RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046230
(489 letters)
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 374 bits (963), Expect = e-127
Identities = 116/405 (28%), Positives = 203/405 (50%), Gaps = 42/405 (10%)
Query: 69 RPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIE-- 126
RPI S D + R R L GS +YLG R+I+
Sbjct: 28 RPIQSKQDTEVKIDGR----------------RVLMFGSNSYLGLTTD-----TRIIKAA 66
Query: 127 --SLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRK 184
+L+KY SR GTL +H ELEE ++ +VGK AAI+F G+ +N L LM +
Sbjct: 67 QDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGR 126
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMV 244
I+ D +H SI++G+R S + + + HN L L ++
Sbjct: 127 NDYILLDERDHASIIDGSRLSFSKVIKYGHNNMEDLRAKLSR---------LPEDSAKLI 177
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI 304
+GI+SMEG++ PE+ +I ++ A + +D+AHS+G +G G G + DVD+
Sbjct: 178 CTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGL-NDDVDL 236
Query: 305 MMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGS 364
+MGTF+KS S GG++AG ++I +LK+ + +++ S++P + + A+++I E
Sbjct: 237 IMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEP-- 294
Query: 365 SRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVA 424
+ + ++ +N+++ +++L GF+ LG +SP++PI + + K ++ V
Sbjct: 295 ----EHIEKLWKNTDYAKAQLLDHGFD-LGATESPILPIFIRSNEKTFWVTKMLQDDGVF 349
Query: 425 VVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
V V PA P + R + A+HT + + +A+E + +V +
Sbjct: 350 VNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAEV 394
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 363 bits (933), Expect = e-122
Identities = 109/374 (29%), Positives = 179/374 (47%), Gaps = 26/374 (6%)
Query: 101 RCLNLGSYNYLGFAASDEYCTPRVIE----SLKKYSPSTCSSRVDGGTLMVHNELEECVA 156
+ LG+YNY+G P VI +L+K+ TC SR+ GT H E+E+ +
Sbjct: 65 DTILLGTYNYMGMTFD-----PDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALR 119
Query: 157 RFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARGSGATIRVFQHNT 216
F G AIVF GY+ N I+ L KG +I D+ +H SI +G + A I F+HN+
Sbjct: 120 DFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNS 179
Query: 217 PSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLD 276
L++ L +V++EG+YSM G++ E++A+ KK+ A + +D
Sbjct: 180 VEDLDKRLGR---------LPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD 230
Query: 277 EAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPA 336
EAHS+G G GRGV E + +D ++GTF+KS G+ GG++ + + ++ C
Sbjct: 231 EAHSMGFFGPNGRGVYEAQGL-EGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRP 289
Query: 337 HLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLG-D 395
+++ S+ P ++I+ ++ +K R+ N+ L+ MGF +
Sbjct: 290 YIFTASLPPSVVATATTSIRKLMTAH------EKRERLWSNARALHGGLKAMGFRLGTET 343
Query: 396 NDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHTKEDLIK 455
DS ++ +ML + + + L + V PATP R I A HT +
Sbjct: 344 CDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQT 403
Query: 456 ALEVISRVGDLVGI 469
L + G VG+
Sbjct: 404 VLGMFQAAGRAVGV 417
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 356 bits (917), Expect = e-120
Identities = 112/406 (27%), Positives = 193/406 (47%), Gaps = 40/406 (9%)
Query: 69 RPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIE-- 126
R I+SA A V + + +N + NYLG A P +I
Sbjct: 29 RIITSAQQADITVADG---------------SHVINFCANNYLGLANH-----PDLIAAA 68
Query: 127 --SLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRK 184
+ + S R GT H ELE+ +A F+G AI++ + N + L+
Sbjct: 69 KAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGA 128
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMV 244
IISD+LNH SI++G R A + +N LE L+E G + +++
Sbjct: 129 EDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGA-------RHVLI 181
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI 304
+G++SM+G + + + KY A + +D++H++G VG+ GRG E +V VDI
Sbjct: 182 ATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV-MGRVDI 240
Query: 305 MMGTFTKSF-GSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDG 363
+ GT K+ G+ GGY A KE++++L+ +L++ S++P I ++++
Sbjct: 241 ITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGS- 299
Query: 364 SSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNV 423
+ R+ N+ FR ++ GF L D ++P+ML + F+RE ++ +
Sbjct: 300 -----ELRDRLWANARQFREQMSAAGFT-LAGADHAIIPVMLGDAVVAQKFARELQKEGI 353
Query: 424 AVVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
V +P P AR R +SA+HT E + +A+E +R+G +G+
Sbjct: 354 YVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGV 399
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 355 bits (913), Expect = e-119
Identities = 114/406 (28%), Positives = 205/406 (50%), Gaps = 40/406 (9%)
Query: 69 RPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIE-- 126
R I+S +A V E+ LN + NYLG A P +I+
Sbjct: 28 RIITSPQNAEIKVGEK----------------EVLNFCANNYLGLADH-----PALIKTA 66
Query: 127 --SLKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRK 184
+++Y S R GT +H ELE+ ++ F+G I++ + N + L+
Sbjct: 67 QTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGP 126
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMV 244
IISD LNH SI++G R A +++N LE L+E +G + ++
Sbjct: 127 EDAIISDELNHASIIDGIRLCKAQRYRYKNNAMGDLEAKLKEADEKGA-------RFKLI 179
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI 304
+G++SM+G + I + KY A + +D++H++G +G+ GRG E V VDI
Sbjct: 180 ATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGV-ADRVDI 238
Query: 305 MMGTFTKSF-GSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDG 363
+ GT K+ G+ GGY +G KE+I++L+ +L++ +++P + ++++ E
Sbjct: 239 LTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGP 298
Query: 364 SSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNV 423
R +++ENS +FR+ ++K+GF+ L + P++P+ML + + L++ +
Sbjct: 299 QLR-----KQLQENSRYFRAGMEKLGFQ-LVPGNHPIIPVMLGDAQLATNMADHLLQEGI 352
Query: 424 AVVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVGDLVGI 469
VV ++P P+ AR R+ +SA HT++ L +A+E +VG +G
Sbjct: 353 YVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKLGA 398
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 346 bits (889), Expect = e-116
Identities = 75/400 (18%), Positives = 155/400 (38%), Gaps = 30/400 (7%)
Query: 76 DAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIE----SLKKY 131
D + + + + + + L S +YL A P + SL +
Sbjct: 35 DHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANH-----PLIKARLAKSLLEE 89
Query: 132 SPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISD 191
S S +E+ +A+F G ++ G+ N +L + + + + D
Sbjct: 90 QQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYID 149
Query: 192 SLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYS 251
H S+ GAR + A F HN HL +++ H P +++V+ IYS
Sbjct: 150 FFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQR---------HGP---GIIVVDSIYS 197
Query: 252 MEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTK 311
G + E++ I K++ + +DE+HS+G G G G+ L + T +V M + K
Sbjct: 198 TLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAK 256
Query: 312 SFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKL 371
+F G I + E+ + + + ++++++ P A + + +++I D +
Sbjct: 257 TFAYRAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESAD------NRR 310
Query: 372 ARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFP 431
+ + R L ++G + ++S ++ + + V P
Sbjct: 311 QHLDRMARKLRIGLSQLGLTI--RSESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRP 368
Query: 432 ATPLLLARARICISASHTKEDLIKALEVISRVGDLVGIKY 471
AT R+ +++ E + K +EV S + +
Sbjct: 369 ATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYF 408
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 338 bits (870), Expect = e-113
Identities = 101/400 (25%), Positives = 191/400 (47%), Gaps = 43/400 (10%)
Query: 69 RPISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIES- 127
P++ W +R + LN S +YLG + P++I +
Sbjct: 24 YPVAQGAGRWLVADDR----------------QYLNFSSNDYLGLSHH-----PQIIRAW 62
Query: 128 ---LKKYSPSTCSSRVDGGTLMVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRK 184
+++ + S G +VH LEE +A ++G A++F G+ N A++ +M K
Sbjct: 63 QQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAK 122
Query: 185 GSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMV 244
I +D L+H S++ A S + +R F HN +HL +L + MV
Sbjct: 123 EDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCP----------GQQMV 172
Query: 245 IVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI 304
+ EG++SM+G+ EI + +++ ++ +D+AH G +G+ GRG C L +V ++
Sbjct: 173 VTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPEL 229
Query: 305 MMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGS 364
++ TF K FG G + S + YL +Y+TS+ P A+ + +++ VI ++G
Sbjct: 230 LVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGD 289
Query: 365 SRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVA 424
+R ++ FR+ +Q + F L D+ S + P+++ + ++ + + +Q
Sbjct: 290 AR----REKLAALITRFRAGVQDLPFT-LADSCSAIQPLIVGDNSRALQLAEKLRQQGCW 344
Query: 425 VVTVAFPATPLLLARARICISASHTKEDLIKALEVISRVG 464
V + P P AR R+ ++A+H +D+ + LEV+ G
Sbjct: 345 VTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG 384
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 308 bits (790), Expect = e-101
Identities = 98/373 (26%), Positives = 164/373 (43%), Gaps = 27/373 (7%)
Query: 103 LNLGSYNYLGFAASDEYCTPRVI----ESLKKYSPSTCSSRVDGGTLMVHNELEECVARF 158
+YLG P V+ E+L+ + +R GT H LE +A
Sbjct: 49 TVWCGNDYLGMGQH-----PVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGL 103
Query: 159 VGKPAAIVFGMGYVTNSAILPVLMR--KGSLIISDSLNHNSIVNGARGSGATIRVFQHNT 216
K AA+VF Y N A L L G +I SDSLNH S++ G + + R+F+HN
Sbjct: 104 HQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHND 163
Query: 217 PSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLD 276
+HL E++ P ++ E +YSM+G+ EI I +++ A Y+D
Sbjct: 164 VAHLRELIAAD------DPAAP---KLIAFESVYSMDGDFGPIKEICDIAEEFGALTYID 214
Query: 277 EAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCPA 336
E H++G G G GV E + +DI GT K++G GGYIA S ++ ++ P
Sbjct: 215 EVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPG 273
Query: 337 HLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDN 396
+++TS+ P A ++I + +G + ++ + L+ +G ++ D+
Sbjct: 274 FIFSTSLPPAIAAGAQASIAFLKTAEGQKL----RDAQQMHAKVLKMRLKALGMPII-DH 328
Query: 397 DSPVMPIMLYNPAKIPAFSRECL-RQNVAVVTVAFPATPLLLARARICISASHTKEDLIK 455
S ++P+++ +P A S L V V + FP P R R S H + +
Sbjct: 329 GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDG 388
Query: 456 ALEVISRVGDLVG 468
+ + +
Sbjct: 389 LVHAMDLLWARCA 401
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 74.4 bits (183), Expect = 1e-14
Identities = 55/374 (14%), Positives = 123/374 (32%), Gaps = 59/374 (15%)
Query: 121 TPRVIESLKKY--SPSTCSSRVDGGTLMVHN-----ELEECVARFVGKPAAIVFGMGYVT 173
T ++L ++ S C G + + + +F+G G
Sbjct: 22 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCDV-ARVTNG--A 78
Query: 174 NSAILPVLM---RKGSLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEV 223
A V+ +K + ++ D H S A +G I + TP + +
Sbjct: 79 REAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQT 138
Query: 224 LREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
+ E + + ++ ++ G L +I +C +Y + ++ A++IG
Sbjct: 139 IEETK--------KRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR 190
Query: 284 VGKTGRGVCELLEVD--TADVDIMMGTFTKSFGSCG--GYIAGSKELIQYLKYTCPAHLY 339
+ V D ++G+ KS + G G + +E + + + Y
Sbjct: 191 -----------MPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRR--SEKY 237
Query: 340 ATSIS-PPAAEQIISAIKVILGE--DGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDN 396
+ I + L ++ E + F +E++K+G + LGDN
Sbjct: 238 KNKEVELLGCTARGATI-ITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDN 296
Query: 397 DSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFP-----ATPLLLARARICISASHTKE 451
+M ++ + S++ + P L ++ + + E
Sbjct: 297 PHNH-DLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKL-STYGLSDE 354
Query: 452 D---LIKALEVISR 462
+ ++ A + I
Sbjct: 355 EVDYVLNAFKEIIE 368
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 53/325 (16%), Positives = 96/325 (29%), Gaps = 99/325 (30%)
Query: 202 ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRT-------HRPWKKIMVIVEGIYSMEG 254
+ G + + + ++VL + E + H + + + +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEGNDIH------ALAAKLLQENDT 114
Query: 255 ELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLE-VDTADVDIMMGTFTKSF 313
L K E+I K YI A + + L V + ++ F
Sbjct: 115 TLVKTKELI------KNYI---TARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IF---- 160
Query: 314 GSCGG------YIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRG 367
GG Y +EL LY T +I L
Sbjct: 161 ---GGQGNTDDYF---EEL---------RDLYQTY--HVLVGDLIKFSAETL-------- 195
Query: 368 AQKLARIRENSNFFRSELQKMGFEVLG---------DND----SPV-MP-IML------Y 406
+L R ++ ++ G +L D D P+ P I +
Sbjct: 196 -SELIRTTLDAEKVFTQ----GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 407 NPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISASHTKEDL----IKALEVISR 462
AK+ F+ LR + T + L+ A A I+ + + E KA+ V+
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGH--SQGLVTAVA---IAETDSWESFFVSVRKAITVLFF 305
Query: 463 VGDLVGIKYFP---AEPRKQMEEEE 484
+G + + +P P + E
Sbjct: 306 IG-VRCYEAYPNTSLPPSILEDSLE 329
Score = 44.7 bits (105), Expect = 8e-05
Identities = 92/573 (16%), Positives = 163/573 (28%), Gaps = 216/573 (37%)
Query: 2 ISIPYLTALTTYFSYGLLFVFGQIRDFFRKIIDWWSANNLQGYAPIC--------LG--- 50
+ +P F+ Q+++ F KI+ + P LG
Sbjct: 20 LLVPT----------ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 51 ------------------LEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVERFSNDSNKT 92
L +F YL G I + + + +++ T
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEF--ENCYLE-----GNDIHA-------LAAKLLQENDTT 115
Query: 93 LKRTNKVNRCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMVHNELE 152
L +T ++ + NY A R K S S V G
Sbjct: 116 LVKTKELIK-------NY--ITAR--IMAKR---PFDKKSNSALFRAVGEGN-------- 153
Query: 153 ECVARFVGKPAAIVFGMG--------------YVTNSAILPVLMRKGSLIISDSLNHNSI 198
A+ V AI FG G Y T ++ L++ + +S+ +
Sbjct: 154 ---AQLV----AI-FG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 199 VNGARGSGATIRVFQHN---TPSHLEEVLRE-----------QIAE--------G-QPRT 235
G I + N TP ++ L Q+A G P
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPD--KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 236 HRPWKK-IMVIVEGIYSMEGELCKFPEIIAICKKYKAYI-----YLDEAHSIGAVGKTGR 289
R + K +G+ + IA ++++ + IG
Sbjct: 263 LRSYLKGATGHSQGLVTA--------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 290 GVCEL---LEVDTADVDI-----MMGTFTKSFGSCGGYIAGSKELIQYLKYTCPAHLYAT 341
L + D+ + + M+ S +++ Y+ T +HL
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPML--------SISNL--TQEQVQDYVNKTN-SHL--- 360
Query: 342 SISPPAAEQI-ISAIK-----VILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGD 395
PA +Q+ IS + V+ G Q L L+K +
Sbjct: 361 ----PAGKQVEISLVNGAKNLVVSGP------PQSLYG-------LNLTLRKA--KAPSG 401
Query: 396 NDSPVMPIMLYNPAKIPAFSRECLRQNVA--VVTVAF------PATPLL---LARARICI 444
D ++IP FS L+ + V F PA+ L+ L + +
Sbjct: 402 LDQ----------SRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 445 SAS-------HTK--EDL-IKALEVISRVGDLV 467
+A T DL + + + R+ D +
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Score = 43.5 bits (102), Expect = 2e-04
Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 76/255 (29%)
Query: 264 AICKKYKAYIYLDEAHSIGAVGKTGRGVCELL--EVDTADVDIMMGTFTKSFGSCGGYIA 321
I + Y A I+ G+ E + E++ TF
Sbjct: 1683 RIRENYSAMIF--------ETIVDGKLKTEKIFKEINEHSTSY---TFR----------- 1720
Query: 322 GSKELIQYLKYTCPAHLYATSISPPA---AEQIISAIKVI----LGE------------- 361
K L+ ++T PA L + ++ +I A LGE
Sbjct: 1721 SEKGLLSATQFTQPA-LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI 1779
Query: 362 -DGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIML-YNPAKI-PAFSREC 418
++ F+R M V D M+ NP ++ +FS+E
Sbjct: 1780 ES-----LVEVV-------FYRGMT--MQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 419 LRQNVAVVTVAFPATPLLL------ARARICISASHTKEDLIKALEVISRVGDLVGIKYF 472
L+ VV T L+ + ++A ++AL+ ++ V + + ++
Sbjct: 1826 LQ---YVVERVGKRTGWLVEIVNYNVENQQYVAAGD-----LRALDTVTNVLNFIKLQKI 1877
Query: 473 PAEPRKQMEEEERMK 487
++ E ++
Sbjct: 1878 DIIELQKSLSLEEVE 1892
Score = 39.6 bits (92), Expect = 0.003
Identities = 72/425 (16%), Positives = 115/425 (27%), Gaps = 181/425 (42%)
Query: 3 SIPYLTALTTYFSYGLLFVFGQIRDFFRKIIDWWSANNLQGYAPIC--LGLEDFYIRRLY 60
YL L+ S L+ V Q+ A+ Y LG +R
Sbjct: 227 DKDYL--LSIPISCPLIGVI-QL------------AH----YVVTAKLLGFTPGELRS-- 265
Query: 61 LRIQDCFGR--------PISSAPDAWFDVVERFSNDSNKTLKRTNKVNRCLNLGSYNYLG 112
++ G I+ D+W E F K + ++G
Sbjct: 266 -YLKGATGHSQGLVTAVAIAET-DSW----ESFFVSVRKAIT------------VLFFIG 307
Query: 113 FAASDEYCTPRVIESLKKYSPSTCSSRVDGG----TLM--VHNELEECVARFVGKPAAIV 166
+ Y P SL PS ++ + M + N +E V +V K
Sbjct: 308 VRCYEAY--PNT--SL---PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK----- 355
Query: 167 FGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARG---SGATIRVFQHNTPSHLEEV 223
TN + LP + IS +VNGA+ SG P L +
Sbjct: 356 ------TN-SHLP---AGKQVEIS-------LVNGAKNLVVSG---------PPQSLYGL 389
Query: 224 ---LREQIAE---GQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDE 277
LR+ A Q R +K+ F + + +
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNR-----------FLPVAS------PF----- 427
Query: 278 AHSIGAVGKTGRGVCELLE--VDTADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKYTCP 335
HS LL D + D++ + ++ P
Sbjct: 428 -HS------------HLLVPASDLINKDLVKNNVS---------FNAK-----DIQ--IP 458
Query: 336 AHLYAT-----------SISPPAAEQII------------SAIKVI-LGEDGSSRGAQKL 371
+Y T SIS + II A ++ G G+S
Sbjct: 459 --VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
Query: 372 ARIRE 376
R ++
Sbjct: 517 HRNKD 521
Score = 39.3 bits (91), Expect = 0.004
Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 59/186 (31%)
Query: 337 HLYATSISPPAAEQI-------------ISAIKVILGEDGSSR---GAQKLARIRENSNF 380
LY TS AA+ + S + +++ + G +K RIREN
Sbjct: 1634 DLYKTS---KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--- 1687
Query: 381 FRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFS----RECLR--QN--VAVVTVAFPA 432
M FE + D I +++ + L Q A+ + A
Sbjct: 1688 ----YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 433 TPLLLARARI---CISASH-----TKEDLIKAL----EVISRVGDLV------GIKYFPA 474
L ++ I A H AL +V+S + LV G+ A
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYA------ALASLADVMS-IESLVEVVFYRGMTMQVA 1796
Query: 475 EPRKQM 480
PR ++
Sbjct: 1797 VPRDEL 1802
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 57.4 bits (138), Expect = 5e-09
Identities = 25/261 (9%), Positives = 64/261 (24%), Gaps = 23/261 (8%)
Query: 100 NRCLNLGSYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDG----GTLMVHNELEECV 155
+ + YN + D Y S + + G LE V
Sbjct: 25 LKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLERTV 84
Query: 156 ARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLN---HNSIV-NGARGSGATI-R 210
G + G + + + ++ G + + NGA
Sbjct: 85 QELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDE 144
Query: 211 VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEG----ELCKFPEIIAIC 266
+ + + + + + ++ G + + +
Sbjct: 145 AHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELT 204
Query: 267 KKYKAYIYLDEAHSIGA--------VGKTGRGVCELLEVDTADVDIMMGTFTKSFGS-CG 317
+ + ++ D + G + + E++ + D + K G
Sbjct: 205 EAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIG 264
Query: 318 GYIAG-SKELIQYLKYTCPAH 337
G++ E+ K +
Sbjct: 265 GFLCMNDDEMFSSAKELVVVY 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 67/421 (15%), Positives = 134/421 (31%), Gaps = 103/421 (24%)
Query: 43 GYAPICLGLEDFYIRRLYLR-IQDCFGRPISSAPDAWFDVVERFSNDSNKTL-------- 93
Y I ED ++ + +QD + I S + D + + + TL
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLS 73
Query: 94 KRTNKVNRCLNLG---SYNYLGFAASDEYCTPRVIESLKKYSPSTCSSRVDGGTLMV--- 147
K+ V + + +Y +L E P ++ + Y R+ +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT--RMYI--EQRDRLYNDNQVFAKY 129
Query: 148 -------HNELEECVARFVGKPAA--IVFGMGYVTNSAILPVLMRKG---SLIISDSLNH 195
+ +L + + +PA ++ G+ G + + D
Sbjct: 130 NVSRLQPYLKLRQALLEL--RPAKNVLIDGVL--------------GSGKTWVALDVCLS 173
Query: 196 NSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGE 255
+ + + N+P + E+L++ + + P I I+S++ E
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 256 LCKFPEIIAICKKYK-AYIYLD--------EAHSIGAVGKTGRGVCELLEVDTAD---VD 303
L + + K Y+ + L A ++ C++L + T D
Sbjct: 234 LRRLLKS----KPYENCLLVLLNVQNAKAWNAFNLS---------CKIL-LTTRFKQVTD 279
Query: 304 IMMGTFTKSF----GSCGGYIAGSKELI-QYLKYTC---PAHLYATSISPPAAEQIISAI 355
+ T S K L+ +YL P + +P + +S I
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNP----RRLSII 333
Query: 356 KVILGEDGSSR-------GAQKLARIRENS--NFFRSELQKMGFEVLG--DNDSPVMPIM 404
+ DG + KL I E+S +E +KM F+ L + + I+
Sbjct: 334 AESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTIL 391
Query: 405 L 405
L
Sbjct: 392 L 392
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 50.7 bits (122), Expect = 5e-07
Identities = 36/199 (18%), Positives = 69/199 (34%), Gaps = 27/199 (13%)
Query: 149 NELEECVARFVGKPAAIVFGM--GYVTNSAILPVLMRKGSLIISDSLNHNSI--VNGARG 204
+ + + +P A V + G TN + +R +I+ L H S
Sbjct: 52 AKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEA 111
Query: 205 SGATIRVFQHN----TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE------GIYSMEG 254
+G + + +E L E +E +V + Y+ +
Sbjct: 112 TGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPK------LVYISNTTEVGTQYTKQ- 164
Query: 255 ELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFG 314
EL +I A CK++ Y++LD A A+ + L ++ D+ TK+ G
Sbjct: 165 EL---EDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIA-RLTDMFYIGATKAGG 219
Query: 315 SCGGYI-AGSKELIQYLKY 332
G + + L ++
Sbjct: 220 MFGEALIILNDALKPNARH 238
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 49.9 bits (120), Expect = 1e-06
Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 45/192 (23%)
Query: 259 FPEIIAICKK----------YKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA-DVDIMMG 307
+++ KK Y Y+ D SI E+ A +V +
Sbjct: 220 LTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSI-------------FEIPGAEEVAMETA 266
Query: 308 TFTKSFGSCG---GYIAGSKELIQYLKYTCPA---HLYATSIS-PPAAEQIISAIKVILG 360
+F+ G G G+ K+L+ + + T + Q L
Sbjct: 267 SFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQA--GALACLT 324
Query: 361 EDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIP-----AFS 415
+G + + +EN+N +G++V G ++P Y P
Sbjct: 325 PEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYGGKNAP------YVWVHFPNQSSWDVF 378
Query: 416 RECLRQ-NVAVV 426
E L + +V
Sbjct: 379 AEILEKTHVVTT 390
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 47.7 bits (113), Expect = 5e-06
Identities = 32/217 (14%), Positives = 55/217 (25%), Gaps = 48/217 (22%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNH-----NSIVNGAR 203
L E V G I G +PVL++K + N + +
Sbjct: 77 YALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ 136
Query: 204 G----SGATIRVFQHNTPSHLE-----------EVLREQIAE-GQPRTHRPWKKIMVIVE 247
G +G T+R E L I E G ++
Sbjct: 137 GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVP------YIVAT 190
Query: 248 -------G-IYSMEGELCKFPEIIAICKKYKAYIYLDEA--------HSIGAVGKTGRGV 291
G S+ + +I KKY + +D A +
Sbjct: 191 ITSNSAGGQPVSLA----NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTI 246
Query: 292 CELLEVDTADVDIMMGTFTKSFGS-CGGYIAGSKELI 327
++ D++ + K GG + +
Sbjct: 247 EQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSF 283
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 45.3 bits (108), Expect = 2e-05
Identities = 38/204 (18%), Positives = 66/204 (32%), Gaps = 35/204 (17%)
Query: 149 NELEECVARFVGKPAAI--VFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVN---GA- 202
+++ + + V G N+ L + I +H I N GA
Sbjct: 46 AQVKRKFCEIFERDVEVFLVPT-GTAANALCLSAMTPPWGNIYCHPASH--INNDECGAP 102
Query: 203 --RGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTHRPWKKIMVIV----EG--IY 250
+GA + L E RE+ T +P V + E IY
Sbjct: 103 EFFSNGAKLMTVDGPAAKLDIVRLRERTREK-VGDVHTT-QP---ACVSITQATEVGSIY 157
Query: 251 SMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTAD-VDIMMGTF 309
+++ E+ I +CK +++D + A+ G C E+ VD +
Sbjct: 158 TLD-EIE---AIGDVCKSSSLGLHMDGSRFANALVSLG---CSPAEMTWKAGVDALSFGA 210
Query: 310 TKSFGSCGGYI-AGSKELIQYLKY 332
TK+ I + L + Y
Sbjct: 211 TKNGVLAAEAIVLFNTSLATEMSY 234
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 45.2 bits (106), Expect = 3e-05
Identities = 24/217 (11%), Positives = 57/217 (26%), Gaps = 28/217 (12%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLII---SDSLNHNSIVNGARGS 205
+L++ I G + + PVL++ + N +
Sbjct: 79 YDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAH 138
Query: 206 ----GATI------RVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEG- 254
G + F T + + + H + ++ + G
Sbjct: 139 VELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGG 198
Query: 255 ---ELCKFPEIIAICKKYKAYIYLDEAHSIGA--------VGKTGRGVCELLEVDTADVD 303
+ E+ I K++ ++ +D A + E++ D
Sbjct: 199 QPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYAD 258
Query: 304 IMMGTFTKSFGSCGG---YIAGSKELIQYLKYTCPAH 337
+ + K G I ++E+ + C
Sbjct: 259 ALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPM 295
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 45.0 bits (107), Expect = 4e-05
Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 50/195 (25%)
Query: 259 FPEIIAICKKYKAYIYLDEA-----------HSIGAVGKTGRGVCELLEVDTA-DVDIMM 306
E++ +K + + D A +I E+ A +V I
Sbjct: 231 LTELVNFARKNGSILVYDAAYALYISNPDCPKTI-------------YEIPGADEVAIET 277
Query: 307 GTFTKSFGSCG---GYIAGSKELIQYLKYTCPAHLYA------TSISPPAAEQIISAIKV 357
+F+K G G G+ K L A S Q +
Sbjct: 278 CSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIV--QA-GGLAC 334
Query: 358 ILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIP----- 412
L +G + +EN+ ++ +MGF V G +D+P Y P
Sbjct: 335 -LQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYGGDDAP------YIWVGFPGKPSW 387
Query: 413 AFSRECLRQ-NVAVV 426
E L + N+
Sbjct: 388 DVFAEILERCNIVTT 402
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 44.6 bits (106), Expect = 4e-05
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 25/193 (12%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGARG---- 204
NELE A GK AA+ G + N + ++G +I ++ +H I G
Sbjct: 41 NELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSH--IFWYEVGAMAV 98
Query: 205 -SGATIRVFQHN----TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKF 259
SG P + + +R H P ++ I G +
Sbjct: 99 LSGVMPHPVPGKNGAMDPDDVRKAIRP------RNIHFPRTSLIAIENTHNRSGGRVVPL 152
Query: 260 PEI---IAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGS- 315
I I K++ +++D A A +G V E D +M +K +
Sbjct: 153 ENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY----AGYADSVMFCLSKGLCAP 208
Query: 316 CGGYIAGSKELIQ 328
G + G ++ I+
Sbjct: 209 VGSVVVGDRDFIE 221
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 44.4 bits (105), Expect = 6e-05
Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 35/189 (18%)
Query: 147 VHNELEECVARFVG-KPAAIVFGMGYVTN------SAILPVLMR--KGSLIISDSLNHNS 197
+ L +A +G + +V N +A+ R + +I++++ N +
Sbjct: 72 LSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPT 131
Query: 198 ---IVNG-ARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSME 253
I G A + ++P L + + + A +V++ +
Sbjct: 132 DLYIAEGLADMLQQGYTLRLVDSPEELPQAIDQDTA-------------VVMLTHVNYKT 178
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSF 313
G + + A+ + A D AHS GAV +++ A D +G K
Sbjct: 179 GYMHDMQALTALSHECGALAIWDLAHSAGAVP---------VDLHQAGADYAIGCTYKYL 229
Query: 314 GSCGGYIAG 322
G A
Sbjct: 230 NGGPGSQAF 238
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 42.6 bits (101), Expect = 2e-04
Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 31/185 (16%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA-DVDIMMGTFTKSFGSCG 317
I+ +++ I D A+S + E+ A I + +F+K G G
Sbjct: 185 LRAIVHYAIEHEILILFDAAYS--TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAG 242
Query: 318 ---GYIAGSKELIQYLKYTCPAHL-----YATSISPPAAEQIISAIKVILGEDGSSRGAQ 369
G+ +EL + + Q + + + +
Sbjct: 243 IRLGWTVIPQELTYADGHFVIQDWERFLSTTFN-GASIPAQE-AGVAGLSILPQ----LE 296
Query: 370 KLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIP-------AFSRECLRQ- 421
+ RENS+ R L GFEV G +P Y K LR+
Sbjct: 297 AIHYYRENSDLLRKALLATGFEVFGGEHAP------YLWVKPTQANISDRDLFDFFLREY 350
Query: 422 NVAVV 426
++A+
Sbjct: 351 HIAIT 355
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 41.9 bits (98), Expect = 3e-04
Identities = 32/226 (14%), Positives = 66/226 (29%), Gaps = 41/226 (18%)
Query: 261 EIIAICKKYKAYIYLDEA----HSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSC 316
++ +A + D A H + D DIM+ TF+K G
Sbjct: 176 TVVNRPDDDEAKVIHDFAYYWPHYTPITRR-------------QDHDIMLFTFSKITGHA 222
Query: 317 G---GY-IAGSKELIQYLKYTCPAHLYATS-ISPPAAEQIISAIKVILGEDGSSRG--AQ 369
G G+ + KE+ + + + S S +I++ +K + S
Sbjct: 223 GSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKY 282
Query: 370 KLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFS-----------REC 418
++ R +++ L + PAF+ E
Sbjct: 283 GREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSEL 342
Query: 419 LRQNVAVVT-VAFPATPLLLARARICISASHTKEDLIKALEVISRV 463
R V + + R+ + ++ LE ++ +
Sbjct: 343 RRHKVMSRAGERCGSDKKHV---RVSM--LSREDVFNVFLERLANM 383
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 41.4 bits (98), Expect = 5e-04
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA-DVDIMMGTFTKSFGSCG 317
F E + + +K+ ++ D + G L + A + + + + +KS+ G
Sbjct: 180 FEEALGLARKHGLWLIHDNPYV--DQVYEGEAPS-PLALPGAKERVVELFSLSKSYNLAG 236
Query: 318 ---GYIAGSKELIQYLK 331
G+ GS+E + L+
Sbjct: 237 FRLGFALGSEEALARLE 253
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 41.6 bits (97), Expect = 6e-04
Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 43/275 (15%)
Query: 163 AAIVFG---MGYVTN---SAILPVLM---RKGSLIISDSLNHNSIVNGARGSGATIR--- 210
A VF VTN +A V M GS I+ D H S+ + S T
Sbjct: 204 IARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFR 263
Query: 211 -------VFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEII 263
+ S + + + P P VI Y +G L I
Sbjct: 264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPV--HAVITNSTY--DGLLYNTDFIK 319
Query: 264 AICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDI---------MMGTFTKSFG 314
I+ D A + + + ++ F+++
Sbjct: 320 KTLDVK--SIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASM 377
Query: 315 SCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARI 374
+ + T+ SP I+++ + + G + +
Sbjct: 378 IHVKGDVNEETFNEAYMMH-------TTTSPHYG--IVASTETAAAMMKGNAGKRLINGS 428
Query: 375 RENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPA 409
E + FR E++++ E G P +
Sbjct: 429 IERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTE 463
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 41.0 bits (97), Expect = 6e-04
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA-DVDIMMGTFTKSFGSCG 317
F E IA K I D A+ A G + +L + DV I + + +K + G
Sbjct: 203 FDEAIAKFKGTDTKIVHDFAYG--AFGFDAKNPS-ILASENGKDVAIEIYSLSKGYNMSG 259
Query: 318 ---GYIAGSKELIQYLK 331
G+ G+K++IQ LK
Sbjct: 260 FRVGFAVGNKDMIQALK 276
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 39.8 bits (93), Expect = 0.001
Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 36/169 (21%)
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFG----SC 316
E+I K + + V E E DI+ G+ K+ G
Sbjct: 184 EMIVFVKNINPEVIV-------FVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKT 236
Query: 317 GGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILG-------EDGSSRGAQ 369
GGYIAG + L+ Y L I A + S +++ G + +GA+
Sbjct: 237 GGYIAGKEALVDLCGY----RLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGAR 292
Query: 370 KLARIRENSNFFRSELQKMGFEVLGDNDSP----VMPIMLYNPAKIPAF 414
A + L + G E D+P + + +N K+ AF
Sbjct: 293 FTAAM----------LAEFGVEADPVWDAPRTDLIQSVSFHNKEKMVAF 331
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTA-DVDIMMGTFTKSFGSCG 317
F ++A+ K+Y + D A++ + G +++V A D+ + T +KS+ G
Sbjct: 194 FERVVALAKQYDVMVVHDLAYA--DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251
Query: 318 ---GYIAGSKELIQYLK 331
G++ G+ EL+ L
Sbjct: 252 WRIGFMVGNPELVSALA 268
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 39.3 bits (91), Expect = 0.002
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 163 AAIVFG---MGYVTN---SAILPVLM---RKGSLIISDSLNHNSIVNGARGSGA------ 207
AA VFG V + ++ +++ D H SI G +GA
Sbjct: 214 AARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMV 273
Query: 208 -TIRVFQHNTPSHLEEV----LREQIAEGQPRTHRPWKKI--MVIVEGIYSMEGELCKFP 260
+ + P + +E+ L+++I+E + +K V+ Y +G
Sbjct: 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYNAK 331
Query: 261 EIIAICKKYKAYIYLDEAH 279
E + +K ++ DEA
Sbjct: 332 EAQDLLEKTSDRLHFDEAW 350
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 38.4 bits (90), Expect = 0.005
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 222 EVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSI 281
++L+ I E + + K +++ +Y G K EI+ ICK+ + D A ++
Sbjct: 110 DLLKLAIKECEKKP-----KALILTH-LY---GNAAKMDEIVEICKENDIVLIEDAAEAL 160
Query: 282 GA 283
G+
Sbjct: 161 GS 162
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 37.1 bits (86), Expect = 0.013
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 20/121 (16%)
Query: 171 YVTN---SAILPVLM---RKGSLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHL---- 220
++ N S IL V+ +K I+ H S+++ S F S L
Sbjct: 76 FLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEG-HFIETHQSPLTNHY 134
Query: 221 EEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHS 280
+V ++ K++V+ Y GE E+I + + +DEAH
Sbjct: 135 NKVNLSRLNN-------DGHKLVVLTYPNY--YGETFNVEEVIKSLHQLNIPVLIDEAHG 185
Query: 281 I 281
Sbjct: 186 A 186
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 36.5 bits (85), Expect = 0.018
Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 33/151 (21%)
Query: 149 NELEECVARFVGKP---------AAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIV 199
+ E+ + ++G P +A + + +T+ + ++ G +I+ + + V
Sbjct: 65 DAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTV 124
Query: 200 NGARGSGATIRVF------QHN-TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSM 252
N +G VF +N S +E + +T K IM+
Sbjct: 125 NPTIQNGLIP-VFVDVDIPTYNVNASLIEAAVS-------DKT----KAIMIA-----HT 167
Query: 253 EGELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
G L E+ + KY ++ D ++G+
Sbjct: 168 LGNLFDLAEVRRVADKYNLWLIEDCCDALGS 198
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 36.2 bits (84), Expect = 0.019
Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 42/199 (21%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTN-SAILPVLMRK-GSLIISDSLNHNSIVN-----G 201
+ E +A+ +GK +A+ F G + A+ RK + L+H +
Sbjct: 51 EDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSH--LEIHEQDGL 108
Query: 202 ARGSGATIRVFQHN----TPSHLEEVLREQIAEGQPRTHRPWKKIMV-----IVEG-IYS 251
T + T ++ + P +++ + G + +
Sbjct: 109 KELQQITPLLLGTANQLLTIDDIKSL------------REPVSSVLIELPQREIGGQLPA 156
Query: 252 MEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLE-VDTADVDIMMGTFT 310
E + +I C + ++LD A + E+ D+ V F
Sbjct: 157 FE----ELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVS-----FY 207
Query: 311 KSFGS-CGGYIAGSKELIQ 328
K G G +AG+ + +Q
Sbjct: 208 KGIGGIAGAILAGNDDFVQ 226
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 36.2 bits (84), Expect = 0.020
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 39/234 (16%)
Query: 261 EIIAICKKYKAYIYLDEA-HSI---GAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSC 316
I + K+ + D A + G + + + D I+ + +K+F
Sbjct: 206 IIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA 265
Query: 317 G---GYIAGSKELI--------------QYLKYTCPAHLYATSISPPAAEQI--ISAIKV 357
G G + S +L ++ + + LYA S + Q + +K
Sbjct: 266 GQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA 325
Query: 358 ILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSP-------VMPIMLYNPAK 410
DG + + + GF ++ D D + Y
Sbjct: 326 C--NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTV-GYKGMD 382
Query: 411 IPAFSRECLR-QNVAVVT-VAFPATPLLLARARICISASHTKEDLIKALEVISR 462
+ +R A+ RIC ++ + + +
Sbjct: 383 SSKLIEKFVRYGMCAITLKTTGSKRN---EAMRIC-TSLLPESQFPDLEKRLQM 432
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 35.7 bits (83), Expect = 0.032
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 47/168 (27%)
Query: 260 PEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGG- 318
I CKK + D + A ++ D+M+ K G
Sbjct: 164 MMIGEFCKKNNMFFVCDCVSAFLADP---------FNMNECGADVMITGSQKVLACPPGI 214
Query: 319 -YIAGSKE----------------LIQYLK--------YTCPAHLYATSISPPAAEQIIS 353
I + L LK +T + +
Sbjct: 215 SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILL------QINE--- 265
Query: 354 AIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVM 401
+K I G+ ++ARI + FR++++ + FE++ ++ + +
Sbjct: 266 RLKEIKKHGGA---DAEVARIASQAADFRAKIKDLPFELVSESPANGV 310
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 35.2 bits (82), Expect = 0.035
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYL---KYTCPAHLYATSISPPAAEQIISAIKV 357
++ TF+K+F GY+ S++ I + P ++ S A+ + ++
Sbjct: 195 AVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL--PFNVSYVSQM--FAKVALDHREI 250
Query: 358 ILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
++ I E +S L++MG+ +
Sbjct: 251 FE---------ERTKFIVEERERMKSALREMGYRIT 277
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 35.2 bits (82), Expect = 0.037
Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 50/170 (29%)
Query: 260 PEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCGG- 318
E+ A+ +Y +D S G + +++ +D ++ + K G
Sbjct: 151 DEVGALAHRYGKTYIVDAMSSFGGIP---------MDIAALHIDYLISSANKCIQGVPGF 201
Query: 319 -YIAGSKELIQYLK-------------------------YTCPAHLYATSISPPAAEQII 352
++ ++ + K +T P H A Q
Sbjct: 202 AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVL------AFAQ-- 253
Query: 353 SAIKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDND--SPV 400
A+K + E G A + R ++N + ++ +GF L D++ SP+
Sbjct: 254 -ALKELAKEGGV---AARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI 299
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 35.1 bits (81), Expect = 0.052
Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 62/236 (26%)
Query: 261 EIIAICKKYKAYIYLDEA---------HSIGAVGKTGRGVCELLEVDTADVDIMMGTFTK 311
+ I K+Y + +D A +S + I+ + +K
Sbjct: 230 HLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNT-------------ILCFSLSK 276
Query: 312 SFGSCG---GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGA 368
G G G I ++I+ + + ++P I A ++ +
Sbjct: 277 -IGLPGMRTGIIVADAKVIEAVSA---MNAVVN-LAPTRFGAAI-ATPLVANDRIK---Q 327
Query: 369 QKLARIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNP-------AKIP-------AF 414
I+ F++ + ++L P+M++ P
Sbjct: 328 LSDNEIKP---FYQKQATLA-VKLL-KQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDL 382
Query: 415 SRECLRQNVAVV--TVAFPATPLLLARA-----RICISASHTKEDLIKALEVISRV 463
+ +V FP + + R+ I+A ++ LI ++VI V
Sbjct: 383 YERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAAD--EQTLIDGIKVIGEV 436
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 34.7 bits (80), Expect = 0.058
Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 26/166 (15%)
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFG----SC 316
E+IA K+ K + + V E E D+M G+ K+ G
Sbjct: 190 EMIAFVKEIKPDVVV-------FVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKT 242
Query: 317 GGYIAGSKELIQYLKYTCPAHLYATSI--SPPAAEQIISAIKVILGEDGSSRGAQKLARI 374
GGYI G ++ ++ Y L + I A+ + + G +
Sbjct: 243 GGYIVGKEQYVEACAY----RLTSPGIGAEAGASLYSLQEMY-----QGFFLAPHVAGQA 293
Query: 375 RENSNFFRSELQKMGFEVLGDNDSP----VMPIMLYNPAKIPAFSR 416
+ + F + L+K+G ++P + + + ++ AF +
Sbjct: 294 LKGAIFTAAFLEKLGMNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQ 339
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 34.8 bits (80), Expect = 0.064
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 302 VDIMMGTFTKSFG----SCGGYIAGSKELIQYLKY 332
D++ G+ K+ G GGY+AG+K+ I+ Y
Sbjct: 235 ADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 34.5 bits (80), Expect = 0.080
Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 41/154 (26%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTN--SAILPVLM----------RKGSLIISDSLNHN 196
+ E A+ G A++ V++ +A L ++ +KG II +++ +
Sbjct: 37 KQYETQFAKTFGSKYAVM-----VSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWS 91
Query: 197 SIVNGARGSGATIRVF------QHN-TPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGI 249
+ + G + F N L+E + T K I+ +
Sbjct: 92 TTYYPLQQYGLRV-KFVDIDINTLNIDIESLKEAVT-------DST----KAILTV---- 135
Query: 250 YSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
++ G F EI I + D S+GA
Sbjct: 136 -NLLGNPNNFDEINKIIGGRDIILLEDNCESMGA 168
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 34.1 bits (79), Expect = 0.085
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 259 FPEIIAICKKYKAYIYLDEAHS-IGAVGKTGRGVCELLEVDTA-----DVDIMMGTFTKS 312
+ E+ + KY I DE +S I G G L+ +M + +K
Sbjct: 190 WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG---CLQAAAQLGRSRQKLLMFTSLSKR 246
Query: 313 FGSCG---GYIAGSKELIQYLK 331
G G++AG EL++
Sbjct: 247 SNVPGLRSGFVAGDAELLKNFL 268
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 34.2 bits (79), Expect = 0.10
Identities = 36/171 (21%), Positives = 66/171 (38%), Gaps = 25/171 (14%)
Query: 217 PSHLEEVLREQIAEG--QPRTHRPWKKIMVIVEG------IYSMEGELCKFPEIIAICKK 268
P L ++L E P+ + P K + + G + E + EI + +K
Sbjct: 168 PDSLRDILSRWKPEDAKNPQKNTP-KFLYTVPNGNNPTGNSLTSE----RKKEIYELARK 222
Query: 269 YKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG---GYIAGSKE 325
Y I D+ + + V L +D I +F+K S G G++ G K
Sbjct: 223 YDFLIIEDDPY--YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISS-GLRIGFLTGPKP 279
Query: 326 LIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARIRE 376
LI+ + H+ +++ P Q++ I +L E G + R+ +
Sbjct: 280 LIERVI----LHIQVSTLHPSTFNQLM--ISQLLHEWGEEGFMAHVDRVID 324
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 33.9 bits (78), Expect = 0.11
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 13/100 (13%)
Query: 261 EIIAICKKYKAY-IYLDEAHSI----GAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGS 315
E+ + + I D A+++ + + M + +K
Sbjct: 203 ELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKIT-H 261
Query: 316 CG---GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQII 352
G + A SKE I++ +H I P Q+
Sbjct: 262 AGSGVSFFASSKENIEWYA----SHANVRGIGPNKLNQLA 297
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 33.7 bits (78), Expect = 0.12
Identities = 36/172 (20%), Positives = 60/172 (34%), Gaps = 31/172 (18%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYLKYTCPAHLYAT-SISPPAAEQIISAIKVIL 359
+G+ K + G G+I G KE + L + + S P + A+K+
Sbjct: 215 FTVGSAGKRLEATGYRVGWIVGPKEFMPRLAG---MRQWTSFSAPTPLQAGVAEALKLAR 271
Query: 360 GEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMP-----IMLYNPAKIPAF 414
E + R R + L+ MG V +P +M A++P +
Sbjct: 272 REGFYEALREGYRRRR---DLLAGGLRAMGLRVY-------VPEGTYFLM----AELPGW 317
Query: 415 SRECLRQNVAVVTV---AFPATPLLLARARICISASHTKEDLIKALEVISRV 463
L + V + AF R + +E+L ALE + RV
Sbjct: 318 DAFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKT--EEELHLALERLGRV 367
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 33.8 bits (78), Expect = 0.13
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 21/102 (20%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELI-------QYLKYTCPAHL-YATSISPPAAEQII 352
I +G+ K+F G G+ G + L+ Q YTC + A A
Sbjct: 248 ITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEA------IAVGFE 301
Query: 353 SAIKVILGEDGSSRG-AQKLARIRENSNFFRSELQKMGFEVL 393
+ +K + + + +L R ++ S L ++G
Sbjct: 302 TELKRLKSPECYFNSISGELMAKR---DYMASFLAEVGMNPT 340
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 33.7 bits (78), Expect = 0.13
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYLK-----YTCPAHLYATSISPPAAEQIISAI 355
++ T +K+F G G+ ++E+I L Y +S P A+ A
Sbjct: 207 AILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY---------PLSTPVADIAAQA- 256
Query: 356 KVILGEDGSSRGAQKLARIRENSNFFRSELQKMGF 390
L G +++A+I + + L+++
Sbjct: 257 ---LSPQGIVAMRERVAQIIAEREYLIAALKEIPC 288
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 33.4 bits (77), Expect = 0.16
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELI-------QYLKYTCPAHL-YATSISPPAAEQII 352
+ +G+ K+F + G G++ G ++ Q + CP A AE
Sbjct: 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAA------VAESFE 293
Query: 353 SAIKVILGEDGSSRG-AQKLARIRENSNFFRSELQKMGFEVL 393
+ Q + R R + LQ +G + +
Sbjct: 294 REQLLFRQPSSYFVQFPQAMQRCR---DHMIRSLQSVGLKPI 332
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 33.4 bits (77), Expect = 0.16
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 21/102 (20%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELI-------QYLKYTCPAHL-YATSISPPAAEQII 352
I +G+ K+F G G+ G LI Q YTC L A AE
Sbjct: 233 ITIGSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAA------LAEAFW 286
Query: 353 SAIKVILGEDGSSRG-AQKLARIRENSNFFRSELQKMGFEVL 393
IK + + ++L R + L +G + +
Sbjct: 287 IDIKRMDDPECYFNSLPKELEVKR---DRMVRLLNSVGLKPI 325
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 33.3 bits (77), Expect = 0.17
Identities = 34/221 (15%), Positives = 72/221 (32%), Gaps = 51/221 (23%)
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVD------IMMGTFTKSFG 314
E++ I + AYI DE + E+D + I + + +K++
Sbjct: 178 ELVEIASEVGAYILSDEVYR------------SFSELDVPSIIEVYDKGIAVNSLSKTYS 225
Query: 315 SCG---GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKL 371
G G++A + ++ L+ Y I + ++ A + + +
Sbjct: 226 LPGIRIGWVAANHQVTDILR---DYRDYTM-ICAGVFDDLV-AQLALAHYQEILERNRHI 280
Query: 372 ARIRENSNFFRSELQKM-GFEVLGDNDSPVMP-------IMLYNPAKIPAFSRECL-RQN 422
+ EN +++ + P + + + F + L
Sbjct: 281 --LEENLAILDQWIEEEPLVSY-------IRPAVVSTSFVKIAVDMPMEDFCLQLLQEHG 331
Query: 423 VAVVT-VAFPATPLLLARARICISASHTKEDLIKALEVISR 462
V +V F R+ + +E LIK LE +S+
Sbjct: 332 VLLVPGNRFERDG----YVRLGFACE--QETLIKGLEKLSQ 366
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 33.1 bits (76), Expect = 0.17
Identities = 25/192 (13%), Positives = 54/192 (28%), Gaps = 29/192 (15%)
Query: 149 NELEECVARFVGKPAAIVFGMGYVTN-SAILPVLMRKG-SLIISDSLNHNSIVNGARGSG 206
E+ A +G A+ F G + A+ + L H + +
Sbjct: 50 EPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCH--LEIHEQDGL 107
Query: 207 ATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVE--------GIYSMEGELCK 258
+ + + ++ + P +++E + +
Sbjct: 108 KELHPIETILVGAADRLMTLDEIKALPDIA------CLLLELPQREIGGVAPAFS----E 157
Query: 259 FPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLE-VDTADVDIMMGTFTKSFGS-C 316
I C++ ++LD A + + E+ D+ + F K G
Sbjct: 158 LETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYIS-----FYKGLGGIA 212
Query: 317 GGYIAGSKELIQ 328
G +AG Q
Sbjct: 213 GAILAGPAAFCQ 224
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 33.3 bits (77), Expect = 0.18
Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 48/179 (26%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQ----YLKYTCPAHLYATSISPPAAEQ--IISA 354
++ +++KS G GY+ E+ Y P+ Q I+
Sbjct: 241 LVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYV-CAPSLFQKMIVKC 299
Query: 355 IKVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSP-----VMPIMLYNPA 409
+ +EN + L ++G+ P +
Sbjct: 300 Q----------GATGDINAYKENRDLLYEGLTRIGYHCF----KPDGAFYMFV------- 338
Query: 410 KIP-----AFSRECLRQNVAVVT-VAFPATPLLLARARICISASHTKEDLIKALEVISR 462
K AF + ++V +V F + RI +E + ++ +
Sbjct: 339 KALEDDSNAFCEKAKEEDVLIVAADGFGCPGWV----RISYCVD--REMIKHSMPAFEK 391
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 33.3 bits (77), Expect = 0.18
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYL---KYTCPAHLYATSISPPAAEQIISAIKV 357
++ T +KS+ G G E+I L + +L + AA +
Sbjct: 207 VVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD--HYNLDRLAQ---AA-----CVAA 256
Query: 358 ILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
+ + S +++ RE +F +EL+ +G++V+
Sbjct: 257 LRDQAYLSECCRRIRETRE---WFTTELRSIGYDVI 289
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 33.2 bits (76), Expect = 0.20
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 302 VDIMMGTFTKSFG----SCGGYIAGSKELIQYLKY 332
DI+ G+ K+ G + GGYIAG +E + +
Sbjct: 235 ADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATF 269
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate,
aspartate aminotransferase, O-antigen; HET: G4M; 1.60A
{Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Length = 391
Score = 32.9 bits (76), Expect = 0.23
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
G++C I+ + +++ + D A ++GA
Sbjct: 155 GQICDMDPILEVARRHNLLVIEDAAEAVGA 184
>2fnu_A Aminotransferase; protein-product complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP:
c.67.1.4 PDB: 2fni_A* 2fn6_A*
Length = 375
Score = 32.5 bits (75), Expect = 0.28
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
G+ + + +CKK+ D +H++G+
Sbjct: 132 GKSVEVESVQKLCKKHSLSFLSDSSHALGS 161
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 32.6 bits (75), Expect = 0.31
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 21/140 (15%)
Query: 222 EVLREQIAEGQPRTHRPWKKIMVIVE-----GI-YSMEGELCKFPEIIAICKKYKAYIYL 275
++L E+I E + + + K I I G+ SME + ++ I KY I
Sbjct: 159 DLLEEKIKELKAKGQKV-KLIYTIPTGQNPMGVTMSME----RRKALLEIASKYDLLIIE 213
Query: 276 DEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG---GYIAGSKELIQYLKY 332
D A+ + G + L +D I+ GT +K G+ G G+I E+++ +
Sbjct: 214 DTAY--NFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGT-GFRIGWIIAEGEILKKVL- 269
Query: 333 TCPAHLYATSISPPAAEQII 352
PA Q I
Sbjct: 270 ---MQKQPIDFCAPAISQYI 286
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 32.5 bits (74), Expect = 0.31
Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 33/201 (16%)
Query: 163 AAIVF--GMGYVTNSAILPVLM--RKGSLIIS--DSLNHNSIVNGARGSGATIRVFQHNT 216
+ F SAIL ++ + +I + H SI + A +
Sbjct: 78 KCVGFNRTS-----SAILATILALKPKKVIHYLPELPGHPSIERSCKIVNAKY----FES 128
Query: 217 PSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLD 276
+ E+ +I T I+ + L F ++I K +A +++D
Sbjct: 129 -DKVGEI-LNKI---DKDT----LVIITGSTMDLKVIE-LENFKKVINTAKNKEAIVFVD 178
Query: 277 EAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSC-GGYIAGSKELIQYLKYTCP 335
+A G R + D+++ + K GG +AG KEL+ +
Sbjct: 179 DAS-----GARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIE-- 231
Query: 336 AHLYATSISPPAAEQIISAIK 356
+ PP I A+K
Sbjct: 232 GTKFGLEAQPPLLAGIYRALK 252
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand
binding, DNA binding protein; NMR {Saccharomyces
cerevisiae}
Length = 116
Score = 30.7 bits (69), Expect = 0.32
Identities = 13/72 (18%), Positives = 26/72 (36%)
Query: 24 QIRDFFRKIIDWWSANNLQGYAPICLGLEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVE 83
Q F + +I+ N+ + +G + LY+ +Q G + W V +
Sbjct: 19 QYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQ 78
Query: 84 RFSNDSNKTLKR 95
R + L+
Sbjct: 79 RLQISDYQQLES 90
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 32.2 bits (74), Expect = 0.33
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 23/145 (15%)
Query: 217 PSHLEEVLREQIAEGQPRTHRPWKKIMVIVE-----GI-YSMEGELCKFPEIIAICKKYK 270
+ LE L E G + + K I V+ G+ S+E K ++ I +KY
Sbjct: 169 LNVLERKLSEFDKNG--KIKQV-KFIYVVSNFHNPAGVTTSLE----KRKALVEIAEKYD 221
Query: 271 AYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG---GYIAGSKELI 327
+I D+ + GA+ G V + ++ + +++ TF+K G G +AGSKE I
Sbjct: 222 LFIVEDDPY--GALRYEGETVDPIFKIGGPERVVLLNTFSKVLAP-GLRIGMVAGSKEFI 278
Query: 328 QYLKYTCPAHLYATSISPPAAEQII 352
+ + + + PA +
Sbjct: 279 RKIV----QAKQSADLCSPAITHRL 299
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 32.3 bits (73), Expect = 0.37
Identities = 47/341 (13%), Positives = 101/341 (29%), Gaps = 39/341 (11%)
Query: 142 GGTLMVH--NELEECVARFVGKPAAIVFGMGYVTNSAILPVL-----MRKGSLIISDSLN 194
G ++M N++ E + +G T +I L +++I +
Sbjct: 127 GASIMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYAS 185
Query: 195 HNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIYSMEG 254
H S + G +R+ + V E I + + V+ +
Sbjct: 186 HKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPR 245
Query: 255 ELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFG 314
EI IC+ Y ++ A++I + L + VD ++ + K+
Sbjct: 246 NSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEK----LKKAFKYRVDAVVSSSDKNLL 301
Query: 315 ---SCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKL 371
G + E I+ + + P AT + ++ +G + +
Sbjct: 302 TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLV-----SLLS-MGSKNY---LELV 352
Query: 372 ARIRENSNFFRSELQKMGFE----VLGDNDSPVMPIMLY-NPAKIPA--FSRECLRQNVA 424
+ + L + + L I + +P +I A ++
Sbjct: 353 KNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGI 412
Query: 425 VVTVAFPA-------TPLLLARARICISASHTKEDLIKALE 458
T F ++ A I + + + LE
Sbjct: 413 KKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI-VNSVSKLE 452
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain,
DNA binding protein; NMR {Saccharomyces cerevisiae}
SCOP: a.4.3.1 PDB: 1kn5_A
Length = 123
Score = 30.7 bits (69), Expect = 0.37
Identities = 13/72 (18%), Positives = 26/72 (36%)
Query: 24 QIRDFFRKIIDWWSANNLQGYAPICLGLEDFYIRRLYLRIQDCFGRPISSAPDAWFDVVE 83
Q F + +I+ N+ + +G + LY+ +Q G + W V +
Sbjct: 18 QYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQ 77
Query: 84 RFSNDSNKTLKR 95
R + L+
Sbjct: 78 RLQISDYQQLES 89
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 32.2 bits (73), Expect = 0.39
Identities = 24/193 (12%), Positives = 62/193 (32%), Gaps = 42/193 (21%)
Query: 300 ADVDIMMGTFTKSFGSCG---GY-IAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAI 355
AD DI++ T +K G G G+ + + + L T P Q + ++
Sbjct: 240 ADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLN---YMTKNTE-GTPRETQ-LRSL 294
Query: 356 KVILGEDGSSRGAQKLARIRENSNFFRSELQKM------GFEVLGDNDSPVMP------- 402
KV+ ++ + + +R+ + F +L++ + +P
Sbjct: 295 KVL--KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352
Query: 403 -----------IMLYNPAKIPAFSRECLRQ-NVAVVT-VAFPATPLLLARARICISASHT 449
+ + + + + V F A+ + R+ + +
Sbjct: 353 FRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYV---RLSLIKT-- 407
Query: 450 KEDLIKALEVISR 462
++D + + +
Sbjct: 408 QDDFDQLMYYLKD 420
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 31.8 bits (73), Expect = 0.44
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYLKYTCPAHLYAT-SISPPAAEQIISAIKVIL 359
I + + K F G G+ G ELI ++ A Y + P + A+
Sbjct: 226 ITISSAAKMFNCTGWKIGWACGPAELIAGVRA---AKQYLSYVGGAPFQPAVALALD--T 280
Query: 360 GEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
+ + L R + + L ++GF V
Sbjct: 281 EDAWVAALRNSLRARR---DRLAAGLTEIGFAVH 311
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.48
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 125 IE-SLKKYSPSTCSSRVDGGTLMVHNELE 152
++ SLK Y+ + + L + +E
Sbjct: 25 LQASLKLYADDSAPA------LAIKATME 47
Score = 29.5 bits (65), Expect = 1.3
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 324 KELIQYLKYTCPAHLYATSISPPAAEQIISA 354
K+L LK LYA +P A I A
Sbjct: 23 KKLQASLK------LYADDSAPALA---IKA 44
Score = 29.5 bits (65), Expect = 1.6
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 11/34 (32%)
Query: 382 RSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFS 415
+ L+K+ + + LY PA +
Sbjct: 19 KQALKKL--------QAS---LKLYADDSAPALA 41
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 31.8 bits (73), Expect = 0.54
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYLKYTCPAHLYAT-SISPPAAEQIISAIKVIL 359
+ + +F K++ G GY + ++ H Y T S++ PA + ++
Sbjct: 229 VAVSSFGKTYHMTGWKVGYCVAPAPISAEIRK---VHQYLTFSVNTPAQLALADMLR--A 283
Query: 360 GEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
+ + R + + L + E+L
Sbjct: 284 EPEHYLALPDFYRQKR---DILVNALNESRLEIL 314
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis;
HET: MSE PMP; 1.80A {Coxiella burnetii}
Length = 374
Score = 31.3 bits (72), Expect = 0.61
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCEL 294
G + P + I KK+ +I D +I + V
Sbjct: 136 GNIADMPALAKIAKKHNLHIVEDACQTILGRIN-DKFVGSW 175
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 31.5 bits (72), Expect = 0.64
Identities = 22/142 (15%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 222 EVLREQIAEGQPRTHRPWKKIMVIVE-----GI-YSMEGELCKFPEIIAICKKYKAYIYL 275
E+L E++ E + + + K + + G+ + + + ++ + +Y +
Sbjct: 201 EILEEKLKELKSQGKKV-KVVYTVPTFQNPAGVTMNED----RRKYLLELASEYDFIVVE 255
Query: 276 DEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG---GYIAGSKELIQYLKY 332
D+ + G + +G ++ +D I +GTF+K G G++ G +I+ ++
Sbjct: 256 DDPY--GELRYSGNPEKKIKALDNEGRVIYLGTFSKILAP-GFRIGWMVGDPGIIRKME- 311
Query: 333 TCPAHLYATSISPPAAEQIISA 354
+T + Q+++
Sbjct: 312 ---IAKQSTDLCTNVFGQVVAW 330
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 30.6 bits (70), Expect = 1.0
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 23/98 (23%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYLK-----YTCPAHLYATSISPPAAEQIISAI 355
++ +F+KS+G G G + G ELI +K ++ + +
Sbjct: 191 LVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQWFC---------NVGTLD---LHALE 238
Query: 356 KVILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
+ + K R L+ +G+ V
Sbjct: 239 AALDNDRAREAHIAKTLAQRR---RVADALRGLGYRVA 273
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP;
1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB:
1mdx_A* 1mdz_A*
Length = 393
Score = 30.6 bits (70), Expect = 1.1
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
G I A+ ++Y + D AH+ G
Sbjct: 138 GAPADLDAIYALGERYGIPVIEDAAHATGT 167
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 30.6 bits (70), Expect = 1.2
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYL-KYTCPAHLYATSISPPAAEQIISAIKVIL 359
++ T +K+F G GY + I + P HL +++S AA + L
Sbjct: 224 VVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLPYHL--SALSQAAAIVALRHSADTL 281
Query: 360 GEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
+ ++ + L+++G+ V+
Sbjct: 282 ---------GTVEKLSVERVRVAARLEELGYAVV 306
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A
{Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Length = 273
Score = 30.5 bits (68), Expect = 1.2
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 168 GMGYVTNSAILPVLMRKGSLIISDS----LNHNSIVNGARGSGATIRVFQHNTPSHLEEV 223
V PV++ G +D + +++ GA G +FQH+ +
Sbjct: 193 SFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRA 252
Query: 224 LREQIAEGQP 233
+ + + E
Sbjct: 253 VCKIVHENAD 262
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 30.2 bits (69), Expect = 1.5
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 259 FPEIIAICKKYKAYIYLDEAHS-IGAVGKTGRG---VCELLEVDTADVDIMMGTFTKSFG 314
+ + K+ + DE +S I C L + +++ + +K
Sbjct: 176 LISWVKLALKHDFILINDECYSEIYE-NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSS 234
Query: 315 SCG---GYIAGSKELIQYLK 331
+ G G+IAG L++ K
Sbjct: 235 APGLRSGFIAGDSRLLEKYK 254
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET:
TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Length = 373
Score = 30.2 bits (69), Expect = 1.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCEL 294
G+ EI I KKY + D A + G++ K G V L
Sbjct: 135 GQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYK-GMKVGSL 174
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR
{Pseudomonas fluorescens}
Length = 212
Score = 29.9 bits (67), Expect = 1.6
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 207 ATIRVFQHNTPSHLEEVLREQIAEGQPRTH 236
A ++ T L + + ++ H
Sbjct: 183 ADA-IYTWPTLKSLADEVDRRVQLEHHHHH 211
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars,
antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces
venezuelae} PDB: 2oge_A*
Length = 399
Score = 30.2 bits (69), Expect = 1.6
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCEL 294
G + + ++ +I D A + GA + GR +
Sbjct: 162 GHPADMDALRELADRHGLHIVEDAAQAHGARYR-GRRIGAG 201
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei}
PDB: 3f5m_A*
Length = 487
Score = 30.1 bits (68), Expect = 1.7
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 20/69 (28%)
Query: 341 TSISPPAAEQIISAIK-------VILGEDGSSRGAQKLARIRENSNFFRSELQKMGFEVL 393
+S P ++++ ++ +G DG+ RGA +++ ++ + + V
Sbjct: 171 SSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGALVISQ--------EAKRRGVDISVF 222
Query: 394 G-----DND 397
G DND
Sbjct: 223 GVPKTIDND 231
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 29.8 bits (68), Expect = 2.0
Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYLK 331
+M+ +F+ ++G G GYI +K+ ++ +
Sbjct: 190 VMVYSFSHAYGIPGLRIGYIVANKDFMKRVA 220
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 29.9 bits (68), Expect = 2.2
Identities = 18/226 (7%), Positives = 67/226 (29%), Gaps = 43/226 (19%)
Query: 261 EIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTFTKSFGSCG--- 317
++ + ++ + +D A+ + G E + ++ I+ + +K G G
Sbjct: 204 KLDRLANQHNIPLVIDNAYGVPFPGII---FSEARPLWNPNI-ILCMSLSK-LGLPGSRC 258
Query: 318 GYIAGSKELIQYLKYTCPAHLYATSISPPAAEQIISAIKVILGEDGSSRGAQKLARI--R 375
G I + + I + + + ++ ++ + R ++ + +
Sbjct: 259 GIIIANDKTITAIA---NMNGIISLAPGGMGPAMMCE---MIKRNDLLRLSETVIKPFYY 312
Query: 376 ENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNP-------AKIP-------AFSRECLRQ 421
+ + +++ +++ P + +
Sbjct: 313 QRVQQTIAIIRRY---------LSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKAR 363
Query: 422 NVAVV--TVAFPATPLLLARARICI--SASHTKEDLIKALEVISRV 463
V +V FP C+ + + + +++++
Sbjct: 364 GVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEE 409
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase);
rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A
{Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Length = 388
Score = 29.5 bits (67), Expect = 2.4
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 233 PRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVC 292
PRT K IM + M G + + I + D AH+ GA + G+ V
Sbjct: 125 PRT----KVIMPV-----HMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQ-GKRVG 174
Query: 293 EL 294
EL
Sbjct: 175 EL 176
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET:
ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A*
3nu8_A* 3nu7_A* 3nub_A*
Length = 367
Score = 29.0 bits (66), Expect = 3.4
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCEL 294
G+ F I AI KY + D A S GA K G+ C L
Sbjct: 134 GQCADFDAINAIASKYGIPVIEDAAQSFGASYK-GKRSCNL 173
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 29.1 bits (66), Expect = 3.8
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 254 GELCKFPEIIAICKKYKAYIYLDEAHSIGAVGKTGRGVCELLEVDTADVDIMMGTF---- 309
G C ++ + ++ +Y D AH++G GR L D F
Sbjct: 149 GRPCAADQLRKVADEHGLRLYFDAAHALGCAVD-GRPAGSL-----GD----AEVFSFHA 198
Query: 310 TKSFGS 315
TK+ +
Sbjct: 199 TKAVNA 204
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 29.1 bits (66), Expect = 3.9
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 28/131 (21%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYL-KYTCPAHLYATSISPPAAEQIISAIKVIL 359
I++ TF+K G GY +I + +Y + + + A A+ +
Sbjct: 206 ILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAGEKINFSGV---DA-----ALASMN 257
Query: 360 GEDGSSRGAQKLARIRENSNFFRSELQKMGFEVLGDNDSPVMP-----IMLYNPAKIPAF 414
+ + R+ L+ + L P + + +
Sbjct: 258 DSAFITYSKKSNDVSRQ---ILLKALEDLKLPYL--------PSEGNFVFHQLVVPLKDY 306
Query: 415 SRECLRQNVAV 425
V +
Sbjct: 307 QTHMADAGVLI 317
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 28.7 bits (65), Expect = 4.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYL 330
+ +GTF+K +G G GY + +I
Sbjct: 220 LYLGTFSKLYGLGGLRIGYGIANANIISAF 249
>3l6t_A TRAI, mobilization protein TRAI; TRWC superfamily of relaxase
enzymes, conjugative relaxase, relaxase, conjugal
nickase, hydrolase; HET: CIT; 1.93A {Escherichia coli}
PDB: 3l57_A*
Length = 302
Score = 28.9 bits (64), Expect = 4.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 379 NFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSR 416
EL K G+E+ ++ + + ++ +I AFSR
Sbjct: 200 QELALELTKAGYELRYNSKNNTFDMAHFSDEQIRAFSR 237
>1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein,
PSI, protein structure initiative, midwest center for
structural genomics; HET: MSE; 1.80A {Bacillus subtilis}
SCOP: b.58.1.2
Length = 195
Score = 28.4 bits (63), Expect = 4.3
Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 146 MVHNELEECVARFVGKPAAIVFGMGYVTNSAILPVLMRKGSLIISDSLNHNSIVNGAR-- 203
+V E +A +G P ILP + ++ +S + S+ G+R
Sbjct: 71 IVSIEECNEIALKMGVPR-------------ILPEWLGA-NVAVSGMPDLTSLKEGSRII 116
Query: 204 -GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIMVIVEGIY 250
SGA + N P + + QP+ + + + + GI
Sbjct: 117 FPSGAALLCEGENDPCIQPGEVIQSYYPDQPKLASAFVRHALGIRGIV 164
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 28.7 bits (65), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 304 IMMGTFTKSFGSCG---GYIAGSKELIQYL 330
I+ TF+K +G GY KE+I+ L
Sbjct: 218 IITRTFSKIYGLASARVGYGIADKEIIRQL 247
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 28.5 bits (64), Expect = 5.5
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 293 ELLEVDTADVDIMMGTFTKSF--GSCGGYIAGSKELIQYLKYTCPAHLYATSISPPAAEQ 350
+ D + + +K G+ G++A S++ I++L +L A SI P EQ
Sbjct: 235 LARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLS----KYLGAQSIGPNKVEQ 290
Query: 351 II 352
Sbjct: 291 AR 292
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin,
aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus
circulans} PDB: 2c7t_A*
Length = 418
Score = 28.4 bits (64), Expect = 5.5
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 9/51 (17%)
Query: 233 PRTHRPWKKIMVIVEGIYSMEGELCKFPEIIAICKKYKAYIYLDEAHSIGA 283
+T K I+ + + G + EI I +++ ++ D A S G+
Sbjct: 129 DKT----KAIIPV-----HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGS 170
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A
{Escherichia coli} PDB: 3gnd_A* 3gkf_O
Length = 295
Score = 28.3 bits (62), Expect = 5.6
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 167 FGMGYVTNSAILPVLMRKGSLIISDSL---NHNSIVNGARGSGATIRVFQHNTPSHLEEV 223
G + +P+++ G + +I GA G +FQ + P + +
Sbjct: 213 KGFERIVAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKA 272
Query: 224 LREQIAEGQP 233
++ + +
Sbjct: 273 VQAVVHHNET 282
>2rgq_A Domain of unknown function with A cystatin-like F; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 1.80A {Nostoc
punctiforme} SCOP: d.17.4.25
Length = 144
Score = 27.5 bits (61), Expect = 6.3
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 297 VDTADVDIMMGTFTK--SFGSCGGYIAGSKELIQYLKYTCPAHLYAT 341
+D DV+ + TF + G G +EL Q
Sbjct: 23 LDKEDVENYLATFASDGALQGFWGIAKGKEELRQGFYAMLDTFARGK 69
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain,
non-heme iron, conformational change, dioxygenase,
oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Length = 698
Score = 28.4 bits (62), Expect = 7.2
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 381 FRSELQKMGFEVLGDNDSPVMPIMLYNPAKIP 412
F+S L + ++ N V P P +P
Sbjct: 662 FKSNLANITKQITERNQGMVSPYTWLIPGHVP 693
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.411
Gapped
Lambda K H
0.267 0.0874 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,760,908
Number of extensions: 490485
Number of successful extensions: 1443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 114
Length of query: 489
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 392
Effective length of database: 3,993,456
Effective search space: 1565434752
Effective search space used: 1565434752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.2 bits)