ..+.+..++..++..+......+...++..
T Consensus 10 l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (585)
T TIGR01192 10 ALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---V-LPTLALWAGFGVFNTIAYVLVAREADRLAH 85 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678888999999999999999999999999999998754321 1 111112222334455555666677788888
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 373 KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 373 rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
+++..++..+|+|.++++.++++++++|++++++++|++.+++++. .+......++.+++++++++...+..+++.++.
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 165 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998876 566667777778777788888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++...+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~ 215 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIE 215 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccH
Confidence 77777788888888999999999999999999999999999999999873
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.63 E-value=1.7e-13 Score=150.15 Aligned_cols=208 Identities=12% Similarity=0.105 Sum_probs=179.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGI 372 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ 372 (501)
++.+.+.+++.+++..++.++..++....|+.++.+++....... ....+.++.+++++.++..++.....+...+.+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 83 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSN 83 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999999999999999999999999986644321 2223334445556667777888888889999999
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 373 KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 373 rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
++...++..+|+|.++.+.+.+.+.+.|+++++++.|++++++++. .+..++...+.+++++++++...++.+++.+++
T Consensus 84 ~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~ 163 (571)
T TIGR02203 84 KVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVM 163 (571)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999886 677788888889999999998888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.++.+.+...+.++.++..++..+..+++.+.++|.++|+++||.++.|+
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~ 213 (571)
T TIGR02203 164 LPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQA 213 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccH
Confidence 78888888899999999999999999999999999999999999999874
No 22
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.62 E-value=2.6e-13 Score=149.04 Aligned_cols=209 Identities=7% Similarity=0.042 Sum_probs=172.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 292 LVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 292 l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~ 371 (501)
.++.+++.+++.++...++.++..++..+.|++++.++|.+.+++.. .....++..+++..++..++.....+...+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 93 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR-SVLKWMPLVVIGLMILRGITSFISSYCISWVS 93 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888899999999999977643221 12222333344455666777777778888899
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFS 450 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~ 450 (501)
.++...++..+|+|.++++.+.++++++|++++++++|++++++... .+..++..++.+++.+++++...++.+++.++
T Consensus 94 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 173 (582)
T PRK11176 94 GKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIV 173 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999776 67778888888889988888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 451 ATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 451 ~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++..++.....++.++..++.++..++..+...|.++|+++||.|+.|+
T Consensus 174 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~ 224 (582)
T PRK11176 174 IAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCH
Confidence 777777778888999999999999999999999999999999999999984
No 23
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.62 E-value=2.5e-13 Score=148.94 Aligned_cols=210 Identities=15% Similarity=0.116 Sum_probs=170.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 291 KLVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVA 370 (501)
Q Consensus 291 ~l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l 370 (501)
+.++.+++.+++.+....++.++..++.+..|++++.++|.+..... ......++.++++..++..+......+...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS-SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888889999999999999999999999997432221 11222233333444455566667778888999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 046229 371 GIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATF 449 (501)
Q Consensus 371 ~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl 449 (501)
+.++...++..+|+|.++++..++++.+.|++++++++|++++.+++. .+..++...+.+++++++++...++.+++.+
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 165 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVL 165 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876 5667777778888888888877777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 450 SATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 450 ~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+.+++...+...+.++.++..++.++..++..+.+.|.++|+++||.++.|+
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~ 217 (576)
T TIGR02204 166 LAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHED 217 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCH
Confidence 6666666667778899999999999999999999999999999999999884
No 24
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.59 E-value=3.1e-13 Score=147.50 Aligned_cols=201 Identities=16% Similarity=0.040 Sum_probs=162.1
Q ss_pred HHHHHH-HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFF-TAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 293 ~~~l~~-~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~ 371 (501)
+..+++ .+++.+++..++.++..++....|++++.+++....... ...+. +.+..++..++.....+...+.+
T Consensus 8 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 81 (555)
T TIGR01194 8 ILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ--GSLFS----FGGLCLLALLFRIGADIFPAYAG 81 (555)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--hHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444778 889999999999999999999999999988874311110 11111 11223344556667777888999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
.++...++..+|+|.++++..+++++++|++++++++|++.+++++..+..+....+.+++++++++...+..+++.++.
T Consensus 82 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~ 161 (555)
T TIGR01194 82 MHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISA 161 (555)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877666677777778888888888888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcC
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGW 499 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~aw 499 (501)
+++.+.+.....++.++..++.++..++..+.+.|.++|++++|.|+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~ 209 (555)
T TIGR01194 162 IIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGI 209 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHH
Confidence 666666677777788888888999999999999999999999999986
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.59 E-value=3.9e-13 Score=147.18 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=151.7
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 046229 310 LALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTL 389 (501)
Q Consensus 310 l~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrL 389 (501)
+.++..++..+.|++++.++|.+.++.......+.++++++++.++..++.....+...+.+.++...++..+|+|.+++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566777888999999999987543212223344455555566677777777788888899999999999999999999
Q ss_pred ChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 390 SCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILH-KSLGLASIATFSATVLVMLVNFPLGRLQV 467 (501)
Q Consensus 390 s~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~-~~lg~~al~gl~~~~i~~~i~~~l~k~~~ 467 (501)
+.++++++++|++++++++|++.+++... .+..++..++..++++++++ ...+..+++.++++++...+...+.++.+
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997765 55666666666666655553 44555667666666777777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 468 KFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 468 ~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+..++.++..++..+.+.|.++|+++||.|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 8889999999999999999999999999999984
No 26
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.58 E-value=1.2e-12 Score=144.08 Aligned_cols=209 Identities=11% Similarity=0.086 Sum_probs=167.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQE-FKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~-~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~ 371 (501)
++.+.+.+++.++...++.++..++....|+++..++|.+..... .......+++++++..++..++.+...+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888899999999999999999999997643221 1111122233344555567777788888889999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFS 450 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~ 450 (501)
.++...++..+|+|.++.+..++++.++|+++|++++|++++.+++. .+..++...+.+++++++++...++.+++.++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~ 173 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999877 55666777777777777777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 451 ATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 451 ~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++.+++.....++.++..++.++..++..+...|.++|+++||.|+.|+
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~ 224 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQA 224 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhH
Confidence 666666666777777888888888999999999999999999999999873
No 27
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.56 E-value=2.1e-12 Score=142.00 Aligned_cols=204 Identities=9% Similarity=0.070 Sum_probs=161.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 294 KALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIK 373 (501)
Q Consensus 294 ~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~r 373 (501)
..+++.+++.+.+..++.++..++.+..|+++..++|.+..+. . ...++..+++..++..+......+...++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK13657 11 LQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D---IFPLLAAWAGFGLFNIIAGVLVARHADRLAHR 86 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888899999999999999999999999876432 1 11122222222333344445556667788888
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046229 374 MRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSAT 452 (501)
Q Consensus 374 ir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~ 452 (501)
++..++..+|+|.+++|...+++.++|++++++++|++.+.+... .+.......+..++.+++++...++.+++.++++
T Consensus 87 ~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 166 (588)
T PRK13657 87 RRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLG 166 (588)
T ss_pred HHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765 5556666666666666667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 453 VLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 453 ~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++...+...+.++.++.+++.++..++..+.+.|.++|+++||.|+.|+
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~ 215 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIE 215 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchH
Confidence 7777788888999999999999999999999999999999999999874
No 28
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.54 E-value=2.4e-12 Score=140.28 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=161.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhh-hhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 292 LVKALFFTAWKEIVFTAVLALIYTLANYV-GPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVA 370 (501)
Q Consensus 292 l~~~l~~~~~~~l~l~~il~ll~~~~~~~-~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l 370 (501)
+++.+++.+++.++...++.++..++.+. .|++.+.++|.+.+. ......+++.+++. .++.....+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLL----MAVTLGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 56778888999999999999999999887 477888888866431 11111111111111 23444566777788
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046229 371 GIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFS 450 (501)
Q Consensus 371 ~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~ 450 (501)
+.++...++..+|+|.++++..+++++++|+++|++++|++.+.+++..+..++...+.+++++++++...+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999876667778888888999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 046229 451 ATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKL 496 (501)
Q Consensus 451 ~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~ 496 (501)
++++...+...+.++.++..++.++..+++.+.++|.++|++++++
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~ 201 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTL 201 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhc
Confidence 7777777888889999999999999999999999999999999974
No 29
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.53 E-value=2.2e-12 Score=140.54 Aligned_cols=197 Identities=10% Similarity=0.035 Sum_probs=153.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSV 377 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~ 377 (501)
+.+++.++...++.++..++..+.|++++.++|.+.... .....+.++++++++.++..++.....+...+.+.++...
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSG-SVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888889999999999999999999999765322 1223344555666667778888888899999999999999
Q ss_pred HHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 046229 378 LVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWR--MHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLV 455 (501)
Q Consensus 378 L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~--~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~ 455 (501)
++..+|+|.++++.. ..|+..+.+.+|++++++++.. +..+...++.++. +++++...++.+++.++.+++.
T Consensus 81 lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 81 LNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999873 2356788889999999998763 3344455554443 3556666777776666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 456 MLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 456 ~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
..+.....++.++..++.++..+++.+.+.|.++|+++||.|+.|+
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 200 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMG 200 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchH
Confidence 6666677788888889999999999999999999999999999874
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.52 E-value=3.6e-12 Score=151.78 Aligned_cols=206 Identities=10% Similarity=-0.042 Sum_probs=175.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 292 LVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 292 l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~ 371 (501)
+++-..+.+++.++++.+++++..++..+.|+++..++|.+..++ ....++..++++.++..++.....+...+++
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 125 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE----NVNDIIFSLVLIGIFQFILSFISSFCMDVVT 125 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444567778889999999999999999999999999764221 1122334444555666777788888999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFS 450 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~ 450 (501)
.++...++..+|+|+++++.+++++.++|++++.++.|++.+++.+. .+..++..++.+++++++++...+..+++.++
T Consensus 126 ~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~ 205 (1466)
T PTZ00265 126 TKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876 67788888899999999999999989998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 451 ATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 451 ~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++++.+...+.++.++..++.++..++..+.+.|.++|||+||.|+.|+
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 256 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEK 256 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCH
Confidence 888888888889999998999999999999999999999999999999874
No 31
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.46 E-value=3.8e-11 Score=131.55 Aligned_cols=204 Identities=17% Similarity=0.153 Sum_probs=165.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGI 372 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ 372 (501)
++.+.+ ++ .+....++.++...+....|.++..++|.+... ......+...+++..++..++.....+...+.+.
T Consensus 7 l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 81 (567)
T COG1132 7 LLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQ 81 (567)
T ss_pred HHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445 77 888888999999999999999999999988611 1222333333444444566666777777788889
Q ss_pred HHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 373 KMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDS-WLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 373 rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l-~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
++...++..+|+|.++++..+++++++|++++++++|++.+++.+...... ...++.++..+++++...+..+++.++.
T Consensus 82 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 161 (567)
T COG1132 82 KIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLI 161 (567)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998865443 3367777777788887777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.+++......+.++.++..++..+..++..+.+.|.++|+++||.|+.|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~ 211 (567)
T COG1132 162 LPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAED 211 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhH
Confidence 67777777778877799999999999999999999999999999999874
No 32
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.44 E-value=4.6e-12 Score=140.68 Aligned_cols=207 Identities=12% Similarity=-0.032 Sum_probs=152.6
Q ss_pred HHHHHHHhH-----HHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccch-hh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 294 KALFFTAWK-----EIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEF-KH-KGYVMVSTFFAAKLVESLSFTQWIFR 366 (501)
Q Consensus 294 ~~l~~~~~~-----~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~-~~-~~~~l~~~l~~~~li~~l~~~~~~~~ 366 (501)
..+.+++|+ .++...++.++.+.+.+..|++.+.++|.+.+++.. .. ..+.+++++++..++..+..+...+.
T Consensus 83 ~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 162 (659)
T TIGR00954 83 LKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKEL 162 (659)
T ss_pred HHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555665 577888888999999999999999999988654321 11 12223333444445555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-H
Q 046229 367 LQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGL-A 444 (501)
Q Consensus 367 ~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~-~ 444 (501)
..++..++...++...|+|....+..++++ ++|++++++++|++.+.+.+. .+..++..++.++++++.|+..++| .
T Consensus 163 ~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l 241 (659)
T TIGR00954 163 KLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVG 241 (659)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 555555555555555555555555555554 689999999999999999887 5667788888888888888875555 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 445 SIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 445 al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++.++..++...+...+.++..+..++.++..++..+..+|.++|+++||+|+-|+
T Consensus 242 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~ 298 (659)
T TIGR00954 242 PAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNK 298 (659)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHH
Confidence 556666777888888999999999999999999999999999999999999999774
No 33
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.41 E-value=1.1e-10 Score=139.28 Aligned_cols=204 Identities=11% Similarity=0.002 Sum_probs=149.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 295 ALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKM 374 (501)
Q Consensus 295 ~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ri 374 (501)
..++.+++.++++.++.++..++..+.|+++..+++.+............+++.+++..++..++.....+...+++.++
T Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~ 897 (1466)
T PTZ00265 818 REIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKV 897 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888899999999999999999999966432211122334555556666677777888888999999999
Q ss_pred HHHHHHHHHHHHhcCChhhhcc--CChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 375 RSVLVAMVYNKCLTLSCQAKQS--HTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 375 r~~L~~~Iy~K~LrLs~~~~~~--~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
...++..+|+|+++++..++++ +++|++++++++|++.+++++. .+..+...++.+++++++++...+..+++.++
T Consensus 898 ~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~- 976 (1466)
T PTZ00265 898 EKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTG- 976 (1466)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999975 8899999999999999999876 56666777777777777777766655554332
Q ss_pred HHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPLGRLQVKFQ-DK-----------------LMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~-~~-----------------~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++.++...+.++.+... ++ ..+..++..+.++|.++|||+||.|+.|+
T Consensus 977 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~ 1042 (1466)
T PTZ00265 977 --TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLED 1042 (1466)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchH
Confidence 22233333333322211 11 11224455779999999999999999874
No 34
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.34 E-value=2.4e-10 Score=137.56 Aligned_cols=210 Identities=11% Similarity=0.077 Sum_probs=145.5
Q ss_pred hHHHHHHHHHhHHH-HHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 291 KLVKALFFTAWKEI-VFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQV 369 (501)
Q Consensus 291 ~l~~~l~~~~~~~l-~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~ 369 (501)
+.++.+++..+... +..+++.++..++....|+.++...+............+ +..++++..++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~-~~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSL-RLSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666554332 233344455566677788888777653211110111111 1222333334444455555666677
Q ss_pred HHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 046229 370 AGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIAT 448 (501)
Q Consensus 370 l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~g 448 (501)
.+.+....++..+|+|.++.+..+++++++|+|+|++++|++.+++.+. .+..+...++.++.++++++...++.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999877 667777888888888877776666655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++++...+.....+..++.++...+.++...+..+|.++|+++||.|++|+
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~ 1164 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQE 1164 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHH
Confidence 44444444455555566666667777788888999999999999999999974
No 35
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=3.2e-10 Score=128.44 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=169.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 297 FFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEF--KHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKM 374 (501)
Q Consensus 297 ~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~--~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~ri 374 (501)
.++.|+-++++.+.+++.....-+..+++..++.....++.+ ......+++++++..++..++...+.|.....|.++
T Consensus 659 ~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~L 738 (1228)
T KOG0055|consen 659 NKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKL 738 (1228)
T ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777767777777777766533322 222233677777777788888888888889999999
Q ss_pred HHHHHHHHHHHHhcCChhhhc--cCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 375 RSVLVAMVYNKCLTLSCQAKQ--SHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 375 r~~L~~~Iy~K~LrLs~~~~~--~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
...+|.+.|+|+++.+..+++ +++ |.+.+++.+|+..++..+. .+..++.....+++++++-+...|..++++++.
T Consensus 739 t~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~ 817 (1228)
T KOG0055|consen 739 TKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLAT 817 (1228)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875 456 9999999999999999987 566777777788888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.+++....+...+.+.....+..+..++-.+...|+++|||+||.++.|+
T Consensus 818 ~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 818 FPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999998874
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=99.32 E-value=4.4e-10 Score=135.37 Aligned_cols=209 Identities=7% Similarity=-0.030 Sum_probs=140.4
Q ss_pred chHHHHHHHHHhHHH--HHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 290 LKLVKALFFTAWKEI--VFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRL 367 (501)
Q Consensus 290 ~~l~~~l~~~~~~~l--~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~ 367 (501)
++.++.+++..++.. ...+++.++..++....++.++...|.....+. ....+..++++..++..++.....+..
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~---~~~~~~~i~~~l~~~~~i~~~~~~~~~ 977 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH---GPLFYNLIYALLSFGQVLVTLLNSYWL 977 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666544322 233334445556666777777776664322111 111223334444455556666666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046229 368 QVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASI 446 (501)
Q Consensus 368 ~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al 446 (501)
.+.+.+....++..+|+|+++.+..+++++++|+|+|+++.|++.+.+... .+..+....++++.+++++.....+..+
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999876 5667777777777776666555443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 447 ATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 447 ~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+.+.+.+++..+.....+..++.++.....++...+..+|.++|+++||.|++|+
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence 3333233333333444455555666666777888899999999999999999863
No 37
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.2e-09 Score=112.00 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 306 FTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNK 385 (501)
Q Consensus 306 l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K 385 (501)
+..++..+..++...+.+++...++.+..++. ....+.++++++++.++++++.........+.+.+++..+|..+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777788888888888877655432 34455667778888889999999889999999999999999999999
Q ss_pred HhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 046229 386 CLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGR 464 (501)
Q Consensus 386 ~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k 464 (501)
..+++..+.++.++|++.+++..-++.++.++. ++++...+.+--.+.++.++...+.++++-+++++++.+.++.+++
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~ 162 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL 162 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 7887776666555555666666777888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCC
Q 046229 465 LQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWE 500 (501)
Q Consensus 465 ~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE 500 (501)
+-++..++.++.........-|-|+|+.++|.|+..
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~ 198 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRT 198 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 999999999999999999999999999999999865
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=99.19 E-value=3.6e-09 Score=127.27 Aligned_cols=153 Identities=11% Similarity=0.012 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 046229 349 FFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVL 427 (501)
Q Consensus 349 l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~p 427 (501)
.++..++..++.....+...+.+.+....++..+++|+++.+..+++++++|+++|++++|++.+++.+. .+..+....
T Consensus 956 y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 956 YALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555556667788899999999999999999999999999999999999999999999876 566667777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 428 LQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 428 l~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++++.+++++.....+..++.+.+.+++........+..++.++...+.++...+.++|.++|+++||.|++|+
T Consensus 1036 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1036 WQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 77777666665554433332222222222233333344455666677888888899999999999999999863
No 39
>PTZ00243 ABC transporter; Provisional
Probab=99.14 E-value=1.2e-08 Score=123.01 Aligned_cols=134 Identities=10% Similarity=-0.011 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046229 368 QVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASI 446 (501)
Q Consensus 368 ~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al 446 (501)
...+.+....++..+|+++++.+..+++++++|+|+|+++.|++.+.+.+. .+..++...+.++.++++++...++..+
T Consensus 1023 ~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~ 1102 (1560)
T PTZ00243 1023 YEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV 1102 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556888999999999999999999999999999999999999877 6667777778888777777766654444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 447 ATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 447 ~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+.+.+.++...+...+.+..++.++.....++...+.++|.++|+++||.|++|+
T Consensus 1103 ~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1103 ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 3333333344445556666677777777888889999999999999999999874
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.10 E-value=3.3e-08 Score=118.98 Aligned_cols=143 Identities=13% Similarity=0.092 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 046229 359 SFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLIL 437 (501)
Q Consensus 359 ~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL 437 (501)
+.....+...+.+.+....++..+++++++.+..+++..++|+|+|+++.|++.+.+.+. .+..++...+.+++.++++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i 1020 (1490)
T TIGR01271 941 LGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVV 1020 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556777888899999999999999999999999999999999999999999877 6777777888888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 438 HKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 438 ~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
....++..++.+.+++++..+..+..+..++.++.....++...+...|.++|+.+||.|++|+
T Consensus 1021 ~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~ 1084 (1490)
T TIGR01271 1021 SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQS 1084 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcH
Confidence 7777776554444444444455555666666777778888889999999999999999999984
No 41
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2e-07 Score=97.43 Aligned_cols=209 Identities=15% Similarity=0.101 Sum_probs=153.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 292 LVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQE-FKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVA 370 (501)
Q Consensus 292 l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~-~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l 370 (501)
.++.+.+ +|+.+.++.+++++....+...-.+-..++..-.-.+. .....+..+.++=+..+.++...+.-...++..
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444444 77788888888777777666666666666654321111 112233344444456677888888888899999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHhHHHHHH
Q 046229 371 GIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSW-LVLLQVSLAMLIL-HKSLGLASIAT 448 (501)
Q Consensus 371 ~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~-~~pl~iival~lL-~~~lg~~al~g 448 (501)
..++-+.+|..+|+|....+..-..+.++||+.|++..|++.+++.+.....-+ .+.+-+.+..+.+ +...+.+.+++
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987443333 3333333333333 44455555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+...+..+++...+.+.-++..++..+.+..--+...|.++|+...+.||.++
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~ 218 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAED 218 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHH
Confidence 66666666677777788888889999999999999999999999999999764
No 42
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.92 E-value=8.8e-07 Score=84.01 Aligned_cols=179 Identities=12% Similarity=0.034 Sum_probs=144.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 294 KALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIK 373 (501)
Q Consensus 294 ~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~r 373 (501)
++++|.|++++..+..+.+.+.++....|++++.-||.+.+++. .....++.+.+ +.............|...|
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~--~~~~~~~~~~l----~~~~igaaRR~~DTRvf~r 75 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV--WQALMYAALVL----LMWAIGAARRIYDTRVFSR 75 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH--HHHHHHHHHHH----HHHHHhhhhHHHhhHHHHH
Confidence 57889999999999999999999999999999999999876642 23333333332 3333444566778889999
Q ss_pred HHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 046229 374 MRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSAT 452 (501)
Q Consensus 374 ir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~ 452 (501)
++..+...++.+.- .++.+.+++..+++ =..++-||+. .++.++.+.++++.+.++|....-|.++++++..
T Consensus 76 Iy~~la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l 148 (237)
T PF13748_consen 76 IYAELAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLIL 148 (237)
T ss_pred HHHHHhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887754 35567788888885 5667778887 8899999999999999999999989988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 453 VLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATS 485 (501)
Q Consensus 453 ~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~ 485 (501)
+++..+...+.++..+...+..+..++.++.++
T Consensus 149 ~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i~ 181 (237)
T PF13748_consen 149 ALFLLILPRFARRNYRLYRRLNNRLEKEVDIIE 181 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHccHhh
Confidence 888888899999999898888888888776554
No 43
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=1.9e-07 Score=108.59 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 046229 354 LVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSL 432 (501)
Q Consensus 354 li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iiv 432 (501)
+..+++.....+.....+.+.-..|-..++++.+|-|+.+++..++|.|+|+.+.|.+.+.+... .+..+....++++.
T Consensus 869 ~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~ 948 (1381)
T KOG0054|consen 869 VASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLG 948 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444444556666677888889999999999999999999999999999999999999999877 66677788888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 433 AMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 433 al~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
+++++-...++..++.+.+.+++..+..+..+-.+...+-....++=-.+..+|.++|+-+||+|+.|+
T Consensus 949 ~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 949 ILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 888888888888777777777777777777676677777777778888899999999999999999874
No 44
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.9e-07 Score=95.43 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccc-h--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 305 VFTAVLALIYTLANYVGPYLIDSFVKYLNGEQE-F--KHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAM 381 (501)
Q Consensus 305 ~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~-~--~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~ 381 (501)
+..+.+.+..-......|.+++..+|.+...+. + .......+.+.+++.+..++++-...+...++..++.......
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444567888899999999998852211 1 1223344556667777788888888888899999999999999
Q ss_pred HHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHH
Q 046229 382 VYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLAS-IATFSATVLVMLVN 459 (501)
Q Consensus 382 Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~a-l~gl~~~~i~~~i~ 459 (501)
+|++.+.++.+++.+.++|++.+.|..-...|.++.. .+..++...+.+.++...+++..|... ++.+..+.....+.
T Consensus 113 vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~T 192 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFT 192 (591)
T ss_pred HHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeE
Confidence 9999999999999999999999999999999999987 677888888999999999999999764 45555666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 460 FPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 460 ~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
...+.+-.+++++..++.++-.+..-|.|.|-.+||.|+-|+
T Consensus 193 i~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~ 234 (591)
T KOG0057|consen 193 IVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEE 234 (591)
T ss_pred EeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHH
Confidence 788888889999999999999999999999999999999885
No 45
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.79 E-value=3.5e-07 Score=104.21 Aligned_cols=201 Identities=11% Similarity=0.024 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHH---HHHHhhhhcCcc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 301 WKEIVFTAVLALIYTLANYVGPYL---IDSFVKYLNGEQ--EFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMR 375 (501)
Q Consensus 301 ~~~l~l~~il~ll~~~~~~~~P~l---l~~lid~l~~~~--~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir 375 (501)
+.++++..+-.+...+-+...|++ ...+.|.+.... ...++..-++..++...+...++...+.....+.+.|..
T Consensus 24 ~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~ 103 (1228)
T KOG0055|consen 24 RFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQT 103 (1228)
T ss_pred hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555555653 455555553322 111122223333333333333344444555667788888
Q ss_pred HHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 046229 376 SVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVL 454 (501)
Q Consensus 376 ~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i 454 (501)
..+|....+..||.+.++++.+++|++...|++|+++|+|.+. .+..++.....++.++++-+...|..+++.+...++
T Consensus 104 ~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pl 183 (1228)
T KOG0055|consen 104 ARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPL 183 (1228)
T ss_pred HHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999998 566677777778888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 455 VMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 455 ~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.......+++.+.+...+.+++..+--+...|.+.+||+|-+|+-|+
T Consensus 184 i~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 184 IAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 99999999999999999999999999999999999999999998774
No 46
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.52 E-value=1.3e-05 Score=81.18 Aligned_cols=199 Identities=13% Similarity=0.005 Sum_probs=146.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 046229 293 VKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAK-LVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 293 ~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~-li~~l~~~~~~~~~~~l~ 371 (501)
...++|.+++.++....+++....... .++..+-+++.+.+........+.++++... +.+.++ ......+|
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is----~lg~t~~g 76 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLIS----QLGLTTLG 76 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 445678888888777666665554443 3333333443322211111122222222222 222233 33445566
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
......++..+.+|.+.-|.+..++.+++.++..++.|+..|.-.+..++.+....+-.+.+..+|.+..+...+.+++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66677777888899999999999999999999999999999996666788888888888889999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQG 498 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~a 498 (501)
+++.+..+.....+..+...+..+.-|+..+..+.+++|-|.+|.+.
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r 203 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNR 203 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheech
Confidence 88889999999999999999999999999999999999999988753
No 47
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.41 E-value=5e-05 Score=79.29 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=148.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 292 LVKALFFTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAG 371 (501)
Q Consensus 292 l~~~l~~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~ 371 (501)
...+....+++.++..++++.+..++.+.+|+.+-++.|.+.... +......+.++....+++..+++....+...|++
T Consensus 13 ~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~-s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig 91 (580)
T COG4618 13 LLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSR-SVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIG 91 (580)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888999999999999999999999999999886543 2344566667777788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 046229 372 IKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWR-----MHDSWLVLLQVSLAMLILHKSLGLASI 446 (501)
Q Consensus 372 ~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~-----~~~l~~~pl~iival~lL~~~lg~~al 446 (501)
.++...+...+|.-+.+.+..........+. +. |.+++.+|... +.+..-.|+.+.++ +++.-.+|+.++
T Consensus 92 ~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~---Lr-DL~qvR~Fltg~g~~A~fDaPW~P~yl~v~-fl~Hp~lG~~a~ 166 (580)
T COG4618 92 ERLDRQLNGPVFAASFSAPLLRRGSGDGLQP---LR-DLDQVRQFLTGTGLTAFFDAPWMPLYLAVI-FLFHPWLGLIAL 166 (580)
T ss_pred HHHHHHhccHHHHHHHhhHHhhcCCCccccc---hh-hHHHHHHHHcCCCcchhcCCchHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999998666654432222333 33 99999999872 33443455554433 344445777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCC
Q 046229 447 ATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWE 500 (501)
Q Consensus 447 ~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE 500 (501)
+|.++.+.+..+|-..+ ++-.++..+...++....+-..+|..+|+..|..
T Consensus 167 ~ga~iLv~la~ln~~~t---~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~ 217 (580)
T COG4618 167 AGAIILVVLALLNERAT---RKPLKEASEASIRANQLADATLRNAEVIEAMGML 217 (580)
T ss_pred HHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHHHhhhHHHHHHhccc
Confidence 77665555555555444 4455677788888888999999999999988753
No 48
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.40 E-value=0.00018 Score=71.80 Aligned_cols=195 Identities=12% Similarity=0.079 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 304 IVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVY 383 (501)
Q Consensus 304 l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy 383 (501)
++....+.+..+.++......-+.+.+.+++.+. ...+...+..++..+..+.+.....|...+++.+.|.-|...+.
T Consensus 29 l~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~--~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~ 106 (281)
T PF06472_consen 29 LLVLLLLLLARVYLSVRINFWNGDFYNALQQKDL--QAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLH 106 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777788888888888988876543 33344444455555666777778888999999999999999999
Q ss_pred HHHhcCChhhhccCCh---hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Q 046229 384 NKCLTLSCQAKQSHTS---GEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLASI-ATFSATVLVMLV 458 (501)
Q Consensus 384 ~K~LrLs~~~~~~~ss---GeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~al-~gl~~~~i~~~i 458 (501)
++-++-..-++-.... ...=.+++.|+++..+... -...+...++.++...+.|+...|+..+ +.++..++...+
T Consensus 107 ~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~ 186 (281)
T PF06472_consen 107 DRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLI 186 (281)
T ss_pred HHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 9999888544433333 3566799999999998776 5567788888999999999999998877 556667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCC
Q 046229 459 NFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWE 500 (501)
Q Consensus 459 ~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE 500 (501)
...+++...+...+..+...+--.....+.++-..|=+|+-|
T Consensus 187 ~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge 228 (281)
T PF06472_consen 187 THWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGE 228 (281)
T ss_pred HHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCc
Confidence 888888888877777777666666667777777777777665
No 49
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.00 E-value=1.8e-05 Score=81.98 Aligned_cols=193 Identities=18% Similarity=0.152 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 046229 305 VFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLV------ESLSFTQWIFRLQVAGIKMRSVL 378 (501)
Q Consensus 305 ~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li------~~l~~~~~~~~~~~l~~rir~~L 378 (501)
+...++.++.-+.....|.+.+.++|.+..+....+. ....-.+.+++ .++......|...++......++
T Consensus 218 ~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~---~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~i 294 (790)
T KOG0056|consen 218 VFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYS---LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREI 294 (790)
T ss_pred HHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHH---HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHH
Confidence 4445556667778888999999999988755432222 22222222222 24556666666667777777889
Q ss_pred HHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHH
Q 046229 379 VAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWR-MHDSWLVLLQVSLAMLILHK-SLGLASIATFSATVLVM 456 (501)
Q Consensus 379 ~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~-~~~l~~~pl~iival~lL~~-~lg~~al~gl~~~~i~~ 456 (501)
...+|+|...+|...+-++.+||+...|..-.+.+. +..+ ..++.-..+-+++++++.+. ...|-.++.++.+.+..
T Consensus 295 e~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~ 373 (790)
T KOG0056|consen 295 ETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYC 373 (790)
T ss_pred HHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988777777 4443 33444455566666654444 45567777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 457 LVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 457 ~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
.+...++..-.++++++..+-.+.-..-.+.+-|..++|.|+.|+
T Consensus 374 ~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~ 418 (790)
T KOG0056|consen 374 YVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAED 418 (790)
T ss_pred heeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchh
Confidence 777778888888888888888787788899999999999999875
No 50
>PRK12369 putative transporter; Reviewed
Probab=97.14 E-value=0.11 Score=53.10 Aligned_cols=130 Identities=9% Similarity=-0.051 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhhhhcCcc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 307 TAVLALIYTLANYVGPYLIDSFVKYLNGEQ-----EFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAM 381 (501)
Q Consensus 307 ~~il~ll~~~~~~~~P~ll~~lid~l~~~~-----~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~ 381 (501)
..++.+..+..+......-+.+.|.+++.+ .+....+.....+.+...+.........|..++++.+-|..|...
T Consensus 22 ~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~ 101 (326)
T PRK12369 22 ILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFS 101 (326)
T ss_pred HHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666778888876531 122333333333444444555566678888999999999999999
Q ss_pred HHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 046229 382 VYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLG 442 (501)
Q Consensus 382 Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg 442 (501)
+.++-+..+.. .+ +. =.+++.|+++..+... ....++..++.++.-..+|+...|
T Consensus 102 ~l~~wl~~~~~-iD-NP----DQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~ 157 (326)
T PRK12369 102 YLKFWRNKRDN-IE-GS----SQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSD 157 (326)
T ss_pred HHHHHhcCCCC-CC-Cc----cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999985421 11 22 2689999999998776 556788888889888999998664
No 51
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0052 Score=63.21 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH-HH
Q 046229 368 QVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGL-AS 445 (501)
Q Consensus 368 ~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~-~a 445 (501)
...+......+....|.|+.+|+..++.++.+|.+---+..-.+.|+...+ .+..+....+++....+++++.-|| .+
T Consensus 7 s~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~ 86 (497)
T COG5265 7 SPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFA 86 (497)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHH
Confidence 345555666778889999999999999999999999888888889999887 4556777888888888888887665 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCCC
Q 046229 446 IATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWEM 501 (501)
Q Consensus 446 l~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE~ 501 (501)
++.++.+.++..+.......--...++..++-.+-...-.+.|-|-.++|.|+-|+
T Consensus 87 ~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~ 142 (497)
T COG5265 87 LTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEE 142 (497)
T ss_pred HHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchh
Confidence 66666666666666666666666666666666666678889999999999999885
No 52
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.70 E-value=0.21 Score=54.54 Aligned_cols=189 Identities=12% Similarity=0.019 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 046229 310 LALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTL 389 (501)
Q Consensus 310 l~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrL 389 (501)
..++.+-.++..-.--+.+.+.++..+. ...|..+.++.+...+.........|..+++..+.|.-|...+.+|-+..
T Consensus 55 ~~l~~v~~~v~~~~w~~~~~~aL~~~d~--~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~ 132 (604)
T COG4178 55 LILLSVRGQVLLNDWNGPFYNALARRDL--AAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDP 132 (604)
T ss_pred HHHHHhheeeeeHhhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444445667777665432 22333333333333333344445788899999999999999999999998
Q ss_pred ChhhhccCCh-----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH---------------HHHH
Q 046229 390 SCQAKQSHTS-----GEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGLA---------------SIAT 448 (501)
Q Consensus 390 s~~~~~~~ss-----GeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~~---------------al~g 448 (501)
...++..... -..=.+++.|+....+... ....+..+.++++.-..+||...|.. ..+.
T Consensus 133 ~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~ 212 (604)
T COG4178 133 RRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAV 212 (604)
T ss_pred CchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHH
Confidence 8655433221 2345789999988888665 44566777778888888888665532 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCC
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRILKLQGWE 500 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~awE 500 (501)
++.++....+...++|...+...+..+.-.+--....-+-++-..|-+|+-|
T Consensus 213 i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 213 IIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCc
Confidence 2222333334445556555555444444444444444555566666666655
No 53
>PRK11098 microcin B17 transporter; Reviewed
Probab=96.66 E-value=0.37 Score=50.52 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhcC----ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 308 AVLALIYTLANYVGPYLIDSFVKYLNG----EQE-FKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMV 382 (501)
Q Consensus 308 ~il~ll~~~~~~~~P~ll~~lid~l~~----~~~-~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~I 382 (501)
.++.+..+-.+......-+.+.|.+++ ++. +....+..........++.........|..+++..+-|..|....
T Consensus 98 l~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~y 177 (409)
T PRK11098 98 IFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYY 177 (409)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555677777664 211 223334444444444445555666778889999999999999999
Q ss_pred HHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Q 046229 383 YNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSW-RMHDSWLVLLQVSLAMLILHKSLGL 443 (501)
Q Consensus 383 y~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~-~~~~l~~~pl~iival~lL~~~lg~ 443 (501)
.++-++++. .+ .-=.+++.|+++..+... ....++..++.++.-+.+|+...|.
T Consensus 178 l~~Wl~~r~--ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~ 232 (409)
T PRK11098 178 MAHWQKLRH--IE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAH 232 (409)
T ss_pred HHHHHhcCC--CC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 998887651 11 145688899999888766 5567888888888888999987664
No 54
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=96.60 E-value=0.08 Score=56.75 Aligned_cols=116 Identities=13% Similarity=-0.009 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHH---HHHHHHHHHHHHHHHH-HHHHHHH
Q 046229 351 AAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVI---NFMTIDAQRVGDFSWR-MHDSWLV 426 (501)
Q Consensus 351 ~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIi---nlms~D~~~I~~~~~~-~~~l~~~ 426 (501)
++....+.+.....|...-+..|.|..+..-++++.++-..-++-++..+.|. .+++.|+++..+.... ...+...
T Consensus 130 ~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a 209 (659)
T KOG0060|consen 130 LLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKA 209 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhcc
Confidence 33344455666677888889999999999999999987665444333333333 4788899998887664 4567788
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Q 046229 427 LLQVSLAMLILHKSLGLASIATFSA-TVLVMLVNFPLGRLQ 466 (501)
Q Consensus 427 pl~iival~lL~~~lg~~al~gl~~-~~i~~~i~~~l~k~~ 466 (501)
|+-++...+.++...||...+.+.. .++-.++|..+.+-+
T Consensus 210 ~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI 250 (659)
T KOG0060|consen 210 PFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPI 250 (659)
T ss_pred ceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccch
Confidence 8889999999999988876654433 333445555544433
No 55
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.33 E-value=5.2 Score=45.36 Aligned_cols=89 Identities=12% Similarity=0.101 Sum_probs=59.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSV 377 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~ 377 (501)
+.+...++..++..++.....+....++..+.+.-.. +......+.++++.++..++..+......+...++..++|..
T Consensus 161 ~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~ 239 (711)
T TIGR00958 161 PWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP-PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIRED 239 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777888877743222 222233344444445555666666677788889999999999
Q ss_pred HHHHHHHHHh
Q 046229 378 LVAMVYNKCL 387 (501)
Q Consensus 378 L~~~Iy~K~L 387 (501)
+...+.+.-.
T Consensus 240 l~~~ll~~~~ 249 (711)
T TIGR00958 240 LFRSLLRQDL 249 (711)
T ss_pred HHHHHHcCCH
Confidence 9999987754
No 56
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=95.05 E-value=2.1 Score=48.01 Aligned_cols=145 Identities=13% Similarity=0.023 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 346 VSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWL 425 (501)
Q Consensus 346 ~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~ 425 (501)
....++..++.+++.....|...++..++|..+...+.++.++.-..+.-..-.+..=|.++.=++.++.+...+.....
T Consensus 138 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~ 217 (659)
T TIGR00954 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYS 217 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 33445556667778888888999999999999999999999885322222233444667777666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046229 426 VLLQVSLAMLILHKSLGL-ASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRN 490 (501)
Q Consensus 426 ~pl~iival~lL~~~lg~-~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~g 490 (501)
..+.-++.++.....+.. ......++++++.|+...+.+...+...+..+...+..+..+..++.
T Consensus 218 ~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e 283 (659)
T TIGR00954 218 NLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSR 283 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 776666665544443443 55555566677778888888888776666666666666655555543
No 57
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.95 E-value=7.4 Score=42.95 Aligned_cols=162 Identities=12% Similarity=0.054 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 303 EIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMV 382 (501)
Q Consensus 303 ~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~I 382 (501)
.++..++..++..+..+....++..++..-.+..........++++.++..++..+..........++..++|..+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 106 (588)
T PRK11174 27 SILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKL 106 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555666655421111111222233444444455556666666777788889999999999998
Q ss_pred HHHHhc----CChhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HH
Q 046229 383 YNKCLT----LSCQAKQSHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLV-ML 457 (501)
Q Consensus 383 y~K~Lr----Ls~~~~~~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~-~~ 457 (501)
.+.-.. .+.......-+.++-+. .. .+...+..+...+..++..++.++.+...++...++.++++++. ..
T Consensus 107 l~~~~~~~~~~~~g~l~s~~~~dv~~i-~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~ 182 (588)
T PRK11174 107 QQLGPAWIQGKPAGSWATLVLEQVEDM-HD---FYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMAL 182 (588)
T ss_pred HhcCchhhccCCHHHHHHHHHhhHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876543 33333222222232222 11 12222222222222344445556666666666666554443333 33
Q ss_pred HHHHHHHHHHH
Q 046229 458 VNFPLGRLQVK 468 (501)
Q Consensus 458 i~~~l~k~~~~ 468 (501)
......+..++
T Consensus 183 ~~~~~~~~~~~ 193 (588)
T PRK11174 183 VGMGAADANRR 193 (588)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 58
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.84 E-value=7.5 Score=42.51 Aligned_cols=89 Identities=8% Similarity=-0.002 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 302 KEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAM 381 (501)
Q Consensus 302 ~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~ 381 (501)
..++...+..++..+..+....++..++..-... ........++++.++..++..+..........++..++|..+...
T Consensus 10 ~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 88 (544)
T TIGR01842 10 IVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVP-TLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAA 88 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666677777777666322222 222233344444455555666666677778889999999999999
Q ss_pred HHHHHhcCCh
Q 046229 382 VYNKCLTLSC 391 (501)
Q Consensus 382 Iy~K~LrLs~ 391 (501)
+.++-.....
T Consensus 89 ll~~~~~~~~ 98 (544)
T TIGR01842 89 SFSATLRRGK 98 (544)
T ss_pred HhcCcccCcc
Confidence 9987765443
No 59
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=93.50 E-value=13 Score=40.31 Aligned_cols=84 Identities=13% Similarity=-0.011 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHh-hhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 303 EIVFTAVLALIYTLANYVGPYLIDSFV-KYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAM 381 (501)
Q Consensus 303 ~l~l~~il~ll~~~~~~~~P~ll~~li-d~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~ 381 (501)
.++.+++..++.....+....++..+. +.-.... .......++++.++..++..+..........++..++|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 86 (529)
T TIGR02857 8 LGLLGALGALLIIAQAWLLARVIDGLISAGEPLAE-LLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAA 86 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666776664 3211121 22223334444444555666666677778889999999999999
Q ss_pred HHHHHh
Q 046229 382 VYNKCL 387 (501)
Q Consensus 382 Iy~K~L 387 (501)
+.+.-.
T Consensus 87 l~~~~~ 92 (529)
T TIGR02857 87 VAALGP 92 (529)
T ss_pred HHhCCc
Confidence 987644
No 60
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.27 E-value=24 Score=39.93 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=89.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSV 377 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~ 377 (501)
+.+...++.+++..++..+..+....++..++..-..+ ........++++.++..++..+-.........++..+++..
T Consensus 139 ~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~-~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 217 (694)
T TIGR01846 139 KQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLS-TLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGAR 217 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777788888888777432222 22222334444444445556666667777888899999999
Q ss_pred HHHHHHHHHhc----CChhhhccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 378 LVAMVYNKCLT----LSCQAKQSH--TSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 378 L~~~Iy~K~Lr----Ls~~~~~~~--ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
+...+.+.-.. .+......+ ...++.+.++ ......+.++...++. ++.++++-..+++..++++++
T Consensus 218 ~~~~l~~l~~~~f~~~~~g~~~~rl~d~~~i~~~~~------~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~~ 290 (694)
T TIGR01846 218 LYRHLLGLPLGYFESRRVGDTVARVRELEQIRNFLT------GSALTVVLDLLFVVVF-LAVMFFYSPTLTGVVIGSLVC 290 (694)
T ss_pred HHHHHHcCCHHHcCCCCHHHHHHHhhhHHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99888875433 333222111 2222222222 1122223333333333 334455555666666555444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHH
Q 046229 452 TVL-VMLVNFPLGRLQVKFQDKLMK 475 (501)
Q Consensus 452 ~~i-~~~i~~~l~k~~~~~~~~~~~ 475 (501)
.++ .........+..++.+++..+
T Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (694)
T TIGR01846 291 YALLSVFVGPILRKRVEDKFERSAA 315 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 344444555555544444333
No 61
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.22 E-value=24 Score=39.88 Aligned_cols=91 Identities=9% Similarity=-0.053 Sum_probs=58.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSV 377 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~ 377 (501)
+.+...++..++..++..+..+....++..++..-... ........++++.++..++..+..........++..+++..
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 225 (694)
T TIGR03375 147 PLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFE-TLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAK 225 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777777777778887776433222 22223333444444455566666667778888999999999
Q ss_pred HHHHHHHHHhcC
Q 046229 378 LVAMVYNKCLTL 389 (501)
Q Consensus 378 L~~~Iy~K~LrL 389 (501)
+...+.+.-+..
T Consensus 226 ~~~~ll~l~~~~ 237 (694)
T TIGR03375 226 LFERVLGLRMEA 237 (694)
T ss_pred HHHHHhCCCccc
Confidence 999988765543
No 62
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=91.95 E-value=11 Score=35.52 Aligned_cols=89 Identities=13% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhhcCc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 306 FTAVLALIYTLANYVGPYLIDSFVKYLNGE-QEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYN 384 (501)
Q Consensus 306 l~~il~ll~~~~~~~~P~ll~~lid~l~~~-~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~ 384 (501)
...+..+...+..+....+++.+.+.-... ..........+....+.................++..+++..+...+.+
T Consensus 7 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 86 (275)
T PF00664_consen 7 LSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLR 86 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666666666655443331 2222223333333233333333333345566667777777777777776
Q ss_pred HHhc----CChhhh
Q 046229 385 KCLT----LSCQAK 394 (501)
Q Consensus 385 K~Lr----Ls~~~~ 394 (501)
.-.+ .+.+..
T Consensus 87 ~~~~~~~~~~~g~l 100 (275)
T PF00664_consen 87 LPYSYFDKNSSGEL 100 (275)
T ss_dssp SHHHHHHHS-HHHH
T ss_pred hhhhhhhhhccccc
Confidence 6666 555444
No 63
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.77 E-value=22 Score=38.59 Aligned_cols=37 Identities=8% Similarity=-0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 046229 352 AKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLT 388 (501)
Q Consensus 352 ~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~Lr 388 (501)
..+...+..........++..++|..+...+.+.-..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ 102 (529)
T TIGR02868 66 RAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALA 102 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 3344445555566677788889999999998876553
No 64
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=91.15 E-value=27 Score=38.35 Aligned_cols=87 Identities=10% Similarity=-0.032 Sum_probs=51.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSV 377 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~ 377 (501)
+.....++..++..++.....+....++..++..-... ........++++.++..+....-.........++...+|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 96 (576)
T TIGR02204 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSG-LLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRA 96 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566667777777777777788887755322211 12222222333333333444444456667788899999999
Q ss_pred HHHHHHHH
Q 046229 378 LVAMVYNK 385 (501)
Q Consensus 378 L~~~Iy~K 385 (501)
+...+.+.
T Consensus 97 l~~~l~~~ 104 (576)
T TIGR02204 97 VFAHLISL 104 (576)
T ss_pred HHHHHHcC
Confidence 99988765
No 65
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=90.93 E-value=27 Score=37.88 Aligned_cols=191 Identities=16% Similarity=0.094 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 306 FTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNK 385 (501)
Q Consensus 306 l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K 385 (501)
...++-+..+++++...-+=++++..+..++ ...-.|.+.-.+ +..+-.++.+..-.|...+++...|..+..-.|++
T Consensus 122 ~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~-~r~F~~~LlkW~-liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~ 199 (728)
T KOG0064|consen 122 AQSFFLISRTFLSLFVAKLDGQLVKNIVRKR-GRQFLWDLLKWF-LIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDM 199 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHHHHHHHHH-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666667666666677777664332 122233333222 22334456666678888999999999999999999
Q ss_pred HhcCChhhhccCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 046229 386 CLTLSCQAKQSHTSGEV---INFMTIDAQRVGDFSWRMHDSWLVL-LQVSLAMLILHKSLGLASIATFSATVLVMLVNFP 461 (501)
Q Consensus 386 ~LrLs~~~~~~~ssGeI---inlms~D~~~I~~~~~~~~~l~~~p-l~iival~lL~~~lg~~al~gl~~~~i~~~i~~~ 461 (501)
.+.-..-++-....|.+ =|.++.|+....+....+..-..-| +-+++..+.|....+-....+.....+...+...
T Consensus 200 Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~ 279 (728)
T KOG0064|consen 200 YLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAF 279 (728)
T ss_pred HhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHH
Confidence 98766433333333333 4568889888888777655444444 4566666666665443222221111111122222
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc
Q 046229 462 LGR----LQVKFQDKLMKSKGKRMKATSEILRNMRILKLQG 498 (501)
Q Consensus 462 l~k----~~~~~~~~~~~~~D~R~~~~~E~L~gIr~IK~~a 498 (501)
+-| +..+...+........-..=+.++.|-..|-+|+
T Consensus 280 iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~ 320 (728)
T KOG0064|consen 280 ILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYG 320 (728)
T ss_pred HHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhc
Confidence 222 2333333333333333344556666666776665
No 66
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=90.80 E-value=28 Score=37.92 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 046229 340 HKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWR 419 (501)
Q Consensus 340 ~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~ 419 (501)
.....+++++++=.++.-.-....+....++...+|..+-..+++...+-......+.-..-++.=+..=-.-...+...
T Consensus 41 ~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq 120 (559)
T COG4988 41 PLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ 120 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666677778888899999999999999999998643333222222223333333333456678887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 420 MHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQV 467 (501)
Q Consensus 420 ~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~ 467 (501)
.......|+.++++++...+..+...++.+..+++++.+....++...
T Consensus 121 ~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s 168 (559)
T COG4988 121 MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDAS 168 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 778888999999999999999999999888888888776666655443
No 67
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=89.91 E-value=35 Score=37.59 Aligned_cols=38 Identities=11% Similarity=-0.015 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046229 350 FAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCL 387 (501)
Q Consensus 350 ~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~L 387 (501)
++..++..+..........+....+|..+...+.+.-.
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~ 113 (582)
T PRK11176 76 ILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPV 113 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33344444444555666777888888888888876443
No 68
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=89.80 E-value=35 Score=37.43 Aligned_cols=83 Identities=8% Similarity=-0.095 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 302 KEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAM 381 (501)
Q Consensus 302 ~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~ 381 (501)
..++..++..++.....+....++...+..-..+ ........++++.++..++..+..........++..++|..+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 96 (571)
T TIGR02203 18 LAGVAMILVAATESTLAALLKPLLDDGFGGRDRS-VLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEK 96 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444322222 222223333334444445555556667777888888899998888
Q ss_pred HHHH
Q 046229 382 VYNK 385 (501)
Q Consensus 382 Iy~K 385 (501)
+++.
T Consensus 97 ~~~~ 100 (571)
T TIGR02203 97 LLGL 100 (571)
T ss_pred HHcC
Confidence 8753
No 69
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=88.95 E-value=45 Score=37.60 Aligned_cols=87 Identities=6% Similarity=-0.032 Sum_probs=54.3
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 300 AWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLV 379 (501)
Q Consensus 300 ~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~ 379 (501)
+...++.+++..++..+..+....++..++..-.. +........++++.++..++..+-.........++..+++..+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (686)
T TIGR03797 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR-SLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVW 216 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677777777777777777743222 22222334444444444455555556677778888899999998
Q ss_pred HHHHHHHh
Q 046229 380 AMVYNKCL 387 (501)
Q Consensus 380 ~~Iy~K~L 387 (501)
..+.+.-.
T Consensus 217 ~~ll~~~~ 224 (686)
T TIGR03797 217 DRLLRLPV 224 (686)
T ss_pred HHHHcCCH
Confidence 88886543
No 70
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=88.36 E-value=45 Score=36.84 Aligned_cols=90 Identities=12% Similarity=-0.045 Sum_probs=51.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEF-KHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRS 376 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~-~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~ 376 (501)
+.+...++..++..++.....+....+++.++..-..+... ....+.+++..++..++.............++..++|.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 102 (592)
T PRK10790 23 KPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRT 102 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666777665422211111 22233333333334444555555666777788888888
Q ss_pred HHHHHHHHHHh
Q 046229 377 VLVAMVYNKCL 387 (501)
Q Consensus 377 ~L~~~Iy~K~L 387 (501)
.+...+.+.-.
T Consensus 103 ~l~~~l~~~~~ 113 (592)
T PRK10790 103 DVMDAALRQPL 113 (592)
T ss_pred HHHHHHHcCCH
Confidence 88888886543
No 71
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=86.95 E-value=60 Score=36.75 Aligned_cols=85 Identities=8% Similarity=-0.076 Sum_probs=48.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 300 AWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLV 379 (501)
Q Consensus 300 ~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~ 379 (501)
+...++..++..++..+..+..-.++..++..-.. +........++++.++-.++..+-.........++..+++..+.
T Consensus 156 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (710)
T TIGR03796 156 LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-DWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFL 234 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666677766643222 22222233333334444455555556666777788888888888
Q ss_pred HHHHHH
Q 046229 380 AMVYNK 385 (501)
Q Consensus 380 ~~Iy~K 385 (501)
..+.+.
T Consensus 235 ~~ll~l 240 (710)
T TIGR03796 235 WHILRL 240 (710)
T ss_pred HHHHcC
Confidence 887764
No 72
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=86.24 E-value=58 Score=35.85 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 345 MVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKC 386 (501)
Q Consensus 345 l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~ 386 (501)
++++.++..++..+..........+...++|..+...+.+.-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 42 MVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333334444455555555566778888889988888888754
No 73
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=85.87 E-value=68 Score=36.33 Aligned_cols=86 Identities=8% Similarity=0.102 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 301 WKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVA 380 (501)
Q Consensus 301 ~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~ 380 (501)
...++..++..++.....+....++..++..-.... .......+++++++-.++..+-.........++..+++..+..
T Consensus 159 ~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (708)
T TIGR01193 159 VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGT-LGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIK 237 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555556666666667776664322221 1122233333333334444555556666777888888888888
Q ss_pred HHHHHHh
Q 046229 381 MVYNKCL 387 (501)
Q Consensus 381 ~Iy~K~L 387 (501)
.+.+.-.
T Consensus 238 ~ll~l~~ 244 (708)
T TIGR01193 238 HLFELPM 244 (708)
T ss_pred HHHcCCH
Confidence 7775443
No 74
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=85.83 E-value=60 Score=35.63 Aligned_cols=29 Identities=7% Similarity=-0.105 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046229 359 SFTQWIFRLQVAGIKMRSVLVAMVYNKCL 387 (501)
Q Consensus 359 ~~~~~~~~~~~l~~rir~~L~~~Iy~K~L 387 (501)
..........++..++|..+...+.+.-.
T Consensus 73 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~ 101 (555)
T TIGR01194 73 ADIFPAYAGMHIIANLRIALCEKILGAPI 101 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33444556777888888888888876654
No 75
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=85.77 E-value=62 Score=35.74 Aligned_cols=28 Identities=4% Similarity=-0.162 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 358 LSFTQWIFRLQVAGIKMRSVLVAMVYNK 385 (501)
Q Consensus 358 l~~~~~~~~~~~l~~rir~~L~~~Iy~K 385 (501)
+..........++..+++..+...+++.
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444455666666666666666653
No 76
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=80.29 E-value=99 Score=34.08 Aligned_cols=37 Identities=3% Similarity=-0.314 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046229 351 AAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCL 387 (501)
Q Consensus 351 ~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~L 387 (501)
+..+...+..........++..++|..+...+.+.-.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~ 108 (574)
T PRK11160 72 GRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSP 108 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Confidence 3344455555566677888889999999998887544
No 77
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=77.46 E-value=1.2e+02 Score=33.50 Aligned_cols=82 Identities=7% Similarity=-0.143 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 301 WKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVA 380 (501)
Q Consensus 301 ~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~ 380 (501)
...++..++..++..+..+....++..++..-... ... ..+++..++..+...+..........++..++|..+..
T Consensus 22 ~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 97 (585)
T TIGR01192 22 LLIVIANITLAAITIAEPILFGRIIDAISSKSDVL-PTL---ALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFG 97 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666666554321101 110 11111222223333333444445556677777777776
Q ss_pred HHHHHH
Q 046229 381 MVYNKC 386 (501)
Q Consensus 381 ~Iy~K~ 386 (501)
.+.+.-
T Consensus 98 ~l~~l~ 103 (585)
T TIGR01192 98 RIISMP 103 (585)
T ss_pred HHHcCC
Confidence 666543
No 78
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=70.42 E-value=32 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 446 IATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKR 480 (501)
Q Consensus 446 l~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R 480 (501)
++.+...++.+++++.+-++++....+.....|+|
T Consensus 34 ~~~l~A~vis~~lS~~ll~~~R~~~~~~ia~~~~r 68 (69)
T PF14012_consen 34 VAALLALVISMPLSYVLLRRLRDRASADIAARDER 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35556677888999999888887777777777665
No 79
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.36 E-value=2.7e+02 Score=31.44 Aligned_cols=110 Identities=14% Similarity=0.153 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 303 EIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMV 382 (501)
Q Consensus 303 ~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~I 382 (501)
.+.+..+-..++...-...--++..+................++++.++..+...+-.....+...++..|+|..+...+
T Consensus 152 a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~si 231 (716)
T KOG0058|consen 152 AFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSL 231 (716)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555544444444444441111222334455666666666777777777888999999999999999998
Q ss_pred HHHHhcCChhh-------hccCChhHHHHHHHHHHHH
Q 046229 383 YNKCLTLSCQA-------KQSHTSGEVINFMTIDAQR 412 (501)
Q Consensus 383 y~K~LrLs~~~-------~~~~ssGeIinlms~D~~~ 412 (501)
-++=...-... +-...+..+-|-++.+++.
T Consensus 232 l~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~ 268 (716)
T KOG0058|consen 232 LRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSD 268 (716)
T ss_pred HhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHH
Confidence 88777665543 3334444555555544443
No 80
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=61.66 E-value=2.9e+02 Score=31.50 Aligned_cols=188 Identities=10% Similarity=0.050 Sum_probs=99.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 298 FTAWKEIVFTAVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSV 377 (501)
Q Consensus 298 ~~~~~~l~l~~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~ 377 (501)
+.+..-++.+++..++..+..+...+++...+-.-.-+. -..-+..+++..++-.+...+=.+.......++...+...
T Consensus 154 ~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~t-L~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~ 232 (709)
T COG2274 154 RLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRST-LTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGR 232 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334445666777777888888888888888775443332 2233444444444444444444456667778888888888
Q ss_pred HHHHHHHHHhcCChhhhc------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 046229 378 LVAMVYNKCLTLSCQAKQ------SHTSGEVINFMTIDAQRVGDFSWRMHDSWLVLLQVSLAMLILHKSLGLASIATFSA 451 (501)
Q Consensus 378 L~~~Iy~K~LrLs~~~~~------~~ssGeIinlms~D~~~I~~~~~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~ 451 (501)
+...+.+.-+.--..... -...-+|-+.+++ .....+.++....+.+++-.++-+...+....+..+.
T Consensus 233 ~~~hll~Lpl~~f~~r~~Ge~~sR~~el~~Ir~flt~------~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~ 306 (709)
T COG2274 233 FFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTG------SILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLN 306 (709)
T ss_pred HHHHHHcCcHHHccCCChhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877776643331111 1122344444442 2233445555555555555555555444443333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046229 452 TVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRI 493 (501)
Q Consensus 452 ~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~ 493 (501)
+++..+...++.++.++...+..+.+..-+. +-+-++-+|.
T Consensus 307 ~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE-~i~gi~tvK~ 347 (709)
T COG2274 307 VLITLIFQPLLRRKTRKLIEESAEQQSFLVE-TIKGIETVKA 347 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHhhhHHHHH
Confidence 4444455555555555544444444333333 3333344443
No 81
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=47.51 E-value=3.2e+02 Score=27.72 Aligned_cols=94 Identities=11% Similarity=0.035 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhccCChhHHHHHHHHHHHHHHHHHHH
Q 046229 340 HKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKCLTLSCQAKQSHTSGEVINFMTIDAQRVGDFSWR 419 (501)
Q Consensus 340 ~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~LrLs~~~~~~~ssGeIinlms~D~~~I~~~~~~ 419 (501)
.+.|..+..++...++..++.....|..+....|-|.++..-..+|=-++..- -| --.+++.|+.|....+-.
T Consensus 53 ~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~r~I------EG-ASQRIQEDtmrfa~i~E~ 125 (315)
T PF05992_consen 53 DEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKLRHI------EG-ASQRIQEDTMRFAKIMED 125 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC------cc-HHHHHHHHHHHHHHHHHH
Confidence 44454444444455555556666777788888999999998888887777431 11 244999999999988773
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 046229 420 -MHDSWLVLLQVSLAMLILHKS 440 (501)
Q Consensus 420 -~~~l~~~pl~iival~lL~~~ 440 (501)
...++.+.+.++.-+-+|+..
T Consensus 126 Lgv~~i~simtliaFlPiL~~l 147 (315)
T PF05992_consen 126 LGVSFIRSIMTLIAFLPILWEL 147 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666654
No 82
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=45.55 E-value=4.4e+02 Score=28.81 Aligned_cols=76 Identities=13% Similarity=-0.017 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhhhhcCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 308 AVLALIYTLANYVGPYLIDSFVKYLNGEQEFKHKGYVMVSTFFAAKLVESLSFTQWIFRLQVAGIKMRSVLVAMVYNKC 386 (501)
Q Consensus 308 ~il~ll~~~~~~~~P~ll~~lid~l~~~~~~~~~~~~l~~~l~~~~li~~l~~~~~~~~~~~l~~rir~~L~~~Iy~K~ 386 (501)
.+..++..........++..+........ .....+++..++..+..........+...+....+|..+...+.+--
T Consensus 24 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 24 LLSALLSLLLPLLIGRIIDALLADLGELL---ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344444444444445544442222211 12233333333455555555555666667888888888877766554
No 83
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=40.28 E-value=3.1e+02 Score=25.54 Aligned_cols=12 Identities=8% Similarity=0.490 Sum_probs=4.6
Q ss_pred HHHHHHHHhhhH
Q 046229 481 MKATSEILRNMR 492 (501)
Q Consensus 481 ~~~~~E~L~gIr 492 (501)
++.+.+....++
T Consensus 84 i~~i~~~~~~i~ 95 (199)
T PF10112_consen 84 IRRIEKAIKRIR 95 (199)
T ss_pred HHHHHHHHHHcC
Confidence 333333333333
No 84
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=33.36 E-value=1.9e+02 Score=28.98 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 046229 455 VMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMRI 493 (501)
Q Consensus 455 ~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr~ 493 (501)
.+.+...+.-.....++|.....|.|+..+||.+---|+
T Consensus 104 ai~lt~~l~lv~~~~~rKlN~n~D~rLa~vN~~L~rHki 142 (308)
T PF14800_consen 104 AIFLTMALILVFMRHQRKLNMNTDVRLAAVNEALLRHKI 142 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhhe
Confidence 334444444455667888999999999999999865543
No 85
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=30.64 E-value=1.9e+02 Score=24.49 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q 046229 475 KSKGKRMKATSEI 487 (501)
Q Consensus 475 ~~~D~R~~~~~E~ 487 (501)
-..|||...++|.
T Consensus 51 v~eDER~~~I~ek 63 (111)
T PF09946_consen 51 VVEDERTERISEK 63 (111)
T ss_pred chhhHHHHHHHHH
Confidence 4578888888775
No 86
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=27.77 E-value=52 Score=30.70 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=31.8
Q ss_pred CCCCcCChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCc
Q 046229 224 TPYSNAGLFSIVTFSWMGSLIAVGNKKILDREDVPQLDSGDS 265 (501)
Q Consensus 224 ~p~~~a~~~s~ltFsW~~pll~~g~k~~L~~~Dlp~l~~~~~ 265 (501)
.++..-+.==+=+|.|++--++.|.+.++..+|+|+.|++-.
T Consensus 164 ~~~t~d~~~f~~fFkW~SaSisagS~S~i~~d~~~p~p~e~~ 205 (207)
T COG4245 164 QFLTLDGLQFREFFKWLSASISAGSRSTIGKDNVLPAPPEWT 205 (207)
T ss_pred cccccchHHHHHHHHHHHHHhhcccccccccccCCCCCCccC
Confidence 333333333356799999999999999999999998887643
No 87
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=26.59 E-value=8.6e+02 Score=26.45 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046229 362 QWIFRLQVAGIKMRSVLVAMVYNKCL 387 (501)
Q Consensus 362 ~~~~~~~~l~~rir~~L~~~Iy~K~L 387 (501)
.......++..++|..+...+.+.-.
T Consensus 71 ~~~~~~~~~~~~lR~~l~~~ll~~~~ 96 (547)
T PRK10522 71 ALTTLGHHFVYRLRSEFIKRILDTHV 96 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34455667777888888888886543
No 88
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.28 E-value=5.4e+02 Score=24.78 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 046229 419 RMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILRNMR 492 (501)
Q Consensus 419 ~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~gIr 492 (501)
.+...+..++-+.+.+.+++...++..+.|+ ++.++...+.++++.++..-.. -+-.-.+..-+|++||
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi--~~g~l~am~vl~rra~ra~Y~q---ieGqpGAa~avL~~lr 98 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFGSWWYWLIIGI--LLGLLAAMIVLSRRAQRAAYAQ---IEGQPGAAGAVLDNLR 98 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHhhc
Confidence 3333444444444555555542222223333 3344455566666665544333 3334444444555554
No 89
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=22.74 E-value=5.4e+02 Score=22.80 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046229 423 SWLVLLQVSLAMLILHKSL-------GLASIATFSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEILR 489 (501)
Q Consensus 423 l~~~pl~iival~lL~~~l-------g~~al~gl~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~L~ 489 (501)
...+.+.++.++.+++... +|.-. =++.+++....-...++..++.+++..+..+...+..+|+-.
T Consensus 60 ~PAmilt~~~G~~ll~~~~~~~~~~~~Wl~v-KL~~V~~L~~~H~~~~~~~k~~~~~~~~~s~~~~r~~nei~~ 132 (147)
T PF03653_consen 60 TPAMILTWISGLLLLFLNPGLGWFSSPWLHV-KLVLVLLLVAYHGWCGRYLKRLARGENKKSAKFFRIFNEIPT 132 (147)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcCcHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhHHHH
Confidence 3445555566655555433 33333 233344445556677888888888888788888888888653
No 90
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=22.68 E-value=3e+02 Score=21.71 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=17.3
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHH
Q 046229 253 DREDVPQLDSGDSVMQGFPKFRNVLA 278 (501)
Q Consensus 253 ~~~Dlp~l~~~~~a~~~~~~f~~~~~ 278 (501)
+++|+|.+|+. .++.+.-+|...+-
T Consensus 11 np~DiP~ipra-~aeyLqvrfN~~yl 35 (77)
T PF10911_consen 11 NPDDIPDIPRA-AAEYLQVRFNAAYL 35 (77)
T ss_pred CCcccCCccHH-HHHHHHHHhcHHHH
Confidence 57899998865 35666667766553
No 91
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=22.40 E-value=90 Score=27.18 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=32.7
Q ss_pred ccCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 395 QSHTSGEVINFMTIDAQRVGDFS-WRMHDSWLVLLQVSLAMLILHKSLGLASIATFSATVLVMLVNFPLGRLQ 466 (501)
Q Consensus 395 ~~~ssGeIinlms~D~~~I~~~~-~~~~~l~~~pl~iival~lL~~~lg~~al~gl~~~~i~~~i~~~l~k~~ 466 (501)
.+...||.+..-..+-.-+...+ .++.-+....+-.+++-.+... .+++.+.+++...+.+.+...+.|+.
T Consensus 50 ~~~~~GD~V~v~i~~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~-e~~~~l~~l~~l~~~~~~~~~~~~~~ 121 (135)
T PF04246_consen 50 IGAKVGDRVEVEIPESSLLKAAFLVYLLPLLALIAGAVLGSYLGGS-ELWAILGGLLGLALGFLILRLFDRRL 121 (135)
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556766655554444443332 2444433333333333333222 45555666655555555444444433
No 92
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.09 E-value=6.3e+02 Score=23.43 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=7.4
Q ss_pred HHHHHHHhhhHHHH
Q 046229 482 KATSEILRNMRILK 495 (501)
Q Consensus 482 ~~~~E~L~gIr~IK 495 (501)
+.+.|.-+.++.|+
T Consensus 75 ~~l~ea~~~i~~i~ 88 (199)
T PF10112_consen 75 EILEEAKEKIRRIE 88 (199)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555554
No 93
>COG1981 Predicted membrane protein [Function unknown]
Probab=20.92 E-value=5.7e+02 Score=22.83 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046229 449 FSATVLVMLVNFPLGRLQVKFQDKLMKSKGKRMKATSEI 487 (501)
Q Consensus 449 l~~~~i~~~i~~~l~k~~~~~~~~~~~~~D~R~~~~~E~ 487 (501)
+.++++....-...++..+++++.......+--+..||+
T Consensus 94 l~lV~lL~~~H~~~~~~~k~fa~~~n~~s~~~~R~~NEi 132 (149)
T COG1981 94 LTLVLLLLGYHGYCGRLLKKFARGENVRSARFYRVFNEI 132 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHhhc
Confidence 444556666778888999999888888888888888884
Done!