RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 046230
(489 letters)
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 1042 bits (2697), Expect = 0.0
Identities = 431/489 (88%), Positives = 459/489 (93%)
Query: 1 MISIPYLTALTTYFSYGLLFVFGQIRDFFRKIIDWWSANNLQGYAPICLGLEDFYIRRLY 60
MI+IPYLTALTTYFSYGLLF FGQ+RDFFR I+DWW +NLQGYAPICLGLEDFYIRRLY
Sbjct: 1 MITIPYLTALTTYFSYGLLFAFGQLRDFFRAILDWWKTSNLQGYAPICLGLEDFYIRRLY 60
Query: 61 LRIQDCFGRPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYC 120
LRIQDCF RPI+SAPDAWFDVVER SND+NKTLKRT K RCLNLGSYNYLGFAA+DEYC
Sbjct: 61 LRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYC 120
Query: 121 TPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPV 180
TPRVIESLKKYS STCSSRVDGGT +H ELEE VARFVGKPAAIVFGMGY TNS I+P
Sbjct: 121 TPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPA 180
Query: 181 LMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWK 240
L+ KG LIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWK
Sbjct: 181 LIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWK 240
Query: 241 KIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA 300
KI+VIVEGIYSMEGELCK PEI+A+CKKYKAY+YLDEAHSIGAVGKTGRGVCELL VD A
Sbjct: 241 KIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPA 300
Query: 301 DVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILG 360
DVDIMMGTFTKSFGSCGGYIAGSKELIQYLK TCPAHLYATS+SPPA +Q+ISAIKVILG
Sbjct: 301 DVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILG 360
Query: 361 EDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLR 420
EDG++RGAQKLA+IRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL+
Sbjct: 361 EDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLK 420
Query: 421 QNVAVVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVGDLVGIKYFPAEPRKQM 480
QNVAVV V FPATPLLLARARICISASH++EDLIKALEVIS VGDLVGIKYFPAEP+KQ
Sbjct: 421 QNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGIKYFPAEPKKQE 480
Query: 481 EEEERMKLE 489
+ ++ +KLE
Sbjct: 481 QVKKFIKLE 489
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 468 bits (1208), Expect = e-164
Identities = 153/364 (42%), Positives = 216/364 (59%), Gaps = 16/364 (4%)
Query: 101 RCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVG 160
+ LN S +YLG A E+L KY SR+ GT +H ELEE +A F G
Sbjct: 2 KVLNFCSNDYLGLAN-HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG 60
Query: 161 KPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
K AA+VF GY N +L L KG LIISDSLNH SI++G R SGA R+F+HN L
Sbjct: 61 KEAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDL 120
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHS 280
E++LRE RP+ K +++ EG+YSM+G++ PE++ + KKY A +++DEAHS
Sbjct: 121 EKLLREAR--------RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHS 172
Query: 281 IGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYA 340
+G G GRGV E T DVDI+MGT K+FG+ GGYIAGSKELI YL+ +++
Sbjct: 173 VGVYGPHGRGVEEFG-GLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFS 231
Query: 341 TSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPV 400
TS+ P A ++A++V+ G ++ R++EN + R L+++GF V G +
Sbjct: 232 TSLPPAVAAAALAALEVLQGGP------ERRERLQENVRYLRRGLKELGFPVGGSPSHII 285
Query: 401 MPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIKALEVI 460
P++ +PAK AFS L + + V + +P P AR RI +SA+HTKED+ + LE +
Sbjct: 286 PPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEAL 345
Query: 461 SRVG 464
VG
Sbjct: 346 KEVG 349
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 359 bits (924), Expect = e-121
Identities = 139/414 (33%), Positives = 226/414 (54%), Gaps = 28/414 (6%)
Query: 51 LEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNY 110
F + L + R + + + R + LN S +Y
Sbjct: 3 FLSFLRQALQALKAEGLYRGLRALDRRQ-GLAIRAD------------GRKVLNFCSNDY 49
Query: 111 LGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMG 170
LG A+ E ++++Y SR+ GT +H ELEE +A F+G AA++F G
Sbjct: 50 LGLASHPE-LIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSG 108
Query: 171 YVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAE 230
+V N +L L++KG LI SD LNH SI++G R S A +R F+HN HLE +L E
Sbjct: 109 FVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEAREN 168
Query: 231 GQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRG 290
G R +++ EG++SM+G++ PE++ + +KY A +Y+DEAH++G +G GRG
Sbjct: 169 GARR-------KLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRG 221
Query: 291 VCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQ 350
+ E ++ +VDI++GT K+ GS GGYIAGS LI YL+ +++T++ P A
Sbjct: 222 LAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAA 281
Query: 351 IISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAK 410
++A++++ E+G R R++E + FFRS L+ +G VL ++SP++P++L + +
Sbjct: 282 ALAALRIL--EEGPER----RERLQELAAFFRSLLKALGL-VLLPSESPIIPVILGDEER 334
Query: 411 IPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVG 464
SR L + + V + P P AR RI ++A+HT+ED+ + E +S VG
Sbjct: 335 ALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEVG 388
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 291 bits (746), Expect = 6e-95
Identities = 121/396 (30%), Positives = 217/396 (54%), Gaps = 41/396 (10%)
Query: 69 RPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIES- 127
RP+ P + R + R LN S +YLG A+ P VI++
Sbjct: 1 RPLDRGPGPE--------------VVRDGR--RLLNFSSNDYLGLASH-----PEVIQAA 39
Query: 128 ---LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRK 184
++Y + +SR+ G +H ELEE +A + G AA++F GY+ N ++ L+ K
Sbjct: 40 QQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISALVGK 99
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMV 244
G LI+SD+LNH S+++G R SGA +R ++HN HLE +L + +R ++ ++
Sbjct: 100 GDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEK---------NRGERRKLI 150
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI 304
+ +G++SM+G++ P+++A+ ++Y A++ +D+AH G +G+ GRG E + VDI
Sbjct: 151 VTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDI 210
Query: 305 MMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGS 364
+GT +K+ GS G Y+AGS+ LI YL +++T++ P A ++A+++I ++
Sbjct: 211 QVGTLSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELI--QEEP 268
Query: 365 SRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVA 424
R + LA I R+ L+ +GF L + +P++P+++ + A A + E +Q +
Sbjct: 269 WRREKLLALIAR----LRAGLEALGF-TLMPSCTPIVPVIIGDNASALALAEELQQQGIF 323
Query: 425 VVTVAFPATPLLLARARICISASHTKEDLIKALEVI 460
V + P P +R R+ +SA+HT D+ + E +
Sbjct: 324 VGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL 359
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 288 bits (739), Expect = 2e-93
Identities = 115/400 (28%), Positives = 192/400 (48%), Gaps = 42/400 (10%)
Query: 69 RPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIE-- 126
RP W V R R LN S +YLG A PR+I
Sbjct: 24 RPREGGAGRWLVVDGR----------------RMLNFASNDYLGLARH-----PRLIAAA 62
Query: 127 --SLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRK 184
+ ++Y + SR+ G H LEE +A + G A++F GY N A+L L K
Sbjct: 63 QQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGK 122
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMV 244
G LI+SD LNH S+++GAR S A +R + HN LE +L + R R +
Sbjct: 123 GDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLA------KWRAGRAL----I 172
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI 304
+ E ++SM+G+L E++A+ +++ A++ +DEAH G +G GRG+ + I
Sbjct: 173 VTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVI 232
Query: 305 MMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGS 364
++GT K+ GS G + GS+ LI YL ++ T++ P A +A++++ E
Sbjct: 233 LVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREP-- 290
Query: 365 SRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVA 424
++ R+ R+ L+ +GF+ L D+ S + P+++ + + A + Q
Sbjct: 291 ----ERRERLAALIARLRAGLRALGFQ-LMDSQSAIQPLIVGDNERALALAAALQEQGFW 345
Query: 425 VVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVG 464
V + P P +R RI ++A+HT+ D+ + LE ++
Sbjct: 346 VGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 287 bits (736), Expect = 4e-93
Identities = 125/374 (33%), Positives = 211/374 (56%), Gaps = 20/374 (5%)
Query: 98 KVN--RCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECV 155
+VN +NL S NYLGFA +++++Y + R GTL +H ELEE +
Sbjct: 29 RVNGKEVINLSSNNYLGFA-DHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKL 87
Query: 156 ARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHN 215
A+F AA+VF G+ TN +L L+RKG +++SD LNH SI++G R + AT ++++H
Sbjct: 88 AKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHA 147
Query: 216 TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYL 275
L+ VLRE + G K +++ +G++SM+G++ PEI+ + ++Y A Y+
Sbjct: 148 DMDDLDRVLRENPSYG---------KKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYV 198
Query: 276 DEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCP 335
D+AH G +G+ GRG ++ VDI +GT +K+ G GGY AG KELI+YLK
Sbjct: 199 DDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRAR 257
Query: 336 AHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGD 395
L++T+ P + +A+ + + + R+ +N+ FF++ L K+G++ G
Sbjct: 258 PFLFSTAQPPAVVAALAAAVDELQRSP------ELMERLWDNTRFFKAGLGKLGYD-TGG 310
Query: 396 NDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIK 455
+++P+ P+++ + FSR + + ++ FP P AR R +A HTK+DL +
Sbjct: 311 SETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQ 370
Query: 456 ALEVISRVGDLVGI 469
AL+ +VG +G+
Sbjct: 371 ALDAYEKVGKELGL 384
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 268 bits (689), Expect = 8e-86
Identities = 121/372 (32%), Positives = 194/372 (52%), Gaps = 25/372 (6%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVARF 158
+N + NYLG A P +I +L + S R GT +H ELEE +A+F
Sbjct: 45 INFCANNYLGLANH-----PELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKF 99
Query: 159 VGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPS 218
+G AI++ + N + L+ K IISD+LNH SI++G R A + +N +
Sbjct: 100 LGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMA 159
Query: 219 HLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEA 278
LE L+E G + ++ +G++SM+G++ PEI + KY A + +D++
Sbjct: 160 DLEAQLKEAKEAGA-------RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDS 212
Query: 279 HSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSF-GSCGGYIAGSKELIQYLKYTCPAH 337
H++G VG+ GRG E V VDI+ GT K+ G+ GGY AG KE+I +L+ +
Sbjct: 213 HAVGFVGENGRGTVEHFGVM-DRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPY 271
Query: 338 LYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDND 397
L++ S++P I ++ +L E R R+ EN+ +FR + GF LG +
Sbjct: 272 LFSNSLAPAIVAASIKVLE-LLEESDELR-----DRLWENARYFREGMTAAGFT-LGPGE 324
Query: 398 SPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIKAL 457
P++P+ML + F+ L + V V+ +FP P AR R +SA+HTKE L +A+
Sbjct: 325 HPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAI 384
Query: 458 EVISRVGDLVGI 469
+ +VG +G+
Sbjct: 385 DAFEKVGKELGV 396
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 213 bits (544), Expect = 2e-64
Identities = 119/380 (31%), Positives = 196/380 (51%), Gaps = 25/380 (6%)
Query: 95 RTNKVNRCLNLGSYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNE 150
R LN + NYLG ++ P +I ++L ++ S R GT +H E
Sbjct: 33 RVADGREVLNFCANNYLGLSSH-----PDLIQAAKDALDEHGFGMSSVRFICGTQDIHKE 87
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIR 210
LE +A F+G I++ + N + L+ IISD+LNH SI++G R A
Sbjct: 88 LEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRY 147
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYK 270
+ +N + LE L+E A HR ++ +G++SM+G + EI + KY
Sbjct: 148 RYANNDMADLEAQLKE--ARAAGARHR-----LIATDGVFSMDGVIAPLDEICDLADKYD 200
Query: 271 AYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSF-GSCGGYIAGSKELIQY 329
A + +DE H+ G +G TGRG EL V VDI+ GT K+ G+ GG+ KE+++
Sbjct: 201 ALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALGGASGGFTTARKEVVEL 259
Query: 330 LKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMG 389
L+ +L++ S+ PPA + ++IKV+ + S+ +L N+ +FR ++ G
Sbjct: 260 LRQRSRPYLFSNSL-PPAV--VGASIKVLEMLEASNELRDRLW---ANTRYFRERMEAAG 313
Query: 390 FEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHT 449
F++ D P++P+MLY+ F+R L + + V +P P AR R+ ISA+HT
Sbjct: 314 FDIKP-ADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHT 372
Query: 450 KEDLIKALEVISRVGDLVGI 469
+E L +A+E +R+G +G+
Sbjct: 373 EEQLDRAVEAFTRIGRELGV 392
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 205 bits (524), Expect = 3e-61
Identities = 120/364 (32%), Positives = 180/364 (49%), Gaps = 32/364 (8%)
Query: 107 SYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKP 162
S +YLG P+VI E+L + +R GT H ELE +A GK
Sbjct: 53 SNDYLGMGQH-----PKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKE 107
Query: 163 AAIVFGMGYVTNSAILPVLMRK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
AA+VF GYV+N A L L + +I SD LNH S++ G R S +F+HN +HL
Sbjct: 108 AALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRHNDVAHL 167
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHS 280
EE+L + RP K+ + E +YSM+G++ EI + KY A YLDE H+
Sbjct: 168 EELLAAADPD------RP--KL-IAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHA 218
Query: 281 IGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYA 340
+G G G G+ E + +DI+ GT K+FG GGYIAGS L+ ++ P ++
Sbjct: 219 VGMYGPRGGGIAERDGLMD-RIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFT 277
Query: 341 TSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPV 400
TS+ P A +++I+ L E R R +E + ++ L G V+ N+S +
Sbjct: 278 TSLPPAIAAAALASIR-HLKESNEER-----ERHQERAAKLKAALDAAGIPVM-PNESHI 330
Query: 401 MPIMLYNPAKIPAFSRECLRQ-NVAVVTVAFPATPLLLARARICISASHTKED---LIKA 456
+P+M+ +P K S L + + V + +P P R RI + HT E L++A
Sbjct: 331 VPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEA 390
Query: 457 LEVI 460
L +
Sbjct: 391 LVEV 394
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 185 bits (472), Expect = 7e-54
Identities = 124/367 (33%), Positives = 188/367 (51%), Gaps = 29/367 (7%)
Query: 107 SYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIV 166
S +YLG E + E+L KY +R GT + H ELE +A GK +A+V
Sbjct: 52 SNDYLGMGQHPE-VLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALV 110
Query: 167 FGMGYVTNSAILPVLMRK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVL 224
F GYV N A L L + G +I SD LNH S++ G R SGA +F+HN +HLE++L
Sbjct: 111 FTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAHLEKLL 170
Query: 225 REQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAV 284
P RP KI + E +YSM+G++ EI + KY A YLDE H++G
Sbjct: 171 ----QSVDPN--RP--KI-IAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY 221
Query: 285 GKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSIS 344
G G G+ E + +DI+ GT K+FG GGYIA S++LI ++ P ++ TS+
Sbjct: 222 GPRGGGIAERDGL-MHRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLP 280
Query: 345 PPAAEQIISAIKVILGEDGSSRGAQKLARIR--ENSNFFRSELQKMGFEVLGDNDSPVMP 402
P A ++I+ + + +Q L R EN ++ L+ +G V+ N S ++P
Sbjct: 281 PAIAAGATASIRHL-------KESQDL-RRAHQENVKRLKNLLEALGIPVI-PNPSHIVP 331
Query: 403 IMLYNPAKIPAFSRECL-RQNVAVVTVAFPATPLLLARARICISASHTK---EDLIKAL- 457
+++ + A S L + + V + +P P R RI + +HT +DL++AL
Sbjct: 332 VIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALL 391
Query: 458 EVISRVG 464
V R+G
Sbjct: 392 LVWDRLG 398
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 183 bits (467), Expect = 5e-53
Identities = 122/369 (33%), Positives = 181/369 (49%), Gaps = 33/369 (8%)
Query: 107 SYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKP 162
S +YLG P V+ E+L +R GT H LE +A GK
Sbjct: 52 SNDYLGMGQH-----PAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKE 106
Query: 163 AAIVFGMGYVTNSAILPVLMRK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
AA++F GYV+N A L L + G +I+SD LNH S++ G R S A R+F+HN P+ L
Sbjct: 107 AALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRHNDPADL 166
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHS 280
E L + HRP K+ V E +YSM+G++ EI + +K+ A YLDE H+
Sbjct: 167 ERKLSDLDP------HRP--KL-VAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHA 217
Query: 281 IGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYA 340
+G G G G+ E E + I+ GT K+FG GGYI GS L +++ ++
Sbjct: 218 VGLYGPRGGGIAE-REGLADRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFT 276
Query: 341 TSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPV 400
TS+ P A +++++ L + R R ++ R+ L K G L N S +
Sbjct: 277 TSLPPAVAAGALASVRH-LKASSAER-----ERHQDRVARLRARLDKAGIPHL-PNPSHI 329
Query: 401 MPIMLYNPAKIPAFSRECL-RQNVAVVTVAFPATPLLLARARICISASHTKED---LIKA 456
+P+M+ +P S E L R + V + +P P R RI S HT D L++A
Sbjct: 330 VPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQA 389
Query: 457 L-EVISRVG 464
L E+ +R+G
Sbjct: 390 LSEIWARLG 398
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 181 bits (461), Expect = 3e-52
Identities = 117/387 (30%), Positives = 187/387 (48%), Gaps = 39/387 (10%)
Query: 107 SYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKP 162
S +YLG P VI ++L +Y +R GT H LE +A GK
Sbjct: 53 SNDYLGMGQH-----PDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKE 107
Query: 163 AAIVFGMGYVTNSAILPVLMRK--GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL 220
+A++F GYV+N A L L + G +I+SD+LNH S++ G R SGA +VF+HN + L
Sbjct: 108 SALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADL 167
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHS 280
EE L RP ++ E +YSM+G++ I + +Y A Y+DE H+
Sbjct: 168 EEQLASV------DPDRP---KLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHA 218
Query: 281 IGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYA 340
+G G G G+ E + +D++ GT K+FG GGYIA S +LI +++ P ++
Sbjct: 219 VGLYGARGGGIAE-RDGLMDRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFT 277
Query: 341 TSISPPAAEQIISAIKVILGEDGSSRGA--QKLARIRENSNFFRSELQKMGFEVLGDNDS 398
T++ P A +AI+ L + R A ++A + +++L G V+ + S
Sbjct: 278 TALPPAVAAGATAAIRH-LKTSQTERDAHQDRVAAL-------KAKLNANGIPVM-PSPS 328
Query: 399 PVMPIMLYNPAKIPAFSRECLRQN-VAVVTVAFPATPLLLARARICISASHTKEDLIKAL 457
++P+M+ +P A S + ++ + + + +P P R RI + H ED I AL
Sbjct: 329 HIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDED-IDAL 387
Query: 458 EVISRVGDLVGIKYFPAEPRKQMEEEE 484
V LV I PR + +
Sbjct: 388 -----VAALVAIWDRLELPRWREAAQA 409
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 171 bits (436), Expect = 6e-48
Identities = 110/381 (28%), Positives = 187/381 (49%), Gaps = 30/381 (7%)
Query: 103 LNLGSYNYLGFAASD---EYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFV 159
+N S NYLG ++ E CT +L+KY +C R GT+ VH + E +A+F+
Sbjct: 112 VNFASANYLGLIGNEKIKESCT----SALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFL 167
Query: 160 GKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSH 219
G P +I++ G T +++P +KG +I++D H I NG S +TI F+HN
Sbjct: 168 GTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMES 227
Query: 220 LEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAH 279
L L E++ R + + I +VE IY G++ EI+ + +KY+ + LDE++
Sbjct: 228 LRNTL-EKLTAENKRKKKLRRYI--VVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESN 284
Query: 280 SIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLY 339
S G +GK+GRG+ E V +DI+ + + GG+ GS ++ + + + +++
Sbjct: 285 SFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYVF 344
Query: 340 ATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKM-GFEVLGDNDS 398
+ S+ P A I+AI V+ ED S LA+++EN L + G + + S
Sbjct: 345 SASLPPYLASAAITAIDVL--EDNPS----VLAKLKENIALLHKGLSDIPGLSIGSNTLS 398
Query: 399 PVMPIMLYNPAKIPAFSRECLRQNVA--------VVTVAFPATPL----LLARARICISA 446
P++ + L L +++A V+ V + L L R+ +SA
Sbjct: 399 PIVFLHLEKSTGSAKEDLSLL-EHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSA 457
Query: 447 SHTKEDLIKALEVISRVGDLV 467
HT+ D++KA E + RV V
Sbjct: 458 GHTESDILKASESLKRVAASV 478
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 164 bits (418), Expect = 2e-46
Identities = 90/389 (23%), Positives = 156/389 (40%), Gaps = 64/389 (16%)
Query: 102 CLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMV------HNELEECV 155
+NLGS YLG D P V ++ K + GGT + EL E +
Sbjct: 3 KINLGSNEYLG----DSGTLPAVAKAEKD--------ALAGGTRNLYGPTDGLPELREAL 50
Query: 156 ARFVGKP--------AAIVFGMGYVTNSAILPVLMR--KGSLIISDSLNHNSIVNGARGS 205
A+F+G+ AA+VFG G N L L+R G I+ + + S + R +
Sbjct: 51 AKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLA 110
Query: 206 GATIRVF-------QHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCK 258
G + + H LE L+E +V+ ++ G +
Sbjct: 111 GGEVVRYPLYSSNDFHLDFDALEAALKEA----------TEGNKVVLHTSPHNPTGTVAT 160
Query: 259 FPE---IIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGS 315
E ++ + K++ + +DEA++ G + V + +++G+F+K+FG
Sbjct: 161 LEELEKLLDLAKEHNILLLVDEAYAGFVFG-SLDAVATRALLAEGPNLLVVGSFSKAFGL 219
Query: 316 CG---GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLA 372
G GYI G+ +I L+ Y+++ AA +S ++ E +
Sbjct: 220 AGWRVGYILGNAAVISQLRKLA-RPFYSSTHLQAAAAAALSDPLLVASE-----LEEMRQ 273
Query: 373 RIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECL-RQNVAVVTVAFP 431
RI+E ++ R L+ G VL + + + +P A ++ L V V +
Sbjct: 274 RIKERRDYLRDGLEAAGLSVL-PSQAGFFLLTGLDPEAALALAQVLLEEVGVYVTPGSSF 332
Query: 432 ATPLLLARARICISASHTKEDLIKALEVI 460
P L RI + A T+E+L + LE I
Sbjct: 333 GGPGWL---RITV-AGGTEEELEELLEAI 357
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 157 bits (398), Expect = 3e-43
Identities = 99/388 (25%), Positives = 179/388 (46%), Gaps = 28/388 (7%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKP 162
LN ++++L +S +ESL Y +C R GT+ H ELE+C+A F+G
Sbjct: 1 LNFATHDFLS-TSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTE 59
Query: 163 AAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEE 222
+AI++ G T S+ + ++G L++ D + +++ G S A +R F+HN L
Sbjct: 60 SAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRR 119
Query: 223 VLREQIAEG--QPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHS 280
VL EQ+ + ++ ++VEG+Y G L E++A+ +++ + LDE+ S
Sbjct: 120 VL-EQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFS 178
Query: 281 IGAVGKTGRGVCELLEVD-TADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLY 339
G +GK+GRG E + +I+ + +FGS GG GS+E++ + + + + +
Sbjct: 179 FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCF 238
Query: 340 ATSISPPAAEQIISAIKVIL-GEDGSSRGAQKLARIRE---NSNFFRSELQKMGFEVLGD 395
+ S P A+ +A L G +R +A + NS+ + + + D
Sbjct: 239 SASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSD 298
Query: 396 NDSPVMPIMLYNPAKIPA------------FSRECLRQNVAVVTVAFPATPLLLARA--- 440
SP++ + L + A + L + VAVV+ L
Sbjct: 299 PISPIIYLRL---SDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPC 355
Query: 441 -RICISASHTKEDLIKALEVISRVGDLV 467
R+ +ASHT+ED+ K L V+ + +
Sbjct: 356 LRVVANASHTREDIDKLLTVLGEAVEAI 383
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 119 bits (298), Expect = 6e-29
Identities = 103/394 (26%), Positives = 173/394 (43%), Gaps = 52/394 (13%)
Query: 100 NRCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELEECVARFV 159
N L L S+ + AA++ + K+Y S + G H LE +A
Sbjct: 110 NDYLGLSSHPTISNAAAN---------AAKEYGMGPKGSALICGYTTYHRLLESSLADLK 160
Query: 160 GKPAAIVFGMGYVTNSAILPVLMRKGSL--------------IISDSLNHNSIVNGAR-- 203
K +V G+ N A + + SL I SD+LNH SI++G R
Sbjct: 161 KKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA 220
Query: 204 --GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPE 261
+ V++H HL +L + K+ +V+ + ++SM+G+ E
Sbjct: 221 ERQGNVEVFVYRHCDMYHLNSLL----------SSCKMKRKVVVTDSLFSMDGDFAPMEE 270
Query: 262 IIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIA 321
+ + KKY + +D+AH G+ G GV E + ADVD+ +GT +K+ G GG+IA
Sbjct: 271 LSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHGGFIA 329
Query: 322 GSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFF 381
SK+ Q ++ + +++T+I P A +A V++ R R++E F
Sbjct: 330 CSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAA--VVVARKEKWRRKAIWERVKE----F 383
Query: 382 RSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARAR 441
+ L + D SP++ +++ N K SR L+ V+ + P P R R
Sbjct: 384 K-ALSGV------DISSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLR 436
Query: 442 ICISASHTKEDLIKALEVISRVGDLVGIK-YFPA 474
+ +SA+HT ED+ K + +S D Y P+
Sbjct: 437 VTLSAAHTTEDVKKLITALSSCLDFDNTATYIPS 470
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 114 bits (287), Expect = 1e-27
Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 47/336 (13%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIR 210
E+ +A F G + ++ G+ N +L + + + D H S+ G R +GA
Sbjct: 104 FEKKLAAFTGFESCLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAH 163
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYK 270
F+HN H LR QI H P +++V+ +YS G + +I+ I +++
Sbjct: 164 PFRHNDVDH----LRRQIER-----HGPG---IIVVDSVYSTTGTIAPLADIVDIAEEFG 211
Query: 271 AYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYL 330
+ +DE+HS+G G G G+ L + T+ V + + K+F G I +EL +Y+
Sbjct: 212 CVLVVDESHSLGTHGPQGAGLVAELGL-TSRVHFITASLAKAFAGRAGIITCPRELAEYV 270
Query: 331 KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGF 390
+ ++++++ P + + ++VI D + AR+ N+ F R L ++G+
Sbjct: 271 PFVSYPAIFSSTLLPHEIAGLEATLEVIESAD------DRRARLHANARFLREGLSELGY 324
Query: 391 EVLGDNDSPVMPIMLYNPAKIPAFSREC-LRQNVAVVTVAF------------PATPLLL 437
+ +S ++ + E +N V+ A PATP
Sbjct: 325 NIRS--ESQIIAL-------------ETGSERNTEVLRDALEERNVFGAVFCAPATPKNR 369
Query: 438 ARARICISASHTKEDLIKALEVISRVGDLVGIKYFP 473
R+ ++A T DL + LEV D V + ++
Sbjct: 370 NLIRLSLNADLTASDLDRVLEVCREARDEVDLWFWK 405
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 111 bits (278), Expect = 9e-27
Identities = 89/323 (27%), Positives = 140/323 (43%), Gaps = 36/323 (11%)
Query: 136 CSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNH 195
SR G + ++LE +A F G P A + GY+ N + L ++ D H
Sbjct: 46 GGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVH 105
Query: 196 NSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGE 255
S+V + F+HN HLE +L R I + V +YS +G
Sbjct: 106 ISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGR-------IFIFVCSVYSFKGT 158
Query: 256 LCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGS 315
L +IIA+ KKY A++ +DEAH++G G G+G C L + + ++ T++K+ GS
Sbjct: 159 LAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE--NFYAVLVTYSKALGS 216
Query: 316 CGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIR 375
G + S E+ Q L P Y+T + P I A + E +R ++L R++
Sbjct: 217 MGAALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELAR--KQLFRLK 274
Query: 376 ENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQ-----NVAVVTVAF 430
E +F QK G V PI L P S + L + V V F
Sbjct: 275 E---YFA---QKFSSAAPG----CVQPIFL------PGISEQELYSKLVETGIRVGVVCF 318
Query: 431 PATPLLLARARICISASHTKEDL 453
P P L R+ + A +T++++
Sbjct: 319 PTGPFL----RVNLHAFNTEDEV 337
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 90.8 bits (226), Expect = 1e-19
Identities = 90/374 (24%), Positives = 157/374 (41%), Gaps = 52/374 (13%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVIE----SLKKY-SPSTCSSRVDGGTLMVHN---ELEEC 154
+N S +YLG D + P +IE +LK+ S SSR T + +LEE
Sbjct: 49 VNFVSCSYLGL---DTH--PAIIEGAVDALKRTGSLHLSSSR----TRVRSQILKDLEEA 99
Query: 155 VARFVGKPAAIVFGMGYVTNSAILPVLM------RKGSLIISDSLNHNSIVNGARGSGAT 208
++ G + + F + ILP+L ++ D H S+ N +G A
Sbjct: 100 LSELFG-ASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASL-NILKGICAD 157
Query: 209 ---IRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAI 265
+ HN LE++ + K + + +G+YSM G + E++ +
Sbjct: 158 ETEVETIDHNDLDALEDICKTN------------KTVAYVADGVYSM-GGIAPVKELLRL 204
Query: 266 CKKYKAYIYLDEAHSIGAVGKTGRG-VCELLEVDTADVDIMMGTFTKSFGSCGGYIA-GS 323
+KY ++Y+D+AH + GK G G V L+ + I+ + K+FG+ GG I G
Sbjct: 205 QEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASGGVIMLGD 264
Query: 324 KELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRS 383
E I+ + ++ S++ A I+++ ++ L E+ Q+ +++ N F S
Sbjct: 265 AEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQL--QQ--KLQNNIALFDS 320
Query: 384 ELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARIC 443
+ + P+ I + + +++ L + V FP A RI
Sbjct: 321 LIPTEQSG----SFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIM 376
Query: 444 ISASHTKEDLIKAL 457
ASHT D IK L
Sbjct: 377 FRASHT-NDEIKRL 389
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 65.0 bits (159), Expect = 3e-11
Identities = 80/406 (19%), Positives = 144/406 (35%), Gaps = 80/406 (19%)
Query: 110 YLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGG------TLMVHNELEECVARFVG--K 161
YL AA+ V++++ +Y ++ G ++ E VARF+
Sbjct: 25 YLDNAAT-SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADS 83
Query: 162 PAAIVFGMGYVTNSAI------LPVLMRKGSLIISDSLNHNSIV----NGARGSGATIRV 211
IVF G T A+ L ++ G I+ L H+S + A+ +GA +RV
Sbjct: 84 SDEIVFTRG--TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRV 141
Query: 212 FQ-HNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFP--EIIAICKK 268
+ + L + I P+T K+ V + + ++ G P EI + +
Sbjct: 142 IPLDDDGLLDLDALEKLI---TPKT-----KL-VALSHVSNVTG--TVNPVKEIAELAHE 190
Query: 269 YKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGS---CGGYIAGSKE 325
+ A + +D A + G + ++V D + + K G + KE
Sbjct: 191 HGALVLVDAAQAAGHL---------PIDVQELGCDFLAFSGHKWLLGPTGIGV-LYVRKE 240
Query: 326 L-------------IQYLKYTCPAHL----YATSISPPAAEQIIS---AIKVILGEDGSS 365
L I+Y+ L P I A+ +L +
Sbjct: 241 LLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEA 300
Query: 366 RGAQKLARIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAKIPA--FSRECLRQN 422
A RE + + L ++ G E+ G D+ I+ +N I + +
Sbjct: 301 IE----AHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKG 356
Query: 423 VAVVTVAFPATPLLL-----ARARICISASHTKEDLIKALEVISRV 463
+AV A PL A R + +T+ED+ + LE + +
Sbjct: 357 IAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKA 402
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 60.8 bits (148), Expect = 5e-10
Identities = 72/337 (21%), Positives = 121/337 (35%), Gaps = 54/337 (16%)
Query: 150 ELEECVARFVG-------KPAAIVFGMGYVTN--SAILPVLMRKGSLIISDSLNHNSIVN 200
EL E +A ++G P IV G S +L L+ G ++ +
Sbjct: 40 ELREAIAEWLGRRGGVDVPPEEIVVTNG-AQEALSLLLRALLNPGDEVLVPDPTYPGYEA 98
Query: 201 GARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIV-----EG-IYSMEG 254
AR +GA + + L A P+T K++ + G + S E
Sbjct: 99 AARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKT-----KLLYLNNPNNPTGAVLSEE- 152
Query: 255 ELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFG 314
+ E+ + KK+ I DEA++ + G L +D + I++ +F+K+FG
Sbjct: 153 ---ELEELAELAKKHGILIISDEAYA--ELVYDGEPPPALALLDAYERVIVLRSFSKTFG 207
Query: 315 SCG---GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKL 371
G GY+ E + L+ Y TS ++ +A +DG +
Sbjct: 208 LPGLRIGYLIAPPEEL--LERLKKLLPYTTSGPSTLSQAAAAAAL----DDGEEHLEELR 261
Query: 372 ARIRENSNFFRSELQKMGFEVLGDNDSPVMP-----IMLYNPAKIPA--FSRECLRQNVA 424
R R + L+++G V V P + L P R L V
Sbjct: 262 ERYRRRRDALLEALKELGPLV------VVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVV 315
Query: 425 VVT-VAFPATPLLLARARICISASHTKEDLIKALEVI 460
V AF R+ + +E+L +ALE +
Sbjct: 316 VRPGSAFG--EGGEGFVRLSFATP--EEELEEALERL 348
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 53.5 bits (129), Expect = 2e-08
Identities = 39/177 (22%), Positives = 61/177 (34%), Gaps = 20/177 (11%)
Query: 148 HNELEECVARF--VGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNH-NSIVNGARG 204
ELEE +AR G A+ G N A L L+ G +I D+ H + A
Sbjct: 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAEL 61
Query: 205 SGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFP---E 261
+GA P +A + +P ++VI E
Sbjct: 62 AGAKPVPV----PVDDAGYGGLDVAILEELKAKPNVALIVITPN----TTSGGVLVPLKE 113
Query: 262 IIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGG 318
I I K+Y + +D A + GA + + D++ + K+ G GG
Sbjct: 114 IRKIAKEYGILLLVDAASAGGASP------APGVLIPEGGADVVTFSLHKNLGGEGG 164
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 52.3 bits (126), Expect = 2e-07
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 33/219 (15%)
Query: 261 EIIAICKKYKAYIYLDEA-HSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG-- 317
I+ + +++ I DE + G + EL D I + +F+K++G G
Sbjct: 187 AIVELAREHDIIIISDEIYEELVYDGAEHPSILELA--GARDRTITINSFSKTYGMTGWR 244
Query: 318 -GYIAG-SKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIR 375
G++ G +ELI L+ Y + P Q AI + G + R
Sbjct: 245 IGWVVGPPEELIAALRK---LKSY-LTSCAPTPAQYA-AIAALNGPQSDEVVEEMREEYR 299
Query: 376 ENSNFFRSELQKM-GFEVLGDNDSPVMPIM--LYNPAKIP------AFSRECLRQ-NVAV 425
E + L ++ G V V P Y KIP F+++ L + VAV
Sbjct: 300 ERRDLLVEALNEIGGLSV-------VKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAV 352
Query: 426 VT-VAFPATPLLLARARICISASHTKEDLIKALEVISRV 463
V F P + +S + ++E L +AL ++R
Sbjct: 353 VPGSGFGEPP---GEGYVRLSLATSEETLEEALRRLARF 388
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 51.1 bits (123), Expect = 4e-07
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 31/198 (15%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHN--------SIVN 200
N LE+ VA GK AA+ G + N L R+G +I H + +
Sbjct: 35 NRLEDRVAELFGKEAALFVPSGTMANQLALMAHCRRGDEVICGEPAHIYFDETGGHAELG 94
Query: 201 GARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE--------GIYSM 252
GA+ LE +R P T ++ +E + S+
Sbjct: 95 GAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTG------LISLENTHNSAGGQVVSL 148
Query: 253 EGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKS 312
E EL EI AI +++ ++LD A A G V E+ T+ D + + +K
Sbjct: 149 E-EL---REIRAIAREHGIPLHLDGARLANAAVALGVIVKEI----TSYADSVSMSLSKG 200
Query: 313 FGS-CGGYIAGSKELIQY 329
G+ G +AGS + I Y
Sbjct: 201 LGAPVGSVLAGSDDFIAY 218
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 46.9 bits (112), Expect = 1e-05
Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 24/151 (15%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVL-MRKGSLIISDSLNHNSIVNGARGSGA 207
E+ A ++G A+ G L L + G +I S + N GA
Sbjct: 37 RRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGA 96
Query: 208 T-----IRVFQHN-TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPE 261
I N P +E + PRT K I+ + + G+ C
Sbjct: 97 KPVFVDIDPDTLNIDPDLIEAAIT-------PRT----KAIIPV-----HLAGQPCDMDA 140
Query: 262 IIAICKKYKAYIYLDEAHSIGAVGKTGRGVC 292
I+A+ K++ + D A + GA K G+ V
Sbjct: 141 IMALAKRHGLPVIEDAAQAHGATYK-GKKVG 170
>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase.
Aminoacylation of tRNA(Cys) with Cys, and cysteine
biosynthesis in the process, happens in
Methanocaldococcus jannaschii and several other archaea
by misacylation of tRNA(Cys) with O-phosphoserine (Sep),
followed by modification of the phosphoserine to
cysteine. In some species, direct tRNA-cys
aminoacylation also occurs but this pathway is required
for Cys biosynthesis. Members of this protein catalyze
the second step in this two step pathway, using
pyridoxal phosphate and a sulfur donor to synthesize Cys
from Sep while attached to the tRNA.
Length = 370
Score = 46.0 bits (109), Expect = 3e-05
Identities = 56/272 (20%), Positives = 111/272 (40%), Gaps = 32/272 (11%)
Query: 136 CSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNH 195
C R+D T ++ E +A F+G A V A++ L ++G ++ D L H
Sbjct: 41 CGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAH 100
Query: 196 NSIVNGARGSGATIRVFQH-NTPSHL--EEVLREQIAEGQPRTHRPWKKIMVI-VEGIYS 251
+ A +G ++ H P + E E I E + + +P ++ V+G Y
Sbjct: 101 YTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEY- 159
Query: 252 MEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTK 311
G L ++ +C++ + L+ A+++G + + + + D ++G+ K
Sbjct: 160 --GNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEI---------GADFIVGSGHK 208
Query: 312 SFGSCG--GYIAGSKELIQYLKYTCPAH-------LYATSISPPAAEQIISAIKVILGED 362
S + G G + S+E + L TS P + S V+ +
Sbjct: 209 SMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVV---E 265
Query: 363 GSSRGAQKLARIRENSNFFRSELQKMGFEVLG 394
R +++ + + +F +EL+ +GF LG
Sbjct: 266 RVKRWDEEV----KKTRWFVAELEDIGFIQLG 293
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 43.5 bits (103), Expect = 2e-04
Identities = 59/334 (17%), Positives = 102/334 (30%), Gaps = 49/334 (14%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVN-GARG--S 205
+LE A GK AA+ G N L + G +I H GA S
Sbjct: 35 AKLEARAAELFGKEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLS 94
Query: 206 GATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVI-----VEGIYSMEGELCKFP 260
G + E L I + H P ++ + +Y ++ +
Sbjct: 95 GVKLLPVPGENGKLTPEDLEAAIR-PRDDIHFPPPSLVSLENTTEGGTVYPLD----ELK 149
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYI 320
I A+ K+ ++LD A A G L + VD + +K G+ G +
Sbjct: 150 AISALAKENGLPLHLDGARLANAAAALG---VALKTY-KSGVDSVSFCLSKGGGAPVGAV 205
Query: 321 -AGSKELIQYLKYTCPA--HLYATSISPPAAEQIISA-IKVILGEDGSSRGAQKLARIRE 376
G+++ I + S ++A L D R + E
Sbjct: 206 VVGNRDFIARARRRRKQAGGGMRQS-------GFLAAAGLAALENDLWLRRLRH---DHE 255
Query: 377 NSNFFRSELQKMGFEVLGDNDSPVMPIMLYNP-------AKIPAFSRECLRQNVAVVTVA 429
+ L+++G G I+L +P ++ + E + V
Sbjct: 256 MARRLAEALEELG----GLESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYAW- 310
Query: 430 FPATPLLLARARICISASHTKEDLIKALEVISRV 463
R T+ED+ + L + V
Sbjct: 311 ------GEGGVRFVTHWDTTEEDVDELLSALKAV 338
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 43.5 bits (103), Expect = 2e-04
Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 19/212 (8%)
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG--- 317
++A+ +KY I D+ + G + G L +D I +G+F+K+ + G
Sbjct: 251 ALLALAEKYDVLIIEDDYY--GELRYDGPPPPPLKALDAPGRVIYLGSFSKTL-APGLRL 307
Query: 318 GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARI-RE 376
GY+ ELI+ L A + P + Q A L R ++L R
Sbjct: 308 GYVVAPPELIEKLL----RLKQAADLGPSSLSQAALAAF--LLSGHYDRHLRRLRREYAR 361
Query: 377 NSNFFRSELQK---MGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTV--AFP 431
+ L + + + L L + V V + AF
Sbjct: 362 RRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFS 421
Query: 432 ATPLLLARARICISASHTKEDLIKALEVISRV 463
A R+ S+ ++E++ + ++ ++ +
Sbjct: 422 ADGDPRNGLRLSFSSP-SEEEIEEGIKRLAAL 452
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 42.6 bits (101), Expect = 3e-04
Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 50/227 (22%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGR-GVCELLEVDTADVDIMMGTFTKSFGSCG 317
+ +C+K+ + DE + G+TG+ E V+ DI+ T K G G
Sbjct: 214 LKALRELCRKHGILLIADEVQT--GFGRTGKMFAFEHFGVE---PDIV--TLGKGLG--G 264
Query: 318 GY----IAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLAR 373
G + G +E++ H +P A ++ ++V+ E L
Sbjct: 265 GLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEG-------LLEN 317
Query: 374 IRENSNFFRSELQKM-----------------GFEVLGDNDSPVMPIMLYNPAKIPAFSR 416
E + R L+++ G E++ D + + +
Sbjct: 318 AAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRAT-----KPPDKELAAKIIK 372
Query: 417 ECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIKALEVISRV 463
L + + + P+ ++ R+ T+E++ + L+ +
Sbjct: 373 AALERGL----LLRPSGGNVI---RLLPPLIITEEEIDEGLDALDEA 412
>gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain.
Length = 417
Score = 40.1 bits (94), Expect = 0.002
Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 23/161 (14%)
Query: 136 CSSRVDGGTLMVHN----ELEECVAR-FVGKPAAIVFGMGYVTNSAILPVLMRKGSLIIS 190
C + V+ G L+ H+ E ++ AR F + V N + + G ++
Sbjct: 52 CIADVELGDLLDHSGPIKEAQKYAARVFGADKSYFVVNGTSGANKTVGMAVCTPGDTVLI 111
Query: 191 DSLNHNSIVNGARGSGATIRVFQHNT----------PSH--LEEVLREQIAEGQPRTHRP 238
D H SI + SGAT V+ T P H EE ++E +AE P
Sbjct: 112 DRNCHKSIHHALMMSGAT-PVYLEPTRNAYGIIGGIPLHEFQEETIKEALAEVPPAK--- 167
Query: 239 WKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAH 279
++ VI G Y +G + EI+ YI D A
Sbjct: 168 GPRLAVITNGTY--DGTIYNAKEIVDTLGHLSDYILFDSAW 206
>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 40.0 bits (94), Expect = 0.002
Identities = 38/155 (24%), Positives = 57/155 (36%), Gaps = 43/155 (27%)
Query: 147 VHNELEECVARFVGKPAAIVFGMGY---VTN---SAILPVLM---RKGSLIISDSLNHNS 197
E +E AR VFG + V N +A V+ G ++ D H S
Sbjct: 71 PIKEAQELAAR--------VFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKS 122
Query: 198 IVNGARGSGATIRVFQHNTPSHL-------------EEVLREQIAEGQPRTHRPWKKIMV 244
I +G +GAT V+ + + L E +L AE K+ V
Sbjct: 123 IHHGLILAGAT-PVYLEPSRNPLYGIIGGIPLETFKEALLAHPDAE----------KLAV 171
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAH 279
I Y +G +I+ + Y A++ DEAH
Sbjct: 172 ITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAH 204
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 39.2 bits (92), Expect = 0.004
Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 33/201 (16%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGAT 208
N LE+ +A GK AA+ G N L + G +I H GA
Sbjct: 38 NALEQRIAELFGKEAALFVPSGTQANQLALAAHCQPGESVICHETAHIYT----DECGA- 92
Query: 209 IRVFQHNTPSH----------LEEVLREQIAEGQPRTHRPWKKIMVIV----EG--IYSM 252
F E+V + H + V+ EG +Y +
Sbjct: 93 PEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDD---IHHAPTPLAVLENTATEGGTVYPL 149
Query: 253 EGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKS 312
+ EL I A+CK++ +++D A A+ G + + + VD + TK
Sbjct: 150 D-EL---EAISAVCKEHGLPLHMDGARLANALVALGVALKTI----KSYVDSVSFCLTKG 201
Query: 313 FGSCGGYI-AGSKELIQYLKY 332
G+ G I G+++ + +
Sbjct: 202 GGAPVGAIVFGNRDFAKRARR 222
>gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase
family. The members of this family are probably all
pyridoxal-phosphate-dependent aminotransferase enzymes
with a variety of molecular functions. The family
includes StsA, StsC and StsS. The aminotransferase
activity was demonstrated for purified StsC protein as
the L-glutamine:scyllo-inosose aminotransferase
EC:2.6.1.50, which catalyzes the first amino transfer in
the biosynthesis of the streptidine subunit of
streptomycin.
Length = 362
Score = 38.4 bits (90), Expect = 0.006
Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 26/154 (16%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVL-MRKGSLIISDSLNHNSIVNGARGSGA 207
E+ A ++G A+ G L L + G +I + + N GA
Sbjct: 27 RAFEKAFAAYLGVKHALAVSSGTSALHLALRALGIGPGDEVIVPAFTFVATANAVLQLGA 86
Query: 208 TIRVF------QHN-TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFP 260
T VF +N P+ +E + PRT K IM + + G+
Sbjct: 87 TP-VFVDVDPDTYNIDPAAIEAAI-------TPRT----KAIMPV-----HLYGQPADMD 129
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCEL 294
I AI ++ + D AH+ GA K G+ V
Sbjct: 130 AIRAIAAEHGLPVIEDAAHAHGATYK-GKRVGTF 162
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 37.8 bits (88), Expect = 0.010
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 244 VIVEGIYSMEGELCKFPE-----IIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVD 298
+++E I +G L + + C+++ +D+ +G+TG+ +
Sbjct: 211 IVIETIQG-DGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ--GLGRTGK----WSSIS 263
Query: 299 TADVDIMMGTFTKSFGSCGGY----IAGSKELIQYLKYTCPAHLYATSISPPAAEQIISA 354
++ + +F KS G I G KE+++ L+ PAHL+ T +P + ++
Sbjct: 264 HFNITPDLMSFGKSLAG--GMPMSAIVGRKEIMESLE--APAHLFTTGANPVSCAAALAT 319
Query: 355 IKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGD 395
I +I E R A+K R+ F + K + +GD
Sbjct: 320 IDMIEDESLLQRSAEKGEYARK---RFDQWVSK--YNFVGD 355
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 37.2 bits (87), Expect = 0.014
Identities = 33/147 (22%), Positives = 48/147 (32%), Gaps = 28/147 (19%)
Query: 147 VHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLM---RKGSLIISDSLNHNSIVNGAR 203
E +E AR G G T+S+ V++ G I+ D H S++NG
Sbjct: 60 PIKEAQELAARAFGAKHTFFLVNG--TSSSNKAVILAVCGPGDKILIDRNCHKSVINGLV 117
Query: 204 GSGAT-----------IRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSM 252
SGA + P ++ L E P K VI Y
Sbjct: 118 LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIE----------HPDAKAAVITNPTY-- 165
Query: 253 EGELCKFPEIIAICKKYKAYIYLDEAH 279
G +I+ + +DEAH
Sbjct: 166 YGICYNLRKIVEEAHHRGLPVLVDEAH 192
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 36.5 bits (85), Expect = 0.024
Identities = 69/371 (18%), Positives = 123/371 (33%), Gaps = 89/371 (23%)
Query: 122 PRVIESLKKYSPSTCSSRVDGG---TLMVHNELEEC---VARFVGKPAA--IVFGMGYVT 173
V+++L++Y + G EE VA F+ P+ I+F G T
Sbjct: 13 QAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEEIIFTSG--T 70
Query: 174 NSAI-------LPVLMRKGSLIISDS---LNHNSIVNGARGSGATIRVF-----QHNTPS 218
AI L +++++ N A+ +GAT+RV
Sbjct: 71 TEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLD 130
Query: 219 HLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEA 278
LE++L + +V + + ++ G + EI + +Y A + +D A
Sbjct: 131 ALEKLLTPRTK-------------LVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAA 177
Query: 279 HSIGAVGKTGRGVCELLEVDTADVDIMMGTFT--KSFGSCG-GYIAGSKELIQYLK---- 331
++G +D + + F+ K +G G G + G ++L++ L
Sbjct: 178 QAVGH-----------RPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLG 226
Query: 332 ----YTCPAHLYATSISPP----AAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRS 383
+ T P A I+ I + LG LA I +
Sbjct: 227 GGGMIDTVSLQETTFADAPSKFEAGTPNIAGI-IGLGA-----ALDYLAEIGLEAIEKHE 280
Query: 384 -ELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFP-----ATPLLL 437
EL +E L I LY P + ++++ FP LL
Sbjct: 281 RELAAYLYERLLAIPG----IRLYGPPA---------ERRPSIISFNFPGVHPHDVATLL 327
Query: 438 ARARICISASH 448
I + + H
Sbjct: 328 DERGIAVRSGH 338
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 36.4 bits (85), Expect = 0.030
Identities = 35/175 (20%), Positives = 68/175 (38%), Gaps = 40/175 (22%)
Query: 260 PEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGS--CG 317
EI K++ A + +D S+G L+VD +D+ + K+ G+
Sbjct: 151 KEIAKAAKEHGALLIVDAVSSLGGEP---------LKVDEWGIDVAITGSQKALGAPPGL 201
Query: 318 GYIAGSKELIQYLKYTCPAHLY--------------ATSISPP-----AAEQIISAIKVI 358
++A S+ ++ ++ Y +T +PP A + A+ +I
Sbjct: 202 AFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALRE---ALDLI 258
Query: 359 LGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIM--LYNPAKI 411
L E +R +AR R + R+ L+ +G E+ D P + + P +
Sbjct: 259 LEEGLEAR----IARHRRLAEALRAGLEALGLELFAD-PERRSPTVTAIKVPEGV 308
>gnl|CDD|234269 TIGR03588, PseC, UDP-4-keto-6-deoxy-N-acetylglucosamine
4-aminotransferase. This family of enzymes are
aminotransferases of the pfam01041 family involved in
the biosynthesis of pseudaminic acid. They convert
UDP-4-keto-6-deoxy-N-acetylglucosamine into
UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic
acid has a role in surface polysaccharide in Pseudomonas
as well as in the modification of flagellin in
Campylobacter and Helicobacter species.
Length = 380
Score = 36.1 bits (84), Expect = 0.033
Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 25/146 (17%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAI--LPVLMR-----KGSLIISDSLNHNSIVNG 201
EE +A +VG A+ F NSA L + G + + + + N
Sbjct: 32 PAFEEALAEYVGAKYAVAF------NSATSALHIACLALGVGPGDRVWTTPITFVATANC 85
Query: 202 ARGSGATIRVF---QHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCK 258
A GA + F +T + E+ L +++A + K IV ++ G+
Sbjct: 86 ALYCGAKV-DFVDIDPDTGNIDEDALEKKLAAAKG------KLPKAIVPVDFA--GKSVD 136
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAV 284
I A+ KK+ I D +H++GA
Sbjct: 137 MQAIAALAKKHGLKIIEDASHALGAE 162
>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase. This family belongs
to the pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Cys-tRNA(Cys) is
produced by O-phosphoseryl-tRNA synthetase which ligates
O-phosphoserine (Sep) to tRNA(Cys), and
Sep-tRNA:Cys-tRNA synthase (SepCysS) converts
Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea.
SepCysS forms a dimer, each monomer is composed of a
large and small domain; the larger, a typical pyridoxal
5'-phosphate (PLP)-dependent-like enzyme fold. In the
active site of each monomer, PLP is covalently bound to
a conserved Lys residue near the dimer interface.
Length = 361
Score = 34.3 bits (79), Expect = 0.12
Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 45/241 (18%)
Query: 176 AILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHN--TPSHLE-EVLREQIAEGQ 232
A++ L KG ++ D L H + A +G +R + H+ E E I E +
Sbjct: 74 AVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVK 133
Query: 233 PRTHRPWKKIMVI-VEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGV 291
+P ++ V+G Y G L +I +C +Y + L+ A+++G + +G+ +
Sbjct: 134 DEFGKPPALALLTHVDGNY---GNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKEL 190
Query: 292 CELLEVDTADVDIMMGTFTKSFGSCG--GYIAGSKELI-------QYLKYTCPAHLYATS 342
D ++G+ KS + G +A ++E Q K L T
Sbjct: 191 ---------GADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTL 241
Query: 343 ISPPAAEQIISAIKVILGEDGSSRGAQKLARIR------ENSNFFRSELQKM-GFEVLGD 395
P + S V R++ E + +F +EL+K+ G + LG+
Sbjct: 242 RGAPLVTLMASFPHV-------------KERVKRWDEEVEKARWFVAELEKIEGIKQLGE 288
Query: 396 N 396
Sbjct: 289 K 289
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 34.1 bits (79), Expect = 0.15
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 216 TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYL 275
P +E + PRT K I+ + + G I+AI K++ +
Sbjct: 95 DPELIEAAIT-------PRT----KAIIPV-----HLYGNPADMDAIMAIAKRHGLPVIE 138
Query: 276 DEAHSIGAVGKTGRGV 291
D A ++GA K GR V
Sbjct: 139 DAAQALGATYK-GRKV 153
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 33.8 bits (78), Expect = 0.17
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 43/154 (27%)
Query: 254 GELCKFPEIIAICK--KYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVD------IM 305
G L E+ A+ + + +DEA+ E + ++ I+
Sbjct: 159 GTLLPREELRALLEALPEGGLVVIDEAY------------IEFSPESSLELLKYPPNLIV 206
Query: 306 MGTFTKSFGSCG---GYIAGSKELIQYLK-----YTCPAHLYATSISPPAAEQIISAIKV 357
+ TF+K+FG G GY + ELI L + + A +I+ +
Sbjct: 207 LRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYL----- 261
Query: 358 ILGEDGSSRGAQKLARIRENSNFFRSELQKMGFE 391
+ + RIRE + L+ +G
Sbjct: 262 ----------EESVERIREERERLYAALKALGLF 285
>gnl|CDD|213914 TIGR04301, ODC_inducible, ornithine decarboxylase SpeF. Members of
this family are known or trusted examples of ornithine
decarboxylase, all encoded in the immediate vicinity of
an ornithine-putrescine antiporter. Decarboxylation of
ornithine to putrescine, followed by exchange of a
putrescine for a new ornithine, is a proton-motive cycle
that can be induced by low pH and protect a bacterium
against transient exposure to acidic conditions.
Length = 719
Score = 33.9 bits (78), Expect = 0.21
Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 45/147 (30%)
Query: 136 CSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMG---YV------TNSAILPVLMRKGS 186
C++ V G L++H E C A+ + AA VF +V +N +L L+ G
Sbjct: 160 CNADVALGDLLIH-EGAPCDAQ---QHAAKVFNADKTYFVLNGTSASNKVVLNALLTPGD 215
Query: 187 LIISDSLNHNSIVNGAR-GSGATIRVFQHNTPSHL-------------------EEVLRE 226
L++ D NH S +GA +GA TP +L EE LRE
Sbjct: 216 LVLFDRNNHKSNHHGALIQAGA--------TPVYLETARNPFGFIGGIDEHCFEEEYLRE 267
Query: 227 QIAEGQP---RTHRPWKKIMVIVEGIY 250
I E P + RP+ ++ +I G Y
Sbjct: 268 LIREVAPERAKEKRPF-RLAIIQLGTY 293
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 33.5 bits (77), Expect = 0.25
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 316 CGGYIAGSKELIQYLKYTCPAHLYATSIS--------PPAAEQIISAIKVILGEDGSSRG 367
GG + SK ++YL P Y T A+ A+ LG +G +
Sbjct: 233 AGGILFRSKSYLKYLSVDAP---YLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKI 289
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRE 417
+ EN+ + EL+K+GFE + + PV+ I+ + ++
Sbjct: 290 VAECM---ENTRYLVEELKKIGFEPVIE---PVLNIVAFEVDDPEEVRKK 333
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 32.6 bits (75), Expect = 0.49
Identities = 55/246 (22%), Positives = 102/246 (41%), Gaps = 54/246 (21%)
Query: 110 YLGFAASDEYCTPR-VIESLKKYSPSTCSSRVDGG--TLMV-----HNELEECVARFVGK 161
YL AA+ + P+ VI+++ +Y ++ V G TL V + + E VA+F+
Sbjct: 21 YLDSAATSQ--KPQQVIDAVAEYY-RNSNANVHRGIHTLSVRATEAYEAVREKVAKFINA 77
Query: 162 PAA--IVF------GMGYVTNSAILPVLMRKGSLIISDSLNHNSIVN---GARGSGATIR 210
+ IVF + V S L ++IS+ +H +IV A +GAT++
Sbjct: 78 ASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLK 137
Query: 211 VFQHNTP-----SHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAI 265
+ LE++L E+ K+ V + + ++ G + EI +
Sbjct: 138 FIPLDDDGTLDLDDLEKLLTEKT------------KL-VAITHVSNVLGTVNPVEEIAKL 184
Query: 266 CKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFT--KSFGSCG-GYIAG 322
+ A + +D A ++ + VD +D F+ K +G G G + G
Sbjct: 185 AHQVGAKVLVDGAQAVPH-----------MPVDVQALDCDFYVFSGHKMYGPTGIGVLYG 233
Query: 323 SKELIQ 328
+EL++
Sbjct: 234 KEELLE 239
>gnl|CDD|130395 TIGR01328, met_gam_lyase, methionine gamma-lyase. This model
describes a methionine gamma-lyase subset of a family of
PLP-dependent trans-sulfuration enzymes. The member from
the parasite Trichomonas vaginalis is described as
catalyzing alpha gamma- and alpha-beta eliminations and
gamma-replacement reactions on methionine, cysteine, and
some derivatives. Likewise, the enzyme from Pseudomonas
degrades cysteine as well as methionine [Energy
metabolism, Amino acids and amines].
Length = 391
Score = 32.6 bits (74), Expect = 0.49
Identities = 51/240 (21%), Positives = 83/240 (34%), Gaps = 48/240 (20%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDS----LNHNSIVNGARGSG 206
LE +A G AA+ G +A L +++ G +ISD + + G
Sbjct: 64 LEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFG 123
Query: 207 ATIRVFQHNTPSHLEEVLREQIAEGQPRT-----HRPWKKIMVIVEGIYSMEGELCKFPE 261
+ P EEV A + T P M +++
Sbjct: 124 IQVDFINMAIP---EEVK----AHIKDNTKIVYFETPANPTMKLID-------------- 162
Query: 262 IIAICKKYKAYIYLDEAHSIGA---VGKTGRGVCELLEVDTADVDIMMGTFTKSFGS--- 315
+ +C+ +AHS G V T V VD+++ + TK G
Sbjct: 163 MERVCR---------DAHSQGVKVIVDNTFATPMLTNPVALG-VDVVVHSATKYIGGHGD 212
Query: 316 -CGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVI-LGEDGSSRGAQKLAR 373
G I G EL+Q ++ + + ISP A I+ +K + + S A K+A
Sbjct: 213 VVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLNIRMKRHSENAMKVAE 272
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 32.1 bits (74), Expect = 0.60
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 44/157 (28%)
Query: 151 LEEC---VARFVG-KPAAIVFGMGYVT-------NSAILPVL-----MRKGSLIISDSLN 194
+EE +A+ +G P I+F T N AI +KG II+ ++
Sbjct: 46 VEEAREQIAKLLGADPEEIIF-----TSGATESNNLAIKGAALAYRNAQKGKHIITSAIE 100
Query: 195 HNSIVNGAR-----GSGAT-IRVFQHN---TPSHLEEVLREQIAEGQPRTHRPWKKIMVI 245
H +++N R G T + V N LEE LR P T I+V
Sbjct: 101 HPAVLNTCRYLERQGFEVTYLPV-DSNGLVDLEQLEEALR-------PDT------ILVS 146
Query: 246 VEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIG 282
+ + G + EI ICK+ ++D ++G
Sbjct: 147 IMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVG 183
>gnl|CDD|239509 cd03416, CbiX_SirB_N, Sirohydrochlorin cobalt chelatase (CbiX) and
sirohydrochlorin iron chelatase (SirB), N-terminal
domain. SirB catalyzes the ferro-chelation of
sirohydrochlorin to siroheme, the prosthetic group of
sulfite and nitrite reductases. CbiX is a
cobaltochelatase, responsible for the chelation of Co2+
into sirohydrochlorin, an important step in the vitamin
B12 biosynthetic pathway. CbiX often contains a
C-terminal histidine-rich region that may be important
for metal delivery and/or storage, and may also contain
an iron-sulfur center. Both are found in a wide range of
bacteria. This subgroup also contains single domain
proteins from archaea and bacteria which may represent
the ancestral form of class II chelatases before domain
duplication occurred.
Length = 101
Score = 29.5 bits (67), Expect = 1.2
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 416 RECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVGDLVGIKYFPA 474
E Q + V PL L H KED+ AL V I+Y P
Sbjct: 51 DELAAQGATRIVV----VPLFLLAGG------HVKEDIPAALAAARARHPGVRIRYAPP 99
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid
transport and metabolism].
Length = 413
Score = 31.0 bits (71), Expect = 1.3
Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 65/312 (20%)
Query: 115 ASDEYCTPRVIESL-----KKYSPSTCSSRVDGGTLMVHNELEE-CVARFVGKPAAIVFG 168
AS+ + +P V+E+ KY+ R GG V +E+EE + R A +FG
Sbjct: 33 ASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYV-DEVEELAIER-----AKKLFG 86
Query: 169 MGYV---------TNSAILPVLMRKGSLIISDSLN------HNSIVNGARGSGATIRVFQ 213
Y N A+ L++ G I+ L+ H S VN SG V
Sbjct: 87 AEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNF---SGKLFNVVS 143
Query: 214 H--NTPSHL---EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKK 268
+ + + L +EV + E +P+ +I+ G S F I +
Sbjct: 144 YGVDPETGLIDYDEV-EKLAKEVKPK---------LIIAG-GSAYSRPIDFKRFREIADE 192
Query: 269 YKAYIYLDEAHSIG--AVGKTGRGVCELLEVDTADVDIMMGTFTKSF-GSCGGYIAG-SK 324
AY+ +D AH G A G + D++ T K+ G GG I +
Sbjct: 193 VGAYLMVDMAHVAGLIAGGVHPNPLPH--------ADVVTTTTHKTLRGPRGGIILTNDE 244
Query: 325 ELIQYL-KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRS 383
EL + + P P +I+A V E + ++ +N+
Sbjct: 245 ELAKKINSAVFPGLQ-----GGPL-MHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAE 298
Query: 384 ELQKMGFEVLGD 395
L++ GF+V+
Sbjct: 299 ALKERGFKVVSG 310
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 31.3 bits (71), Expect = 1.3
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 260 PEIIAICKKYKAYIYLDEAHSIGAVGKTGRG-VCELLEVDTADVDIMMGTFTKSFGS--- 315
+ +C ++ A + LDE + +G+TG+ CE V DI+ K+ G
Sbjct: 255 TAVRKLCDEFGALLILDEVQT--GMGRTGKMFACEHENVQP---DIL--CLAKALGGGVM 307
Query: 316 -CGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQK 370
G IA ++E+ L H +P A ++ I V+L ++ ++ QK
Sbjct: 308 PIGATIA-TEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQK 362
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 30.9 bits (70), Expect = 1.5
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 40/187 (21%)
Query: 150 ELEECVARFVGKPAAIVFGMGYVTNS-AILPVLMRKGSLIISDSLNHNSIVNGARGSGAT 208
LEE ++ G+P I G +T + ++ +L + +I + AR A
Sbjct: 44 WLEEEFSKLFGEPIVITAG---ITEALYLIGILALRDRKVIIPRHTYGEYERVARFFAAR 100
Query: 209 IRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIV------EGIYSMEGELCKFPEI 262
I + N P LEE++ + +V +G + EL +
Sbjct: 101 I-IKGPNDPEKLEELVE--------------RNSVVFFCNPNNPDGKFYNFKELKPL--L 143
Query: 263 IAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG---GY 319
A+ + A + LDEA I V K E + I + TFTKS+G G GY
Sbjct: 144 DAVEDR-NALLILDEAF-IDFVKKPESPEGENI--------IKLRTFTKSYGLPGIRVGY 193
Query: 320 IAGSKEL 326
+ G +E
Sbjct: 194 VKGFEEA 200
>gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase.
Length = 380
Score = 30.4 bits (69), Expect = 2.0
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 34/190 (17%)
Query: 115 ASDEYCTPRVIESL-----KKYSPSTCSSRVDGGTLMVHNELEE-CVARFVGKPAAIVFG 168
AS+ + + V+E+L KY+ R GG V +E+E R A +FG
Sbjct: 27 ASENFTSRAVMEALGSVLTNKYAEGYPGKRYYGGCEYV-DEVETLAQDR-----AKELFG 80
Query: 169 MGYV---------TNSAILPVLMRKGSLIISDSLNHNS-IVNGARGSGATIRVFQHNTPS 218
+ V N A+ L+ G I+ L H + +G + F + P
Sbjct: 81 LDGVNVQPLSGSQANLAVYTALLNPGDRIMGLDLPHGGHLTHGYPVN--FSGKFFESMPY 138
Query: 219 HLEE----VLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIY 274
++ + +Q+ + + +P K++V YS + +F EI + AY+
Sbjct: 139 GVDPDTGLIDYDQLEK-NAKLFKP--KLIVAGTSAYSRLIDYARFREI---ADEVGAYLM 192
Query: 275 LDEAHSIGAV 284
+D AH G V
Sbjct: 193 VDMAHIAGLV 202
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 30.2 bits (69), Expect = 2.2
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 33/141 (23%)
Query: 148 HNELEECVARFVGKPAAIVF--GMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGS 205
+ LE+ +A G AA+ F GM + S +L L++ G + +V
Sbjct: 42 VDALEKKLAALEGGEAALAFSSGMAAI--STVLLALLKAG----------DHVVASDDLY 89
Query: 206 GATIRVFQHNTPSH----------LEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGE 255
G T R+F+ P E L I +P T +V VE + +
Sbjct: 90 GGTYRLFERLLPKLGIEVTFVDPDDPEALEAAI---KPETK------LVYVESPTNPTLK 140
Query: 256 LCKFPEIIAICKKYKAYIYLD 276
+ I + ++ A + +D
Sbjct: 141 VVDIEAIAELAHEHGALLVVD 161
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 721
Score = 30.5 bits (69), Expect = 2.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 67 FGRPISSAPDAWFDVVERFSN-DSNKTLKRTNKVNRCLNLGSYNYLGFAASDE--YCTPR 123
F + I ++ A D V R S+ ++++ N N + LG+ N GF A++ Y +
Sbjct: 426 FEQLIYTSIRA-LDRVSRVSDLSCAPSIEKGNAANHAVGLGAMNLHGFLATNHIYYDSKE 484
Query: 124 VIE 126
++
Sbjct: 485 AVD 487
>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and
metabolism].
Length = 407
Score = 30.1 bits (68), Expect = 2.8
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 22/117 (18%)
Query: 206 GATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAI 265
G + P LEE + + +A +V++ + G+L I A+
Sbjct: 145 GIGYDLEGVIAPRALEEAITDDVA-------------VVLLSHVNYKTGQLLDMRAITAL 191
Query: 266 CKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAG 322
++ A + D AHS GAV +++ A D +G K G AG
Sbjct: 192 AHQHGALVGWDLAHSAGAVP---------VDLHAAGADFAIGCSYKYLNGGPGAPAG 239
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 29.9 bits (68), Expect = 3.3
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 315 SCGGYIAGSKELIQYLKYTCPAHLYATSIS--------PPAAEQIISAIKVI--LGEDGS 364
GG + + + L P Y TS A + + V+ LG +G
Sbjct: 227 PAGGILFRDESYLDALAVDTP---YLTSKKQATLTGTRSGAG--VAATYAVMKYLGREGY 281
Query: 365 SRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPI 403
+ + R EN+ + EL++ GFE + + PV+ I
Sbjct: 282 RKVVE---RCMENTRWLAEELKERGFEPVIE---PVLNI 314
>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. This group contains proteins that
share the characteristic catalytic and structural
zinc-binding sites of the zinc-dependent alcohol
dehydrogenase family. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the cleft
between the catalytic and coenzyme-binding domains at
the active site, and coenzyme binding induces a
conformational closing of this cleft. Coenzyme binding
typically precedes and contributes to substrate binding.
In human ADH catalysis, the zinc ion helps coordinate
the alcohol, followed by deprotonation of a histidine
(His-51), the ribose of NAD, a serine (Ser-48), then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 332
Score = 29.6 bits (67), Expect = 4.0
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 422 NVAVVTVAFPATPLLLARARICISASHTKEDLIKALEVISR------VGDLVGIKYFPAE 475
NV L+L RI S S TK D+ +AL+++ + +V ++ E
Sbjct: 257 NVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKPVIDRVVSLEDI-NE 315
Query: 476 PRKQMEEEERM 486
+ ++ + +
Sbjct: 316 ALEDLKSGKVV 326
>gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase;
Validated.
Length = 332
Score = 29.4 bits (66), Expect = 4.6
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 371 LARIRENSNFFRSELQKMGFEVLGDNDSPVMPIML 405
L + ++ + L+ MGF GD + + M+
Sbjct: 245 LDIMENERSYLINNLEAMGFRAAGDPSANFITFMI 279
>gnl|CDD|148445 pfam06838, Alum_res, Aluminium resistance protein. This family
represents the aluminium resistance protein, which
confers resistance to aluminium in bacteria. Structural
characterisation has shown proteins in this family bind
a pyridoxal-5'-phosphate cofactor, and that they belongs
to the PLP dependent aminotransferase superfamily.
Crystal packing analysis suggests that in solution, a
tetramer may be the stable oligomeric form. This is in
contrast to most other aminotransferases which form
dimers (information from TOPSAN).
Length = 405
Score = 29.2 bits (66), Expect = 4.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 302 VDIMMGTFTKSFG----SCGGYIAGSKELIQYLKY 332
D++ G+ K+ G GGYIAG +EL++ Y
Sbjct: 214 ADLIAGSLIKNPGGGIAKTGGYIAGKEELVEQASY 248
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 29.1 bits (66), Expect = 5.5
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 21/135 (15%)
Query: 148 HNELEECVARFVGKPAAIVF--GMGYVTNSAILPVLMRKGSLII-SDSL---NHNSIVNG 201
+ LEE +A G AA+ F GM + + L L++ G ++ +D L +
Sbjct: 54 RDALEERIAALEGGEAALAFSSGMAAIFAA--LLALLKAGDHVVATDDLYGGTYRLFEKV 111
Query: 202 ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPE 261
G + + LE + +P T V +E + ++
Sbjct: 112 LPRFGIEVTFVDPSDLDALEAAI-------KPNTK------AVFLETPTNPLLKVVDIEA 158
Query: 262 IIAICKKYKAYIYLD 276
I I KK+ A + +D
Sbjct: 159 IAKIAKKHGALVVVD 173
>gnl|CDD|226585 COG4100, COG4100, Cystathionine beta-lyase family protein involved
in aluminum resistance [Inorganic ion transport and
metabolism].
Length = 416
Score = 28.9 bits (65), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 302 VDIMMGTFTKSFG----SCGGYIAGSKELIQYLKY 332
D++ G+ K+ G GGYIAG EL++ Y
Sbjct: 224 ADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAAY 258
>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). Every member of this clade is from a
genome which possesses most of the lysine biosynthesis
pathway but lacks any of the known aminotransferases,
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Although there is no experimental characterization of
any of the sequences in this clade, a direct pathway is
known in plants and Chlamydia and the clade containing
the Chlamydia gene is a neighboring one in the same
pfam00155 superfamily so it seems quite reasonable that
these enzymes catalyze the same transformation.
Length = 383
Score = 28.9 bits (65), Expect = 6.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA-DVDIMMGTFTKSFGSCG 317
F E++ K+Y + D A+S + G LEVD A DV I + +K++ G
Sbjct: 186 FKELVEFAKEYNIIVCHDNAYS--EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTG 243
Query: 318 ---GYIAGSKELI 327
G G+ +LI
Sbjct: 244 WRIGMAVGNADLI 256
>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
Length = 364
Score = 28.9 bits (65), Expect = 6.3
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIM 305
EI +C++ K + D A ++G + ++VD VD+M
Sbjct: 159 EIGELCREKKVLFHTDAAQAVGKIP---------VDVDDLGVDLM 194
>gnl|CDD|180685 PRK06767, PRK06767, methionine gamma-lyase; Provisional.
Length = 386
Score = 29.0 bits (65), Expect = 6.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 151 LEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLII 189
EE +A G A+ FG G SA L ++ G II
Sbjct: 66 FEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHII 104
>gnl|CDD|240664 cd12188, SDH, Saccharopine Dehydrogenase NAD-binding and catalytic
domains. Saccharopine Dehydrogenase (SDH) catalyzes the
final step in the reversible NAD-dependent oxidative
deamination of saccharopine to alpha-ketoglutarate and
lysine, in the alpha-aminoadipate pathway of L-lysine
biosynthesis. SHD is structurally related to formate
dehydrogenase and similar enzymes, having a 2-domain
structure in which a Rossmann-fold NAD(P)-binding domain
is inserted within the linear sequence of a catalytic
domain of related structure.
Length = 351
Score = 28.7 bits (65), Expect = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 281 IGAVGKTGRGVCELLE 296
IGA+G+ G G +LLE
Sbjct: 189 IGALGRCGSGAVDLLE 204
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 28.7 bits (65), Expect = 7.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGR 289
+PEI IC+KY + DE I G+TG
Sbjct: 242 WPEIQRICRKYDILLVADEV--ICGFGRTGE 270
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 28.7 bits (64), Expect = 8.3
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCEL---LEVDTADVDIMMGTFTKSFGS 315
+PEI IC++Y + DE IG G+TG E DT + I G T +
Sbjct: 245 WPEIQRICRQYDVLLCADEV--IGGFGRTGEWFAHEHFGFEPDT--LSIAKG-LTSGYVP 299
Query: 316 CGGYIAGSKELIQYL--KYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLAR 373
GG + SK + + L + AH S P AA I+ +K L ++G R
Sbjct: 300 MGGLVL-SKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA-LRDEGVVT------R 351
Query: 374 IRENSNFFRSELQKMGFEVLGDN 396
+++++ + LQ+ EV GD+
Sbjct: 352 VKDDTGPY---LQRCLREVFGDH 371
>gnl|CDD|107266 cd06271, PBP1_AglR_RafR_like, Ligand-binding domain of DNA
transcription repressors specific for raffinose (RafR)
and alpha-glucosides (AglR) which are members of the
LacI-GalR family of bacterial transcription regulators.
Ligand-binding domain of DNA transcription repressors
specific for raffinose (RafR) and alpha-glucosides
(AglR) which are members of the LacI-GalR family of
bacterial transcription regulators. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 268
Score = 28.3 bits (64), Expect = 8.3
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 66 CFGRPISSAPDAWFDV 81
GR P W D
Sbjct: 87 THGRTELGDPHPWVDF 102
>gnl|CDD|234755 PRK00419, PRK00419, DNA primase small subunit; Reviewed.
Length = 376
Score = 28.4 bits (64), Expect = 9.4
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 311 KSFGSCGGYIAGSKELIQYLKYTCPAHLY 339
SF EL YL+ T P H+Y
Sbjct: 50 LSFSD-------LGELRDYLRRTAPRHVY 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,539,896
Number of extensions: 2538324
Number of successful extensions: 2571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2476
Number of HSP's successfully gapped: 85
Length of query: 489
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 388
Effective length of database: 6,457,848
Effective search space: 2505645024
Effective search space used: 2505645024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)