Query 046231
Match_columns 83
No_of_seqs 108 out of 250
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:26:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 100.0 1.7E-29 5.9E-34 180.1 3.9 75 1-82 74-149 (170)
2 2nzc_A Hypothetical protein; s 46.9 3.6 0.00012 25.9 -0.3 16 40-55 66-81 (86)
3 2wnv_A C1Q chain A, complement 41.5 11 0.00039 24.0 1.5 22 3-24 32-53 (134)
4 2ka3_A Emilin-1; C1Q-like doma 38.8 14 0.00047 24.8 1.7 22 3-24 45-66 (162)
5 2odb_B Serine/threonine-protei 37.9 13 0.00046 19.1 1.2 10 2-11 14-23 (35)
6 2wnv_B C1Q chain B, complement 37.5 13 0.00044 23.9 1.3 22 3-24 35-56 (136)
7 2wnv_C C1Q chain C, complement 37.3 13 0.00045 23.7 1.3 22 3-24 36-57 (131)
8 2j97_A Replicase polyprotein 1 34.3 40 0.0014 22.1 3.3 26 5-30 55-83 (109)
9 3ee7_A Replicase polyprotein 1 29.8 49 0.0017 22.0 3.2 23 8-30 62-87 (121)
10 1o91_A Collagen alpha 1(VIII) 29.1 69 0.0024 21.6 4.0 22 3-24 79-100 (178)
11 4f3j_A Complement C1Q tumor ne 27.5 82 0.0028 20.1 4.0 22 3-24 34-55 (148)
12 1gr3_A Collagen X; extracellul 27.3 24 0.0008 23.6 1.3 22 3-24 61-82 (160)
13 2ov2_I Serine/threonine-protei 26.3 27 0.00093 17.9 1.2 10 2-11 14-23 (35)
14 2qme_I CRIB domain of the seri 25.1 15 0.0005 19.1 -0.1 10 2-11 14-23 (36)
15 3fqm_A NS5A, non-structural pr 24.2 45 0.0016 23.5 2.3 17 31-48 30-46 (177)
16 3kf6_B Protein TEN1; OB fold, 22.4 82 0.0028 20.4 3.1 19 33-58 67-85 (105)
17 1uw7_A NSP9; viral protein, re 20.9 77 0.0026 21.6 2.9 23 8-30 92-117 (143)
18 2ffg_A YKUJ; structural genomi 20.1 68 0.0023 20.2 2.3 25 2-26 39-67 (87)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=99.95 E-value=1.7e-29 Score=180.15 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=71.0
Q ss_pred CcceeccccEEEEEecCeEEEEEceE-EEEEccEEEEEEecCceeeceeeeEEEEEEeeEeeEEEEcCCCCCCeEEEEcC
Q 046231 1 ECGHVKELGFVWLKHKQKKKHKFENV-VVWFDTEVTAYFERNKIKNLTGVKAKEFLIWISLCEIYVNGSSPNGSITFKTP 79 (83)
Q Consensus 1 e~g~~~~tG~~~v~l~~~c~~~f~~~-~v~Y~~~Itg~l~~gki~~l~GVk~K~lf~W~~v~eI~vdg~~~sgkI~F~~~ 79 (83)
|||||++||+|||+|+++|+|+|++. +|+|+++|||+|++|+|++|+||++|+| +|++|++|.++ +++|+|++
T Consensus 74 ~Y~l~~~tG~f~V~l~~~C~~~f~~~~~v~Y~~~VtG~l~~GkI~~L~GVk~K~L-lWv~V~eI~v~----~~kI~F~v- 147 (170)
T 1ydu_A 74 NYEFDEETKKLTVLIPSICEVGYKDSSVLKFTTTVTGHLEKGKLTDVEGIKTKVM-IWVKVTSISTD----ASKVYFTA- 147 (170)
T ss_dssp EEEECTTTCSEEEECSSCEEEESTTSSEEEECSEEEEEECSSCEEEEESCEEESS-SEESCCCBEEC----SSSEECTT-
T ss_pred EEEEECCCcEEEEEeCCCEEEEecCccEEEEcCEEEEEEcCCcCccccCEEEEEE-EEeeEEEEEEe----CCEEEEEE-
Confidence 68999999999999999999999865 8999999999999999999999999999 99999999996 78999997
Q ss_pred CCC
Q 046231 80 AGL 82 (83)
Q Consensus 80 ~g~ 82 (83)
|+
T Consensus 148 -Gi 149 (170)
T 1ydu_A 148 -GM 149 (170)
T ss_dssp -SS
T ss_pred -cC
Confidence 55
No 2
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=46.91 E-value=3.6 Score=25.87 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.9
Q ss_pred cCceeeceeeeEEEEE
Q 046231 40 RNKIKNLTGVKAKEFL 55 (83)
Q Consensus 40 ~gki~~l~GVk~K~lf 55 (83)
.|+|.+|+||++|-+.
T Consensus 66 ~gkLg~i~GV~vKt~~ 81 (86)
T 2nzc_A 66 SGKLGQISGVRVKTVP 81 (86)
T ss_dssp HHHHHTSTTEEEEEEE
T ss_pred HHHhCCCCCEEEEEEE
Confidence 4789999999999874
No 3
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=41.52 E-value=11 Score=24.04 Aligned_cols=22 Identities=9% Similarity=-0.117 Sum_probs=19.8
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||.+||.|+...+....+.|-
T Consensus 32 ~yn~~TG~Ftap~~G~Y~Fs~~ 53 (134)
T 2wnv_A 32 PYQNHSGRFVCTVPGYYYFTFQ 53 (134)
T ss_dssp CEETTTTEEECCSCEEEEEEEE
T ss_pred CccCCCCEEECeeCCEEEEEEE
Confidence 6999999999999988888884
No 4
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=38.80 E-value=14 Score=24.76 Aligned_cols=22 Identities=9% Similarity=-0.250 Sum_probs=19.9
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||.+||.|+...+....+.|-
T Consensus 45 ~yn~~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 45 YYDPETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp CEETTTTEEECCCCEEEEEEEC
T ss_pred ceECCCCEEECCCCeEEEEEEE
Confidence 6999999999999999999883
No 5
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}
Probab=37.89 E-value=13 Score=19.11 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=8.5
Q ss_pred cceeccccEE
Q 046231 2 CGHVKELGFV 11 (83)
Q Consensus 2 ~g~~~~tG~~ 11 (83)
+|||+.||.|
T Consensus 14 vg~d~~tG~f 23 (35)
T 2odb_B 14 TSFDPKEGKF 23 (35)
T ss_dssp EEEETTTTEE
T ss_pred eeECCCCCcc
Confidence 5899999976
No 6
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=37.45 E-value=13 Score=23.95 Aligned_cols=22 Identities=9% Similarity=-0.130 Sum_probs=19.7
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||.+||.|+...+....+.|-
T Consensus 35 ~yn~~TG~Ftap~~G~Y~Fs~~ 56 (136)
T 2wnv_B 35 NYEPRSGKFTCKVPGLYYFTYH 56 (136)
T ss_dssp CEETTTTEEECSSCEEEEEEEE
T ss_pred cccCCCCEEECCcCeEEEEEEE
Confidence 6999999999998888888885
No 7
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=37.29 E-value=13 Score=23.72 Aligned_cols=22 Identities=9% Similarity=-0.158 Sum_probs=19.6
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||.+||.|+...+....+.|-
T Consensus 36 ~yn~~TG~Ftap~~G~Y~Fs~~ 57 (131)
T 2wnv_C 36 DYDTSTGKFTCKVPGLYYFVYH 57 (131)
T ss_dssp CEETTTTEEECSSCEEEEEEEE
T ss_pred CccCCCCEEEcccCCEEEEEEE
Confidence 6999999999998888888884
No 8
>2j97_A Replicase polyprotein 1AB; SSB, zinc, HCOV, membrane, helicase, SARS COV, viral replicase, RNA replication, ATP-binding; 1.75A {Human coronavirus 229E} PDB: 2j98_A 2j98_B
Probab=34.30 E-value=40 Score=22.09 Aligned_cols=26 Identities=8% Similarity=0.145 Sum_probs=20.5
Q ss_pred eccccEEEEEecCeEEEEEceE---EEEE
Q 046231 5 VKELGFVWLKHKQKKKHKFENV---VVWF 30 (83)
Q Consensus 5 ~~~tG~~~v~l~~~c~~~f~~~---~v~Y 30 (83)
-.++|.+.+.|+-||.+.-+.- +|.|
T Consensus 55 e~d~g~v~iELePPckF~v~~~~G~~vkY 83 (109)
T 2j97_A 55 EHDSGVVTVELEPPCRFVIDTPTGPQIKY 83 (109)
T ss_dssp CCSSSCEEEEBCCCEEEEECCTTSCEEEE
T ss_pred EccCCEEEEEcCCCcEEEEECCCCCEEEE
Confidence 3568999999999999988763 4555
No 9
>3ee7_A Replicase polyprotein 1A; GXXXG, dimerization, SARS-COV, helix-helix, hydrolase, membr metal-binding, protease, RNA-binding, thiol protease; 2.60A {Sars coronavirus} SCOP: b.140.1.1 PDB: 1qz8_A
Probab=29.84 E-value=49 Score=22.01 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.4
Q ss_pred ccEEEEEecCeEEEEEceE---EEEE
Q 046231 8 LGFVWLKHKQKKKHKFENV---VVWF 30 (83)
Q Consensus 8 tG~~~v~l~~~c~~~f~~~---~v~Y 30 (83)
||.+.+.|+-||.+.-+.- .|.|
T Consensus 62 ~g~v~iELePPckF~v~~~~g~~vkY 87 (121)
T 3ee7_A 62 TGTIYTELEPPCRFVTDTPKGPKVKY 87 (121)
T ss_dssp CEEEEEEBCCCEEEEECCTTSCEEEE
T ss_pred CCeEEEecCCCcEEEEEcCCCCEEEE
Confidence 4899999999999988753 4554
No 10
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=29.14 E-value=69 Score=21.63 Aligned_cols=22 Identities=5% Similarity=-0.070 Sum_probs=19.9
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||.+||.|+...+....+.|-
T Consensus 79 ~Yn~~TG~FTaPv~GvY~Fsft 100 (178)
T 1o91_A 79 NYNPQTGIFTCEVPGVYYFAYH 100 (178)
T ss_dssp CEETTTTEEECCSCEEEEEEEE
T ss_pred ceeCCCCEEEcccCeEEEEEEE
Confidence 6999999999999998888885
No 11
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=27.47 E-value=82 Score=20.08 Aligned_cols=22 Identities=5% Similarity=-0.295 Sum_probs=19.4
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||..||.|+.-.+....+.|-
T Consensus 34 ~yn~sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 34 HYDAVTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp CEETTTTEEECCSCEEEEEEEE
T ss_pred CccCCCCeEECCcceEEEEEEE
Confidence 6999999999988888888775
No 12
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=27.34 E-value=24 Score=23.58 Aligned_cols=22 Identities=5% Similarity=-0.124 Sum_probs=19.7
Q ss_pred ceeccccEEEEEecCeEEEEEc
Q 046231 3 GHVKELGFVWLKHKQKKKHKFE 24 (83)
Q Consensus 3 g~~~~tG~~~v~l~~~c~~~f~ 24 (83)
+||.+||.|+...+....+.|-
T Consensus 61 ~yn~~TG~FtaPv~GvY~Fsft 82 (160)
T 1gr3_A 61 HYDPRTGIFTCQIPGIYYFSYH 82 (160)
T ss_dssp CEETTTTEEECSSCEEEEEEEE
T ss_pred ceeCCCCEEEcccCCEEEEEEE
Confidence 6999999999998888888885
No 13
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}
Probab=26.34 E-value=27 Score=17.86 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=8.0
Q ss_pred cceeccccEE
Q 046231 2 CGHVKELGFV 11 (83)
Q Consensus 2 ~g~~~~tG~~ 11 (83)
+|||++||.|
T Consensus 14 vg~d~~tg~~ 23 (35)
T 2ov2_I 14 TGFDQHEQKF 23 (35)
T ss_dssp EEEETTTTEE
T ss_pred eeeCCCCCcc
Confidence 5899999865
No 14
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}
Probab=25.15 E-value=15 Score=19.10 Aligned_cols=10 Identities=20% Similarity=0.095 Sum_probs=8.2
Q ss_pred cceeccccEE
Q 046231 2 CGHVKELGFV 11 (83)
Q Consensus 2 ~g~~~~tG~~ 11 (83)
+|||+.||+|
T Consensus 14 vg~d~~tG~~ 23 (36)
T 2qme_I 14 VGFDAVTGEF 23 (36)
T ss_dssp ECCBTTTTBC
T ss_pred cccCCCCCcc
Confidence 5899999974
No 15
>3fqm_A NS5A, non-structural protein 5A; HCV, domain I, phosphoprotein, RNA-binding, metal BIND protein; 1.90A {Hepatitis c virus} PDB: 3fqq_A* 1zh1_A
Probab=24.16 E-value=45 Score=23.49 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=14.1
Q ss_pred ccEEEEEEecCceeecee
Q 046231 31 DTEVTAYFERNKIKNLTG 48 (83)
Q Consensus 31 ~~~Itg~l~~gki~~l~G 48 (83)
...|||.|.+|+|+ +.|
T Consensus 30 Ga~ItGhVkNG~mr-i~g 46 (177)
T 3fqm_A 30 GAQITGHVKNGSMR-IVG 46 (177)
T ss_dssp SCEEEEEEETTEEE-EEC
T ss_pred CcEEEEEEeCCEEE-Eec
Confidence 56899999999998 544
No 16
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=22.38 E-value=82 Score=20.39 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=15.1
Q ss_pred EEEEEEecCceeeceeeeEEEEEEee
Q 046231 33 EVTAYFERNKIKNLTGVKAKEFLIWI 58 (83)
Q Consensus 33 ~Itg~l~~gki~~l~GVk~K~lf~W~ 58 (83)
+|=||+..+ +.++.+++|-
T Consensus 67 NVvGYir~~-------v~VqAl~lws 85 (105)
T 3kf6_B 67 NIVGRKRQD-------GIVDVLLIRS 85 (105)
T ss_dssp EEEEEEEET-------TEEEEEEEEE
T ss_pred EEEEEEecC-------cEEEEEEEee
Confidence 466888774 9999999994
No 17
>1uw7_A NSP9; viral protein, replicase protein, RNA-binding; 2.8A {Sars coronavirus hku-39849} SCOP: b.140.1.1
Probab=20.93 E-value=77 Score=21.61 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.2
Q ss_pred ccEEEEEecCeEEEEEceE---EEEE
Q 046231 8 LGFVWLKHKQKKKHKFENV---VVWF 30 (83)
Q Consensus 8 tG~~~v~l~~~c~~~f~~~---~v~Y 30 (83)
+|.+.+.|+-||.+.-+.- .|.|
T Consensus 92 ~g~v~iELePPckF~v~~~~G~~VkY 117 (143)
T 1uw7_A 92 TGTIYTELEPPCRFVTDTPKGPKVKY 117 (143)
T ss_dssp SCEEEEEBCCCCEEEECCTTSCEEEE
T ss_pred ceEEEEecCCCcEEEEEcCCCCEEEE
Confidence 5699999999999988753 4554
No 18
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=20.12 E-value=68 Score=20.17 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=14.6
Q ss_pred cceeccccEEEEE-e---cCeEEEEEceE
Q 046231 2 CGHVKELGFVWLK-H---KQKKKHKFENV 26 (83)
Q Consensus 2 ~g~~~~tG~~~v~-l---~~~c~~~f~~~ 26 (83)
+-|+++|+-|.+. . +.+-.+.|+++
T Consensus 39 V~y~~~t~~F~L~~~~~~~~~~~fqFDnI 67 (87)
T 2ffg_A 39 VKYFEKNQTFELTVFQKGEKPNTYPFDNI 67 (87)
T ss_dssp EEEETTTTEEEEEEEETTEEEEEEEESCH
T ss_pred EEEecCCCeEEEEEecCCCcccccccCCc
Confidence 3477777777773 3 34455556554
Done!