BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046231
         (83 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P57989|CSD_PASMU Probable cysteine desulfurase OS=Pasteurella multocida (strain
           Pm70) GN=csd PE=3 SV=1
          Length = 421

 Score = 30.0 bits (66), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 30  FDTEVTAYFE--RNKIKNLTGVKAKEFLIWIS 59
           +D + TA FE  R  +KN  G +++E +IW S
Sbjct: 77  YDEKQTALFEQARENVKNFIGAESEETIIWTS 108


>sp|Q9HDV3|YOE7_SCHPO Hid-1 family protein P19A11.07c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPBC1346.03 PE=3 SV=3
          Length = 688

 Score = 29.3 bits (64), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 17  QKKKHKFENVVVWFDTEVTAYFERNKI 43
           QK K KFE ++ W +TE + +F  + I
Sbjct: 534 QKDKRKFEPIIAWSETEFSEFFVTSNI 560


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,983,941
Number of Sequences: 539616
Number of extensions: 1110431
Number of successful extensions: 2034
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2033
Number of HSP's gapped (non-prelim): 3
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)