BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046230
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/363 (28%), Positives = 186/363 (51%), Gaps = 18/363 (4%)
Query: 101 RCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVG 160
R L GS +YLG +D ++L+KY SR GTL +H ELEE ++ +VG
Sbjct: 44 RVLMFGSNSYLGLT-TDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG 102
Query: 161 KPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
K AAI+F G+ +N L LM + I+ D +H SI++G+R S + + + HN L
Sbjct: 103 KEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDL 162
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHS 280
L ++ E + ++ +GI+SMEG++ PE +D+AHS
Sbjct: 163 RAKL-SRLPEDSAK--------LICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHS 213
Query: 281 IGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYA 340
+G +G G G ++ DVD++MGTF+KS S GG++AG ++I +LK+ + +++
Sbjct: 214 LGVIGHKGAGTASHFGLND-DVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFS 272
Query: 341 TSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPV 400
S++P + + A+++I E + + ++ +N+++ +++L GF+ LG +SP+
Sbjct: 273 ASMTPASVASTLKALEIIQNE------PEHIEKLWKNTDYAKAQLLDHGFD-LGATESPI 325
Query: 401 MPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALEVI 460
+PI + + K ++ + R + A+HT + + +A+E +
Sbjct: 326 LPIFIRSNEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKM 385
Query: 461 SRV 463
+V
Sbjct: 386 VKV 388
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 183/405 (45%), Gaps = 34/405 (8%)
Query: 72 SSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ES 127
S D + V+E+ + + ++ + + LG+YNY+G P VI E+
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSL 187
L+K+ TC SR+ GT H E+E+ + F G AIVF GY+ N I+ L KG
Sbjct: 91 LEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE 247
+I D+ +H SI +G + A I F+HN+ L++ L E P K +V++E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKE-------PAK--LVVLE 201
Query: 248 GIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMG 307
G+YSM G++ E +DEAHS+G G GRGV E ++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
TF+ S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDN-DSPVMPIMLYNPAKIPAFSRECLRQNXXXX 426
+K R+ N+ L+ MGF + + DS ++ +ML + + + L
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 XXX--XXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
L R IC A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSIC--AEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 145 bits (367), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 185/372 (49%), Gaps = 26/372 (6%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVIES----LKKYSPSTCSSRVDGGTLMVHNELEECVARF 158
LN + NYLG A P +I++ +++Y S R GT +H ELE+ ++ F
Sbjct: 46 LNFCANNYLGLADH-----PALIKTAQTVVEQYGFGXASVRFICGTQTIHKELEKDISEF 100
Query: 159 VGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G I++ + N + L+ IISD LNH SI++G R A +++N
Sbjct: 101 LGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAXG 160
Query: 219 HLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEA 278
LE L+E +G + ++ +G++S +G + +D++
Sbjct: 161 DLEAKLKEADEKG-------ARFKLIATDGVFSXDGIIADLKSICDLADKYNALVXVDDS 213
Query: 279 HSIGAVGKTGRGVCELLEVDTAD-VDIMMGTFTKSF-GSCGGYIAGSKELIQYLKYTCPA 336
H++G +G+ GRG E V AD VDI+ GT K+ G+ GGY +G KE+I++L+
Sbjct: 214 HAVGFIGENGRGTPEYCGV--ADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRP 271
Query: 337 HLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDN 396
+L++ +++P +I A + + E + G Q +++ENS +FR+ +K+GF+++ N
Sbjct: 272 YLFSNTVAP-----VIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGXEKLGFQLVPGN 326
Query: 397 DSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKA 456
P++P+ L + + L++ AR R+ SA HT++ L +A
Sbjct: 327 -HPIIPVXLGDAQLATNXADHLLQEGIYVVGFSYPVVPXGKARIRVQXSAVHTQQQLDRA 385
Query: 457 LEVISRVGDLVG 468
+E +VG +G
Sbjct: 386 IEAFGQVGKKLG 397
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 183/405 (45%), Gaps = 34/405 (8%)
Query: 72 SSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ES 127
S D + V+E+ + + ++ + + LG+YNY+G P VI E+
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L KG
Sbjct: 91 LEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE 247
+I D+ +H SI +G + A I F+HN+ L++ L E P K +V++E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKE-------PAK--LVVLE 201
Query: 248 GIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMG 307
G+YSM G++ E +DEAHS+G G GRGV E ++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
TF+KS G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDN-DSPVMPIMLYNPAKIPAFSRECLRQNXXXX 426
+K R+ N+ L+ MGF + + DS ++ +ML + + + L
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 XXX--XXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
L R IC A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSIC--AEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 109/405 (26%), Positives = 183/405 (45%), Gaps = 34/405 (8%)
Query: 72 SSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ES 127
S D + V+E+ + + ++ + + LG+YNY+G P VI E+
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L KG
Sbjct: 91 LEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE 247
+I D+ +H SI +G + A I F+HN+ L++ L E P K +V++E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKE-------PAK--LVVLE 201
Query: 248 GIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMG 307
G+YSM G++ E +DEAHS+G G GRGV E ++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
TF+KS G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDN-DSPVMPIMLYNPAKIPAFSRECLRQNXXXX 426
+K R+ N+ L+ MGF + + DS ++ +ML + + + L
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 XXX--XXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
L R IC A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSIC--AEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 170/372 (45%), Gaps = 30/372 (8%)
Query: 105 LGSYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVG 160
LG+YNY+G P VI E+L+K+ T SR+ GT H E+E+ + F G
Sbjct: 70 LGTYNYMGMT-----FDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYG 124
Query: 161 KPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
AIVF GY+ N I+ L KG +I D+ +H SI +G + A I F+HN+ L
Sbjct: 125 TTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDL 184
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHS 280
++ L E P K +V++EG+YSM G++ E +DEAHS
Sbjct: 185 DKRLGRLPKE-------PAK--LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHS 235
Query: 281 IGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYA 340
+G G GRGV E ++ +D ++GTF+KS G+ GG++ + + ++ C +++
Sbjct: 236 MGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFT 294
Query: 341 TSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDN-DSP 399
S+ P ++I+ ++ +K R+ N+ L+ MGF + + DS
Sbjct: 295 ASLPPSVVATATTSIRKLM------TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSA 348
Query: 400 VMPIMLYNPAKIPAFSRECLRQNXXXXXXX--XXXXXLLLARARICISASHTKEDLIKAL 457
++ +ML + + + L L R IC A HT + L
Sbjct: 349 IVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSIC--AEHTPAQIQTVL 406
Query: 458 EVISRVGDLVGI 469
+ G VG+
Sbjct: 407 GMFQAAGRAVGV 418
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 182/405 (44%), Gaps = 34/405 (8%)
Query: 72 SSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ES 127
S D + V+E+ + + ++ + + LG+YNY+G P VI E+
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L KG
Sbjct: 91 LEKFGSGTWGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE 247
+I D+ +H SI +G + A I F+HN+ L++ L E P K +V++E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKE-------PAK--LVVLE 201
Query: 248 GIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMG 307
G+YSM G++ E +DEAHS+G G GRGV E ++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
TF+ S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDN-DSPVMPIMLYNPAKIPAFSRECLRQNXXXX 426
+K R+ N+ L+ MGF + + DS ++ +ML + + + L
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 XXX--XXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
L R IC A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSIC--AEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 182/405 (44%), Gaps = 34/405 (8%)
Query: 72 SSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ES 127
S D + V+E+ + + ++ + + LG+YNY+G P VI E+
Sbjct: 41 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 91
Query: 128 LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L KG
Sbjct: 92 LEKFGSGTNGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 151
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE 247
+I D+ +H SI +G + A I F+HN+ L++ L E P K +V++E
Sbjct: 152 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKE-------PAK--LVVLE 202
Query: 248 GIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMG 307
G+YSM G++ E +DEAHS+G G GRGV E ++ +D ++G
Sbjct: 203 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 261
Query: 308 TFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
TF+ S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 262 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 315
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDN-DSPVMPIMLYNPAKIPAFSRECLRQNXXXX 426
+K R+ N+ L+ MGF + + DS ++ +ML + + + L
Sbjct: 316 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 375
Query: 427 XXX--XXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
L R IC A HT + L + G VG+
Sbjct: 376 MARPPATPAGTFLLRCSIC--AEHTPAQIQTVLGMFQAAGRAVGV 418
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/405 (26%), Positives = 182/405 (44%), Gaps = 34/405 (8%)
Query: 72 SSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ES 127
S D + V+E+ + + ++ + + LG+YNY+G P VI E+
Sbjct: 40 SGVTDPFAIVMEQVKSPTEAVIRGKDTIL----LGTYNYMGMT-----FDPDVIAAGKEA 90
Query: 128 LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSL 187
L+K+ T SR+ GT H E+E+ + F G AIVF GY+ N I+ L KG
Sbjct: 91 LEKFGSGTYGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEY 150
Query: 188 IISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE 247
+I D+ +H SI +G + A I F+HN+ L++ L E P K +V++E
Sbjct: 151 VILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPKE-------PAK--LVVLE 201
Query: 248 GIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMG 307
G+YSM G++ E +DEAHS+G G GRGV E ++ +D ++G
Sbjct: 202 GVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVG 260
Query: 308 TFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
TF+ S G+ GG++ + + ++ C +++ S+ P ++I+ ++
Sbjct: 261 TFSXSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLM------TA 314
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDN-DSPVMPIMLYNPAKIPAFSRECLRQNXXXX 426
+K R+ N+ L+ MGF + + DS ++ +ML + + + L
Sbjct: 315 HEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVN 374
Query: 427 XXX--XXXXXLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
L R IC A HT + L + G VG+
Sbjct: 375 MARPPATPAGTFLLRCSIC--AEHTPAQIQTVLGMFQAAGRAVGV 417
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 106/379 (27%), Positives = 180/379 (47%), Gaps = 29/379 (7%)
Query: 96 TNKVNRCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPS----TCSSRVDGGTLMVHNEL 151
++ +N C N NYLG A P +I + K S S R GT H EL
Sbjct: 45 SHVINFCAN----NYLGLANH-----PDLIAAAKAGXDSHGFGXASVRFICGTQDSHKEL 95
Query: 152 EECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRV 211
E+ +A F+G AI++ + N + L+ IISD+LNH SI++G R A
Sbjct: 96 EQKLAAFLGXEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYR 155
Query: 212 FQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXX 271
+ +N LE L+E G + +++ +G++S +G +
Sbjct: 156 YANNDXQELEARLKEAREAGA-------RHVLIATDGVFSXDGVIANLKGVCDLADKYDA 208
Query: 272 XXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSF-GSCGGYIAGSKELIQYL 330
+D++H++G VG+ GRG E +V VDI+ GT K+ G+ GGY A KE++++L
Sbjct: 209 LVXVDDSHAVGFVGENGRGSHEYCDV-XGRVDIITGTLGKALGGASGGYTAARKEVVEWL 267
Query: 331 KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGF 390
+ +L++ S++P + ++IKV+ + G++ R+ N+ FR + GF
Sbjct: 268 RQRSRPYLFSNSLAPAI---VAASIKVL---EXVEAGSELRDRLWANARQFREQXSAAGF 321
Query: 391 EVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTK 450
+ G D ++P+ L + F+RE ++ AR R SA+HT
Sbjct: 322 TLAG-ADHAIIPVXLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQXSAAHTP 380
Query: 451 EDLIKALEVISRVGDLVGI 469
E + +A+E +R+G +G+
Sbjct: 381 EQITRAVEAFTRIGKQLGV 399
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 170/376 (45%), Gaps = 30/376 (7%)
Query: 101 RCLNLGSYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVA 156
+ + LG+YNY+G P VI ++L ++ T SRV GT H E+ +
Sbjct: 45 KTILLGTYNYMGMT-----FDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALK 99
Query: 157 RFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNT 216
F G AIVF GY N ++ L KG II D+ +H SI +G A I F+HN+
Sbjct: 100 EFYGTEHAIVFSTGYQANLGMISTLAGKGDYIILDADSHASIYDGCWLGDAEIVRFRHNS 159
Query: 217 PSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLD 276
L++ L AE +V++EG+YSM G++ E +D
Sbjct: 160 VEDLDKRLGRLPAEAGK---------LVVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVD 210
Query: 277 EAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPA 336
EAH +G G+ GRGV E V+ ADVD ++GTF+ S G+ GG+ + + L+ C
Sbjct: 211 EAHGMGFFGEHGRGVFEEAGVE-ADVDFVVGTFSXSVGTVGGFCVSNHPKFEVLRLVCRP 269
Query: 337 HLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDN 396
+++ S+ P ++I+ ++ K A + +NS L+ MG+++ +
Sbjct: 270 YVFTASLPPSVVATAATSIRKLM------HAGDKRAHLWKNSRRLHQGLRDMGYKLGTET 323
Query: 397 -DSPVMPIMLYNPAKIPAFSRECLRQNXXXXXXX--XXXXXLLLARARICISASHTKEDL 453
S ++ ++L + A+ A + L + L R +C A H+ E +
Sbjct: 324 AQSAIIAVILTDMAQAVALWQGLLEAGLYVNTARPPATPAGMFLLRCSLC--AEHSDEQV 381
Query: 454 IKALEVISRVGDLVGI 469
+ L + G G+
Sbjct: 382 EQILGMFESAGRATGV 397
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 176/362 (48%), Gaps = 27/362 (7%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVIESLKK----YSPSTCSSRVDGGTLMVHNELEECVARF 158
LN S +YLG + P++I + ++ + + S G +VH LEE +A +
Sbjct: 42 LNFSSNDYLGLSHH-----PQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW 96
Query: 159 VGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G A++F G+ N A++ +M K I +D L+H S++ A S + +R F HN +
Sbjct: 97 LGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVT 156
Query: 219 HLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEA 278
HL +L Q MV+ EG++SM+G+ E +D+A
Sbjct: 157 HLARLLASPCPGQQ----------MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDA 206
Query: 279 HSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHL 338
H G +G+ GRG C L +V ++++ TF K FG G + S + YL +
Sbjct: 207 HGTGVIGEQGRGSCWLQKVKP---ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLI 263
Query: 339 YATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDS 398
Y+TS+ P A+ + +++ VI ++G +R +KLA + FR+ +Q + F L D+ S
Sbjct: 264 YSTSMPPAQAQALRASLAVIRSDEGDAR-REKLAALITR---FRAGVQDLPF-TLADSCS 318
Query: 399 PVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALE 458
+ P+++ + ++ + + +Q +AR R+ ++A+H +D+ + LE
Sbjct: 319 AIQPLIVGDNSRALQLAEKLRQQGCWVTGIRPPTVPAGIARLRLTLTAAHEMQDIDRLLE 378
Query: 459 VI 460
V+
Sbjct: 379 VL 380
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 175/362 (48%), Gaps = 27/362 (7%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVIESLKK----YSPSTCSSRVDGGTLMVHNELEECVARF 158
LN S +YLG + P++I + ++ + + S G +VH LEE +A +
Sbjct: 42 LNFSSNDYLGLSHH-----PQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEW 96
Query: 159 VGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G A++F G+ N A++ +M K I +D L+H S++ A S + +R F HN +
Sbjct: 97 LGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVT 156
Query: 219 HLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEA 278
HL +L Q MV+ EG++SM+G+ E +D+A
Sbjct: 157 HLARLLASPCPGQQ----------MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDA 206
Query: 279 HSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHL 338
H G +G+ GRG C L +V ++++ TF K FG G + S + YL +
Sbjct: 207 HGTGVIGEQGRGSCWLQKVKP---ELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLI 263
Query: 339 YATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDS 398
Y+TS+ P A+ + +++ VI ++G +R +KLA + FR+ +Q + F L D+ S
Sbjct: 264 YSTSMPPAQAQALRASLAVIRSDEGDAR-REKLAALITR---FRAGVQDLPF-TLADSCS 318
Query: 399 PVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKALE 458
+ P+++ + ++ + + +Q AR R+ ++A+H +D+ + LE
Sbjct: 319 AIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLE 378
Query: 459 VI 460
V+
Sbjct: 379 VL 380
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 142/297 (47%), Gaps = 19/297 (6%)
Query: 126 ESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVL--MR 183
E+L+ + +R GT H LE +A K AA+VF Y N A L L +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 184 KGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIM 243
G +I SDSLNH S++ G + + R+F+HN +HL RE IA P + +
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHL----RELIAADDPAAPK-----L 181
Query: 244 VIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVD 303
+ E +YSM+G+ E +DE H++G G G GV E + +D
Sbjct: 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRID 240
Query: 304 IMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDG 363
I GT K++G GGYIA S ++ ++ P +++TS+ P A ++I + +G
Sbjct: 241 IFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEG 300
Query: 364 SS-RGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL 419
R AQ++ ++ + L+ +G ++ D+ S ++P+++ +P A S L
Sbjct: 301 QKLRDAQQM-----HAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKAVSDMLL 351
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 19/297 (6%)
Query: 126 ESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVL--MR 183
E+L+ + +R GT H LE +A K AA+VF Y N A L L +
Sbjct: 71 EALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLF 130
Query: 184 KGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIM 243
G +I SDSLNH S++ G + + R+F+HN +H LRE IA P + +
Sbjct: 131 PGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAH----LRELIAADDPAAPK-----L 181
Query: 244 VIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDEAHSIGAVGKTGRGVCELLEVDTADVD 303
+ E +YSM+G+ E +DE H++G G G GV E + +D
Sbjct: 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGL-MHRID 240
Query: 304 IMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDG 363
I GT ++G GGYIA S ++ ++ P +++TS+ P A ++I + +G
Sbjct: 241 IFNGTLAXAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEG 300
Query: 364 SS-RGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL 419
R AQ++ ++ + L+ +G ++ D+ S ++P+++ +P A S L
Sbjct: 301 QKLRDAQQM-----HAKVLKMRLKALGMPII-DHGSHIVPVVIGDPVHTKAVSDMLL 351
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 24/365 (6%)
Query: 98 KVNRCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVAR 157
K + ++ + +YL +++ ++ KY + S + G + E A+
Sbjct: 49 KDDSIIDFTTSDYLNLSSAHN-LKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFAK 107
Query: 158 FVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTP 217
F+ P AI F G++ N AI L K I +D H SI++G + S A +R ++H
Sbjct: 108 FINYPRAIFFSSGFMANLAIYSTLFSKHDSIFADKYIHASIIDGIKLSQAKLRRYKHQQL 167
Query: 218 SHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXXXXXXLDE 277
S L++ I +G K + EG++S G + + + +DE
Sbjct: 168 SQLQD-----IYDG---------KSFITTEGVFSTSGSITQLDK---LAKITPEKLIVDE 210
Query: 278 AHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAH 337
AHS G +GK GRG + + I + K+FG G + ++ + +YL +
Sbjct: 211 AHSFGVLGKNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNY 270
Query: 338 LYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDND 397
+Y T++ P + + +K + + + AR+++N FF E++ +
Sbjct: 271 IYTTALPPMILKAALIQLKNLENVNDNR------ARLQQNITFFNELCDAKDLELVSKDL 324
Query: 398 SPVMPIMLYNPAKIPAFSRECLRQNXXXXXXXXXXXXLLLARARICISASHTKEDLIKAL 457
SP+ I L N + A R + +++T + + +AL
Sbjct: 325 SPIRSIQLNNANLAIRLKDKLFENKIIVSXFRYPTVPKDQAILRFSLHSNNTFDQIQQAL 384
Query: 458 EVISR 462
E+IS+
Sbjct: 385 EIISK 389
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 19/250 (7%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIR 210
+E+ +A+F G ++ G+ N +L + + + + D H S+ GAR + A
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 148
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXX 270
F HN HL +++ H P +++V+ IYS G + E
Sbjct: 149 PFMHNNCDHLRMLIQR---------HGPG---IIVVDSIYSTLGTIAPLAELVNISKEFG 196
Query: 271 XXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYL 330
+DE+HS+G G G G+ L + T +V M + K+F G I + E+ + +
Sbjct: 197 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCV 255
Query: 331 KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLAR-----IRENSNFFRSEL 385
+ ++++++ P A + + +++I D + ++AR + + RSE
Sbjct: 256 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSES 315
Query: 386 QKMGFEVLGD 395
Q +G E GD
Sbjct: 316 QIIGLET-GD 324
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 19/250 (7%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIR 210
+E+ +A+F G ++ G+ N +L + + + + D H S+ GAR + A
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 148
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXX 270
F HN HL +++ H P +++V+ IYS G + E
Sbjct: 149 PFMHNNCDHLRMLIQR---------HGPG---IIVVDSIYSTLGTIAPLAELVNISKEFG 196
Query: 271 XXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYL 330
+DE+HS+G G G G+ L + T +V M + K+F G I + E+ + +
Sbjct: 197 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCV 255
Query: 331 KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLAR-----IRENSNFFRSEL 385
+ ++++++ P A + + +++I D + ++AR + + RSE
Sbjct: 256 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSES 315
Query: 386 QKMGFEVLGD 395
Q +G E GD
Sbjct: 316 QIIGLET-GD 324
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 19/250 (7%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIR 210
+E+ +A+F G ++ G+ N +L + + + + D H S+ GAR + A
Sbjct: 109 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 168
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEXXXXXXXXX 270
F HN HL +++ H P +++V+ IYS G + E
Sbjct: 169 PFMHNNCDHLRMLIQR---------HGPG---IIVVDSIYSTLGTIAPLAELVNISKEFG 216
Query: 271 XXXXLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYL 330
+DE+HS+G G G G+ L + T +V M + K+F G I + E+ + +
Sbjct: 217 CALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCV 275
Query: 331 KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLAR-----IRENSNFFRSEL 385
+ ++++++ P A + + +++I D + ++AR + + RSE
Sbjct: 276 PFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSES 335
Query: 386 QKMGFEVLGD 395
Q +G E GD
Sbjct: 336 QIIGLET-GD 344
>pdb|2A9U|A Chain A, Structure Of The N-Terminal Domain Of Human Ubiquitin
Carboxyl-Terminal Hydrolase 8 (Usp8)
pdb|2A9U|B Chain B, Structure Of The N-Terminal Domain Of Human Ubiquitin
Carboxyl-Terminal Hydrolase 8 (Usp8)
Length = 144
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 452 DLIKALEVISRVGDLVGIKYFPAEPRKQMEEEERMK 487
++ KA+E R+ + + ++Y AE RK++EE++R +
Sbjct: 96 NIKKAVEEAERLSESLKLRYEEAEVRKKLEEKDRQE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,741,378
Number of Sequences: 62578
Number of extensions: 549090
Number of successful extensions: 1286
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1220
Number of HSP's gapped (non-prelim): 20
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)