BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046232
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT
 pdb|2E50|B Chain B, Crystal Structure Of SetTAF-1betaINHAT
 pdb|2E50|P Chain P, Crystal Structure Of SetTAF-1betaINHAT
 pdb|2E50|Q Chain Q, Crystal Structure Of SetTAF-1betaINHAT
          Length = 225

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 10  FENAVKGRLYKVADAYENNPMIQNKKGHTALHLESALGNAALCHCLAWKNPKLVAFRNNQ 69
           FE+   G  Y++   ++ NP  +NK      H+  +   ++    + WK+ K +  R++Q
Sbjct: 115 FEDIKSG--YRIDFYFDENPYFENKVLSKEFHMNESGDPSSKSTEIKWKSGKDMTKRSSQ 172

Query: 70  SETLLFLASLHRKKAAFLC 88
           ++        H +  +F  
Sbjct: 173 TQNKASRKRQHEEPESFFT 191


>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
           Horseshoe Crab)
          Length = 269

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 88  CLHFFNQEKDGKTSSRKHNGDNFFTL 113
           CLH  N   D   S  +HNG NF T+
Sbjct: 170 CLHIGNYSGDAGNSFGRHNGHNFSTI 195


>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
           Inhibitor
 pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
           Inhibitor
          Length = 135

 Score = 26.9 bits (58), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 36  GHTALHLESALGNAALCHCLAWKNPKLVAFRNNQSETLLFLASL--HRKKAAFLCLHFFN 93
           GHT LHL + LG+  +   L  KN   V    N   T L LA+   H +    L  H  +
Sbjct: 47  GHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105

Query: 94  ---QEKDGKTS 101
              Q+K GKT+
Sbjct: 106 VNAQDKFGKTA 116


>pdb|3BUT|A Chain A, Crystal Structure Of Protein Af_0446 From Archaeoglobus
          Fulgidus
          Length = 136

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 20 KVADAYENNPMIQNKKGHTALHLESALGNAAL 51
          KVAD YEN+P+       T L     L N+ L
Sbjct: 49 KVADGYENSPVTVKPASATTLKFSLRLNNSFL 80


>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
          Complex
          Length = 282

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 31 IQNKKGHTALHLESALGNAALCHCL-AWKNPKLVAFRNNQSETLLFLA 77
          +QN  G TALHL + LG A+    L A     LVA R     T L LA
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH--TALHLA 85


>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
          Complex
          Length = 282

 Score = 25.4 bits (54), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 31 IQNKKGHTALHLESALGNAALCHCL-AWKNPKLVAFRNNQSETLLFLA 77
          +QN  G TALHL + LG A+    L A     LVA R     T L LA
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGH--TALHLA 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,911,656
Number of Sequences: 62578
Number of extensions: 136572
Number of successful extensions: 307
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 22
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)