BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046233
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 281 bits (718), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 201/331 (60%), Gaps = 4/331 (1%)
Query: 186 DRAKIFVKAGTGGNGVVAFRREKYVPMXXXXXXXXXXXXNVYVEVDESMNSLLPFRNSVH 245
D+ K++VK G GGNG VAFRREKYVP +V EVDE + +L FR H
Sbjct: 4 DQVKVYVKGGDGGNGXVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLXDFRYKKH 63
Query: 246 FRAGRGSHGQGRMQSGAKGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPXXXXX 305
F+A RG HG + Q G D V+KV PGTV+ + +V+ +L GQ+A++
Sbjct: 64 FKAIRGEHGXSKNQHGRNADDXVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGG 123
Query: 306 XXNASFKSGTNKVPRIAENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQP 365
N+ F + N P+++ENGE G E ++ LELK++ADVG+VG P+ GKSTLLSV+S+A+P
Sbjct: 124 RGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKP 183
Query: 366 TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHV 425
IA+Y FTTL+PNLG V D + V ADLPGL+EGAHQG GLGH+FLRH ER +VHV
Sbjct: 184 KIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHV 243
Query: 426 IDGS---AEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR 482
ID S P ++ + EL ++ + E+P I+ NK D PEA E +FKEKL
Sbjct: 244 IDXSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKXDXPEAAENLEAFKEKL-TD 302
Query: 483 GIEPFCMSAVKREGTHEVISAAYQLLQKNKE 513
F +SAV REG E++ L+ E
Sbjct: 303 DYPVFPISAVTREGLRELLFEVANQLENTPE 333
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 184/322 (57%), Gaps = 3/322 (0%)
Query: 190 IFVKAGTGGNGVVAFRREKYVPMXXXXXXXXXXXXNVYVEVDESMNSLLPFRNSVHFRAG 249
I V AG GG+G V+FRREK+VP +VY+ S++SL ++A
Sbjct: 8 ITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRLSKRT-YKAE 66
Query: 250 RGSHGQGRMQSGAKGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPXXXXXXXNA 309
G HG+G Q G G+D+V++V GT + +A ++L +L GQ L+ N
Sbjct: 67 DGEHGRGSQQHGRGGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNM 126
Query: 310 SFKSGTNKVPRIAENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPTIAN 369
F S T + PR AE GEEG + L LEL L+ADVG+VG PNAGKS+LL+ ++ A P IA
Sbjct: 127 HFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAP 186
Query: 370 YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGS 429
YPFTTL PNLGVV + +AD+PG++EGA +G GLG EFLRH R L++V+D +
Sbjct: 187 YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD-A 245
Query: 430 AEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCM 489
A++P + +R E+ + P + +P +VA NK+DL E E + + L G+ +
Sbjct: 246 ADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPV 304
Query: 490 SAVKREGTHEVISAAYQLLQKN 511
SA+ G + A + L++
Sbjct: 305 SALTGAGLPALKEALHALVRST 326
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 29/138 (21%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVV------------------S 383
++G+VG PN GKST S + IANYPFTT+ N+GV +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 384 FDYDSTMVV-----ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAE-----QP 433
++Y + + + D+ GL+ GAH+G GLG++FL SAL+HV+D + + QP
Sbjct: 62 YEYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDATGKTDPEGQP 121
Query: 434 EFEFDAVRLELEMFSPEI 451
D V ++E EI
Sbjct: 122 TDYHDPVE-DIEFLEREI 138
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 20/104 (19%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVV---------- 392
VGIVG PN GKSTL + ++ A ANYPF T+ N+GVV + + +
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 393 ----------ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVI 426
D+ GL++GAH+G GLG++FL H +A+ HV+
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 20/104 (19%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVV---------- 392
VGIVG PN GKSTL + ++ A ANYPF T+ N+GVV + + +
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 393 ----------ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVI 426
D+ GL++GAH+G GLG++FL H +A+ HV+
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVL 107
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 21/132 (15%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVV-----SFDY----------- 386
+GIVG PN GKST +V++ +Q + N+PF T+ PN V FD+
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84
Query: 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVI----DGSAEQPEFEFDAVRL 442
+ + V D+ GL++GAH G GLG+ FL H C + H+ D E D +R
Sbjct: 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIR- 143
Query: 443 ELEMFSPEIAEK 454
++E+ E+ K
Sbjct: 144 DIEIIHEELQLK 155
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Query: 344 GIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD----------------YD 387
GIVG PN GKSTL + ++ A ANYPF T+ PN GVV
Sbjct: 6 GIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILP 65
Query: 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVI 426
+TM D+ GL+ GA +G GLG++FL + A+ HV+
Sbjct: 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVV 104
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
VA VG VG P+ GKSTLLS ++ + A Y FTTL+ GV+ + + + + DLPG++
Sbjct: 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-GAKIQMLDLPGII 130
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVID-----GSAEQPEFEFDAVRLELEMFSPEIAEK 454
+GA G G G + + C+ L ++D + E E + V + L P+I K
Sbjct: 131 DGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIK 190
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 9/177 (5%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ V I G PN GKSTLL ++ A+P IA+YPFTT N+G Y ++ D PGLL
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQII-DTPGLL 225
Query: 400 EG--AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYI 457
+ + + L + ++++ D S E F + E E + P++
Sbjct: 226 DRPISERNEIEKQAILALRYLGNLIIYIFDPS-EHCGFPLEEQIHLFEEVHGEFKDLPFL 284
Query: 458 VAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT----HEVISAAYQLLQK 510
V NK+D+ + E ++ ++ +G+ P +SA+K G E+I L +K
Sbjct: 285 VVINKIDVADE-ENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEK 340
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 80/194 (41%), Gaps = 38/194 (19%)
Query: 343 VGIVGAPNAGKSTLLSVISAA---QPTIANYPFTTLLPNLGVVS-----FDY-------- 386
GIVG PN GKST I+ + P ANYP+ T+ P V+ FD+
Sbjct: 23 TGIVGXPNVGKSTFFRAITKSVLGNP--ANYPYATIDPEEAKVAVPDERFDWLCEAYKPK 80
Query: 387 ---DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVI----DGSAEQPEFEFDA 439
+ + V D+ GL +GA G GLG+ FL H A+ V+ D E + D
Sbjct: 81 SRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDP 140
Query: 440 VRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499
+R +L + E+ K E EK K+ +RG A K E
Sbjct: 141 IR-DLSIIVDELLIKD----------AEFVEKHLEGLRKITSRGANTLEXKAKKEE--QA 187
Query: 500 VISAAYQLLQKNKE 513
+I YQ L + K+
Sbjct: 188 IIEKVYQYLTETKQ 201
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLE 400
++ ++G PN GKST+ + ++ I N+P T+ G F+Y+ V DLPG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEG--EFEYNGEKFKVVDLPGVYS 66
Query: 401 GAHQGFG--LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIV 458
+ +++ + E+ +V+++D +A + +E+ ++
Sbjct: 67 LTANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYLTLQLMEM--------GANLLL 117
Query: 459 AFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKNKEAE 515
A NKMDL ++ + + G++ +SA K+ G E+ A ++ K AE
Sbjct: 118 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAE 174
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 63/131 (48%), Gaps = 26/131 (19%)
Query: 347 GAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQG 405
GAPN GKS+ ++++S A + +Y FTT NL V FD+ + + D PGLL+ A +
Sbjct: 36 GAPNVGKSSFMNIVSRANVDVQSYSFTT--KNLYVGHFDHKLNKYQIIDTPGLLDRAFEN 93
Query: 406 FGLGHEFLRHT---ERCSALVHV------IDGSAEQPEFEFDAVRLELEMF---SPEIAE 453
R+T +AL H+ I +EQ ++ ++ +F +
Sbjct: 94 --------RNTIEMTTITALAHINGVILFIIDISEQCGL---TIKEQINLFYSIKSVFSN 142
Query: 454 KPYIVAFNKMD 464
K ++ FNK+D
Sbjct: 143 KSIVIGFNKID 153
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL- 398
+ ++ ++G PN+GK++L ++I+ + N+P T+ G+V + D + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD--LEIQDLPGIY 60
Query: 399 -LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEK-- 454
+ + ++L ++R ++++V+ DA LE ++ + ++ E
Sbjct: 61 SMSPYSPAEKVARDYLL-SQRADSILNVV-----------DATNLERNLYLTTQLIETGI 108
Query: 455 PYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504
P +A N +D+ + K + + G+ SA+K+ G +V+ A
Sbjct: 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ ++ ++G PN+GK++L ++I+ + N+P T+ G+V + D + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD--LEIQDLPGIY 60
Query: 400 EGAHQG--FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEK-- 454
+ + ++L ++R ++++V+ DA LE ++ + ++ E
Sbjct: 61 SMSPYSPEAKVARDYLL-SQRADSILNVV-----------DATNLERNLYLTTQLIETGI 108
Query: 455 PYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504
P +A N +D+ + K + + G+ SA+K+ G +V+ A
Sbjct: 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ ++ ++G PN+GK++L ++I+ + N+P T+ G+V + D + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD--LEIQDLPGIY 60
Query: 400 EGAHQG--FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEK-- 454
+ + ++L ++R ++++V+ DA LE ++ + ++ E
Sbjct: 61 SMSPYSPEEKVARDYLL-SQRADSILNVV-----------DATNLERNLYLTTQLIETGI 108
Query: 455 PYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504
P +A N +D+ + K + + G+ SA+K+ G +V+ A
Sbjct: 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLE-G 401
V +VG PN GK+T+ + ++ + + N+P T+ G++ + + +V DLPG+
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-EKEFLVVDLPGIYSLT 64
Query: 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461
AH L +V ++D + L LE+F E+ K I+ N
Sbjct: 65 AHSIDELIARNFILDGNADVIVDIVDSTCLMRNL-----FLTLELFEMEV--KNIILVLN 117
Query: 462 KMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500
K DL + K+ + G+ +A K EG E+
Sbjct: 118 KFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEEL 156
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLE 400
++ ++G PN GKST+ + ++ I N+P T+ G F+Y+ V DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEG--EFEYNGEKFKVVDLPGVYS 62
Query: 401 GAHQGFG--LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIV 458
+ +++ + E+ +V+++D +A + +E+ ++
Sbjct: 63 LTANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYLTLQLMEM--------GANLLL 113
Query: 459 AFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500
A NKMDL ++ + + G++ +SA K+ G E+
Sbjct: 114 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLE 400
++ ++G PN GKST+ + ++ I N+P T+ G F+Y+ V DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEG--EFEYNGEKFKVVDLPGVYS 62
Query: 401 GAHQGFG--LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIV 458
+ +++ + E+ +V+++D +A + +E+ ++
Sbjct: 63 LTANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYLTLQLMEM--------GANLLL 113
Query: 459 AFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500
A NKMDL ++ + + G++ +SA K+ G E+
Sbjct: 114 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL 155
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ ++ ++G PN+GK++L ++I+ + N+P ++ G+V + D + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKNKD--LEIQDLPGIY 60
Query: 400 EGAHQG--FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEK-- 454
+ + ++L ++R ++++V+ DA LE ++ + ++ E
Sbjct: 61 SMSPYSPEEKVARDYLL-SQRADSILNVV-----------DATNLERNLYLTTQLIETGI 108
Query: 455 PYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504
P +A N +D+ + K + + G+ SA+K+ G +V+ A
Sbjct: 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 82/170 (48%), Gaps = 19/170 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ ++ ++G PN+GK++L ++I+ + N+P + G+V + D + + DLPG+
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKNKD--LEIQDLPGIY 60
Query: 400 EGAHQG--FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEK-- 454
+ + ++L ++R ++++V+ DA LE ++ + ++ E
Sbjct: 61 SMSPYSPEEKVARDYLL-SQRADSILNVV-----------DATNLERNLYLTTQLIETGI 108
Query: 455 PYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504
P +A N +D+ + K + + G+ SA+K+ G +V+ A
Sbjct: 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Query: 345 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMV-VADLPGLLEGAH 403
++G PN GK+TL + ++ A + N+P T+ G F ++ + DLPG+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTG--EFLLGEHLIEITDLPGVYSLVA 63
Query: 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAE--KPYIVAF 460
G+ + E+ +A VID + DA LE ++ + ++ E KP +VA
Sbjct: 64 NAEGISQD-----EQIAA-QSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVAL 117
Query: 461 NKMDLPE 467
N MD+ E
Sbjct: 118 NMMDIAE 124
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLE 400
++ ++G PN GKST+ + ++ I N+P T+ G F+Y+ V DLPG+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEG--EFEYNGEKFKVVDLPGVYS 63
Query: 401 GAHQGFG--LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIV 458
+ +++ + E+ +V+++D +A + L+L + ++
Sbjct: 64 LTANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYL---TLQLXEXGANL-----LL 114
Query: 459 AFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500
A NK DL ++ + + G++ +SA K+ G E+
Sbjct: 115 ALNKXDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKXGIEEL 156
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 82/170 (48%), Gaps = 19/170 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ ++ ++G P +GK++L ++I+ + N+P T+ G+V + D + + DLPG+
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKNKD--LEIQDLPGIY 60
Query: 400 EGAHQG--FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEK-- 454
+ + ++L ++R ++++V+ DA LE ++ + ++ E
Sbjct: 61 SMSPYSPEEKVARDYLL-SQRADSILNVV-----------DATNLERNLYLTTQLIETGI 108
Query: 455 PYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504
P +A N +D+ + K + + G+ SA+K+ G +V+ A
Sbjct: 109 PVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKA 158
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 340 VADVGIVGAPNAGKSTLL-SVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398
V V IVG PN GKSTLL +++ I+ TT + LGV + ++ ++ D PG+
Sbjct: 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69
Query: 399 LEGAHQGFGLGHEFL----RHTERCSALVHVIDGS-AEQPEFEFDAVRLELEMFSPEIA- 452
E LGH + + E ++ +ID + +P E E++ I
Sbjct: 70 YEPKKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE--------EIYQNFIKP 120
Query: 453 -EKPYIVAFNKMD 464
KP IV NK+D
Sbjct: 121 LNKPVIVVINKID 133
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 340 VADVGIVGAPNAGKSTLL-SVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398
V V IVG PN GKSTLL +++ I+ TT + LGV + ++ ++ D PG+
Sbjct: 9 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 68
Query: 399 LEGAHQGFGLGHEFL----RHTERCSALVHVIDGS-AEQPEFEFDAVRLELEMFSPEIA- 452
E LGH + + E ++ +ID + +P E E++ I
Sbjct: 69 YEPKKSDV-LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE--------EIYQNFIKP 119
Query: 453 -EKPYIVAFNKMD 464
KP IV NK+D
Sbjct: 120 LNKPVIVVINKID 132
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 19/180 (10%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ +GIVG N+GK++L + ++ + FTT+ P + + M+V +P +
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIR 238
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGS------AEQPEFEFDAVRLELEMFSPEIAE 453
Q L + AL+ VID + E + F+ +R ++
Sbjct: 239 GIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILR------EIGVSG 292
Query: 454 KPYIVAFNKMDLP--EAYEKWPSFKEKLQARGIEPFC----MSAVKREGTHEVISAAYQL 507
KP +V NK+D + Y+K EKL P +SA+KR + YQL
Sbjct: 293 KPILVTLNKIDKINGDLYKKL-DLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQL 351
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ +GIVG N+GK++L + ++ + FTT+ P + + M+V D G +
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVGFI 237
Query: 400 EGA-HQGFGLGHEFLRHTERCSALVHVIDGS------AEQPEFEFDAVRLELEMFSPEIA 452
G Q L + AL+ VID + E + F+ +R ++
Sbjct: 238 RGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILR------EIGVS 291
Query: 453 EKPYIVAFNKMDLP--EAYEKWPSFKEKLQARGIEPFC----MSAVKREGTHEVISAAYQ 506
KP +V NK+D + Y+K EKL P +SA+KR + YQ
Sbjct: 292 GKPILVTLNKIDKINGDLYKKL-DLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQ 350
Query: 507 L 507
L
Sbjct: 351 L 351
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 14/175 (8%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ V + G PN GK++L + ++ + +AN+P T+ GV ++ T+ + DLPG
Sbjct: 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPG-- 61
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEI--AEKPY 456
+ LG+ + A +++ G A+ D+V E ++ EI EK
Sbjct: 62 -----TYSLGYS---SIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKV 113
Query: 457 IVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511
I+A +D + E + GI S+V EG E+ + QKN
Sbjct: 114 ILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKN 168
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGV-VSFDYDSTMVVADLPGL--L 399
VG++G PN+GK+TL + ++ A+ + N+ T+ G+ + D+ T+V DLPG L
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLV--DLPGTYSL 63
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK---PY 456
L + H +++ G A+ DA LE ++ + P
Sbjct: 64 TTISSQTSLDEQIACH--------YILSGDADMLINVVDASNLERNLYLTLQLLELGIPC 115
Query: 457 IVAFNKMDLPE 467
+VA N +D+ E
Sbjct: 116 VVALNMLDIAE 126
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA 402
V + G PN GK++L + ++ + +AN+P T+ GV ++ T+ + DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPG----- 61
Query: 403 HQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMF-SPEI--AEKPYIVA 459
+ LG+ + + A +++ G A+ D+V E ++ EI EK I+A
Sbjct: 62 --TYSLGYSSI---DEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILA 116
Query: 460 FNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511
+D + E + GI S+V EG E+ + QKN
Sbjct: 117 MTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQKN 168
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPG 397
V + G PN GK++L + ++ + +AN+P T+ GV ++ T+ + DLPG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPG 61
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 25/174 (14%)
Query: 343 VGIVGAPNAGKSTLLS-VISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401
V IVG PN GKS+L + ++ +A+ P T GVV D ++V D GL G
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLV-DTGGLWSG 62
Query: 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAE------KP 455
+ + R E ++ +DG AE + ++ E+AE KP
Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY------------EVAEYLRRKGKP 110
Query: 456 YIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTHEVISAAYQLL 508
I+ K+D P K + L G +P S+ G E++ A ++ L
Sbjct: 111 VILVATKVDDP----KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 21/181 (11%)
Query: 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+ +GIVG N+GK++L + ++ + FTT+ P + + M+V D +
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-DTVSFI 237
Query: 400 EGA-HQGFGLGHEFLRHTERCSALVHVIDGS------AEQPEFEFDAVRLELEMFSPEIA 452
G Q L + AL+ VID + E + F+ +R ++
Sbjct: 238 RGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILR------EIGVS 291
Query: 453 EKPYIVAFNKMDLP--EAYEKWPSFKEKLQARGIEPFC----MSAVKREGTHEVISAAYQ 506
KP +V NK+D + Y+K EKL P +SA+KR + YQ
Sbjct: 292 GKPILVTLNKIDKINGDLYKKL-DLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQ 350
Query: 507 L 507
L
Sbjct: 351 L 351
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL--LE 400
+G++G PN+GK+TL + ++ ++ + N+ T+ G S D + + DLPG L
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLT 64
Query: 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK---PYI 457
L + H +++ G A+ DA LE ++ + P I
Sbjct: 65 TISSQTSLDEQIACH--------YILSGDADLLINVVDASNLERNLYLTLQLLELGIPCI 116
Query: 458 VAFNKMDLPE 467
VA N +D+ E
Sbjct: 117 VALNXLDIAE 126
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL--LE 400
+G++G PN+GK+TL + ++ ++ + N+ T+ G S D + + DLPG L
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLT 64
Query: 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK---PYI 457
L + H +++ G A+ DA LE ++ + P I
Sbjct: 65 TISSQTSLDEQIACH--------YILSGDADLLINVVDASNLERNLYLTLQLLELGIPCI 116
Query: 458 VAFNKMDLPE 467
VA N +D+ E
Sbjct: 117 VALNMLDIAE 126
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 24/174 (13%)
Query: 345 IVGAPNAGKSTLLS-VISAAQPTIANYPFTTL------LPNLGVVSFDYDSTMVVADLPG 397
IVG PN GKSTLL+ +++ + + + P TT + G++ D+ V ++
Sbjct: 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307
Query: 398 LLEGAHQGFGLGHE-FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPY 456
L+E LG E L+ E+ ++ V+D S+ P E D LE I K Y
Sbjct: 308 LVE------RLGIERTLQEIEKADIVLFVLDASS--PLDEEDRKILE------RIKNKRY 353
Query: 457 IVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQK 510
+V NK+D+ E + K KL +SA+K EG ++ + Y+ Q+
Sbjct: 354 LVVINKVDVVEKINE-EEIKNKLGTDR-HMVKISALKGEGLEKLEESIYRETQE 405
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVS-FDYDSTMVVADLPGL--L 399
+G++G PN+GK+TL + ++ ++ + N+ T+ G S D+ T+V DLPG L
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLV--DLPGTYSL 63
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK---PY 456
L + H +++ G A+ DA LE ++ + P
Sbjct: 64 TTISSQTSLDEQIACH--------YILSGDADLLINVVDASNLERNLYLTLQLLELGIPC 115
Query: 457 IVAFNKMDLPE 467
IVA N +D+ E
Sbjct: 116 IVALNMLDIAE 126
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 345 IVGAPNAGKSTLL-SVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMV-VADLPGLLEGA 402
I G PNAGKSTLL +++ + +++ P TT + F +D TM + D GL E
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTT--RDYIEECFIHDKTMFRLTDTAGLREAG 295
Query: 403 HQGFGLGHEFLRHTERCSA----LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIV 458
+ + HE +R + A +++++D E+ + E +R EL+ P ++
Sbjct: 296 EE---IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIR-ELKAAHP---AAKFLT 348
Query: 459 AFNKMD 464
NK+D
Sbjct: 349 VANKLD 354
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 43/185 (23%)
Query: 345 IVGAPNAGKSTLLSVI-----SAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+G NAGK+TLL ++ + QPT + N+ +FD L
Sbjct: 28 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFD-------------L 74
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELE-MFS-PEIAEKPYI 457
G Q L ++ + +V ++D A PE FD R+EL+ +F+ E+ + P++
Sbjct: 75 GGHIQARRLWKDYF---PEVNGIVFLVD--AADPE-RFDEARVELDALFNIAELKDVPFV 128
Query: 458 VAFNKMDLPEAYEKWPSFKEKL------------QARGIEPFCMSAVKREGTHEVISAAY 505
+ NK+D P A + + L R +E F S V R G E A+
Sbjct: 129 ILGNKIDAPNAVSE-AELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE----AF 183
Query: 506 QLLQK 510
Q L +
Sbjct: 184 QWLSQ 188
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401
++ +VG +GK+T ++VI++ Q ++P +G V L + G
Sbjct: 24 ELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVTIKLWDI--G 75
Query: 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461
F E R+ SA+V+++D +A+Q + E L + P++ P +V N
Sbjct: 76 GQPRFRSMWE--RYCRGVSAIVYMVD-AADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 462 KMDLPEAYEKWPSFKEKLQARGI---EPFCMSAVKREGTHEVISAAYQLLQKNK 512
K DLP A ++ EK+ I E C S +E + I+ + L+Q +K
Sbjct: 133 KRDLPGALDE-KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW-LIQHSK 184
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 343 VGIVGAPNAGKSTLL-SVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401
V IVG PN GKSTLL +++ I+ P TT G+++ + +V D PGL +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKP 68
Query: 402 AHQ-GFGLGHEFLRHTERCSALVHVID-GSAEQPEFEFDAVRLELEMFSPEIAEKPYIVA 459
G + E +A+V V+D PE E A L+ P + + P ++
Sbjct: 69 MDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALK-----PLVGKVPILLV 123
Query: 460 FNKMD 464
NK+D
Sbjct: 124 GNKLD 128
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 345 IVGAPNAGKSTLLSVI-----SAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+G NAGK+TLL ++ + QPT + N+ +FD L
Sbjct: 6 FLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFD-------------L 52
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELE-MFS-PEIAEKPYI 457
G Q L ++ + +V ++D A PE FD R+EL+ +F+ E+ + P++
Sbjct: 53 GGHIQARRLWKDYF---PEVNGIVFLVD--AADPE-RFDEARVELDALFNIAELKDVPFV 106
Query: 458 VAFNKMDLPEAYEKW----------PSFKEKLQA-RGIEPFCMSAVKREGTHEVISAAYQ 506
+ NK+D P A + + ++++ R +E F S V R G E A+Q
Sbjct: 107 ILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLE----AFQ 162
Query: 507 LLQK 510
L +
Sbjct: 163 WLSQ 166
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 16/174 (9%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401
++ +VG +GK+T ++VI++ Q ++P +G V L + G
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFN------EDMIPTVGFNMRKITKGNVTIKLWDI--G 84
Query: 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461
F E R+ SA+V+++D +A+Q + E L + P++ P +V N
Sbjct: 85 GQPRFRSMWE--RYCRGVSAIVYMVD-AADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 141
Query: 462 KMDLPEAYEKWPSFKEKLQARGI---EPFCMSAVKREGTHEVISAAYQLLQKNK 512
K DLP A ++ EK+ I E C S +E + I+ + L+Q +K
Sbjct: 142 KRDLPGALDE-KELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW-LIQHSK 193
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLP------ 396
V IVG PN GKS+LL+ S ++ T LP G +S +VV +P
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQ-----SDRAIVTDLP--GTTRDVVESQLVVGGIPVQVLDT 279
Query: 397 -GLLEGAHQGFGLGHEFLRHTERCSALVHV-IDG-----SAEQPEFEFDAVRLELEMFSP 449
G+ E + Q +G E R + LV + ID + +Q +E
Sbjct: 280 AGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYE------------- 326
Query: 450 EIAEKPYIVAFNKMDLPE 467
++ +P I+ NK+DL E
Sbjct: 327 QVKHRPLILVMNKIDLVE 344
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVA 393
E+EL LV G +GK+T ++VI++ Q + P T+ N+ V+ + T+ +
Sbjct: 22 EMELTLV------GLQYSGKTTFVNVIASGQFSEDMIP--TVGFNMRKVT-KGNVTIKIW 72
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAE 453
D+ G F E R+ +A+V++ID +A++ + E L + P++
Sbjct: 73 DI-----GGQPRFRSMWE--RYCRGVNAIVYMID-AADREKIEASRNELHNLLDKPQLQG 124
Query: 454 KPYIVAFNKMDLPEAYEKWPSFKEKLQARGI---EPFCMSAVKREGTHEVISAAYQLLQK 510
P +V NK DLP A ++ EK+ I E C S +E + I+ + L+Q
Sbjct: 125 IPVLVLGNKRDLPNALDE-KQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQW-LIQH 182
Query: 511 NK 512
+K
Sbjct: 183 SK 184
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 435 FEFDAVRLELEMFSPEIAE----KPYIVAFNKMDLPEA--YEKWPSFKEKLQARGIEPFC 488
+E R+ + +P I + KP I+ NK D +A ++W KE + +GI
Sbjct: 28 YELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQW---KEHFENQGIRSLS 84
Query: 489 MSAVKREGTHEVISAAYQLLQ 509
+++V +G ++++ A+ ++LQ
Sbjct: 85 INSVNGQGLNQIVPASKEILQ 105
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 322 AENGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVIS-------AAQPTIANYPFTT 374
GE + +L +A V IVG PN GKST+++ + AQP I
Sbjct: 81 THKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITK----- 135
Query: 375 LLPNLGVVSFDYDSTMVVADLPGLL 399
G+ F ++ + + D PG+L
Sbjct: 136 -----GIQWFSLENGVKILDTPGIL 155
>pdb|4EXK|A Chain A, A Chimera Protein Containing Mbp Fused To The C-Terminal
Domain Of The Uncharacterized Protein Stm14_2015 From
Salmonella Enterica
Length = 487
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + +A Q + F +DAVR ++ +
Sbjct: 59 DGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYP 111
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 112 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 147
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + +A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|3VD8|A Chain A, Crystal Structure Of Human Aim2 Pyd Domain With Mbp Fusion
Length = 489
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + +A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|4GIZ|A Chain A, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
pdb|4GIZ|B Chain B, Crystal Structure Of Full-length Human Papillomavirus
Oncoprotein E6 In Complex With Lxxll Peptide Of
Ubiquitin Ligase E6ap At 2.55 A Resolution
Length = 382
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + +A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3CSB|A Chain A, Crystal Structure Of Monobody Ysx1MALTOSE BINDING PROTEIN
Fusion Complex
Length = 465
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 53 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 105
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 106 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 161
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398
+ IVG PN GKSTLL+ + + +I + T + + + + D PGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 63
>pdb|3H4Z|A Chain A, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
pdb|3H4Z|B Chain B, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
pdb|3H4Z|C Chain C, Crystal Structure Of An Mbp-Der P 7 Fusion Protein
Length = 568
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + +A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|2OBG|A Chain A, Crystal Structure Of Monobody Mbp-74MALTOSE BINDING
PROTEIN FUSION Complex
Length = 461
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 53 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 105
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 106 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 161
>pdb|3PY7|A Chain A, Crystal Structure Of Full-length Bovine Papillomavirus
Oncoprotein E6 In Complex With Ld1 Motif Of Paxillin At
2.3a Resolution
Length = 523
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + +A Q + F +DAVR
Sbjct: 48 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRY 100
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 101 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 144
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 54 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 106
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 107 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 144
>pdb|1ZIU|A Chain A, Crystal Structure Of Nickel-bound Engineered Maltose
Binding Protein
pdb|1ZJL|A Chain A, Crystal Structure Of Zinc-Bound Engineered Maltose Binding
Protein
pdb|1ZKB|A Chain A, Zinc-Free Engineered Maltose Binding Protein
pdb|1ZMG|A Chain A, Crystal Structure Of Copper-Bound Engineered Maltose
Binding Protein
Length = 370
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 435 FEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSA 491
F +DAVR ++ + IA + +NK LP + W P+ ++L+A+G +
Sbjct: 92 FTWDAVRYNGKLIAYPIAVMALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNL 151
Query: 492 VKREGTHEVISA 503
+ E T +I+A
Sbjct: 152 QEPEFTWPLIAA 163
>pdb|3CSG|A Chain A, Crystal Structure Of Monobody Ys1(Mbp-74)MALTOSE BINDING
Protein Fusion Complex
Length = 461
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 53 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 105
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 106 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 161
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398
+ IVG PN GKSTLL+ + + +I + T + + + + D PGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL 66
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 58/186 (31%)
Query: 345 IVGAPNAGKSTLLSVI--------------SAAQPTIANYPFTTLLPNLGVVSFDYDSTM 390
+G NAGK+TLL ++ ++ + TIA FTT FD
Sbjct: 21 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTT---------FD----- 66
Query: 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPE 450
L G Q + +L + +V ++D + + E L+ M
Sbjct: 67 --------LGGGIQARRVWKNYL---PAINGIVFLVDCADHERLLE-SKEELDSLMTDET 114
Query: 451 IAEKPYIVAFNKMDLPEAYEK-----------------WPSFKEKLQARGIEPFCMSAVK 493
IA P ++ NK+D PEA + S KE L AR +E F S +K
Sbjct: 115 IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE-LNARPLEVFMCSVLK 173
Query: 494 REGTHE 499
R+G E
Sbjct: 174 RQGYGE 179
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLP--NLGVVSFDYDSTMVVADLPGLL 399
DV +VG N GKST ++ I N T+ P L ++ +S + D PG++
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGII 223
Query: 400 EGAHQ 404
HQ
Sbjct: 224 N-HHQ 227
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 326 EEGPEMWLELELKLVADVGIVGAPNAGKSTLL-SVISAAQPTIANYPFTTLLP 377
E+G ++ + E+ V IVG PN GKSTL ++++ + ++ P TT P
Sbjct: 166 EKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDP 218
>pdb|3G7V|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|B Chain B, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|C Chain C, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
pdb|3G7V|D Chain D, Islet Amyloid Polypeptide (Iapp Or Amylin) Fused To
Maltose Binding Protein
Length = 408
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3Q28|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (58-79) Fused
To Maltose Binding Protein (Mbp)
Length = 393
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|1SVX|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 395
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 68 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 120
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 121 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 178
>pdb|3OB4|A Chain A, Mbp-Fusion Protein Of The Major Peanut Allergen Ara H 2
Length = 500
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + +A Q + F +DAVR
Sbjct: 47 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPAAAFQDKLYPFTWDAVRY 99
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 100 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|3IOR|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOR|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C95
pdb|3IOT|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOT|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-B
pdb|3IOU|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOU|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C94
pdb|3IOV|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOV|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99
pdb|3IOW|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IOW|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C99-Hg
pdb|3IO4|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO4|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C90
pdb|3IO6|A Chain A, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|C Chain C, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
pdb|3IO6|B Chain B, Huntingtin Amino-Terminal Region With 17 Gln Residues -
Crystal C92-A
Length = 449
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|2XZ3|A Chain A, Blv Tm Hairpin
Length = 463
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 47 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 99
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 100 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|1MPB|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg)
pdb|1MPC|A Chain A, Maltodextrin-binding Protein (maltose-binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (trp-230-arg)
pdb|1MPD|A Chain A, Maltodextrin-Binding Protein (Maltose-Binding Protein)
Mutant, With Arginine Replacing Tryptophan At Position
230 (Trp-230-Arg), Complexed With Maltose
Length = 370
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1T0K|A Chain A, Joint X-ray And Nmr Refinement Of Yeast L30e-mrna Complex
Length = 381
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|1NMU|A Chain A, Mbp-L30
pdb|1NMU|C Chain C, Mbp-L30
Length = 382
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|4B3N|A Chain A, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
pdb|4B3N|B Chain B, Crystal Structure Of Rhesus Trim5alpha PrySPRY DOMAIN
Length = 602
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 69 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 121
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 122 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 157
>pdb|3RLF|E Chain E, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 380
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3PGF|A Chain A, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 398
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 86 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 138
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 139 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 194
>pdb|3HST|A Chain A, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
pdb|3HST|C Chain C, N-Terminal Rnase H Domain Of Rv2228c From Mycobacterium
Tuberculosis As A Fusion Protein With Maltose Binding
Protein
Length = 387
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3PUZ|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|E Chain E, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
Length = 370
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFGC-------YAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3D4C|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
I)
pdb|3D4G|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|C Chain C, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|D Chain D, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|E Chain E, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|F Chain F, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|G Chain G, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3D4G|H Chain H, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Ii)
pdb|3EF7|A Chain A, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
pdb|3EF7|B Chain B, Zp-N Domain Of Mammalian Sperm Receptor Zp3 (Crystal Form
Iii)
Length = 481
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 144
>pdb|1JVY|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C With
Beta-Mercaptoethanol Mixed Disulfides
Length = 372
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3Q25|A Chain A, Crystal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
pdb|3Q29|C Chain C, Cyrstal Structure Of Human Alpha-Synuclein (1-19) Fused To
Maltose Binding Protein (Mbp)
Length = 390
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
Length = 522
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 48 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 100
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHE 499
++ + IA + + +NK LP + W P+ ++L+A+G + + T
Sbjct: 101 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWP 160
Query: 500 VISA 503
+I+A
Sbjct: 161 LIAA 164
>pdb|3G7W|A Chain A, Islet Amyloid Polypeptide (Iapp Or Amylin) Residues 1 To
22 Fused To Maltose Binding Protein
Length = 393
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|1LAX|A Chain A, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
pdb|1LAX|C Chain C, Crystal Structure Of Male31, A Defective Folding Mutant Of
Maltose-Binding Protein
Length = 370
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1N3W|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1N3X|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3RUM|A Chain A, New Strategy To Analyze Structures Of Glycopeptide
Antibiotic-Target Complexes
pdb|3VFJ|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex With
Its Ligand, Using Mbp As A Ligand Carrier
Length = 378
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|4DXB|A Chain A, 2.29a Structure Of The Engineered Mbp Tem-1 Fusion Protein
Rg13 In Complex With Zinc, P1 Space Group
pdb|4DXB|B Chain B, 2.29a Structure Of The Engineered Mbp Tem-1 Fusion Protein
Rg13 In Complex With Zinc, P1 Space Group
pdb|4DXC|A Chain A, Crystal Structure Of The Engineered Mbp Tem-1 Fusion
Protein Rg13, C2 Space Group
Length = 637
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 53 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 105
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 106 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|2V93|A Chain A, Equillibrium Mixture Of Open And Partially-Closed Species
In The Apo State Of Maltodextrin-Binding Protein By
Paramagnetic Relaxation Enhancement Nmr
Length = 370
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1NL5|A Chain A, Engineered High-affinity Maltose-binding Protein
pdb|1PEB|A Chain A, Ligand-Free High-Affinity Maltose-Binding Protein
Length = 366
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1JVX|A Chain A, Maltodextrin-Binding Protein Variant D207cA301GSP316C
Cross-Linked In Crystal
Length = 372
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|1EZP|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin Using Peptide Orientations From
Dipolar Couplings
pdb|1EZO|A Chain A, Global Fold Of Maltodextrin Binding Protein Complexed With
Beta-Cyclodextrin
pdb|2H25|A Chain A, Solution Structure Of Maltose Binding Protein Complexed
With Beta-Cyclodextrin
pdb|2KLF|A Chain A, Pere Nmr Structure Of Maltodextrin-Binding Protein
Length = 370
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1EZ9|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1EZ9|B Chain B, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P1 Crystal Form
pdb|1JW4|A Chain A, Structure Of Ligand-Free Maltodextrin-Binding Protein
pdb|1JW5|A Chain A, Structure Of Maltose Bound To Open-Form Maltodextrin-
Binding Protein In P1 Crystal
pdb|1LLS|A Chain A, Crystal Structure Of Unliganded Maltose Binding Protein
With Xenon
pdb|2D21|A Chain A, Nmr Structure Of Stereo-Array Isotope Labelled (Sail)
Maltodextrin-Binding Protein (Mbp)
pdb|1ANF|A Chain A, Maltodextrin Binding Protein With Bound Maltose
pdb|1DMB|A Chain A, Refined 1.8 Angstroms Structure Reveals The Mechanism Of
Binding Of A Cyclic Sugar, Beta-Cyclodextrin, To The
Maltodextrin Binding Protein
pdb|1OMP|A Chain A, Crystallographic Evidence Of A Large Ligand-Induced Hinge-
Twist Motion Between The Two Domains Of The
Maltodextrin- Binding Protein Involved In Active
Transport And Chemotaxis
pdb|3MBP|A Chain A, Maltodextrin-Binding Protein With Bound Maltotriose
pdb|4MBP|A Chain A, Maltodextrin Binding Protein With Bound Maltetrose
pdb|2R6G|E Chain E, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 370
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|2VGQ|A Chain A, Crystal Structure Of Human Ips-1 Card
Length = 477
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 70 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 122
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 123 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 178
>pdb|1FQA|A Chain A, Structure Of Maltotetraitol Bound To Open-Form
Maltodextrin Binding Protein In P2(1)crystal Form
pdb|1FQB|A Chain A, Structure Of Maltotriotol Bound To Open-Form Maltodextrin
Binding Protein In P2(1)crystal Form
pdb|1FQC|A Chain A, Crystal Structure Of Maltotriotol Bound To Closed-Form
Maltodextrin Binding Protein
pdb|1FQD|A Chain A, Crystal Structure Of Maltotetraitol Bound To Closed-Form
Maltodextrin Binding Protein
Length = 370
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1YTV|A Chain A, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
pdb|1YTV|B Chain B, Maltose-binding Protein Fusion To A C-terminal Fragment Of
The V1a Vasopressin Receptor
Length = 366
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1MG1|A Chain A, Htlv-1 Gp21 EctodomainMALTOSE-Binding Protein Chimera
Length = 450
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 51 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 103
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 104 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 159
>pdb|3SEV|A Chain A, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|C Chain C, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
pdb|3SEV|E Chain E, Zn-Mediated Trimer Of Maltose-Binding Protein E310hK314H
BY SYNTHETIC Symmetrization
Length = 372
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3Q27|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (32-57) Fused
To Maltose Binding Protein (Mbp)
Length = 397
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 144
>pdb|1MDQ|A Chain A, Refined Structures Of Two Insertion(slash)deletion Mutants
Probe Function Of The Maltodextrin Binding Protein
Length = 371
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 59 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 111
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 112 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 147
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 40/177 (22%)
Query: 345 IVGAPNAGKSTLLSVISAAQ-----PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399
+G NAGK+TLL ++ + PT+ +P + L G+ T DL G +
Sbjct: 27 FLGLDNAGKTTLLHMLKDDRLGQHVPTL--HPTSEELTIAGM-------TFTTFDLGGHI 77
Query: 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVA 459
+ + + + +V ++D + + E L+ M IA P ++
Sbjct: 78 QARRV-------WKNYLPAINGIVFLVDCADHERLLE-SKEELDSLMTDETIANVPILIL 129
Query: 460 FNKMDLPEAYEK-----------------WPSFKEKLQARGIEPFCMSAVKREGTHE 499
NK+D PEA + S KE L AR +E F S +KR+G E
Sbjct: 130 GNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE-LNARPLEVFMCSVLKRQGYGE 185
>pdb|4GLI|A Chain A, Crystal Structure Of Human Smn Yg-Dimer
Length = 401
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 53 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 105
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 106 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 57 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 109
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 110 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 145
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|3Q26|A Chain A, Cyrstal Structure Of Human Alpha-Synuclein (10-42) Fused
To Maltose Binding Protein (Mbp)
Length = 404
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 144
>pdb|3OSR|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
pdb|3OSR|B Chain B, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 311
Length = 653
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 89 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 141
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 142 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 199
>pdb|1MH3|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form I
pdb|1MH4|A Chain A, Maltose Binding-A1 Homeodomain Protein Chimera, Crystal
Form Ii
Length = 421
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 57 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 109
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 110 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 145
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 89 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 141
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 142 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 179
>pdb|3SER|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
pdb|3SER|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein K26hK30H BY
SYNTHETIC Symmetrization
Length = 372
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|1HSJ|A Chain A, Sarr Mbp Fusion Structure
pdb|1HSJ|B Chain B, Sarr Mbp Fusion Structure
Length = 487
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3SES|A Chain A, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SES|C Chain C, Cu-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization
pdb|3SET|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SET|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form I)
pdb|3SEU|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Iii)
pdb|3SEW|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form I)
pdb|3SEX|A Chain A, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEX|C Chain C, Ni-Mediated Dimer Of Maltose-Binding Protein A216hK220H BY
SYNTHETIC Symmetrization (Form Ii)
pdb|3SEY|A Chain A, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|C Chain C, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
pdb|3SEY|E Chain E, Zn-Mediated Polymer Of Maltose-Binding Protein A216hK220H
BY Synthetic Symmetrization (Form Ii)
Length = 372
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 56 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 108
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 109 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 164
>pdb|1A7L|A Chain A, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|B Chain B, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
pdb|1A7L|C Chain C, Dominant B-Cell Epitope From The Pres2 Region Of Hepatitis
B Virus In The Form Of An Inserted Peptide Segment In
Maltodextrin-Binding Protein
Length = 389
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFS 448
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 53 TGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIA 105
Query: 449 PEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 106 YPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3LBS|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LBS|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Bound Form)
pdb|3LC8|A Chain A, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
pdb|3LC8|B Chain B, Crystal Structure Of The Cytoplasmic Tail Of (Pro)renin
Receptor As A Mbp Fusion (Maltose-Free Form)
Length = 384
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ +L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDRELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3MQ9|A Chain A, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|B Chain B, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|C Chain C, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|D Chain D, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|E Chain E, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|F Chain F, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|G Chain G, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
pdb|3MQ9|H Chain H, Crystal Structure Of Ectodomain Mutant Of
Bst-2TETHERINCD317 FUSED To Mbp
Length = 471
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 69 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 121
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 122 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 157
>pdb|2OK2|A Chain A, Muts C-Terminal Domain Fused To Maltose Binding Protein
pdb|2OK2|B Chain B, Muts C-Terminal Domain Fused To Maltose Binding Protein
Length = 402
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMF 447
D P ++ AH FG G+ + L + A Q + F +DAVR ++
Sbjct: 54 ATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLI 106
Query: 448 SPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
+ IA + + +NK LP + W P+ ++L+A+G
Sbjct: 107 AYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 145
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|3PUY|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUV|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|E Chain E, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
Length = 378
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 58/186 (31%)
Query: 345 IVGAPNAGKSTLLSVI--------------SAAQPTIANYPFTTLLPNLGVVSFDYDSTM 390
+G NAGK+TLL ++ ++ + TIA FTT
Sbjct: 30 FLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF--------------- 74
Query: 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPE 450
DL G ++ + + + +V ++D + + E L+ M
Sbjct: 75 ---DLGGHIQARRV-------WKNYLPAINGIVFLVDCADHERLLE-SKEELDSLMTDET 123
Query: 451 IAEKPYIVAFNKMDLPEAYEK-----------------WPSFKEKLQARGIEPFCMSAVK 493
IA P ++ NK+D PEA + S KE L AR +E F S +K
Sbjct: 124 IANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE-LNARPLEVFMCSVLK 182
Query: 494 REGTHE 499
R+G E
Sbjct: 183 RQGYGE 188
>pdb|1Y4C|A Chain A, Designed Helical Protein Fusion Mbp
Length = 494
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 47 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 99
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 100 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|3F5F|A Chain A, Crystal Structure Of Heparan Sulfate 2-O-Sulfotransferase
From Gallus Gallus As A Maltose Binding Protein Fusion
Length = 658
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 55 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 107
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISA 503
IA + + +NK LP + W P+ ++L+A+G + + T +I+A
Sbjct: 108 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAA 163
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 45 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 97
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 98 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 141
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 49 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 101
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 102 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 145
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPE 450
D P ++ AH FG G+ + L + A Q + F +DAVR ++ +
Sbjct: 57 DGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYP 109
Query: 451 IAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
IA + + +NK LP + W P+ ++L+A+G
Sbjct: 110 IAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 145
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 47 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 99
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 100 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 143
>pdb|3A3C|A Chain A, Crystal Structure Of Tim40MIA40 FUSING MBP, C296S AND
C298S Mutant
Length = 451
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRL 442
+ D P ++ AH FG G+ + L + A Q + F +DAVR
Sbjct: 45 FPQVAATGDGPDIIFWAHDRFG-GYA------QSGLLAEITPDKAFQDKLYPFTWDAVRY 97
Query: 443 ELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQARG 483
++ + IA + + +NK LP + W P+ ++L+A+G
Sbjct: 98 NGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKG 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,268,167
Number of Sequences: 62578
Number of extensions: 575808
Number of successful extensions: 1127
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 133
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)