Query 046233
Match_columns 518
No_of_seqs 477 out of 2840
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0536 Obg Predicted GTPase [ 100.0 1.8E-94 3.8E-99 731.0 28.9 331 182-512 1-336 (369)
2 PRK12299 obgE GTPase CgtA; Rev 100.0 4.3E-85 9.3E-90 676.9 33.6 330 183-512 1-331 (335)
3 PRK12297 obgE GTPase CgtA; Rev 100.0 1.1E-83 2.3E-88 683.5 32.0 326 184-512 2-330 (424)
4 PRK12296 obgE GTPase CgtA; Rev 100.0 1.7E-83 3.7E-88 691.0 30.9 331 181-513 1-344 (500)
5 TIGR02729 Obg_CgtA Obg family 100.0 1.4E-82 2.9E-87 657.0 31.8 324 184-508 1-328 (329)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 3.7E-82 7.9E-87 666.8 31.5 330 182-511 1-335 (390)
7 KOG1489 Predicted GTP-binding 100.0 3.9E-74 8.5E-79 576.8 23.9 321 183-507 40-365 (366)
8 PF01018 GTP1_OBG: GTP1/OBG; 100.0 1.4E-48 3.1E-53 363.6 7.8 156 184-339 1-156 (156)
9 cd01898 Obg Obg subfamily. Th 99.9 2.4E-26 5.2E-31 211.0 16.6 168 341-508 1-170 (170)
10 cd01881 Obg_like The Obg-like 99.9 3.6E-23 7.9E-28 190.3 14.1 163 345-507 1-175 (176)
11 cd01897 NOG NOG1 is a nucleola 99.9 1.2E-22 2.6E-27 186.5 16.0 163 341-508 1-167 (168)
12 COG1163 DRG Predicted GTPase [ 99.9 1.1E-22 2.5E-27 206.4 14.8 163 340-511 63-291 (365)
13 PF02421 FeoB_N: Ferrous iron 99.9 7.2E-23 1.6E-27 191.3 9.6 153 342-504 2-156 (156)
14 cd01861 Rab6 Rab6 subfamily. 99.9 2.3E-21 5E-26 176.4 16.2 158 342-508 2-161 (161)
15 TIGR03156 GTP_HflX GTP-binding 99.9 9.6E-22 2.1E-26 205.6 15.6 162 339-507 188-350 (351)
16 cd01865 Rab3 Rab3 subfamily. 99.9 3.6E-21 7.8E-26 177.5 17.6 161 341-510 2-164 (165)
17 TIGR00436 era GTP-binding prot 99.9 9.1E-22 2E-26 198.0 14.7 161 342-510 2-165 (270)
18 PRK11058 GTPase HflX; Provisio 99.9 3.7E-22 8E-27 213.5 12.2 212 291-510 138-363 (426)
19 cd04138 H_N_K_Ras_like H-Ras/N 99.9 3.2E-21 7E-26 174.3 16.4 159 341-508 2-161 (162)
20 cd01868 Rab11_like Rab11-like. 99.9 3.4E-21 7.5E-26 176.6 16.7 159 341-508 4-164 (165)
21 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 5E-21 1.1E-25 183.2 18.4 164 342-512 2-171 (201)
22 cd01878 HflX HflX subfamily. 99.9 2.2E-21 4.9E-26 185.3 15.5 163 338-508 39-204 (204)
23 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 5.2E-21 1.1E-25 175.8 17.3 160 341-509 3-164 (166)
24 cd01866 Rab2 Rab2 subfamily. 99.9 5.6E-21 1.2E-25 177.0 17.5 162 340-510 4-167 (168)
25 cd04119 RJL RJL (RabJ-Like) su 99.9 5.3E-21 1.1E-25 174.0 17.0 161 342-509 2-167 (168)
26 cd04109 Rab28 Rab28 subfamily. 99.9 5.1E-21 1.1E-25 185.6 17.6 163 342-511 2-168 (215)
27 cd01899 Ygr210 Ygr210 subfamil 99.9 1.2E-21 2.6E-26 202.3 13.5 166 343-510 1-270 (318)
28 cd01867 Rab8_Rab10_Rab13_like 99.9 6.5E-21 1.4E-25 176.2 17.1 162 340-510 3-166 (167)
29 cd04122 Rab14 Rab14 subfamily. 99.9 7.4E-21 1.6E-25 175.4 17.2 159 341-509 3-164 (166)
30 cd04136 Rap_like Rap-like subf 99.9 6.7E-21 1.4E-25 173.4 15.8 159 341-508 2-162 (163)
31 cd04120 Rab12 Rab12 subfamily. 99.9 9.8E-21 2.1E-25 183.5 17.6 160 342-510 2-164 (202)
32 smart00175 RAB Rab subfamily o 99.9 1.4E-20 2.9E-25 171.2 17.0 160 342-510 2-163 (164)
33 cd04142 RRP22 RRP22 subfamily. 99.9 1.8E-20 3.9E-25 180.5 17.8 167 342-511 2-176 (198)
34 PRK09602 translation-associate 99.9 2.9E-21 6.2E-26 204.9 13.4 167 341-510 2-272 (396)
35 cd04127 Rab27A Rab27a subfamil 99.9 1.7E-20 3.7E-25 174.6 17.0 162 340-509 4-177 (180)
36 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.8E-20 3.9E-25 170.7 16.4 159 341-508 3-163 (164)
37 cd04144 Ras2 Ras2 subfamily. 99.9 1.1E-20 2.3E-25 179.4 15.3 164 342-513 1-167 (190)
38 smart00173 RAS Ras subfamily o 99.9 1.9E-20 4.2E-25 171.1 16.4 160 342-510 2-163 (164)
39 cd04113 Rab4 Rab4 subfamily. 99.9 1.7E-20 3.8E-25 171.2 16.1 157 342-507 2-160 (161)
40 cd01863 Rab18 Rab18 subfamily. 99.9 2.3E-20 5E-25 170.1 16.8 158 342-507 2-160 (161)
41 cd04140 ARHI_like ARHI subfami 99.9 1.9E-20 4.2E-25 172.6 16.4 159 341-507 2-163 (165)
42 cd04175 Rap1 Rap1 subgroup. T 99.8 1.8E-20 3.9E-25 171.9 15.9 160 341-509 2-163 (164)
43 cd04160 Arfrp1 Arfrp1 subfamil 99.8 9.5E-21 2.1E-25 173.7 14.0 155 342-506 1-166 (167)
44 cd04114 Rab30 Rab30 subfamily. 99.8 2.9E-20 6.4E-25 170.7 17.1 162 338-508 5-168 (169)
45 cd04121 Rab40 Rab40 subfamily. 99.8 2.9E-20 6.4E-25 178.2 17.7 162 339-510 5-168 (189)
46 cd01896 DRG The developmentall 99.8 8.7E-21 1.9E-25 187.5 14.4 162 341-511 1-228 (233)
47 cd01864 Rab19 Rab19 subfamily. 99.8 2.2E-20 4.7E-25 171.8 16.1 159 340-507 3-164 (165)
48 cd04112 Rab26 Rab26 subfamily. 99.8 2.9E-20 6.2E-25 176.6 17.2 161 342-511 2-165 (191)
49 cd04124 RabL2 RabL2 subfamily. 99.8 3.7E-20 8.1E-25 170.6 17.4 158 342-511 2-160 (161)
50 cd04106 Rab23_lke Rab23-like s 99.8 2.8E-20 6.2E-25 169.4 16.2 156 342-507 2-161 (162)
51 cd04123 Rab21 Rab21 subfamily. 99.8 3.8E-20 8.2E-25 167.4 16.9 158 342-508 2-161 (162)
52 cd01879 FeoB Ferrous iron tran 99.8 1.6E-20 3.6E-25 169.7 14.4 155 345-509 1-157 (158)
53 cd04116 Rab9 Rab9 subfamily. 99.8 4.2E-20 9.2E-25 170.4 17.2 161 340-507 5-169 (170)
54 PTZ00258 GTP-binding protein; 99.8 6.9E-21 1.5E-25 200.9 13.5 156 339-494 20-265 (390)
55 COG0012 Predicted GTPase, prob 99.8 6.8E-21 1.5E-25 197.4 13.1 153 341-493 3-248 (372)
56 cd04171 SelB SelB subfamily. 99.8 2.4E-20 5.1E-25 169.3 15.1 153 342-506 2-163 (164)
57 cd00877 Ran Ran (Ras-related n 99.8 5.3E-20 1.2E-24 171.0 17.6 156 342-510 2-160 (166)
58 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3.8E-20 8.2E-25 173.4 16.4 160 341-510 3-165 (172)
59 COG1159 Era GTPase [General fu 99.8 1.1E-20 2.4E-25 190.7 13.6 163 342-511 8-174 (298)
60 cd04157 Arl6 Arl6 subfamily. 99.8 2.1E-20 4.5E-25 170.0 14.2 155 342-506 1-161 (162)
61 cd04101 RabL4 RabL4 (Rab-like4 99.8 4.6E-20 9.9E-25 168.7 16.2 157 342-508 2-163 (164)
62 cd04110 Rab35 Rab35 subfamily. 99.8 6.3E-20 1.4E-24 175.7 17.9 162 340-511 6-169 (199)
63 cd04158 ARD1 ARD1 subfamily. 99.8 3.3E-20 7.1E-25 172.5 15.4 157 342-511 1-163 (169)
64 cd00154 Rab Rab family. Rab G 99.8 5E-20 1.1E-24 164.3 15.8 155 342-505 2-158 (159)
65 PRK15494 era GTPase Era; Provi 99.8 3.4E-20 7.4E-25 193.0 16.9 161 341-510 53-217 (339)
66 cd04117 Rab15 Rab15 subfamily. 99.8 6.2E-20 1.3E-24 169.3 16.7 157 342-507 2-160 (161)
67 COG2262 HflX GTPases [General 99.8 7.7E-21 1.7E-25 198.4 11.7 165 339-511 191-358 (411)
68 cd01860 Rab5_related Rab5-rela 99.8 7.4E-20 1.6E-24 166.8 16.7 159 341-508 2-162 (163)
69 cd04146 RERG_RasL11_like RERG/ 99.8 3.9E-20 8.4E-25 170.1 14.9 161 342-509 1-164 (165)
70 cd04139 RalA_RalB RalA/RalB su 99.8 7.4E-20 1.6E-24 166.1 16.3 160 342-510 2-163 (164)
71 PLN03110 Rab GTPase; Provision 99.8 8.3E-20 1.8E-24 177.8 17.7 163 340-511 12-176 (216)
72 cd04125 RabA_like RabA-like su 99.8 1.1E-19 2.4E-24 171.6 17.8 161 342-511 2-164 (188)
73 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 1.1E-19 2.3E-24 170.0 17.3 162 341-510 1-166 (170)
74 cd04176 Rap2 Rap2 subgroup. T 99.8 6.8E-20 1.5E-24 167.6 15.6 159 341-508 2-162 (163)
75 cd01862 Rab7 Rab7 subfamily. 99.8 1.5E-19 3.2E-24 165.9 17.6 163 342-511 2-169 (172)
76 PTZ00369 Ras-like protein; Pro 99.8 1.1E-19 2.3E-24 172.4 16.8 162 341-511 6-169 (189)
77 cd01894 EngA1 EngA1 subfamily. 99.8 4.1E-20 8.9E-25 166.3 13.2 154 344-508 1-157 (157)
78 KOG0084 GTPase Rab1/YPT1, smal 99.8 7E-20 1.5E-24 174.7 15.3 168 336-512 5-175 (205)
79 cd04150 Arf1_5_like Arf1-Arf5- 99.8 7.5E-20 1.6E-24 168.9 14.5 152 342-506 2-158 (159)
80 cd04111 Rab39 Rab39 subfamily. 99.8 1.6E-19 3.4E-24 175.4 17.5 163 341-511 3-168 (211)
81 KOG0092 GTPase Rab5/YPT51 and 99.8 6.4E-20 1.4E-24 174.4 14.3 161 341-512 6-170 (200)
82 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.1E-19 4.5E-24 166.8 17.3 162 341-509 3-169 (170)
83 cd00876 Ras Ras family. The R 99.8 1.1E-19 2.5E-24 163.9 14.9 157 342-507 1-159 (160)
84 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 9.9E-20 2.1E-24 170.3 14.9 154 340-506 15-173 (174)
85 cd04154 Arl2 Arl2 subfamily. 99.8 9.3E-20 2E-24 169.6 14.5 153 341-506 15-172 (173)
86 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-19 3.5E-24 165.1 15.8 156 341-509 1-166 (168)
87 cd04132 Rho4_like Rho4-like su 99.8 2.3E-19 4.9E-24 168.6 17.2 160 342-512 2-170 (187)
88 cd00879 Sar1 Sar1 subfamily. 99.8 9.9E-20 2.1E-24 171.4 14.6 155 341-508 20-190 (190)
89 PLN03071 GTP-binding nuclear p 99.8 1.9E-19 4.2E-24 175.8 17.0 157 341-510 14-173 (219)
90 cd04156 ARLTS1 ARLTS1 subfamil 99.8 9.2E-20 2E-24 166.0 13.5 153 342-506 1-159 (160)
91 cd04133 Rop_like Rop subfamily 99.8 2.8E-19 6E-24 169.5 16.9 158 341-509 2-173 (176)
92 cd04149 Arf6 Arf6 subfamily. 99.8 1.2E-19 2.7E-24 169.3 14.3 153 341-506 10-167 (168)
93 cd04118 Rab24 Rab24 subfamily. 99.8 5.1E-19 1.1E-23 167.2 18.3 159 342-510 2-167 (193)
94 PLN03108 Rab family protein; P 99.8 3.9E-19 8.4E-24 172.2 17.8 162 340-510 6-169 (210)
95 PLN03118 Rab family protein; P 99.8 4.8E-19 1E-23 171.0 18.2 162 341-511 15-179 (211)
96 PLN00223 ADP-ribosylation fact 99.8 2.2E-19 4.8E-24 170.1 15.5 157 341-510 18-179 (181)
97 PRK09601 GTP-binding protein Y 99.8 6.7E-20 1.4E-24 191.8 13.1 153 341-493 3-241 (364)
98 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.1E-19 6.7E-24 169.4 16.5 160 342-511 2-168 (182)
99 cd01890 LepA LepA subfamily. 99.8 2.6E-19 5.6E-24 166.2 15.6 153 342-509 2-177 (179)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.7E-19 5.8E-24 169.0 16.0 162 341-512 4-173 (183)
101 cd04151 Arl1 Arl1 subfamily. 99.8 1.9E-19 4.2E-24 164.6 14.5 151 342-506 1-157 (158)
102 COG1160 Predicted GTPases [Gen 99.8 8.9E-20 1.9E-24 192.9 13.7 158 341-509 4-165 (444)
103 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.1E-19 6.7E-24 160.2 15.1 152 342-508 3-156 (157)
104 cd01874 Cdc42 Cdc42 subfamily. 99.8 4.4E-19 9.5E-24 166.8 16.7 156 341-507 2-173 (175)
105 smart00174 RHO Rho (Ras homolo 99.8 4.3E-19 9.4E-24 164.0 16.3 155 343-508 1-171 (174)
106 cd04126 Rab20 Rab20 subfamily. 99.8 5.5E-19 1.2E-23 173.6 17.9 156 342-510 2-191 (220)
107 cd04134 Rho3 Rho3 subfamily. 99.8 3.6E-19 7.8E-24 169.0 16.0 159 342-511 2-176 (189)
108 smart00177 ARF ARF-like small 99.8 2.5E-19 5.4E-24 168.1 14.7 156 341-509 14-174 (175)
109 cd00878 Arf_Arl Arf (ADP-ribos 99.8 1.6E-19 3.6E-24 164.3 13.1 152 342-506 1-157 (158)
110 cd01875 RhoG RhoG subfamily. 99.8 4.8E-19 1E-23 168.8 16.6 159 341-510 4-178 (191)
111 cd01895 EngA2 EngA2 subfamily. 99.8 6.1E-19 1.3E-23 160.3 16.4 160 341-507 3-173 (174)
112 cd00157 Rho Rho (Ras homology) 99.8 4.2E-19 9.2E-24 162.8 15.4 154 342-506 2-170 (171)
113 cd01893 Miro1 Miro1 subfamily. 99.8 5.3E-19 1.1E-23 163.5 15.9 155 342-508 2-163 (166)
114 smart00178 SAR Sar1p-like memb 99.8 2.6E-19 5.7E-24 169.4 14.2 155 340-507 17-183 (184)
115 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 5.9E-19 1.3E-23 174.8 17.2 159 341-510 14-189 (232)
116 TIGR03594 GTPase_EngA ribosome 99.8 5E-19 1.1E-23 188.1 17.7 164 341-511 173-346 (429)
117 cd04131 Rnd Rnd subfamily. Th 99.8 6.9E-19 1.5E-23 166.6 16.7 156 341-507 2-174 (178)
118 KOG0078 GTP-binding protein SE 99.8 5.3E-19 1.1E-23 170.4 16.0 163 339-510 11-175 (207)
119 cd01900 YchF YchF subfamily. 99.8 7.2E-20 1.6E-24 185.5 10.5 152 343-494 1-238 (274)
120 cd01871 Rac1_like Rac1-like su 99.8 6E-19 1.3E-23 165.8 15.9 155 342-507 3-173 (174)
121 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 7.9E-19 1.7E-23 167.1 16.4 156 341-507 6-178 (182)
122 cd04159 Arl10_like Arl10-like 99.8 4.1E-19 8.9E-24 158.8 13.6 153 342-506 1-158 (159)
123 cd04137 RheB Rheb (Ras Homolog 99.8 6.5E-19 1.4E-23 164.2 15.5 163 341-512 2-166 (180)
124 cd01892 Miro2 Miro2 subfamily. 99.8 7.7E-19 1.7E-23 163.9 15.9 160 339-509 3-166 (169)
125 cd04148 RGK RGK subfamily. Th 99.8 9.1E-19 2E-23 171.3 16.7 161 342-511 2-165 (221)
126 PRK03003 GTP-binding protein D 99.8 9.7E-19 2.1E-23 189.4 18.3 164 340-512 211-385 (472)
127 PTZ00133 ADP-ribosylation fact 99.8 6.5E-19 1.4E-23 166.8 14.8 157 341-510 18-179 (182)
128 COG1084 Predicted GTPase [Gene 99.8 4.9E-19 1.1E-23 180.5 14.8 160 340-507 168-334 (346)
129 cd04177 RSR1 RSR1 subgroup. R 99.8 1.2E-18 2.6E-23 161.1 16.2 158 342-508 3-163 (168)
130 cd04161 Arl2l1_Arl13_like Arl2 99.8 5.1E-19 1.1E-23 164.6 13.7 152 342-506 1-166 (167)
131 cd04143 Rhes_like Rhes_like su 99.8 1E-18 2.2E-23 174.4 16.6 160 342-509 2-171 (247)
132 cd04135 Tc10 TC10 subfamily. 99.8 2E-18 4.4E-23 159.5 16.9 156 342-508 2-173 (174)
133 PRK04213 GTP-binding protein; 99.8 7.7E-19 1.7E-23 167.3 14.3 162 341-513 10-196 (201)
134 PRK00089 era GTPase Era; Revie 99.8 8.1E-19 1.8E-23 177.7 14.8 162 342-510 7-172 (292)
135 cd04147 Ras_dva Ras-dva subfam 99.8 2.2E-18 4.8E-23 164.8 16.7 159 342-509 1-163 (198)
136 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5E-19 1.1E-23 164.4 11.8 151 342-506 1-163 (164)
137 cd01870 RhoA_like RhoA-like su 99.8 2.7E-18 5.7E-23 158.9 16.6 157 341-508 2-174 (175)
138 PRK05291 trmE tRNA modificatio 99.8 6.9E-19 1.5E-23 189.6 14.6 155 340-510 215-371 (449)
139 smart00176 RAN Ran (Ras-relate 99.8 2.8E-18 6E-23 166.1 16.9 152 346-510 1-155 (200)
140 cd01889 SelB_euk SelB subfamil 99.8 1.3E-18 2.9E-23 165.3 13.9 155 342-509 2-186 (192)
141 cd00880 Era_like Era (E. coli 99.8 3.3E-18 7.1E-23 151.1 14.9 157 345-507 1-162 (163)
142 TIGR02528 EutP ethanolamine ut 99.8 1E-18 2.2E-23 156.9 11.7 139 342-505 2-141 (142)
143 PRK03003 GTP-binding protein D 99.8 1.7E-18 3.7E-23 187.5 15.6 163 337-510 35-200 (472)
144 KOG0394 Ras-related GTPase [Ge 99.8 1.7E-18 3.7E-23 163.7 13.4 166 339-511 8-180 (210)
145 cd01873 RhoBTB RhoBTB subfamil 99.8 3.2E-18 7E-23 164.7 15.7 155 341-507 3-194 (195)
146 cd00881 GTP_translation_factor 99.8 3.3E-18 7.1E-23 158.8 15.2 154 342-509 1-187 (189)
147 PRK00093 GTP-binding protein D 99.8 3.6E-18 7.9E-23 182.1 17.6 164 340-511 173-346 (435)
148 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 3.1E-18 6.7E-23 163.3 14.9 163 341-511 23-187 (221)
149 cd04103 Centaurin_gamma Centau 99.8 3.7E-18 8.1E-23 158.3 15.1 151 342-507 2-157 (158)
150 cd04163 Era Era subfamily. Er 99.8 3.9E-18 8.4E-23 153.2 14.7 161 341-508 4-168 (168)
151 cd04130 Wrch_1 Wrch-1 subfamil 99.8 7.3E-18 1.6E-22 156.9 17.0 154 342-506 2-171 (173)
152 PF00071 Ras: Ras family; Int 99.8 4.5E-18 9.8E-23 155.2 14.8 158 342-509 1-161 (162)
153 PF00025 Arf: ADP-ribosylation 99.8 4.5E-18 9.7E-23 160.5 15.1 156 340-508 14-175 (175)
154 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4E-18 8.7E-23 183.3 16.3 160 338-511 201-362 (442)
155 cd04155 Arl3 Arl3 subfamily. 99.8 4.8E-18 1E-22 156.9 14.3 153 341-506 15-172 (173)
156 PRK00454 engB GTP-binding prot 99.8 7.3E-18 1.6E-22 159.0 15.5 162 339-510 23-195 (196)
157 TIGR00231 small_GTP small GTP- 99.8 1.3E-17 2.9E-22 147.3 16.3 155 341-505 2-160 (161)
158 PRK15467 ethanolamine utilizat 99.8 4E-18 8.6E-23 158.4 13.0 145 342-511 3-149 (158)
159 PRK09518 bifunctional cytidyla 99.8 1.1E-17 2.4E-22 189.5 17.9 162 340-511 450-623 (712)
160 TIGR03594 GTPase_EngA ribosome 99.8 7.4E-18 1.6E-22 179.1 15.3 158 342-510 1-161 (429)
161 COG1160 Predicted GTPases [Gen 99.8 1.1E-17 2.5E-22 176.9 16.3 166 340-512 178-354 (444)
162 COG0486 ThdF Predicted GTPase 99.8 5.6E-18 1.2E-22 179.7 13.5 161 339-511 216-378 (454)
163 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.9E-17 4E-22 163.1 16.1 157 341-508 2-175 (222)
164 TIGR03598 GTPase_YsxC ribosome 99.8 7.5E-18 1.6E-22 158.5 12.8 149 340-498 18-179 (179)
165 KOG0087 GTPase Rab11/YPT3, sma 99.8 1.4E-17 3E-22 160.6 14.7 166 336-510 10-177 (222)
166 PRK00093 GTP-binding protein D 99.8 1.1E-17 2.5E-22 178.3 15.7 157 341-508 2-161 (435)
167 KOG0080 GTPase Rab18, small G 99.7 1.5E-17 3.2E-22 154.4 13.6 162 340-511 11-176 (209)
168 cd01891 TypA_BipA TypA (tyrosi 99.7 1.9E-17 4.1E-22 157.7 14.8 147 340-500 2-173 (194)
169 KOG0098 GTPase Rab2, small G p 99.7 1.9E-17 4.1E-22 157.0 14.2 161 340-511 6-170 (216)
170 PF00009 GTP_EFTU: Elongation 99.7 1.4E-17 3E-22 158.2 13.2 158 339-509 2-187 (188)
171 cd04129 Rho2 Rho2 subfamily. 99.7 3.9E-17 8.4E-22 154.7 15.9 161 341-512 2-176 (187)
172 PRK09554 feoB ferrous iron tra 99.7 3.4E-17 7.4E-22 186.3 16.7 159 341-509 4-168 (772)
173 COG0370 FeoB Fe2+ transport sy 99.7 2.3E-17 5E-22 181.4 14.1 160 342-511 5-166 (653)
174 PRK09518 bifunctional cytidyla 99.7 5.2E-17 1.1E-21 184.0 16.2 163 338-510 273-437 (712)
175 KOG0093 GTPase Rab3, small G p 99.7 6E-17 1.3E-21 148.4 13.3 168 337-513 18-187 (193)
176 TIGR00487 IF-2 translation ini 99.7 1.4E-16 3.1E-21 176.6 18.1 153 340-507 87-248 (587)
177 cd00882 Ras_like_GTPase Ras-li 99.7 1.1E-16 2.3E-21 139.1 13.6 153 345-505 1-156 (157)
178 TIGR00437 feoB ferrous iron tr 99.7 6.9E-17 1.5E-21 179.4 15.4 152 347-508 1-154 (591)
179 cd01888 eIF2_gamma eIF2-gamma 99.7 6.8E-17 1.5E-21 155.9 13.0 157 342-510 2-200 (203)
180 KOG1423 Ras-like GTPase ERA [C 99.7 4.2E-17 9.2E-22 164.8 11.9 164 340-509 72-271 (379)
181 KOG1486 GTP-binding protein DR 99.7 1.1E-16 2.4E-21 158.0 14.0 162 341-511 63-290 (364)
182 cd01876 YihA_EngB The YihA (En 99.7 9.9E-17 2.2E-21 144.6 12.5 157 342-508 1-170 (170)
183 KOG0073 GTP-binding ADP-ribosy 99.7 1.3E-16 2.9E-21 148.5 13.2 158 341-510 17-179 (185)
184 KOG0079 GTP-binding protein H- 99.7 9.7E-17 2.1E-21 147.2 11.4 162 340-512 8-172 (198)
185 PTZ00132 GTP-binding nuclear p 99.7 6.1E-16 1.3E-20 149.6 17.5 157 341-510 10-169 (215)
186 KOG0095 GTPase Rab30, small G 99.7 1.5E-16 3.2E-21 146.2 12.2 164 337-509 4-169 (213)
187 KOG1491 Predicted GTP-binding 99.7 1.1E-16 2.3E-21 163.8 11.6 105 341-445 21-151 (391)
188 PRK05306 infB translation init 99.7 5.5E-16 1.2E-20 176.2 18.0 153 339-507 289-450 (787)
189 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.9E-16 4.1E-21 153.4 12.3 147 342-501 1-186 (208)
190 KOG0088 GTPase Rab21, small G 99.7 7.8E-17 1.7E-21 149.3 9.0 166 341-517 14-183 (218)
191 CHL00189 infB translation init 99.7 3.6E-16 7.8E-21 176.5 15.8 156 338-508 242-409 (742)
192 TIGR00475 selB selenocysteine- 99.7 4.4E-16 9.5E-21 172.8 16.0 157 342-512 2-169 (581)
193 TIGR01393 lepA GTP-binding pro 99.7 3.3E-16 7.2E-21 174.1 15.0 160 339-511 2-182 (595)
194 COG0218 Predicted GTPase [Gene 99.7 6.1E-16 1.3E-20 149.1 14.1 162 339-510 23-198 (200)
195 PF01926 MMR_HSR1: 50S ribosom 99.7 1.8E-16 3.9E-21 138.7 9.1 113 342-462 1-116 (116)
196 KOG0091 GTPase Rab39, small G 99.7 8E-16 1.7E-20 143.3 12.0 164 341-511 9-175 (213)
197 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.1E-15 2.3E-20 147.7 13.3 143 341-497 3-171 (195)
198 KOG0070 GTP-binding ADP-ribosy 99.7 7.2E-16 1.6E-20 146.1 11.8 157 341-511 18-180 (181)
199 PRK12317 elongation factor 1-a 99.6 1.4E-15 3E-20 162.6 14.1 149 340-501 6-197 (425)
200 KOG0086 GTPase Rab4, small G p 99.6 1.9E-15 4.2E-20 139.4 12.1 162 339-509 8-171 (214)
201 TIGR00491 aIF-2 translation in 99.6 4.2E-15 9.2E-20 164.8 17.1 156 341-509 5-216 (590)
202 PRK05433 GTP-binding protein L 99.6 2.8E-15 6E-20 166.9 15.0 159 338-511 5-186 (600)
203 PRK10512 selenocysteinyl-tRNA- 99.6 5.2E-15 1.1E-19 165.1 15.8 156 342-510 2-167 (614)
204 TIGR00092 GTP-binding protein 99.6 1.4E-15 3.1E-20 159.4 9.9 106 341-446 3-135 (368)
205 KOG0395 Ras-related GTPase [Ge 99.6 9.5E-15 2.1E-19 141.4 14.8 161 341-510 4-166 (196)
206 cd01883 EF1_alpha Eukaryotic e 99.6 4.2E-15 9E-20 145.2 11.8 144 342-498 1-194 (219)
207 cd04102 RabL3 RabL3 (Rab-like3 99.6 3E-14 6.5E-19 138.4 16.9 146 342-494 2-175 (202)
208 PRK10218 GTP-binding protein; 99.6 1.4E-14 3E-19 161.2 16.4 160 338-511 3-197 (607)
209 TIGR01394 TypA_BipA GTP-bindin 99.6 9.3E-15 2E-19 162.5 14.9 157 341-511 2-193 (594)
210 cd04105 SR_beta Signal recogni 99.6 1.4E-14 3E-19 140.2 14.2 155 341-506 1-202 (203)
211 KOG0075 GTP-binding ADP-ribosy 99.6 3E-15 6.5E-20 137.4 8.9 157 340-510 20-183 (186)
212 TIGR00483 EF-1_alpha translati 99.6 1E-14 2.2E-19 156.1 13.6 147 340-499 7-197 (426)
213 TIGR03680 eif2g_arch translati 99.6 7E-15 1.5E-19 156.6 11.9 158 341-510 5-197 (406)
214 PF10662 PduV-EutP: Ethanolami 99.6 1.1E-14 2.4E-19 134.2 11.0 140 341-505 2-142 (143)
215 COG1100 GTPase SAR1 and relate 99.6 5.9E-14 1.3E-18 134.8 16.5 161 341-511 6-187 (219)
216 PRK04000 translation initiatio 99.6 1.3E-14 2.9E-19 154.8 12.5 158 341-510 10-202 (411)
217 KOG1487 GTP-binding protein DR 99.6 1.1E-14 2.3E-19 144.7 10.2 163 340-511 59-283 (358)
218 PRK04004 translation initiatio 99.6 5.2E-14 1.1E-18 156.4 16.6 155 341-508 7-217 (586)
219 KOG1490 GTP-binding protein CR 99.6 5.4E-15 1.2E-19 157.2 8.4 165 341-511 169-343 (620)
220 cd04165 GTPBP1_like GTPBP1-lik 99.6 4.6E-14 1E-18 139.1 14.4 151 342-506 1-220 (224)
221 cd04168 TetM_like Tet(M)-like 99.6 5E-14 1.1E-18 139.9 14.6 112 342-467 1-130 (237)
222 PRK12736 elongation factor Tu; 99.6 2.6E-14 5.7E-19 151.7 13.3 159 338-510 10-202 (394)
223 KOG1191 Mitochondrial GTPase [ 99.5 1.8E-14 4E-19 153.2 11.2 174 337-511 265-452 (531)
224 KOG0081 GTPase Rab27, small G 99.5 7.8E-15 1.7E-19 136.2 7.3 163 340-512 9-184 (219)
225 CHL00071 tufA elongation facto 99.5 3.6E-14 7.9E-19 151.3 13.4 143 340-496 12-180 (409)
226 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.1E-13 2.4E-18 132.4 14.5 166 342-510 2-185 (196)
227 PF08477 Miro: Miro-like prote 99.5 6.1E-15 1.3E-19 128.5 5.2 115 342-464 1-119 (119)
228 KOG0083 GTPase Rab26/Rab37, sm 99.5 5.6E-15 1.2E-19 133.7 4.9 158 345-512 2-163 (192)
229 KOG0071 GTP-binding ADP-ribosy 99.5 7.1E-14 1.5E-18 127.5 11.5 154 341-509 18-178 (180)
230 KOG0076 GTP-binding ADP-ribosy 99.5 9.4E-15 2E-19 137.4 5.8 164 338-511 15-189 (197)
231 PRK12735 elongation factor Tu; 99.5 8.4E-14 1.8E-18 147.9 13.2 158 338-509 10-203 (396)
232 PLN00023 GTP-binding protein; 99.5 1.7E-13 3.8E-18 141.7 14.9 121 341-468 22-166 (334)
233 KOG0097 GTPase Rab14, small G 99.5 1.7E-13 3.6E-18 125.2 12.9 163 338-511 9-175 (215)
234 cd04167 Snu114p Snu114p subfam 99.5 1.1E-13 2.4E-18 134.2 12.5 112 342-466 2-136 (213)
235 TIGR00485 EF-Tu translation el 99.5 7.3E-14 1.6E-18 148.2 12.1 144 338-495 10-179 (394)
236 COG2229 Predicted GTPase [Gene 99.5 4.2E-13 9E-18 127.5 15.8 155 340-507 10-176 (187)
237 PRK00049 elongation factor Tu; 99.5 1.6E-13 3.4E-18 145.9 13.6 158 338-509 10-203 (396)
238 PLN03127 Elongation factor Tu; 99.5 1.9E-13 4.2E-18 147.4 14.3 159 338-510 59-253 (447)
239 cd01886 EF-G Elongation factor 99.5 1.4E-13 3E-18 139.4 12.4 137 342-492 1-158 (270)
240 cd04104 p47_IIGP_like p47 (47- 99.5 6.7E-13 1.5E-17 127.5 15.9 159 341-513 2-188 (197)
241 KOG0410 Predicted GTP binding 99.5 3.6E-14 7.8E-19 144.6 7.1 162 338-510 176-342 (410)
242 PRK09866 hypothetical protein; 99.5 4.2E-13 9E-18 147.9 15.8 112 389-506 231-350 (741)
243 PTZ00099 rab6; Provisional 99.5 2.3E-13 5E-18 129.0 12.1 116 388-512 29-145 (176)
244 TIGR02034 CysN sulfate adenyly 99.5 2E-13 4.3E-18 145.5 12.9 145 342-499 2-187 (406)
245 PRK05506 bifunctional sulfate 99.5 1.5E-13 3.2E-18 154.1 12.3 149 338-499 22-211 (632)
246 PRK05124 cysN sulfate adenylyl 99.5 2E-13 4.4E-18 148.3 12.7 151 338-501 25-217 (474)
247 COG3596 Predicted GTPase [Gene 99.5 1.3E-13 2.9E-18 138.3 9.8 167 340-511 39-224 (296)
248 PLN03126 Elongation factor Tu; 99.5 6.1E-13 1.3E-17 144.6 14.7 145 338-496 79-249 (478)
249 cd01885 EF2 EF2 (for archaea a 99.5 1.3E-12 2.7E-17 129.0 14.9 112 342-466 2-138 (222)
250 cd04170 EF-G_bact Elongation f 99.5 3.2E-13 7E-18 135.7 10.9 113 342-468 1-131 (268)
251 TIGR00484 EF-G translation elo 99.4 7.1E-13 1.5E-17 150.0 14.9 116 338-467 8-141 (689)
252 COG0532 InfB Translation initi 99.4 1.8E-12 3.9E-17 139.8 16.9 155 341-510 6-171 (509)
253 PRK00741 prfC peptide chain re 99.4 1.1E-12 2.3E-17 144.3 14.0 119 335-467 5-145 (526)
254 KOG0462 Elongation factor-type 99.4 1.3E-12 2.7E-17 140.6 13.7 161 338-511 58-237 (650)
255 PRK12739 elongation factor G; 99.4 1.1E-12 2.4E-17 148.5 13.1 116 338-467 6-139 (691)
256 PRK13351 elongation factor G; 99.4 1.9E-12 4.2E-17 146.4 14.0 116 339-468 7-140 (687)
257 cd04169 RF3 RF3 subfamily. Pe 99.4 4.3E-12 9.4E-17 128.3 15.1 115 340-468 2-138 (267)
258 PTZ00141 elongation factor 1- 99.4 2E-12 4.4E-17 139.5 13.5 146 340-499 7-203 (446)
259 PTZ00327 eukaryotic translatio 99.4 1.1E-12 2.4E-17 141.9 11.2 159 341-511 35-235 (460)
260 KOG1145 Mitochondrial translat 99.4 5.4E-12 1.2E-16 135.8 16.0 156 339-509 152-316 (683)
261 PRK00007 elongation factor G; 99.4 2.4E-12 5.1E-17 145.9 13.8 116 338-467 8-141 (693)
262 TIGR00503 prfC peptide chain r 99.4 6.4E-12 1.4E-16 138.2 15.3 119 334-466 5-145 (527)
263 KOG0072 GTP-binding ADP-ribosy 99.4 1.2E-12 2.7E-17 119.9 7.1 157 342-511 20-181 (182)
264 KOG0074 GTP-binding ADP-ribosy 99.4 1.5E-12 3.2E-17 119.1 7.6 156 342-509 19-179 (185)
265 PRK13768 GTPase; Provisional 99.4 3E-12 6.6E-17 128.4 10.5 119 389-510 98-248 (253)
266 KOG0090 Signal recognition par 99.4 4.7E-12 1E-16 122.9 11.2 155 341-508 39-238 (238)
267 KOG3883 Ras family small GTPas 99.3 1.8E-11 3.9E-16 113.4 14.1 166 339-511 8-177 (198)
268 PF09439 SRPRB: Signal recogni 99.3 1.8E-12 4E-17 124.1 7.4 119 341-469 4-128 (181)
269 PLN00043 elongation factor 1-a 99.3 7E-12 1.5E-16 135.4 12.8 147 340-499 7-203 (447)
270 COG0481 LepA Membrane GTPase L 99.3 8.4E-12 1.8E-16 132.6 11.5 161 337-512 6-189 (603)
271 KOG0393 Ras-related small GTPa 99.3 9E-12 1.9E-16 120.5 10.3 159 341-510 5-180 (198)
272 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 1.3E-11 2.8E-16 122.6 11.1 164 342-508 1-175 (232)
273 PRK12740 elongation factor G; 99.3 1.9E-11 4.1E-16 137.9 13.5 108 346-467 1-126 (668)
274 KOG4252 GTP-binding protein [S 99.3 1.4E-12 3E-17 123.4 3.6 165 338-512 18-184 (246)
275 COG5256 TEF1 Translation elong 99.3 2.1E-11 4.6E-16 128.2 12.0 147 341-500 8-202 (428)
276 KOG0077 Vesicle coat complex C 99.3 4.4E-12 9.5E-17 118.8 5.8 158 338-508 18-192 (193)
277 cd01850 CDC_Septin CDC/Septin. 99.2 1.1E-10 2.4E-15 118.7 14.1 144 341-491 5-184 (276)
278 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.2E-10 2.7E-15 114.7 12.8 132 342-495 41-182 (225)
279 cd01853 Toc34_like Toc34-like 99.2 1.1E-10 2.4E-15 117.1 11.2 130 337-468 28-164 (249)
280 KOG1532 GTPase XAB1, interacts 99.2 2.1E-10 4.5E-15 115.3 12.9 120 389-512 117-267 (366)
281 PRK14845 translation initiatio 99.2 4.3E-10 9.4E-15 131.3 15.6 146 351-509 472-673 (1049)
282 PF04548 AIG1: AIG1 family; I 99.1 4.1E-10 8.8E-15 109.9 11.8 167 342-511 2-188 (212)
283 COG2895 CysN GTPases - Sulfate 99.1 2.3E-10 4.9E-15 118.3 10.1 149 338-499 4-193 (431)
284 PF03029 ATP_bind_1: Conserved 99.1 6E-11 1.3E-15 118.3 5.7 116 389-508 92-236 (238)
285 PRK09435 membrane ATPase/prote 99.1 5.3E-10 1.2E-14 116.5 12.7 103 388-510 149-261 (332)
286 COG5257 GCD11 Translation init 99.1 1E-10 2.2E-15 119.6 6.5 163 341-514 11-207 (415)
287 COG1217 TypA Predicted membran 99.1 7.3E-10 1.6E-14 117.8 13.0 160 339-512 4-198 (603)
288 TIGR02836 spore_IV_A stage IV 99.1 2E-09 4.3E-14 114.2 15.9 145 342-493 19-219 (492)
289 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 2.7E-10 5.9E-15 108.9 8.3 160 339-509 9-169 (216)
290 COG4917 EutP Ethanolamine util 99.1 4.8E-10 1E-14 101.0 9.3 141 341-506 2-143 (148)
291 TIGR00750 lao LAO/AO transport 99.1 6.9E-10 1.5E-14 113.9 11.9 103 387-509 126-238 (300)
292 PF00350 Dynamin_N: Dynamin fa 99.1 4.9E-10 1.1E-14 103.5 8.6 67 389-463 102-168 (168)
293 PRK07560 elongation factor EF- 99.1 1.2E-09 2.6E-14 124.7 13.3 118 337-467 17-153 (731)
294 KOG1707 Predicted Ras related/ 99.0 3.7E-10 8.1E-15 122.6 8.5 154 341-508 10-174 (625)
295 TIGR00991 3a0901s02IAP34 GTP-b 99.0 1.4E-09 3E-14 112.2 11.6 125 340-467 38-167 (313)
296 KOG0461 Selenocysteine-specifi 99.0 2.9E-09 6.2E-14 109.8 11.7 160 341-514 8-198 (522)
297 COG3276 SelB Selenocysteine-sp 99.0 3.4E-09 7.4E-14 112.4 12.3 154 343-509 3-162 (447)
298 TIGR00073 hypB hydrogenase acc 99.0 5.4E-09 1.2E-13 101.4 12.6 154 335-508 17-206 (207)
299 TIGR00490 aEF-2 translation el 99.0 1.6E-09 3.4E-14 123.6 10.0 117 338-467 17-152 (720)
300 PLN00116 translation elongatio 99.0 1.8E-09 3.9E-14 125.1 10.2 116 338-466 17-163 (843)
301 KOG0458 Elongation factor 1 al 99.0 4.4E-09 9.5E-14 114.5 12.1 150 339-500 176-373 (603)
302 PTZ00416 elongation factor 2; 98.9 2.8E-09 6.1E-14 123.3 11.1 117 337-466 16-157 (836)
303 KOG4423 GTP-binding protein-li 98.9 2.3E-10 4.9E-15 109.2 1.1 165 340-511 25-196 (229)
304 KOG1144 Translation initiation 98.9 6.1E-09 1.3E-13 115.4 11.9 158 341-511 476-689 (1064)
305 PF03308 ArgK: ArgK protein; 98.9 1.8E-09 3.9E-14 108.4 7.2 151 340-510 29-231 (266)
306 smart00053 DYNc Dynamin, GTPas 98.9 1.4E-08 3.1E-13 101.5 12.1 77 388-469 125-208 (240)
307 PF05049 IIGP: Interferon-indu 98.9 1.1E-08 2.3E-13 108.1 11.7 161 340-514 35-223 (376)
308 KOG1673 Ras GTPases [General f 98.9 9.5E-09 2.1E-13 95.7 8.8 158 341-509 21-186 (205)
309 TIGR00101 ureG urease accessor 98.8 3.3E-08 7.2E-13 96.0 12.6 80 419-508 113-195 (199)
310 COG1703 ArgK Putative periplas 98.8 3.1E-08 6.8E-13 101.0 12.8 150 342-511 53-256 (323)
311 PRK10463 hydrogenase nickel in 98.8 5.5E-09 1.2E-13 107.0 5.6 57 451-507 228-287 (290)
312 COG0480 FusA Translation elong 98.8 5.1E-08 1.1E-12 110.3 13.7 131 337-480 7-157 (697)
313 cd01859 MJ1464 MJ1464. This f 98.8 2.7E-08 5.8E-13 91.6 8.5 94 410-510 3-97 (156)
314 KOG3886 GTP-binding protein [S 98.7 1.1E-08 2.5E-13 100.7 5.5 123 341-470 5-133 (295)
315 TIGR00993 3a0901s04IAP86 chlor 98.7 5.5E-08 1.2E-12 108.3 10.9 126 339-467 117-250 (763)
316 TIGR00157 ribosome small subun 98.7 8.7E-08 1.9E-12 95.9 10.1 87 415-506 33-120 (245)
317 KOG1954 Endocytosis/signaling 98.7 1E-07 2.2E-12 99.3 10.5 123 341-470 59-228 (532)
318 COG0050 TufB GTPases - transla 98.7 9.8E-08 2.1E-12 97.1 10.0 160 338-511 10-203 (394)
319 cd01855 YqeH YqeH. YqeH is an 98.6 8.8E-08 1.9E-12 91.2 8.7 91 411-509 27-125 (190)
320 KOG2486 Predicted GTPase [Gene 98.6 9.1E-08 2E-12 96.7 6.8 159 340-508 136-315 (320)
321 cd01858 NGP_1 NGP-1. Autoanti 98.6 1.7E-07 3.8E-12 86.6 8.2 93 412-509 2-95 (157)
322 COG0378 HypB Ni2+-binding GTPa 98.5 6.6E-07 1.4E-11 86.6 11.3 78 421-508 120-200 (202)
323 COG4108 PrfC Peptide chain rel 98.5 6.6E-07 1.4E-11 95.2 11.6 132 335-480 7-162 (528)
324 PF00735 Septin: Septin; Inte 98.5 3.3E-07 7.2E-12 93.7 9.1 142 341-489 5-181 (281)
325 cd04178 Nucleostemin_like Nucl 98.5 1.5E-07 3.3E-12 89.4 6.2 54 341-398 118-172 (172)
326 cd01849 YlqF_related_GTPase Yl 98.4 9.9E-07 2.1E-11 81.5 9.5 84 420-509 1-85 (155)
327 cd01858 NGP_1 NGP-1. Autoanti 98.4 3E-07 6.4E-12 85.0 5.6 54 341-398 103-157 (157)
328 cd01855 YqeH YqeH. YqeH is an 98.4 2.7E-07 5.8E-12 87.9 5.1 54 341-398 128-190 (190)
329 cd01856 YlqF YlqF. Proteins o 98.4 7.6E-07 1.7E-11 83.7 8.0 91 410-509 11-101 (171)
330 PRK00098 GTPase RsgA; Reviewed 98.4 9.8E-07 2.1E-11 90.8 8.8 85 416-505 78-163 (298)
331 TIGR03596 GTPase_YlqF ribosome 98.4 1E-06 2.2E-11 89.5 8.3 94 410-512 13-106 (276)
332 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 9E-07 1.9E-11 80.6 7.1 82 410-496 3-84 (141)
333 KOG0468 U5 snRNP-specific prot 98.3 1.1E-06 2.4E-11 97.0 7.7 115 339-466 127-262 (971)
334 PRK12289 GTPase RsgA; Reviewed 98.3 2.3E-06 4.9E-11 90.2 9.7 86 415-506 86-172 (352)
335 TIGR03597 GTPase_YqeH ribosome 98.3 1.2E-06 2.7E-11 92.4 7.6 86 341-430 155-249 (360)
336 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.1E-06 2.4E-11 89.8 7.0 57 341-401 122-179 (287)
337 cd01849 YlqF_related_GTPase Yl 98.3 9.8E-07 2.1E-11 81.5 5.9 55 340-398 100-155 (155)
338 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.2E-06 2.5E-11 79.9 6.0 54 342-399 85-139 (141)
339 COG1161 Predicted GTPases [Gen 98.3 8.1E-07 1.8E-11 92.5 5.6 57 341-401 133-190 (322)
340 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.5E-06 3.2E-11 88.8 7.3 102 395-511 7-108 (287)
341 TIGR03596 GTPase_YlqF ribosome 98.3 1.3E-06 2.8E-11 88.8 6.5 57 341-401 119-176 (276)
342 KOG3905 Dynein light intermedi 98.3 8.3E-06 1.8E-10 84.2 11.8 162 340-508 52-289 (473)
343 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.1E-06 9E-11 85.7 9.3 85 416-506 76-161 (287)
344 cd01856 YlqF YlqF. Proteins o 98.2 2.5E-06 5.3E-11 80.2 6.4 54 341-398 116-170 (171)
345 KOG0460 Mitochondrial translat 98.2 8.5E-06 1.8E-10 84.6 10.0 158 340-511 54-247 (449)
346 COG5258 GTPBP1 GTPase [General 98.2 8.5E-06 1.9E-10 85.7 10.0 152 341-505 118-335 (527)
347 KOG0466 Translation initiation 98.2 1.8E-06 3.8E-11 88.4 4.6 114 389-513 126-245 (466)
348 PRK12288 GTPase RsgA; Reviewed 98.2 1E-05 2.3E-10 85.1 10.5 86 416-506 118-205 (347)
349 PF05783 DLIC: Dynein light in 98.1 2.6E-05 5.7E-10 85.1 13.6 161 341-509 26-264 (472)
350 cd03112 CobW_like The function 98.1 4.2E-06 9E-11 78.2 6.2 70 388-465 87-158 (158)
351 COG5192 BMS1 GTP-binding prote 98.1 1E-05 2.2E-10 88.2 8.8 130 342-493 71-210 (1077)
352 COG5019 CDC3 Septin family pro 98.1 4E-05 8.7E-10 80.4 12.8 140 341-487 24-199 (373)
353 cd01851 GBP Guanylate-binding 98.1 8.7E-06 1.9E-10 80.5 7.6 90 340-430 7-103 (224)
354 PRK13796 GTPase YqeH; Provisio 98.0 4.6E-06 9.9E-11 88.3 5.4 55 342-400 162-222 (365)
355 KOG1424 Predicted GTP-binding 98.0 3.4E-06 7.3E-11 91.3 4.1 59 340-402 314-373 (562)
356 TIGR03597 GTPase_YqeH ribosome 98.0 1.8E-05 4E-10 83.6 8.6 84 416-507 61-151 (360)
357 KOG1707 Predicted Ras related/ 98.0 0.00011 2.3E-09 80.9 14.2 157 338-509 423-583 (625)
358 PRK13796 GTPase YqeH; Provisio 98.0 2.7E-05 5.8E-10 82.5 9.4 89 412-508 62-158 (365)
359 smart00010 small_GTPase Small 97.9 4.6E-05 1E-09 65.9 8.9 114 342-498 2-115 (124)
360 KOG1547 Septin CDC10 and relat 97.9 6.1E-05 1.3E-09 75.2 10.4 142 341-489 47-223 (336)
361 KOG2655 Septin family protein 97.9 0.00015 3.2E-09 76.5 13.7 144 341-491 22-199 (366)
362 PRK10416 signal recognition pa 97.9 7.7E-05 1.7E-09 77.8 11.4 149 341-502 115-303 (318)
363 cd01859 MJ1464 MJ1464. This f 97.9 2.3E-05 4.9E-10 72.1 5.9 55 340-398 101-156 (156)
364 KOG0467 Translation elongation 97.9 5.9E-05 1.3E-09 84.8 10.0 112 339-465 8-136 (887)
365 KOG0448 Mitofusin 1 GTPase, in 97.9 0.00011 2.4E-09 82.0 12.1 144 339-492 108-309 (749)
366 TIGR00064 ftsY signal recognit 97.8 0.00014 3.1E-09 74.1 11.5 103 387-502 154-261 (272)
367 PRK01889 GTPase RsgA; Reviewed 97.8 9.3E-05 2E-09 78.2 10.5 83 416-505 110-193 (356)
368 COG0523 Putative GTPases (G3E 97.8 0.00014 3E-09 76.0 11.3 151 341-501 2-193 (323)
369 PRK14974 cell division protein 97.7 0.00019 4.1E-09 75.4 10.9 99 388-503 223-324 (336)
370 PRK12288 GTPase RsgA; Reviewed 97.7 3.5E-05 7.6E-10 81.2 5.4 54 343-400 208-269 (347)
371 KOG1143 Predicted translation 97.7 0.00015 3.2E-09 76.3 9.6 154 341-505 168-384 (591)
372 KOG0465 Mitochondrial elongati 97.7 9.4E-05 2E-09 81.7 7.8 119 337-469 36-172 (721)
373 PRK12289 GTPase RsgA; Reviewed 97.7 4.9E-05 1.1E-09 80.2 5.4 54 343-400 175-236 (352)
374 cd00066 G-alpha G protein alph 97.7 0.00023 5E-09 74.0 10.3 117 387-511 160-313 (317)
375 KOG0447 Dynamin-like GTP bindi 97.6 0.001 2.2E-08 72.8 14.6 89 389-481 413-508 (980)
376 TIGR00157 ribosome small subun 97.6 5.9E-05 1.3E-09 75.6 4.9 54 342-400 122-183 (245)
377 KOG3887 Predicted small GTPase 97.6 0.00021 4.5E-09 71.6 8.5 159 341-507 28-200 (347)
378 smart00275 G_alpha G protein a 97.6 0.00041 8.8E-09 73.0 11.0 117 387-511 183-336 (342)
379 TIGR01425 SRP54_euk signal rec 97.6 0.00041 8.8E-09 75.1 11.0 135 342-490 102-273 (429)
380 KOG0463 GTP-binding protein GP 97.6 0.00043 9.3E-09 72.9 10.6 152 341-504 134-353 (641)
381 KOG1534 Putative transcription 97.6 5.4E-05 1.2E-09 74.4 3.5 77 389-468 99-179 (273)
382 PF03193 DUF258: Protein of un 97.6 5E-05 1.1E-09 71.9 3.1 60 336-400 32-99 (161)
383 KOG0464 Elongation factor G [T 97.5 4.6E-05 9.9E-10 80.8 2.6 128 340-481 37-184 (753)
384 KOG2484 GTPase [General functi 97.5 7.9E-05 1.7E-09 78.9 4.3 64 336-403 248-312 (435)
385 PF02492 cobW: CobW/HypB/UreG, 97.5 4.6E-05 1E-09 72.3 2.4 85 388-482 85-170 (178)
386 cd03114 ArgK-like The function 97.4 0.00093 2E-08 62.0 9.8 57 388-464 92-148 (148)
387 PF00448 SRP54: SRP54-type pro 97.4 0.00048 1E-08 67.0 8.2 98 388-499 84-181 (196)
388 KOG0459 Polypeptide release fa 97.4 0.00011 2.5E-09 77.8 3.9 155 340-502 79-279 (501)
389 KOG2423 Nucleolar GTPase [Gene 97.4 6.8E-05 1.5E-09 79.2 2.1 57 342-402 309-366 (572)
390 TIGR02475 CobW cobalamin biosy 97.4 0.00087 1.9E-08 70.5 10.4 26 338-363 2-27 (341)
391 KOG2485 Conserved ATP/GTP bind 97.4 0.00023 5E-09 73.5 5.5 64 339-403 142-211 (335)
392 PRK11537 putative GTP-binding 97.4 0.00044 9.5E-09 72.1 7.6 133 339-482 3-176 (318)
393 PRK00098 GTPase RsgA; Reviewed 97.4 0.00019 4.1E-09 73.9 4.7 55 342-400 166-228 (298)
394 cd03115 SRP The signal recogni 97.3 0.0019 4E-08 60.5 10.1 90 388-489 83-172 (173)
395 TIGR03348 VI_IcmF type VI secr 97.3 0.00022 4.7E-09 86.0 4.7 127 340-468 111-258 (1169)
396 cd03110 Fer4_NifH_child This p 97.3 0.0031 6.7E-08 59.3 11.4 85 387-488 92-176 (179)
397 PRK11889 flhF flagellar biosyn 97.2 0.0019 4.1E-08 69.4 10.6 143 341-499 242-418 (436)
398 PRK14723 flhF flagellar biosyn 97.2 0.0019 4E-08 74.4 10.8 143 342-497 187-362 (767)
399 PRK14722 flhF flagellar biosyn 97.2 0.0015 3.2E-08 69.6 9.3 147 342-498 139-321 (374)
400 PRK05703 flhF flagellar biosyn 97.2 0.0026 5.7E-08 68.9 11.4 143 342-497 223-396 (424)
401 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.00046 1E-08 70.7 5.3 56 341-400 162-225 (287)
402 KOG1533 Predicted GTPase [Gene 97.2 0.0004 8.7E-09 69.3 4.5 78 389-469 98-179 (290)
403 PRK00771 signal recognition pa 97.1 0.0029 6.3E-08 68.8 10.7 89 389-491 177-267 (437)
404 PRK06995 flhF flagellar biosyn 97.1 0.0036 7.8E-08 68.8 11.4 142 342-500 258-434 (484)
405 PRK12727 flagellar biosynthesi 97.0 0.0037 8.1E-08 69.3 10.9 137 341-497 351-523 (559)
406 COG1162 Predicted GTPases [Gen 97.0 0.00069 1.5E-08 70.0 4.6 55 342-400 166-228 (301)
407 PF06858 NOG1: Nucleolar GTP-b 97.0 0.0013 2.9E-08 51.9 4.8 48 412-464 9-58 (58)
408 PRK12723 flagellar biosynthesi 96.9 0.0078 1.7E-07 64.6 12.1 98 387-497 254-351 (388)
409 PRK14721 flhF flagellar biosyn 96.9 0.0055 1.2E-07 66.3 10.8 136 342-497 193-365 (420)
410 KOG0705 GTPase-activating prot 96.9 0.0031 6.8E-08 69.3 8.8 157 342-513 32-193 (749)
411 PRK12726 flagellar biosynthesi 96.9 0.0059 1.3E-07 65.4 10.6 144 342-499 208-383 (407)
412 KOG1424 Predicted GTP-binding 96.9 0.001 2.3E-08 72.5 4.9 82 405-493 161-244 (562)
413 PRK06731 flhF flagellar biosyn 96.9 0.0082 1.8E-07 61.4 10.9 142 341-498 76-251 (270)
414 cd04178 Nucleostemin_like Nucl 96.8 0.0024 5.2E-08 60.8 6.5 58 420-482 1-58 (172)
415 COG1162 Predicted GTPases [Gen 96.8 0.0049 1.1E-07 63.8 9.1 87 416-506 77-164 (301)
416 PRK12724 flagellar biosynthesi 96.8 0.0072 1.6E-07 65.4 10.7 140 342-497 225-398 (432)
417 COG1419 FlhF Flagellar GTP-bin 96.7 0.01 2.2E-07 63.7 10.8 143 342-498 205-378 (407)
418 KOG0469 Elongation factor 2 [T 96.7 0.0037 8.1E-08 68.1 7.2 118 336-466 15-163 (842)
419 PRK10867 signal recognition pa 96.6 0.0095 2.1E-07 64.8 9.9 90 388-491 184-275 (433)
420 KOG2484 GTPase [General functi 96.6 0.0035 7.5E-08 66.8 5.8 81 408-493 136-216 (435)
421 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.013 2.7E-07 47.9 7.9 72 343-433 2-73 (99)
422 TIGR00959 ffh signal recogniti 96.5 0.016 3.6E-07 62.9 10.7 90 388-491 183-274 (428)
423 PRK13695 putative NTPase; Prov 96.5 0.02 4.3E-07 53.8 9.9 22 342-363 2-23 (174)
424 cd02042 ParA ParA and ParB of 96.4 0.014 3E-07 49.8 7.5 71 343-430 2-73 (104)
425 PF00004 AAA: ATPase family as 96.4 0.005 1.1E-07 53.8 4.8 21 343-363 1-21 (132)
426 KOG3859 Septins (P-loop GTPase 96.3 0.0099 2.1E-07 60.9 7.3 141 340-486 42-212 (406)
427 COG1161 Predicted GTPases [Gen 96.3 0.0084 1.8E-07 62.7 6.9 102 391-507 13-115 (322)
428 COG3523 IcmF Type VI protein s 96.3 0.0071 1.5E-07 72.4 7.0 125 343-468 128-271 (1188)
429 PF09547 Spore_IV_A: Stage IV 96.1 0.096 2.1E-06 56.8 13.5 145 342-493 19-219 (492)
430 KOG2423 Nucleolar GTPase [Gene 96.0 0.015 3.3E-07 62.0 7.0 99 408-511 203-302 (572)
431 COG1120 FepC ABC-type cobalami 95.9 0.024 5.3E-07 57.6 7.5 22 342-363 30-51 (258)
432 cd00009 AAA The AAA+ (ATPases 95.8 0.03 6.6E-07 48.4 7.1 24 341-364 20-43 (151)
433 PF07015 VirC1: VirC1 protein; 95.8 0.029 6.2E-07 56.2 7.6 103 388-502 84-187 (231)
434 cd03111 CpaE_like This protein 95.8 0.037 8.1E-07 48.2 7.4 98 347-462 7-106 (106)
435 PRK01889 GTPase RsgA; Reviewed 95.7 0.0091 2E-07 63.2 3.8 29 336-364 191-219 (356)
436 cd02036 MinD Bacterial cell di 95.7 0.15 3.3E-06 47.0 11.6 65 389-467 64-128 (179)
437 cd02038 FleN-like FleN is a me 95.6 0.024 5.2E-07 51.7 5.9 105 345-466 5-110 (139)
438 KOG0082 G-protein alpha subuni 95.5 0.1 2.3E-06 55.3 10.8 130 376-512 180-347 (354)
439 cd03116 MobB Molybdenum is an 94.9 0.025 5.5E-07 53.3 3.7 48 341-398 2-49 (159)
440 PF00503 G-alpha: G-protein al 94.8 0.035 7.6E-07 59.2 5.0 115 386-508 234-389 (389)
441 COG1618 Predicted nucleotide k 94.5 1.1 2.4E-05 43.0 13.5 26 338-363 3-28 (179)
442 COG4148 ModC ABC-type molybdat 94.5 0.1 2.3E-06 53.9 7.1 40 343-396 27-66 (352)
443 PF13207 AAA_17: AAA domain; P 94.5 0.026 5.6E-07 49.2 2.4 22 342-363 1-22 (121)
444 PRK14737 gmk guanylate kinase; 94.4 0.036 7.7E-07 53.4 3.6 41 342-382 6-47 (186)
445 cd00071 GMPK Guanosine monopho 94.4 0.04 8.6E-07 50.3 3.7 50 343-395 2-53 (137)
446 PF00005 ABC_tran: ABC transpo 94.3 0.021 4.5E-07 50.9 1.6 30 335-364 6-35 (137)
447 COG3640 CooC CO dehydrogenase 94.2 0.26 5.7E-06 49.7 9.2 46 416-466 153-198 (255)
448 PRK10751 molybdopterin-guanine 94.2 0.049 1.1E-06 52.3 3.9 23 341-363 7-29 (173)
449 TIGR03263 guanyl_kin guanylate 94.1 0.047 1E-06 51.1 3.5 40 342-381 3-43 (180)
450 COG1116 TauB ABC-type nitrate/ 94.1 0.034 7.4E-07 56.1 2.6 23 342-364 31-53 (248)
451 PF13671 AAA_33: AAA domain; P 93.9 0.036 7.8E-07 49.5 2.3 21 343-363 2-22 (143)
452 PRK08118 topology modulation p 93.8 0.043 9.4E-07 51.8 2.8 23 341-363 2-24 (167)
453 PHA02530 pseT polynucleotide k 93.8 0.86 1.9E-05 46.3 12.3 33 474-506 194-226 (300)
454 COG1134 TagH ABC-type polysacc 93.8 0.049 1.1E-06 54.9 3.1 31 333-363 46-76 (249)
455 KOG0780 Signal recognition par 93.8 0.1 2.3E-06 55.8 5.6 89 342-433 103-228 (483)
456 COG0541 Ffh Signal recognition 93.7 0.2 4.3E-06 54.4 7.8 24 339-362 99-122 (451)
457 KOG2743 Cobalamin synthesis pr 93.7 0.2 4.4E-06 52.1 7.4 26 338-363 55-80 (391)
458 COG0194 Gmk Guanylate kinase [ 93.7 0.037 8.1E-07 53.7 2.0 41 342-383 6-47 (191)
459 PRK07261 topology modulation p 93.6 0.05 1.1E-06 51.5 2.7 22 342-363 2-23 (171)
460 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.6 0.085 1.8E-06 48.4 4.1 30 335-364 21-50 (144)
461 COG3638 ABC-type phosphate/pho 93.6 0.056 1.2E-06 54.4 3.1 30 333-362 23-52 (258)
462 cd02019 NK Nucleoside/nucleoti 93.4 0.063 1.4E-06 43.2 2.6 21 343-363 2-22 (69)
463 PF13521 AAA_28: AAA domain; P 93.3 0.044 9.6E-07 50.8 1.9 22 342-363 1-22 (163)
464 COG3845 ABC-type uncharacteriz 93.3 0.25 5.4E-06 54.3 7.8 21 343-363 33-53 (501)
465 PF05621 TniB: Bacterial TniB 93.1 0.3 6.5E-06 50.8 7.7 110 339-462 60-189 (302)
466 TIGR02322 phosphon_PhnN phosph 93.1 0.064 1.4E-06 50.3 2.6 22 342-363 3-24 (179)
467 smart00382 AAA ATPases associa 93.1 0.076 1.6E-06 45.3 2.8 23 342-364 4-26 (148)
468 cd03264 ABC_drug_resistance_li 93.0 0.054 1.2E-06 52.3 2.0 30 334-364 20-49 (211)
469 PF03215 Rad17: Rad17 cell cyc 93.0 0.96 2.1E-05 50.5 12.0 21 343-363 48-68 (519)
470 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.0 0.058 1.3E-06 52.2 2.2 30 335-364 25-54 (218)
471 PRK14738 gmk guanylate kinase; 93.0 0.077 1.7E-06 51.6 3.0 36 342-377 15-51 (206)
472 COG1136 SalX ABC-type antimicr 92.9 0.061 1.3E-06 53.8 2.3 30 334-363 25-54 (226)
473 PRK10078 ribose 1,5-bisphospho 92.9 0.07 1.5E-06 50.8 2.7 22 342-363 4-25 (186)
474 cd03225 ABC_cobalt_CbiO_domain 92.9 0.06 1.3E-06 51.8 2.2 29 336-364 23-51 (211)
475 TIGR00960 3a0501s02 Type II (G 92.9 0.06 1.3E-06 52.1 2.2 30 335-364 24-53 (216)
476 PF13555 AAA_29: P-loop contai 92.9 0.085 1.8E-06 42.4 2.6 22 342-363 25-46 (62)
477 cd01130 VirB11-like_ATPase Typ 92.9 0.081 1.8E-06 50.5 3.0 31 333-363 18-48 (186)
478 COG4586 ABC-type uncharacteriz 92.9 0.085 1.8E-06 54.3 3.3 33 331-363 41-73 (325)
479 TIGR03608 L_ocin_972_ABC putat 92.9 0.064 1.4E-06 51.4 2.3 31 334-364 18-48 (206)
480 PF13238 AAA_18: AAA domain; P 92.9 0.069 1.5E-06 46.4 2.3 21 343-363 1-21 (129)
481 cd03261 ABC_Org_Solvent_Resist 92.9 0.061 1.3E-06 52.8 2.2 30 335-364 21-50 (235)
482 COG4604 CeuD ABC-type enteroch 92.8 0.019 4.2E-07 56.5 -1.4 21 343-363 30-50 (252)
483 PF03205 MobB: Molybdopterin g 92.8 0.071 1.5E-06 49.1 2.4 23 341-363 1-23 (140)
484 COG0552 FtsY Signal recognitio 92.8 0.51 1.1E-05 49.7 8.9 98 388-502 222-328 (340)
485 cd03297 ABC_ModC_molybdenum_tr 92.8 0.068 1.5E-06 51.7 2.4 32 332-364 16-47 (214)
486 TIGR02673 FtsE cell division A 92.8 0.067 1.4E-06 51.7 2.3 30 335-364 23-52 (214)
487 cd03226 ABC_cobalt_CbiO_domain 92.8 0.066 1.4E-06 51.5 2.2 30 335-364 21-50 (205)
488 cd03259 ABC_Carb_Solutes_like 92.7 0.069 1.5E-06 51.6 2.3 31 334-364 20-50 (213)
489 cd02023 UMPK Uridine monophosp 92.7 0.077 1.7E-06 50.7 2.6 21 343-363 2-22 (198)
490 cd03224 ABC_TM1139_LivF_branch 92.7 0.069 1.5E-06 51.8 2.3 31 334-364 20-50 (222)
491 PRK00300 gmk guanylate kinase; 92.7 0.09 1.9E-06 50.3 3.1 40 342-381 7-47 (205)
492 TIGR01166 cbiO cobalt transpor 92.7 0.068 1.5E-06 50.8 2.2 29 336-364 14-42 (190)
493 PRK06217 hypothetical protein; 92.6 0.088 1.9E-06 50.0 2.9 23 341-363 2-24 (183)
494 cd03293 ABC_NrtD_SsuB_transpor 92.6 0.073 1.6E-06 51.8 2.3 31 334-364 24-54 (220)
495 COG0563 Adk Adenylate kinase a 92.6 0.084 1.8E-06 50.7 2.7 22 342-363 2-23 (178)
496 KOG2749 mRNA cleavage and poly 92.6 1.5 3.2E-05 46.8 11.9 48 338-385 101-149 (415)
497 cd03218 ABC_YhbG The ABC trans 92.6 0.075 1.6E-06 51.9 2.4 30 335-364 21-50 (232)
498 cd03257 ABC_NikE_OppD_transpor 92.6 0.074 1.6E-06 51.7 2.3 30 335-364 26-55 (228)
499 COG1341 Predicted GTPase or GT 92.6 0.23 5E-06 53.3 6.2 27 337-363 70-96 (398)
500 cd03265 ABC_DrrA DrrA is the A 92.5 0.075 1.6E-06 51.7 2.3 30 335-364 21-50 (220)
No 1
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.8e-94 Score=730.99 Aligned_cols=331 Identities=55% Similarity=0.897 Sum_probs=317.0
Q ss_pred cceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCC
Q 046233 182 MRCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSG 261 (518)
Q Consensus 182 ~~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G 261 (518)
|+|+|+++|+|+||+|||||+|||||||+|+|||||||||+||||||+++.+++||++|++++||+|+||++|++++|+|
T Consensus 1 m~FvD~~~I~v~aG~GGnG~VSFrREK~vp~GGPdGGdGG~GGsV~~~ad~~l~TL~d~r~~~~f~A~~G~~G~~~~~~G 80 (369)
T COG0536 1 MKFVDEVKIEVKAGDGGNGCVSFRREKFVPKGGPDGGDGGRGGSVIFEADENLNTLIDFRYKKHFKAENGENGMGRNRTG 80 (369)
T ss_pred CCcceEEEEEEEecCCCCeeEEEEhhhcCccCCCCCCCCCCCceEEEEEcCCcccHhhhccceEEEccCCCCCCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheece
Q 046233 262 AKGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVA 341 (518)
Q Consensus 262 ~~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia 341 (518)
++|+|++|+||+||+|+|.+|+++|+||+.++|++++|+||+||+||++|++++||+|+++++|++|+++++.||||++|
T Consensus 81 ~~G~Dl~i~VP~GT~v~d~~t~e~i~Dl~~~gq~~~~akGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllA 160 (369)
T COG0536 81 AKGKDLVIKVPVGTVVRDEDTGELLADLTEHGQRFLVAKGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLA 160 (369)
T ss_pred CCCCceEEEcCCCCEEEeCCCCeEehhhccCCcEEEEEcCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+|||+|||||||||+++++++|+|++|||||+.|++|++.+....+|+++|+||+|++||++.+|+++||+||+||.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 99999999999999999999999999999999999999999997678899999999999999999999999999999999
Q ss_pred eEEEEeCCCCC---CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCceEE-EeccCCCC
Q 046233 422 LVHVIDGSAEQ---PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEPFC-MSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~---s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i~~-ISAktgeG 496 (518)
++||||++..+ +.++++.++.||..|++.+.++|.+||+||+|+....+..+.+.+.+... ++..+. |||.+++|
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 99999999744 69999999999999999999999999999999887777777777777654 454333 99999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 046233 497 THEVISAAYQLLQKNK 512 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~ 512 (518)
+++|+..+.+++.+..
T Consensus 321 ~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 321 LDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998765
No 2
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=4.3e-85 Score=676.92 Aligned_cols=330 Identities=52% Similarity=0.886 Sum_probs=310.2
Q ss_pred ceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCC
Q 046233 183 RCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGA 262 (518)
Q Consensus 183 ~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~ 262 (518)
+|+|+++|+|+||+||+||+|||||||+|+|||+|||||+||||||+++++++||++|+++++|+|+||++|++++++|+
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~f~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~ 80 (335)
T PRK12299 1 KFIDEAKIYVKAGDGGNGCVSFRREKFIPFGGPDGGDGGRGGSVILEADENLNTLIDFRYKRHFKAENGENGMGRNRTGK 80 (335)
T ss_pred CceEEEEEEEEecCCCCceeeEehhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCccEEECCCCCCCCCCCCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheecee
Q 046233 263 KGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVAD 342 (518)
Q Consensus 263 ~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia~ 342 (518)
+|+|++|+||+||+|++.+++++|+||..++|++++|+||+||+||.+|++++||+|+++++|++|+++++.||||++|+
T Consensus 81 ~g~d~~~~vp~gt~v~~~~~~~~~~d~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~ad 160 (335)
T PRK12299 81 SGKDLVLKVPVGTQIYDADTGELIADLTEHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLAD 160 (335)
T ss_pred CCCceEEEeCCCCEEEECCCCcEEEEcCCCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCce
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSAL 422 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvl 422 (518)
|+|||+|||||||||++|+++++++++|||||+.|+++++.+.+..++++|||||++++++.+.++++.|++|+++|+++
T Consensus 161 VglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vl 240 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLL 240 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEE
Confidence 99999999999999999999999999999999999999999865678999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH-HHHHHHhcCCceEEEeccCCCCHHHHH
Q 046233 423 VHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS-FKEKLQARGIEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 423 L~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee-l~~~l~~~g~~i~~ISAktgeGI~eL~ 501 (518)
|||||+++.++++++..|..+|..|.+.+.++|++||+||+|+......... +...+...++++++|||++++||++|+
T Consensus 241 I~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~ 320 (335)
T PRK12299 241 LHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELL 320 (335)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 9999999888899999999999988877778999999999999765433322 333334446799999999999999999
Q ss_pred HHHHHHHHhhh
Q 046233 502 SAAYQLLQKNK 512 (518)
Q Consensus 502 ~~L~e~L~~~~ 512 (518)
++|.+++.+.+
T Consensus 321 ~~L~~~l~~~~ 331 (335)
T PRK12299 321 RALWELLEEAR 331 (335)
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 3
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.1e-83 Score=683.52 Aligned_cols=326 Identities=53% Similarity=0.901 Sum_probs=306.3
Q ss_pred eeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCCC
Q 046233 184 CFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGAK 263 (518)
Q Consensus 184 f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~~ 263 (518)
|||+++|+|+||+||+||+|||||||+|+|||||||||+||||||+++++++||++|+++++|+|+||++|++++++|++
T Consensus 2 f~D~~~i~v~aG~GG~G~~sf~rek~~~~ggp~gG~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~g~~~~~~G~~ 81 (424)
T PRK12297 2 FIDQAKIYVKAGDGGDGMVSFRREKYVPKGGPDGGDGGKGGSVIFVADEGLRTLLDFRYKRHFKAENGENGMGKNMHGRN 81 (424)
T ss_pred ceEEEEEEEEecCCCCceeeEEhhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCccEEEcCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheeceee
Q 046233 264 GQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVADV 343 (518)
Q Consensus 264 g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia~V 343 (518)
|+|++|+||+||+|++.+++++|+||..++|++++|+||+||+||++|+++++++|++++.|.+|+++.+.||||++++|
T Consensus 82 g~d~~i~vP~Gt~v~~~~~~~~~~dl~~~~~~~~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adV 161 (424)
T PRK12297 82 GEDLIIKVPVGTVVKDAETGEVIADLVEPGQEVVVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADV 161 (424)
T ss_pred CCeeEEecCCCCEEEECCCCcEEeeeccCCcEEEEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceE
Q 046233 344 GIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALV 423 (518)
Q Consensus 344 ~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL 423 (518)
+|||+|||||||||++|+++++++++|||||+.|+++.+.+.+..+++||||||++++++.+.++++.|++|+++|+++|
T Consensus 162 glVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI 241 (424)
T PRK12297 162 GLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIV 241 (424)
T ss_pred EEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEE
Confidence 99999999999999999999999999999999999999998766799999999999999999999999999999999999
Q ss_pred EEEeCCCC---CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHH
Q 046233 424 HVIDGSAE---QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 424 ~VVDaS~~---~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL 500 (518)
||+|+++. ++.+++..|..+|..|.+.+..+|++||+||+|+....+.++.+ .+..+++++++||++++|+++|
T Consensus 242 ~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l---~~~l~~~i~~iSA~tgeGI~eL 318 (424)
T PRK12297 242 HVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEF---KEKLGPKVFPISALTGQGLDEL 318 (424)
T ss_pred EEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHH---HHHhCCcEEEEeCCCCCCHHHH
Confidence 99999864 78888999999999998877889999999999985433222333 3333478999999999999999
Q ss_pred HHHHHHHHHhhh
Q 046233 501 ISAAYQLLQKNK 512 (518)
Q Consensus 501 ~~~L~e~L~~~~ 512 (518)
+++|.+.+...+
T Consensus 319 ~~~L~~~l~~~~ 330 (424)
T PRK12297 319 LYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHhCc
Confidence 999999887653
No 4
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=1.7e-83 Score=690.97 Aligned_cols=331 Identities=47% Similarity=0.783 Sum_probs=310.4
Q ss_pred ccceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCC
Q 046233 181 VMRCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQS 260 (518)
Q Consensus 181 ~~~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~ 260 (518)
||+|||+++|+|+||+|||||+|||||||+|+|||||||||+||||||+++++++||++|++++||+|+||++|++++++
T Consensus 1 ~~~fvD~~~i~v~aG~GG~G~~sf~rek~~~~ggpdGG~GG~GG~v~~~~~~~~~tl~~~~~~~~~~a~~G~~G~~~~~~ 80 (500)
T PRK12296 1 MPRFVDRVVLHVKAGDGGNGCASVHREKFKPLGGPDGGNGGRGGSVVLVVDPQVTTLLDFHFRPHRKATNGKPGMGDNRD 80 (500)
T ss_pred CCCcEEEEEEEEEecCCCCcceeeehhhcccCCCCCCCCCCCCCEEEEEECCCcCchHHhccCceEECCCCCCCCCCCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheec
Q 046233 261 GAKGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLV 340 (518)
Q Consensus 261 G~~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~i 340 (518)
|++|+|++|+||+||+|++. ++++|+||..++|++++|+||+||+||.+|+++++++|++++.|++|+++.+.||||++
T Consensus 81 G~~g~d~~i~VP~Gt~v~~~-~~~~~~dl~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~ 159 (500)
T PRK12296 81 GAAGEDLVLPVPDGTVVLDE-DGEVLADLVGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSV 159 (500)
T ss_pred CCCCCceEEecCCCcEEEcC-CCcEEeeeccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEeccc
Confidence 99999999999999999984 78999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
++|+|||+||||||||||+|+++++++++|||||+.|+++++.+. +.+|+||||||++++++.++++++.|++|+++|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~-~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG-DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEEC-CeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999987 4789999999999999999999999999999999
Q ss_pred ceEEEEeCCC----CCCHHHHHHHHHHHHhcCC---------CCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceE
Q 046233 421 ALVHVIDGSA----EQPEFEFDAVRLELEMFSP---------EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPF 487 (518)
Q Consensus 421 vlL~VVDaS~----~~s~e~~~~L~~eL~~~~~---------~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~ 487 (518)
++|||||+++ .++..++..+..+|..|.+ .+..+|+|||+||+|++...+..+.+...+...+++++
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVF 318 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEE
Confidence 9999999985 4577888888889988765 45689999999999998665544555556666688999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 488 CMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
+|||+++.||++|+.+|.+++...+.
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999987653
No 5
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=100.00 E-value=1.4e-82 Score=656.96 Aligned_cols=324 Identities=55% Similarity=0.920 Sum_probs=305.4
Q ss_pred eeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCCC
Q 046233 184 CFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGAK 263 (518)
Q Consensus 184 f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~~ 263 (518)
|||+++|+|+||+||+||+|||||||+|+|||||||||+||||||+++++++||++|+++++|+|+||++|++++++|++
T Consensus 1 f~D~~~i~~~~g~gg~g~~~f~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~~ 80 (329)
T TIGR02729 1 FVDEAKIFVKAGDGGNGCVSFRREKYVPKGGPDGGDGGRGGSVILEADENLNTLLDFRYQRHFKAENGENGMGKNRTGKN 80 (329)
T ss_pred CeEEEEEEEEecCCCCceeeEEeeccccCCCCCCCCCCCCCEEEEEECCCcChhhhccCCcEEEcCCCCCCCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheeceee
Q 046233 264 GQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVADV 343 (518)
Q Consensus 264 g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia~V 343 (518)
|+|++|+||+||+|++.+++++|+||..++|++++|+||+||+||++|++++||+|+++++|++|+++.+.||||++|+|
T Consensus 81 g~d~~~~vp~gt~v~~~~~~~~~~~~~~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV 160 (329)
T TIGR02729 81 GEDLVIKVPVGTVVYDADTGELLADLTEPGQRFVVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADV 160 (329)
T ss_pred CCceEEEeCCCCEEEECCCCcEEeEeccCCcEEEecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceE
Q 046233 344 GIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALV 423 (518)
Q Consensus 344 ~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL 423 (518)
+|||+|||||||||++|+++++.+++|||||+.|+++.+.+++..+++||||||++++++.++++++.|++|+++|+++|
T Consensus 161 ~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll 240 (329)
T TIGR02729 161 GLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLL 240 (329)
T ss_pred EEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEE
Confidence 99999999999999999999999999999999999999998755899999999999999998899999999999999999
Q ss_pred EEEeCCCC---CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-hcCCceEEEeccCCCCHHH
Q 046233 424 HVIDGSAE---QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-ARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 424 ~VVDaS~~---~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-~~g~~i~~ISAktgeGI~e 499 (518)
||+|+++. ++++++..|..+|..|.+.+..+|++||+||+|+..... .+.+.+.+. ..+++++++||++++||++
T Consensus 241 ~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~e 319 (329)
T TIGR02729 241 HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDE 319 (329)
T ss_pred EEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHH
Confidence 99999986 788899999999998877777899999999999976533 344444443 3367899999999999999
Q ss_pred HHHHHHHHH
Q 046233 500 VISAAYQLL 508 (518)
Q Consensus 500 L~~~L~e~L 508 (518)
|+++|.+.+
T Consensus 320 L~~~I~~~l 328 (329)
T TIGR02729 320 LLYALAELL 328 (329)
T ss_pred HHHHHHHHh
Confidence 999999876
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=100.00 E-value=3.7e-82 Score=666.81 Aligned_cols=330 Identities=48% Similarity=0.798 Sum_probs=306.3
Q ss_pred cceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCC
Q 046233 182 MRCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSG 261 (518)
Q Consensus 182 ~~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G 261 (518)
|+|||+++|+|+||+||+||+|||||||+|+|||+|||||+||||||+++++++||++|++++||+|+||++|++++++|
T Consensus 1 ~~f~D~~~i~~~~G~GG~g~~~f~r~~~~~~ggp~gg~GG~Gg~v~~~~~~~~~~l~~~~~~~~~~a~~G~~g~~~~~~g 80 (390)
T PRK12298 1 MKFVDEAKIRVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGDVYLEADENLNTLIDYRFERHFRAERGQNGQGRDCTG 80 (390)
T ss_pred CCceEEEEEEEEecCCCCceeeEehhhcccCCCCCCCCCCCCCEEEEEECCCcChhhhhcCCceEEcCCCCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheece
Q 046233 262 AKGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVA 341 (518)
Q Consensus 262 ~~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia 341 (518)
++|+|++|+||+||+|++.+++++|+||..++|++++|+||+||+||++|+++++++|++++.|++|+++++.||||+++
T Consensus 81 ~~g~d~~i~vP~gt~v~~~~~~~~~~d~~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~ia 160 (390)
T PRK12298 81 KRGKDITIKVPVGTRVIDADTGEVIGDLTEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLA 160 (390)
T ss_pred CCCCceEEEcCCCCEEEeCCCCcEEEEeccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+|||+||||||||||+|+++++.+++|||||+.|+++++.+.+..+++++||||++++++.+.+++..|++|+++||+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999987556799999999999999888899999999999999
Q ss_pred eEEEEeCC---CCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC--CceEEEeccCCCC
Q 046233 422 LVHVIDGS---AEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG--IEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS---~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g--~~i~~ISAktgeG 496 (518)
+|||+|++ ..++..++..|..+|..+...+..+|+|||+||+|+....+..+.+....+..+ .+++++||+++.|
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~G 320 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLG 320 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcC
Confidence 99999998 456778888899999988777778999999999999765443333333223323 3789999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
|++|+++|.+.++..
T Consensus 321 IdeLl~~I~~~L~~~ 335 (390)
T PRK12298 321 VKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHHhhhC
Confidence 999999999998754
No 7
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=3.9e-74 Score=576.76 Aligned_cols=321 Identities=40% Similarity=0.697 Sum_probs=301.6
Q ss_pred ceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEc-CCCCccccCCCcceEEcCCCCCCCCCCCCC
Q 046233 183 RCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVD-ESMNSLLPFRNSVHFRAGRGSHGQGRMQSG 261 (518)
Q Consensus 183 ~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~-~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G 261 (518)
.|+|..+|++++|+||+||+||+|+.+.|+||||||+||+||+||+++. ..+++|.+. ...++|++|++|+..+|+|
T Consensus 40 ~fiD~~rv~~kgG~GG~G~ssf~~~~~~~~g~PdGGdGG~GG~V~~~a~~~~~~~l~~~--~s~~~a~~Ge~~~s~~~~g 117 (366)
T KOG1489|consen 40 NFIDKRRVRIKGGSGGSGASSFFRGYRRPRGGPDGGDGGNGGHVYFVAKPGAFKQLSHV--GSLIQAPNGENGKSKMCHG 117 (366)
T ss_pred hhheeeeEEeeccCCCCccchhhhhcccccCCCCCCCCCCCceEEEEeCcccccccccC--CceEEccCCCcCccccccC
Confidence 6999999999999999999999999999999999999999999999999 677777754 3468999999999999999
Q ss_pred CCCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheece
Q 046233 262 AKGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVA 341 (518)
Q Consensus 262 ~~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia 341 (518)
.+|++.+|+||+||+|+|.+.+.++++|..+++++++|+||.||+||.+|.+..++.|.++++|..|+++.+.+|||.+|
T Consensus 118 ~~ak~~~i~VP~Gt~v~d~~~~~~v~el~~~~~~~i~arGG~GG~gn~~fls~~~r~p~~~~~G~~G~e~~~~lELKsia 197 (366)
T KOG1489|consen 118 SNAKHSEIRVPVGTVVKDIEQGKLVAELTKEGDRVIAARGGEGGKGNKFFLSNENRSPKFSKPGLNGEERVIELELKSIA 197 (366)
T ss_pred CCcceEEEecCCccEEeecccchhHHHhccCCcEEEEeecCCCCccceeeccccccCcccccCCCCCceEEEEEEeeeec
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+|||+|||||||||++|++++|++++|+|||+.|++|++.+++..+++++|+||+|++||++++|+++||+|+++|+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 99999999999999999999999999999999999999999999878899999999999999999999999999999999
Q ss_pred eEEEEeCCCC---CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 422 LVHVIDGSAE---QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 422 lL~VVDaS~~---~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
++||+|++.+ .++++++.|+.||+.|...+.++|.+||+||+|+++++.. +.++...++ +..++++||++++|+
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq--~~~V~pvsA~~~egl 355 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ--NPHVVPVSAKSGEGL 355 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC--CCcEEEeeeccccch
Confidence 9999999998 9999999999999999999999999999999999754433 244444443 336999999999999
Q ss_pred HHHHHHHHHH
Q 046233 498 HEVISAAYQL 507 (518)
Q Consensus 498 ~eL~~~L~e~ 507 (518)
.+|+..|.+.
T Consensus 356 ~~ll~~lr~~ 365 (366)
T KOG1489|consen 356 EELLNGLREL 365 (366)
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 8
>PF01018 GTP1_OBG: GTP1/OBG; InterPro: IPR006169 Several proteins have recently been shown to contain the 5 structural motifs characteristic of GTP-binding proteins []. These include murine DRG protein; GTP1 protein from Schizosaccharomyces pombe; OBG protein from Bacillus subtilis; and several others. Although the proteins contain GTP-binding motifs and are similar to each other, they do not share sequence similarity to other GTP-binding proteins, and have thus been classed as a novel group, the GTP1/OBG family. As yet, the functions of these proteins is uncertain, but they have been shown to be important in development and normal cell metabolism [, ].; GO: 0005525 GTP binding; PDB: 1LNZ_A 1UDX_A.
Probab=100.00 E-value=1.4e-48 Score=363.57 Aligned_cols=156 Identities=53% Similarity=0.920 Sum_probs=94.5
Q ss_pred eeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCCC
Q 046233 184 CFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGAK 263 (518)
Q Consensus 184 f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~~ 263 (518)
|||+++|+|+||+|||||+||+|++|+|+|||+||+||+||||||+++++++||+++++.++|+|++|.+|++++++|++
T Consensus 1 FvD~~~i~v~~G~GG~G~~sf~r~~~~~~ggp~GG~GG~GG~V~l~~~~~~~sL~~~~~~~~~~A~~G~~G~~~~~~G~~ 80 (156)
T PF01018_consen 1 FVDRVRIKVRGGNGGNGCVSFRREKYVPKGGPDGGNGGNGGDVYLVADENVNSLLDLKNKKHYKAENGENGKSRNCHGKN 80 (156)
T ss_dssp EECEEEEEEE----------EEEETTCCEEEE----------EEEEE-TT--SSCCCGTSSEEE-------BTTTB----
T ss_pred CeEEEEEEEEecCCcCCEEeEEeeccccCCCCCCCCCCCCceeEEEecccccchhhcceeeeEEcCCCCCCCCCcccccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhhee
Q 046233 264 GQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKL 339 (518)
Q Consensus 264 g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ 339 (518)
|+|++|+||+||+|++.+++++|+||..+++++++|+||+||+||.+|+++++++|+++++|++||++.+.||||+
T Consensus 81 G~dl~i~VP~GT~V~~~~~~~~l~Dl~~~g~~~lvArGG~GG~GN~~f~s~~~~~P~~~~~G~~Ge~~~l~LELK~ 156 (156)
T PF01018_consen 81 GKDLIIKVPVGTVVYDADTGELLADLTEPGQRFLVARGGRGGLGNAHFKSSTNRAPRFATPGEPGEERKLELELKT 156 (156)
T ss_dssp ---EEEEE-TTEEEEETTT--EEEEE-STT-EEEEE--------GGGC-BTTCSS--EEE------EEEEEEEEE-
T ss_pred CCccEeeecCCcEEEeeccccchheeecccceeEEecCCCCccccccccCCCCCCCCccCCCCCceEEEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
No 9
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=2.4e-26 Score=211.01 Aligned_cols=168 Identities=54% Similarity=0.849 Sum_probs=139.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
++|++||.+|||||||+++|++....++.++++|..+..+.+.+.....+.+|||||+.+.......+...|++++..||
T Consensus 1 ~~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 1 ADVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CCeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 57999999999999999999988777788899999999998887744489999999997655444457778888888999
Q ss_pred ceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCceEEEeccCCCCHH
Q 046233 421 ALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEPFCMSAVKREGTH 498 (518)
Q Consensus 421 vlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i~~ISAktgeGI~ 498 (518)
++++|+|+++. ++...+..|..++..+.+.+..+|+++|+||+|+.......+.+...+... ..+++++||+++.|++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 99999999998 788888888888876655456799999999999976555444444455543 6789999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
+++++|.+++
T Consensus 161 ~l~~~i~~~~ 170 (170)
T cd01898 161 ELLRKLAELL 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 10
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=3.6e-23 Score=190.27 Aligned_cols=163 Identities=45% Similarity=0.742 Sum_probs=127.8
Q ss_pred eeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceEE
Q 046233 345 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVH 424 (518)
Q Consensus 345 LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~ 424 (518)
|+|.+|||||||+++|++....++.++++|..++.+.+.+..+..+.+|||||+.+.......+...+++++..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 68999999999999999987767889999999999888776467899999999976555555566677788888999999
Q ss_pred EEeCCCC------CCHHHHHHHHHHHHhcCCC-----CCCCCEEEEEeCCCCCCcccchHH-HHHHHHhcCCceEEEecc
Q 046233 425 VIDGSAE------QPEFEFDAVRLELEMFSPE-----IAEKPYIVAFNKMDLPEAYEKWPS-FKEKLQARGIEPFCMSAV 492 (518)
Q Consensus 425 VVDaS~~------~s~e~~~~L~~eL~~~~~~-----l~~kPiIVVlNKiDL~~~~e~~ee-l~~~l~~~g~~i~~ISAk 492 (518)
|+|+++. .+......+..++...... +..+|+++|+||+|+......... ..........+++++||+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK 160 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence 9999987 4666667676766644322 247999999999999765443222 112222336689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 046233 493 KREGTHEVISAAYQL 507 (518)
Q Consensus 493 tgeGI~eL~~~L~e~ 507 (518)
++.|+++++++|...
T Consensus 161 ~~~gl~~l~~~l~~~ 175 (176)
T cd01881 161 TEEGLDELIRAIYEL 175 (176)
T ss_pred hhcCHHHHHHHHHhh
Confidence 999999999999765
No 11
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=1.2e-22 Score=186.46 Aligned_cols=163 Identities=29% Similarity=0.386 Sum_probs=116.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCC-cchhhhcc-ccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFG-LGHEFLRH-TER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~g-Lg~~fLr~-Ier 418 (518)
++|+++|.+|||||||+++|++..+.+..++++|..+..+.+.+. ...++||||||+.+.....+. +....+.. ...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK-YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC-ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 478999999999999999999988777788999998888877664 578999999998643221110 00011111 123
Q ss_pred cCceEEEEeCCCCCCH--HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCC
Q 046233 419 CSALVHVIDGSAEQPE--FEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~--e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
+|++|+|+|+++.... .....+..+++.. ..+.|+++|+||+|+...... ....+......+++++|||+++.|
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~---~~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPL---FKNKPVIVVLNKIDLLTFEDL-SEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhh---cCcCCeEEEEEccccCchhhH-HHHHHhhhhccCceEEEEecccCC
Confidence 6899999999986542 3333444455422 247899999999999765432 223333343467899999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 497 THEVISAAYQLL 508 (518)
Q Consensus 497 I~eL~~~L~e~L 508 (518)
+++++++|.+.|
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 12
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=206.36 Aligned_cols=163 Identities=31% Similarity=0.488 Sum_probs=135.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+.|+|||+|++||||||++|++.+..+++|+|||+.|..|++.|. +.+++|+|+||++++++.+++.+.+.+..++.|
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~-ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK-GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec-CceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 4689999999999999999999999999999999999999999998 689999999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHh--------------------------------------------cCC------
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEM--------------------------------------------FSP------ 449 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~--------------------------------------------~~~------ 449 (518)
|++++|+|+..... .++.+..+|.. |..
T Consensus 142 DlIiiVld~~~~~~--~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 142 DLIIIVLDVFEDPH--HRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred CEEEEEEecCCChh--HHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 99999999985432 13344444442 110
Q ss_pred ----------------CCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 450 ----------------EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 450 ----------------~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
....+|.++|+||+|+... +.++.+.+.. ..+++||+++.|+++|.+.|++.|...
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~l~~~~-----~~v~isa~~~~nld~L~e~i~~~L~li 291 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELERLARKP-----NSVPISAKKGINLDELKERIWDVLGLI 291 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHHHHhcc-----ceEEEecccCCCHHHHHHHHHHhhCeE
Confidence 2235899999999999873 3333333322 789999999999999999999988654
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.88 E-value=7.2e-23 Score=191.30 Aligned_cols=153 Identities=27% Similarity=0.391 Sum_probs=113.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc--CCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ--GFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~--~~gLg~~fLr~IerA 419 (518)
+|+|+|.||||||||+|+|++.+..+++||++|.+...|.+.+. +..+.++|+||+..-... ...+...++. .+..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~-~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG-DQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET-TEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec-CceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 69999999999999999999999999999999999999999987 489999999998653322 1223344443 3579
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++|+|+|+++. ..++..+ .++.. ..+|+++|+||+|+............+-+..+++++++||++++|+++
T Consensus 80 D~ii~VvDa~~l--~r~l~l~-~ql~e-----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 80 DLIIVVVDATNL--ERNLYLT-LQLLE-----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SEEEEEEEGGGH--HHHHHHH-HHHHH-----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CEEEEECCCCCH--HHHHHHH-HHHHH-----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999873 3334333 33332 469999999999998654433333333444589999999999999999
Q ss_pred HHHHH
Q 046233 500 VISAA 504 (518)
Q Consensus 500 L~~~L 504 (518)
|++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 14
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=2.3e-21 Score=176.44 Aligned_cols=158 Identities=13% Similarity=-0.013 Sum_probs=120.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++........+.++.+.....+.++.. ..+.+|||||+.... ......+..+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR-------SLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 7899999999999999999998777777777777777666666532 468999999975421 12233456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++++|+|++++.++.....+...+..... .+.|+++|+||+|+...... .++........+++++++||+++.|+++
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 152 (161)
T cd01861 75 VAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKE 152 (161)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 99999999998888777776666543221 26899999999999644332 3344444555578999999999999999
Q ss_pred HHHHHHHHH
Q 046233 500 VISAAYQLL 508 (518)
Q Consensus 500 L~~~L~e~L 508 (518)
++.+|.+.+
T Consensus 153 l~~~i~~~l 161 (161)
T cd01861 153 LFRKIASAL 161 (161)
T ss_pred HHHHHHHhC
Confidence 999998753
No 15
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=9.6e-22 Score=205.55 Aligned_cols=162 Identities=26% Similarity=0.348 Sum_probs=123.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC-CCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG-FGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~-~gLg~~fLr~Ie 417 (518)
..++|+|||+||||||||+|+|++....+.+++|+|+++....+.+..+..+.||||||++...... .......+.++.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~ 267 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVR 267 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence 4579999999999999999999998766688999999999999988656799999999986531110 001122344577
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.||++|+|+|++++....++..+...+.... ..++|+++|+||+|+..... +. .+.....++++|||+++.|+
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~--~~~~piIlV~NK~Dl~~~~~----v~-~~~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELG--AEDIPQLLVYNKIDLLDEPR----IE-RLEEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhc--cCCCCEEEEEEeecCCChHh----HH-HHHhCCCCEEEEEccCCCCH
Confidence 8999999999999887777766666666443 24689999999999975322 11 12222346899999999999
Q ss_pred HHHHHHHHHH
Q 046233 498 HEVISAAYQL 507 (518)
Q Consensus 498 ~eL~~~L~e~ 507 (518)
++|+++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 16
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.87 E-value=3.6e-21 Score=177.51 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=115.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++.++.....+..+.+.....+..+. ...+.+|||||+.... ..+..+++.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~~~~~~~~~ 74 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TITTAYYRGA 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHccCC
Confidence 4899999999999999999998775433333222222222222221 2578999999975422 2234456779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|+++..+++.+..|...+..+. ....|++||+||+|+...... .+...+.....+++++++||+++.|++
T Consensus 75 ~~~l~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 152 (165)
T cd01865 75 MGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVK 152 (165)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999998888777777766665443 246899999999999765432 234444445567899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+||++|.+.+..
T Consensus 153 ~l~~~l~~~~~~ 164 (165)
T cd01865 153 QVFERLVDIICD 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 17
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=9.1e-22 Score=197.95 Aligned_cols=161 Identities=21% Similarity=0.209 Sum_probs=119.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~IerA 419 (518)
+|+|+|.||||||||+|+|++.+.. +++++.||.....++...+ +.++.+|||||+.+..+. ...+...+...+..|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998764 4788999998777766554 568999999998764221 111233345667889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI~ 498 (518)
|+++||+|++...... ..+...+.. .++|+++|+||+|+.........+......... +++++||++|.|++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 9999999999865543 334444442 368999999999997543333333333232333 79999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+|+++|.+.++.
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999998765
No 18
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=3.7e-22 Score=213.48 Aligned_cols=212 Identities=25% Similarity=0.299 Sum_probs=144.8
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCCCCCCC---Ccccc-------CCCCCchhhhhhhheeceeeeeeCCCCCChhHHHHHH
Q 046233 291 VPGQKALLLPGGRGGRGNASFKSGTNKV---PRIAE-------NGEEGPEMWLELELKLVADVGIVGAPNAGKSTLLSVI 360 (518)
Q Consensus 291 ~~g~~~l~a~GG~GG~Gn~~fks~~n~~---P~~~~-------~G~~Ge~~~l~lELK~ia~V~LVG~pNAGKSTLLn~L 360 (518)
..+..+...+||.|.+|+...+....+. .++.. .-...+..........++.|+|||+||||||||+|+|
T Consensus 138 ~~~~~l~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~L 217 (426)
T PRK11058 138 RGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRI 217 (426)
T ss_pred ccccchhhhcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHH
Confidence 3444555567888888888776544332 11100 0000001111112224578999999999999999999
Q ss_pred hccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcch---hhhccccccCceEEEEeCCCCCCHHHH
Q 046233 361 SAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGH---EFLRHTERCSALVHVIDGSAEQPEFEF 437 (518)
Q Consensus 361 s~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~---~fLr~IerADvlL~VVDaS~~~s~e~~ 437 (518)
++.+..+.+++|+|+++....+.+.....+.+|||||++..... .+.. ..+.++..||++|+|+|++++.+...+
T Consensus 218 t~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~--~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 218 TEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH--DLVAAFKATLQETRQATLLLHVVDAADVRVQENI 295 (426)
T ss_pred hCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH--HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH
Confidence 99887788999999999998888865458999999998653111 1222 234557889999999999998877777
Q ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCc-eEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 438 DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIE-PFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 438 ~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~-i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
..+..+|..... .++|+++|+||+|+..... ..+. . ...+.+ +++|||++|.|+++|+++|.+.+..
T Consensus 296 ~~v~~iL~el~~--~~~pvIiV~NKiDL~~~~~--~~~~-~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 296 EAVNTVLEEIDA--HEIPTLLVMNKIDMLDDFE--PRID-R-DEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhcc--CCCCEEEEEEcccCCCchh--HHHH-H-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 666666664432 3689999999999974321 1111 1 112344 5889999999999999999988753
No 19
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=3.2e-21 Score=174.33 Aligned_cols=159 Identities=18% Similarity=0.122 Sum_probs=113.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.++. ...+.+|||||+.+.. ..+..+++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~~ 73 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 73 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHHhcC
Confidence 37899999999999999999986542 2333333222223333332 2357889999975421 1223345669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
+++++|+|+++..++..+..+...+..+. .....|++||+||+|+........+..+..+..+++++++||+++.|+++
T Consensus 74 ~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 74 EGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHH
Confidence 99999999999887777776666665432 22478999999999997644334455555566678999999999999999
Q ss_pred HHHHHHHHH
Q 046233 500 VISAAYQLL 508 (518)
Q Consensus 500 L~~~L~e~L 508 (518)
+|++|.+.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 20
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.87 E-value=3.4e-21 Score=176.56 Aligned_cols=159 Identities=15% Similarity=0.065 Sum_probs=118.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........|.++.+.....+..+.. ..+.+|||||+..... + ...+++.|
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA----I---TSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH----H---HHHHHCCC
Confidence 58999999999999999999987765555566555554444555432 4689999999754221 1 22345679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+++|+|+|+++..++..+..|...+..... .+.|++||+||+|+...... .++........+++++++||+++.|++
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 77 VGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVE 154 (165)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999988888777777776654432 35899999999999764432 344555555567889999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
+++++|.+.+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 21
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=5e-21 Score=183.24 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=118.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
+|++||.+|||||||+++|+.........+....+.....+.++ ....+.+|||||+.... ..+..+++.+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~a 74 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-------GMTRVYYRGA 74 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-------hhHHHHhCCC
Confidence 78999999999999999999865433333333333444445544 23568999999985421 1223345679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcC--CCCCCCCEEEEEeCCCCCCcc-cchHHHHHHHHhcC-CceEEEeccCCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFS--PEIAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQARG-IEPFCMSAVKRE 495 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~--~~l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~~g-~~i~~ISAktge 495 (518)
+++|+|+|++++.+++.+..|..++.... ......|++||+||+|+.... ...+++.+.....+ +.++++||+++.
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~ 154 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGI 154 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCC
Confidence 99999999999988888877777665321 123568999999999997422 23445666666666 689999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 046233 496 GTHEVISAAYQLLQKNK 512 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~ 512 (518)
|++++|++|.+.+....
T Consensus 155 ~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 155 NIEEAMRFLVKNILAND 171 (201)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999876543
No 22
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=2.2e-21 Score=185.34 Aligned_cols=163 Identities=28% Similarity=0.375 Sum_probs=124.4
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcch---hhhc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGH---EFLR 414 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~---~fLr 414 (518)
+.+++|+|+|.+|||||||+++|++......+++++|+.+....+.+.....+.+|||||+.+..... +.. ..+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ--LVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH--HHHHHHHHHH
Confidence 45679999999999999999999998766677889999998888877654589999999986532211 111 1223
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCC
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
++..+|++++|+|++++.+......+...+..+. ..++|+++|+||+|+....... ..+.....+++++||+++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~--~~~~~viiV~NK~Dl~~~~~~~----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG--AEDIPMILVLNKIDLLDDEELE----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC--cCCCCEEEEEEccccCChHHHH----HHhhcCCCceEEEEcCCC
Confidence 4567999999999998877777666666665443 2468999999999997653321 333444678999999999
Q ss_pred CCHHHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQLL 508 (518)
Q Consensus 495 eGI~eL~~~L~e~L 508 (518)
.|+++++++|.+.|
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998753
No 23
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.87 E-value=5.2e-21 Score=175.84 Aligned_cols=160 Identities=14% Similarity=0.087 Sum_probs=117.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||++++++........+..+.+.....+.+.. ...+.+|||||+..... .....++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHhCcC
Confidence 5899999999999999999998765444334333333334444432 24789999999754221 223345679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|+++++++..+..|...+..+. ....|+++|+||+|+...... .++........+++++++||+++.|++
T Consensus 76 ~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 76 HGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVE 153 (166)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHH
Confidence 99999999999888888777777766543 246899999999999765433 244455555567899999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
++|.+|.+.+.
T Consensus 154 ~~~~~i~~~~~ 164 (166)
T cd01869 154 QAFMTMAREIK 164 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 24
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.87 E-value=5.6e-21 Score=177.02 Aligned_cols=162 Identities=14% Similarity=0.032 Sum_probs=120.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|++||.+|||||||++++++..+.....+..+.+.....+.... ...+.||||||..+. ......+++.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ 76 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF-------RSITRSYYRG 76 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhcc
Confidence 46899999999999999999998765444444444444444444442 247899999997542 2223445677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|++++.++..+..|...+..+. ..+.|++||+||+|+...... .++....+...++.++++||+++.|+
T Consensus 77 ~d~il~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 154 (168)
T cd01866 77 AAGALLVYDITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999888888777777666442 246899999999999754332 34455555666889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|.++.+.+.+
T Consensus 155 ~~~~~~~~~~~~~ 167 (168)
T cd01866 155 EEAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 25
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=5.3e-21 Score=173.96 Aligned_cols=161 Identities=19% Similarity=0.170 Sum_probs=114.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++.+......+..+.+.....+.+. ....+.+|||||+..... +... .+..+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE----VRNE---FYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH----HHHH---HhccCC
Confidence 78999999999999999999876533222322222222233332 235789999999854221 2222 356699
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCC---CCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcCCceEEEeccCCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPE---IAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~---l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
++|+|+|++++.++..+..|..++..+... ....|+++|+||+|+..... ..++........+++++++||+++.|
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEG 154 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999988887777777777654432 24689999999999974322 23344445555678999999999999
Q ss_pred HHHHHHHHHHHHH
Q 046233 497 THEVISAAYQLLQ 509 (518)
Q Consensus 497 I~eL~~~L~e~L~ 509 (518)
+++++++|.+.+-
T Consensus 155 i~~l~~~l~~~l~ 167 (168)
T cd04119 155 VNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987763
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.87 E-value=5.1e-21 Score=185.63 Aligned_cols=163 Identities=16% Similarity=0.052 Sum_probs=121.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
+|++||.+|||||||+++|+.........++.+.+.....+.++. ...+.||||||+..... +... +++.|
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~----l~~~---~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK----MLDK---YIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH----HHHH---HhhcC
Confidence 789999999999999999998765444445555565555566543 35789999999754221 2223 35679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPE-IAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~-l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
|++|+|+|++++.+++.+..|..++..+... ....|+++|+||+|+....... +.........++++++|||++|.||
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv 154 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRV 154 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 9999999999999988888888877755432 2346899999999997543332 3344444555788999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|.+.+...
T Consensus 155 ~~lf~~l~~~l~~~ 168 (215)
T cd04109 155 NLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887643
No 27
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.86 E-value=1.2e-21 Score=202.28 Aligned_cols=166 Identities=34% Similarity=0.536 Sum_probs=131.1
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-----------------------CCceEEEEcCCCCc
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-----------------------YDSTMVVADLPGLL 399 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-----------------------~~~~l~I~DTPGli 399 (518)
|++||.||||||||+|+|++....+++|||+|++|+.|...+. ....+++|||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 6899999999999999999999889999999999999987752 12479999999999
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCC-------------CCCHHHHHHHHHHHHhc-------------------
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSA-------------EQPEFEFDAVRLELEMF------------------- 447 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~-------------~~s~e~~~~L~~eL~~~------------------- 447 (518)
++++++.+++..|+.+++.||+++||+|++. .++..+++.+..||..+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999974 24555665555554431
Q ss_pred ------------C------------------C------------------CCCCCCEEEEEeCCCCCCcccchHHHHHHH
Q 046233 448 ------------S------------------P------------------EIAEKPYIVAFNKMDLPEAYEKWPSFKEKL 479 (518)
Q Consensus 448 ------------~------------------~------------------~l~~kPiIVVlNKiDL~~~~e~~eel~~~l 479 (518)
. + -+..+|+|+|+||+|+....+..+.+. .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~--~ 238 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR--L 238 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH--h
Confidence 0 0 023579999999999865433222222 1
Q ss_pred HhcCCceEEEeccCCCCHHHHHH-HHHHHHHh
Q 046233 480 QARGIEPFCMSAVKREGTHEVIS-AAYQLLQK 510 (518)
Q Consensus 480 ~~~g~~i~~ISAktgeGI~eL~~-~L~e~L~~ 510 (518)
......++++||+.+.++++|.+ .+.++++.
T Consensus 239 ~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 239 KYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred hCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 12245799999999999999998 69988865
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=6.5e-21 Score=176.15 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=118.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||++++++..+.....+..+.+.....+.++. ...+.+|||||+..... ....+++.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------~~~~~~~~ 75 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------ITTAYYRG 75 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhCC
Confidence 35899999999999999999998765443333333333333344442 24789999999754221 22344677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
||++|+|+|++++.++..+..|...+..+. ..+.|++||+||+|+.+.... .++........+++++++||+++.|+
T Consensus 76 ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 153 (167)
T cd01867 76 AMGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999888877777776665443 246899999999999864432 34455556666789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|.+|.+.+..
T Consensus 154 ~~~~~~i~~~~~~ 166 (167)
T cd01867 154 EEAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987743
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=7.4e-21 Score=175.37 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=114.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCcee-eeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTT-LLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTT-l~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+++|.+|||||||+++|+.... ...++.|+ .+.....+.++. ...+.+|||||+.... ..+..+++.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR-------AVTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhcC
Confidence 5899999999999999999997654 23333322 111122233332 2468999999975422 223345677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
++++|+|+|++++.++..+..|...+.... ....|+++|+||+|+...... .++..+.....+++++++||+++.|+
T Consensus 75 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 152 (166)
T cd04122 75 AAGALMVYDITRRSTYNHLSSWLTDARNLT--NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 999999999999888887777766655432 246899999999999765443 34555555566789999999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 498 HEVISAAYQLLQ 509 (518)
Q Consensus 498 ~eL~~~L~e~L~ 509 (518)
+++|.++...+-
T Consensus 153 ~e~f~~l~~~~~ 164 (166)
T cd04122 153 EDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999987663
No 30
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=6.7e-21 Score=173.41 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=113.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||++++...... ..+..|+.......+.++. ...+.||||||+.+... +. ..+++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~---~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----MR---DLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----HH---HHHhhcC
Confidence 47999999999999999999976542 3343333333333344442 24678999999865322 22 2335669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH-HHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP-SFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e-el~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+++++|+|+++..+++.+..|..++..+.. ....|+++|+||+|+........ ......+..+.+++++||+++.|++
T Consensus 74 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04136 74 QGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVD 152 (163)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999998888888777777765432 24789999999999975433322 2333334446789999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
++|++|.+.+
T Consensus 153 ~l~~~l~~~~ 162 (163)
T cd04136 153 EVFADLVRQI 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 31
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.86 E-value=9.8e-21 Score=183.46 Aligned_cols=160 Identities=15% Similarity=0.082 Sum_probs=116.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.|+++|..|||||||++++....+.....+..+.+.....+.++. ...+.||||+|+..... + +..+++.||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~----l---~~~y~~~ad 74 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS----I---TSAYYRSAK 74 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH----H---HHHHhcCCC
Confidence 588999999999999999998665332223223333334455542 25789999999865322 2 233466799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-Hhc-CCceEEEeccCCCCHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-QAR-GIEPFCMSAVKREGTH 498 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-~~~-g~~i~~ISAktgeGI~ 498 (518)
++|+|+|++++.+++.+..|...+..+. ..+.|++||+||+||....+......+.+ ... ++.++++||++|.||+
T Consensus 75 ~iIlVfDvtd~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~ 152 (202)
T cd04120 75 GIILVYDITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVD 152 (202)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHH
Confidence 9999999999999999888877776543 24689999999999976544433333333 332 6789999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
++|++|.+.+..
T Consensus 153 e~F~~l~~~~~~ 164 (202)
T cd04120 153 EIFLKLVDDILK 164 (202)
T ss_pred HHHHHHHHHHHH
Confidence 999999987643
No 32
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.86 E-value=1.4e-20 Score=171.24 Aligned_cols=160 Identities=15% Similarity=0.099 Sum_probs=117.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++........+..+.+.....+.++.. ..+.+||+||+..... + ....+..||
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~---~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS----I---TSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH----H---HHHHhCCCC
Confidence 7899999999999999999987654444454454444444555422 4789999999754221 2 222345699
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++|+|+|++++.+++.+..|...+..+.. ...|+++|+||+|+..... ..+...+.....+++++++||+++.|+++
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 152 (164)
T smart00175 75 GALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEE 152 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999998887777766666655432 4799999999999976433 23445555555678999999999999999
Q ss_pred HHHHHHHHHHh
Q 046233 500 VISAAYQLLQK 510 (518)
Q Consensus 500 L~~~L~e~L~~ 510 (518)
++++|.+.+.+
T Consensus 153 l~~~i~~~~~~ 163 (164)
T smart00175 153 AFEELAREILK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999988753
No 33
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.85 E-value=1.8e-20 Score=180.51 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=116.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchh----hhccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHE----FLRHT 416 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~----fLr~I 416 (518)
+|+|+|.+|||||||++++++........|.++.......+.++.. ..+.||||||+...... .+.. ....+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~~~~~ 78 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPRFRGL 78 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHHHhhh
Confidence 7899999999999999999987654444444433333333444422 46889999997542211 1122 23446
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcccch-HHHHHHHH-hcCCceEEEeccC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSP-EIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQ-ARGIEPFCMSAVK 493 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~-~~g~~i~~ISAkt 493 (518)
+.||++|+|+|++++.+++.+..|..++..... .....|++||+||+|+....... +.+....+ ..++++++|||++
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~ 158 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCC
Confidence 789999999999999888888777776654321 23568999999999996543222 22333323 3478999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 046233 494 REGTHEVISAAYQLLQKN 511 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~~ 511 (518)
|.||++||+.+.+.+-..
T Consensus 159 g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 159 NWHILLLFKELLISATTR 176 (198)
T ss_pred CCCHHHHHHHHHHHhhcc
Confidence 999999999998776543
No 34
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.85 E-value=2.9e-21 Score=204.85 Aligned_cols=167 Identities=35% Similarity=0.545 Sum_probs=128.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-----------------------CceEEEEcCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-----------------------DSTMVVADLPG 397 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-----------------------~~~l~I~DTPG 397 (518)
.+|+|||.||||||||+|+|++....+++|||+|++|+.|++.+.. ...+++|||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 4799999999999999999999998899999999999999876411 14688999999
Q ss_pred CccccccCCCcchhhhccccccCceEEEEeCCC-------------CCCHHHHHHHHHHHHhcC----------------
Q 046233 398 LLEGAHQGFGLGHEFLRHTERCSALVHVIDGSA-------------EQPEFEFDAVRLELEMFS---------------- 448 (518)
Q Consensus 398 liegas~~~gLg~~fLr~IerADvlL~VVDaS~-------------~~s~e~~~~L~~eL~~~~---------------- 448 (518)
++++++.+.+++..|+++++.||++++|+|++. .++..+++.+..||..++
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999972 234555555444443210
Q ss_pred ---------------------------------C------------------CCCCCCEEEEEeCCCCCCcccchHHHHH
Q 046233 449 ---------------------------------P------------------EIAEKPYIVAFNKMDLPEAYEKWPSFKE 477 (518)
Q Consensus 449 ---------------------------------~------------------~l~~kPiIVVlNKiDL~~~~e~~eel~~ 477 (518)
+ ....+|+|+|+||+|+......+..+.+
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~ 241 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIERLKE 241 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHHHHHh
Confidence 0 1135899999999998643332333333
Q ss_pred HHHhcCCceEEEeccCCCCHHH-HHHHHHHHHHh
Q 046233 478 KLQARGIEPFCMSAVKREGTHE-VISAAYQLLQK 510 (518)
Q Consensus 478 ~l~~~g~~i~~ISAktgeGI~e-L~~~L~e~L~~ 510 (518)
. ....++++||+.+.++++ +++.+.++++.
T Consensus 242 ~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 242 E---KYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred c---CCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 2 345799999999999999 77777776543
No 35
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.85 E-value=1.7e-20 Score=174.60 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=114.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-----------CCceEEEEcCCCCccccccCCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-----------YDSTMVVADLPGLLEGAHQGFGL 408 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-----------~~~~l~I~DTPGliegas~~~gL 408 (518)
..+|+++|.+|||||||+++++.........+..+.+.....+.+. ....+.||||||+.+... +
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~ 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRS----L 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHH----H
Confidence 3589999999999999999999875433222222222222223222 125789999999755222 2
Q ss_pred chhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceE
Q 046233 409 GHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPF 487 (518)
Q Consensus 409 g~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~ 487 (518)
...+++.+|++|+|+|++++.++..+..|..++..+.. ..+.|++||+||+|+...... .++..+.....+++++
T Consensus 80 ---~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 80 ---TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred ---HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEE
Confidence 23345679999999999998888887777766654321 236799999999999764332 2345555556678999
Q ss_pred EEeccCCCCHHHHHHHHHHHHH
Q 046233 488 CMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++||+++.|++++|++|.+.+-
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988664
No 36
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=1.8e-20 Score=170.73 Aligned_cols=159 Identities=17% Similarity=0.087 Sum_probs=113.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||++++++... ...+..|+.......+.++. ...+.+|||||+.+... + ...++..+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA----M---REQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH----H---HHHHHhhC
Confidence 4899999999999999999997654 33444343322233333332 24688999999765221 2 23345679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|+++..++.....|...+.... ...+.|++||+||+|+...... .+...+..+..+++++++||+++.|++
T Consensus 75 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 153 (164)
T cd04145 75 EGFLLVFSVTDRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVD 153 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHH
Confidence 99999999999888777776666654332 1246899999999999764432 234445555557899999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04145 154 KAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 37
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=1.1e-20 Score=179.38 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=115.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|+...+. ..++.|+.......+.++. ...+.||||||+.+... + ...++..+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA----L---RDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHHhCC
Confidence 5889999999999999999976542 2344443333222333332 23588999999754222 2 223456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCC-CCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPE-IAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~-l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
++|+|+|+++..++..+..|...+...... ..+.|++||+||+|+....... ....+.....+++++++||+++.|++
T Consensus 73 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 152 (190)
T cd04144 73 GFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVE 152 (190)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHH
Confidence 999999999988888887777776544321 2468999999999997543332 23333444457899999999999999
Q ss_pred HHHHHHHHHHHhhhH
Q 046233 499 EVISAAYQLLQKNKE 513 (518)
Q Consensus 499 eL~~~L~e~L~~~~~ 513 (518)
++|.+|.+.+....+
T Consensus 153 ~l~~~l~~~l~~~~~ 167 (190)
T cd04144 153 RAFYTLVRALRQQRQ 167 (190)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988765443
No 38
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=1.9e-20 Score=171.14 Aligned_cols=160 Identities=18% Similarity=0.070 Sum_probs=112.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++..... .+..|+.+.....+..+. ...+.+|||||+.+.. .....++..++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-------AMRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-------HHHHHHHhhCC
Confidence 78999999999999999999865422 233333222222333332 2468899999986522 12223456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++++|+|++++.++..+..|...+..... ..+.|+++|+||+|+...... .+.........+.+++++||+++.|+++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (164)
T smart00173 74 GFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDE 152 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHH
Confidence 99999999998887777776665543321 236899999999999764332 2334444555578999999999999999
Q ss_pred HHHHHHHHHHh
Q 046233 500 VISAAYQLLQK 510 (518)
Q Consensus 500 L~~~L~e~L~~ 510 (518)
+|++|.+.+..
T Consensus 153 l~~~l~~~~~~ 163 (164)
T smart00173 153 AFYDLVREIRK 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999987653
No 39
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=1.7e-20 Score=171.23 Aligned_cols=157 Identities=15% Similarity=0.045 Sum_probs=115.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|.+........+..+.......+.++. ...+.+||+||+..... ....+++.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~~ 74 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS-------VTRSYYRGAA 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH-------hHHHHhcCCC
Confidence 789999999999999999998765444344333333333444442 24789999999854221 2233456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++|+|+|+++..++..+..|...+..+. ..+.|++||+||+|+...... .++........++.++++||+++.|+++
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 75 GALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE 152 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 9999999999888877777766665432 246899999999999764333 3445556666678999999999999999
Q ss_pred HHHHHHHH
Q 046233 500 VISAAYQL 507 (518)
Q Consensus 500 L~~~L~e~ 507 (518)
+|++|.+.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd04113 153 AFLKCARS 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 40
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=2.3e-20 Score=170.10 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=115.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++........+..+.+.....+.+.. ...+.+|||||+..... + ....++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT----L---TSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHhCCCC
Confidence 789999999999999999998765443333333322323333332 25789999999754221 2 223356799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL 500 (518)
++|+|+|++++.++..+..|...+..+.. ..+.|+++|+||+|+.......++..+.....+++++++||+++.|++++
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 75 GVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQA 153 (161)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHH
Confidence 99999999998888877777776665532 35789999999999985444445555666666889999999999999999
Q ss_pred HHHHHHH
Q 046233 501 ISAAYQL 507 (518)
Q Consensus 501 ~~~L~e~ 507 (518)
+++|.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9998865
No 41
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.85 E-value=1.9e-20 Score=172.64 Aligned_cols=159 Identities=18% Similarity=0.077 Sum_probs=109.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||++++++...... +..|+-......+.... ...+.+|||||+..... + ...++..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~ 73 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA----M---QRLSISKG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECCEEEEEEEEECCCCCcchH----H---HHHHhhcC
Confidence 3799999999999999999998764322 22121111111222221 24688999999865321 1 12235669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSP-EIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+++|+|+|+++..++..+..|+..+..+.. ...+.|+++|+||+|+....+.. ..........++++++|||+++.|+
T Consensus 74 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v 153 (165)
T cd04140 74 HAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNV 153 (165)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCH
Confidence 999999999999888888777776664432 22578999999999997643332 2223333444678999999999999
Q ss_pred HHHHHHHHHH
Q 046233 498 HEVISAAYQL 507 (518)
Q Consensus 498 ~eL~~~L~e~ 507 (518)
+++|++|.++
T Consensus 154 ~~~f~~l~~~ 163 (165)
T cd04140 154 QELFQELLNL 163 (165)
T ss_pred HHHHHHHHhc
Confidence 9999999754
No 42
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.85 E-value=1.8e-20 Score=171.94 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=112.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++++.... ...++.|+.......+.+.. ...+.+|||||+..... +... +++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~~~~~ 73 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----MRDL---YMKNG 73 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----HHHH---HHhhC
Confidence 3789999999999999999986533 33444444333223344432 24678999999855222 2222 35669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|+++..+++.+..|...+.... ...+.|+++|+||+|+....... +......+..+++++++||+++.|++
T Consensus 74 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (164)
T cd04175 74 QGFVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVN 152 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 99999999998888777776666665332 23578999999999997643322 23333444557899999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
++|.+|.+.+.
T Consensus 153 ~~~~~l~~~l~ 163 (164)
T cd04175 153 EIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHhh
Confidence 99999987664
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.85 E-value=9.5e-21 Score=173.68 Aligned_cols=155 Identities=24% Similarity=0.267 Sum_probs=110.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC----CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI----ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I----a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
+|+++|.+|||||||+++|+...... .....+|+....+.+.++ +..+.+|||||+... ...+..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~-------~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG-NARLKFWDLGGQESL-------RSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC-CEEEEEEECCCChhh-------HHHHHHHhC
Confidence 47899999999999999998754321 122345666666677776 579999999998652 223445577
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-------cCCceEEEe
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-------RGIEPFCMS 490 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-------~g~~i~~IS 490 (518)
.+|++++|+|+++..++.....+...+.. .....+.|+++|+||+|+..... ..++.+.+.. ..++++++|
T Consensus 73 ~~~~~v~vvd~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S 150 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLR-NEALEGVPLLILANKQDLPDALS-VEEIKEVFQDKAEEIGRRDCLVLPVS 150 (167)
T ss_pred CCCEEEEEEECchHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEEccccccCCC-HHHHHHHhccccccccCCceEEEEee
Confidence 89999999999887665555444443322 11235789999999999876432 3344444332 245899999
Q ss_pred ccCCCCHHHHHHHHHH
Q 046233 491 AVKREGTHEVISAAYQ 506 (518)
Q Consensus 491 AktgeGI~eL~~~L~e 506 (518)
|+++.|++++++||.+
T Consensus 151 a~~g~gv~e~~~~l~~ 166 (167)
T cd04160 151 ALEGTGVREGIEWLVE 166 (167)
T ss_pred CCCCcCHHHHHHHHhc
Confidence 9999999999999975
No 44
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.9e-20 Score=170.75 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=116.3
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
+.+++|+++|.+|||||||+++|+.........+..+.+.....+.+.. ...+.+||+||+.... ..+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~ 77 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYY 77 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHh
Confidence 4568999999999999999999997654333334334444444455542 2468899999975422 1223346
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~ISAktge 495 (518)
..+|++++|+|+++..++..+..|..++..+.. ...|+++|+||+|+....+....+.+.+.. ...+++++||+++.
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 155 (169)
T cd04114 78 RSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESD 155 (169)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 679999999999988777766666666654432 358999999999997655544444444433 35789999999999
Q ss_pred CHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLL 508 (518)
Q Consensus 496 GI~eL~~~L~e~L 508 (518)
|++++|++|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 45
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.85 E-value=2.9e-20 Score=178.18 Aligned_cols=162 Identities=13% Similarity=0.089 Sum_probs=118.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+++|..+||||||+.++..........+..+.+...-.+.++. ...+.||||+|+..... + +..+++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~----l---~~~~~~ 77 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT----I---FRSYSR 77 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH----H---HHHHhc
Confidence 346899999999999999999997654221112222222223344432 25789999999865221 2 233456
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.+++.+..|..++..+. ...|+|||+||+||...... .++.....+..++++++|||+++.|
T Consensus 78 ~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~ 154 (189)
T cd04121 78 GAQGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN 154 (189)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 7999999999999999999988888886553 46899999999999754333 3455556666788999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
|+++|++|.+.+..
T Consensus 155 V~~~F~~l~~~i~~ 168 (189)
T cd04121 155 ITESFTELARIVLM 168 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986653
No 46
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=8.7e-21 Score=187.53 Aligned_cols=162 Identities=29% Similarity=0.438 Sum_probs=126.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
++|+|+|.||||||||+++|++....+++|+|+|+.+..|.+.+. +..+++|||||+.+.+....++..+++..++.+|
T Consensus 1 ~~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK-GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC-CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 479999999999999999999998888999999999999998886 5789999999998877666666777888899999
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH--------------------------------------------hcC--------
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELE--------------------------------------------MFS-------- 448 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~--------------------------------------------~~~-------- 448 (518)
++++|+|+++... +...+..+|. .|.
T Consensus 80 ~il~V~D~t~~~~--~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 80 LILMVLDATKPEG--HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred EEEEEecCCcchh--HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 9999999986432 2333333332 111
Q ss_pred --------------CCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 449 --------------PEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 449 --------------~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.....+|+++|+||+|+....+ ... +.. ...++++||+++.|+++|++.|++.|.-.
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~----~~~-~~~-~~~~~~~SA~~g~gi~~l~~~i~~~L~~i 228 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE----LDL-LAR-QPNSVVISAEKGLNLDELKERIWDKLGLI 228 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH----HHH-Hhc-CCCEEEEcCCCCCCHHHHHHHHHHHhCcE
Confidence 1123469999999999975432 222 222 34789999999999999999999987643
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.2e-20 Score=171.80 Aligned_cols=159 Identities=12% Similarity=0.050 Sum_probs=111.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||+++|..........+..+.+.....+.++.. ..+.+|||||+.... ......+..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~ 75 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR-------TITQSYYRS 75 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhcc
Confidence 368999999999999999999876543222222223333334444422 478999999975421 122334566
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcC-CceEEEeccCCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARG-IEPFCMSAVKREG 496 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g-~~i~~ISAktgeG 496 (518)
+|++++|+|++++.++..+..|...+.... ....|+++|+||+|+....+. ........+..+ ..++++||+++.|
T Consensus 76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (165)
T cd01864 76 ANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence 999999999999888777777766665432 246899999999999765433 234444444444 3689999999999
Q ss_pred HHHHHHHHHHH
Q 046233 497 THEVISAAYQL 507 (518)
Q Consensus 497 I~eL~~~L~e~ 507 (518)
+++++++|.+.
T Consensus 154 v~~~~~~l~~~ 164 (165)
T cd01864 154 VEEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 48
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=2.9e-20 Score=176.63 Aligned_cols=161 Identities=16% Similarity=0.080 Sum_probs=117.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeece-eeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPN-LGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~-lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
+|++||.+|||||||+++|....+....++.|+.... ...+.++. ...+.||||||+..... + ....+..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS----V---THAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH----h---hHHHccCC
Confidence 7899999999999999999987765544444433222 22333332 24789999999754221 1 22345669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|+++..++..+..|...+..+.+ ...|+++|+||+|+...... .++........+++++++||+++.|++
T Consensus 75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVE 152 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999998888887777777765432 36899999999999754332 234444445557899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
+||.+|.+.+...
T Consensus 153 ~l~~~l~~~~~~~ 165 (191)
T cd04112 153 LAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888655
No 49
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=3.7e-20 Score=170.59 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=109.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|++||.+|||||||+++++.........+..........+.++. ...+.+|||||+..... + +..+++.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~d 74 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT----M---HASYYHKAH 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh----h---hHHHhCCCC
Confidence 789999999999999999997654322222111111111222331 24688999999865221 2 233466799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL 500 (518)
++|+|+|++++.++.++..|..++.... ...|+++|+||+|+... ...+........+++++++||+++.|++++
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCchh--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999888777777777665432 36899999999998532 122333334445789999999999999999
Q ss_pred HHHHHHHHHhh
Q 046233 501 ISAAYQLLQKN 511 (518)
Q Consensus 501 ~~~L~e~L~~~ 511 (518)
|+.+.+.+.++
T Consensus 150 ~~~l~~~~~~~ 160 (161)
T cd04124 150 FQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHhc
Confidence 99999877654
No 50
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.85 E-value=2.8e-20 Score=169.41 Aligned_cols=156 Identities=14% Similarity=0.050 Sum_probs=111.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec---CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~---~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
+|+++|.+|||||||+++|+...+.....+..+.+.....+.+. ....+.||||||+.+... + +..+++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA----I---TKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH----h---HHHHhcC
Confidence 78999999999999999999865432222322232222223332 235799999999754222 2 2334667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|+++++++..+..|...+... ..+.|+++|+||+|+...... .++........+++++++||+++.|+
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 151 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999988877776666655432 347899999999999764433 23444555556789999999999999
Q ss_pred HHHHHHHHHH
Q 046233 498 HEVISAAYQL 507 (518)
Q Consensus 498 ~eL~~~L~e~ 507 (518)
++++++|.+.
T Consensus 152 ~~l~~~l~~~ 161 (162)
T cd04106 152 TELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999999754
No 51
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.85 E-value=3.8e-20 Score=167.35 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=114.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|+|||||+++|..........+.++.......+.+.. ...+.+||+||+..... +...+ +..+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~~~~---~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA----LGPIY---YRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----hhHHH---hccCC
Confidence 789999999999999999998765433333222222233333332 24689999999754322 22223 45699
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++++|+|+++.+++..+..|..++..+.. .++|+++|+||+|+...... .+.+.+.....+++++++||+++.|+++
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~ 152 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEE 152 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999998888888777777765543 26899999999999854333 2344455555678899999999999999
Q ss_pred HHHHHHHHH
Q 046233 500 VISAAYQLL 508 (518)
Q Consensus 500 L~~~L~e~L 508 (518)
++++|.+.+
T Consensus 153 ~~~~l~~~~ 161 (162)
T cd04123 153 LFLSLAKRM 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998764
No 52
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.85 E-value=1.6e-20 Score=169.68 Aligned_cols=155 Identities=26% Similarity=0.350 Sum_probs=114.8
Q ss_pred eeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc--CCCcchhhhccccccCce
Q 046233 345 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ--GFGLGHEFLRHTERCSAL 422 (518)
Q Consensus 345 LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~--~~gLg~~fLr~IerADvl 422 (518)
|+|.+|||||||+++|++....+..++++|.......+.++ +..+.+|||||+.+.... ...+...++.+ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG-GKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC-CeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 68999999999999999987677888999999888888876 468999999998653321 11133344444 589999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 423 VHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 423 L~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
|+|+|+++.... ..+..++.. .++|+++|+||+|+.................+++++++||+++.|++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE-----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH-----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 999999875432 223333332 368999999999997654333333333344478999999999999999999
Q ss_pred HHHHHHH
Q 046233 503 AAYQLLQ 509 (518)
Q Consensus 503 ~L~e~L~ 509 (518)
+|.+.++
T Consensus 151 ~l~~~~~ 157 (158)
T cd01879 151 AIAELAE 157 (158)
T ss_pred HHHHHhc
Confidence 9987653
No 53
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.85 E-value=4.2e-20 Score=170.41 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=114.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||++++..........+..+.......+.++. ...+.||||||+..... + +..+++.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~ 77 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS----L---RTPFYRG 77 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH----h---HHHHhcC
Confidence 35899999999999999999997655333333222222222333332 24688999999754222 2 2334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC-CceEEEeccCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG-IEPFCMSAVKRE 495 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g-~~i~~ISAktge 495 (518)
+|++|+|+|+++.+++..+..|..++..+.. .....|++||+||+|+.......+++.+.+...+ ++++++||+++.
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 78 SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 9999999999998888887777766654332 1246899999999999744333455666666665 489999999999
Q ss_pred CHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQL 507 (518)
Q Consensus 496 GI~eL~~~L~e~ 507 (518)
|+.++|+++.+.
T Consensus 158 ~v~~~~~~~~~~ 169 (170)
T cd04116 158 NVAAAFEEAVRR 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 54
>PTZ00258 GTP-binding protein; Provisional
Probab=99.85 E-value=6.9e-21 Score=200.95 Aligned_cols=156 Identities=29% Similarity=0.429 Sum_probs=125.4
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC----------------ceEEEEcCCCCcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD----------------STMVVADLPGLLEGA 402 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~----------------~~l~I~DTPGliega 402 (518)
.-.+|+|||.||||||||+|+|++....+++|||||++|+.|.+.+.+. .++.++||||+..++
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3458999999999999999999999999999999999999999987632 259999999999999
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhcCC-----------------------
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMFSP----------------------- 449 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~~~----------------------- 449 (518)
+.+.+++..|+.++++||+++||+|+.. .++..+++.+..+|..++.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~~~~ 179 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKKKEE 179 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccchhhH
Confidence 9988999999999999999999999852 3566666666555542210
Q ss_pred -------------------------------------CCCCCCEEEEEeCC--CC-CCcccchHHHHHHHHhc-CCceEE
Q 046233 450 -------------------------------------EIAEKPYIVAFNKM--DL-PEAYEKWPSFKEKLQAR-GIEPFC 488 (518)
Q Consensus 450 -------------------------------------~l~~kPiIVVlNKi--DL-~~~~e~~eel~~~l~~~-g~~i~~ 488 (518)
-+..+|+|+|+|+. |+ ....+.++.+.+.+... +.++++
T Consensus 180 ~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~ 259 (390)
T PTZ00258 180 KVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIP 259 (390)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEE
Confidence 03468999999999 87 34444566677666665 478999
Q ss_pred EeccCC
Q 046233 489 MSAVKR 494 (518)
Q Consensus 489 ISAktg 494 (518)
+||+..
T Consensus 260 ~sa~~E 265 (390)
T PTZ00258 260 YSAEFE 265 (390)
T ss_pred eeHHHH
Confidence 998654
No 55
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.8e-21 Score=197.45 Aligned_cols=153 Identities=33% Similarity=0.494 Sum_probs=124.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-----------------ceEEEEcCCCCccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-----------------STMVVADLPGLLEGAH 403 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-----------------~~l~I~DTPGliegas 403 (518)
.+++|||.||||||||+|+++.....+++|||+|++|+.|++.+.+- ..+.++|++|+..+||
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 47999999999999999999999988899999999999999987531 2589999999999999
Q ss_pred cCCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhc--------------------------
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMF-------------------------- 447 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~-------------------------- 447 (518)
+++|||.+||.||+.+|+|++|||++. -++..+++.+..||.+.
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~ 162 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKEL 162 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 999999999999999999999999984 24555555444443320
Q ss_pred -----------------------C---------------CCCCCCCEEEEEeCCCCCCcccc--hHHHHHHHHhcCCceE
Q 046233 448 -----------------------S---------------PEIAEKPYIVAFNKMDLPEAYEK--WPSFKEKLQARGIEPF 487 (518)
Q Consensus 448 -----------------------~---------------~~l~~kPiIVVlNKiDL~~~~e~--~eel~~~l~~~g~~i~ 487 (518)
. .-+..+|+++|+||.|......+ ++.+++..+..+.+++
T Consensus 163 ~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV 242 (372)
T COG0012 163 KEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVV 242 (372)
T ss_pred HHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEE
Confidence 0 01236899999999998765433 6777777777778999
Q ss_pred EEeccC
Q 046233 488 CMSAVK 493 (518)
Q Consensus 488 ~ISAkt 493 (518)
++||+.
T Consensus 243 ~~sA~~ 248 (372)
T COG0012 243 PVSAAI 248 (372)
T ss_pred EeeHHH
Confidence 999964
No 56
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=2.4e-20 Score=169.34 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=106.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC---CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT---IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.|+++|.+|||||||+++|++.... ....+.+|+......+.+.....+.+|||||+.+ +...+...+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-------~~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------FIKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-------HHHHHHhhhhc
Confidence 5899999999999999999974321 1223466777666666654356899999999854 22334556778
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---chHHHHHHHHh---cCCceEEEecc
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE---KWPSFKEKLQA---RGIEPFCMSAV 492 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---~~eel~~~l~~---~g~~i~~ISAk 492 (518)
||++++|+|+++.........+ ..+... ..+|+++|+||+|+..... ...++.+.++. .+++++++||+
T Consensus 75 ad~ii~V~d~~~~~~~~~~~~~-~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (164)
T cd04171 75 IDLVLLVVAADEGIMPQTREHL-EILELL----GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV 149 (164)
T ss_pred CCEEEEEEECCCCccHhHHHHH-HHHHHh----CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence 9999999999863222222222 223221 2359999999999976421 22344555554 35799999999
Q ss_pred CCCCHHHHHHHHHH
Q 046233 493 KREGTHEVISAAYQ 506 (518)
Q Consensus 493 tgeGI~eL~~~L~e 506 (518)
++.|+++++++|..
T Consensus 150 ~~~~v~~l~~~l~~ 163 (164)
T cd04171 150 TGEGIEELKEYLDE 163 (164)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998864
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.84 E-value=5.3e-20 Score=171.03 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=111.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe--c-CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF--D-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~--~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
+|+++|.+|||||||++++........ + ..|.......+.+ + ....+.+|||||+..... +... ++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK-Y-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----LRDG---YYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----ccHH---HhcC
Confidence 789999999999999999986543221 1 1233222222222 1 125789999999854221 2222 3456
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|+++..++..+..|...+.... .+.|+++|+||+|+..... .....+......++++++||+++.|++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 148 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIKDRKV-KAKQITFHRKKNLQYYEISAKSNYNFE 148 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhcccccC-CHHHHHHHHHcCCEEEEEeCCCCCChH
Confidence 999999999999888888777777776543 2799999999999974332 223334444557799999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
++|++|.+.+.+
T Consensus 149 ~~f~~l~~~~~~ 160 (166)
T cd00877 149 KPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999988754
No 58
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.84 E-value=3.8e-20 Score=173.39 Aligned_cols=160 Identities=13% Similarity=0.045 Sum_probs=114.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeec-eeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLP-NLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p-~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+++|.+|||||||++++....+.. .+.. |+.. ....+.++. ...+.||||||+.+... +. ..++..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l~---~~~~~~ 73 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHDP-TIEDAYKQQARIDNEPALLDILDTAGQAEFTA----MR---DQYMRC 73 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcCC-cccceEEEEEEECCEEEEEEEEeCCCchhhHH----Hh---HHHhhc
Confidence 379999999999999999999765432 2222 2221 112233332 24689999999865322 22 234556
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|++++.++.....|..++..... ..+.|+++|+||+|+....... ++..+..+..++++++|||+++.||
T Consensus 74 ~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 152 (172)
T cd04141 74 GEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYI 152 (172)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCH
Confidence 9999999999999999888877766664321 2468999999999997544332 3344444556889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|++|.+.+..
T Consensus 153 ~~~f~~l~~~~~~ 165 (172)
T cd04141 153 DDAFHGLVREIRR 165 (172)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 59
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=1.1e-20 Score=190.74 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=128.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~IerA 419 (518)
-|++||.||||||||+|+|.+++..+ ++.|.||.....|++..+ ..+++++||||+.+..+. +..|.......+..+
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 69999999999999999999998876 889999999999999877 789999999999775432 333445556668899
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc--CCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR--GIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~--g~~i~~ISAktgeGI 497 (518)
|+++||+|+....... .+.+.+.|+. .+.|+++++||+|+......+..+.+.+... ...++++||+++.|+
T Consensus 87 Dlilfvvd~~~~~~~~-d~~il~~lk~-----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 87 DLILFVVDADEGWGPG-DEFILEQLKK-----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred cEEEEEEeccccCCcc-HHHHHHHHhh-----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 9999999998843332 2334444542 3579999999999987765434555555443 348999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+.|.+.|...|++.
T Consensus 161 ~~L~~~i~~~Lpeg 174 (298)
T COG1159 161 DTLLEIIKEYLPEG 174 (298)
T ss_pred HHHHHHHHHhCCCC
Confidence 99999999988753
No 60
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.84 E-value=2.1e-20 Score=170.01 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=102.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|++.......+. .|.......+... ...+.+|||||...... .+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~-~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~ 71 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKG-NLSFTAFDMSGQGKYRG-------LWEHYYKNIQG 71 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEEC-CEEEEEEECCCCHhhHH-------HHHHHHccCCE
Confidence 478999999999999999998643332222 2222222333333 56899999999865221 23334567999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhc-CCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMF-SPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKRE 495 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~-~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktge 495 (518)
+|+|+|+++..++.....+...+... .....++|++||+||+|+..... ..++...+.. ..++++++||+++.
T Consensus 72 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~ 150 (162)
T cd04157 72 IIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT-AVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC-HHHHHHHhCCccccCceEEEEEeeCCCCC
Confidence 99999999877655444433333221 11124689999999999975432 2333333321 13468999999999
Q ss_pred CHHHHHHHHHH
Q 046233 496 GTHEVISAAYQ 506 (518)
Q Consensus 496 GI~eL~~~L~e 506 (518)
|++++|++|.+
T Consensus 151 gv~~~~~~l~~ 161 (162)
T cd04157 151 GLDEGVQWLQA 161 (162)
T ss_pred chHHHHHHHhc
Confidence 99999999865
No 61
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=4.6e-20 Score=168.66 Aligned_cols=157 Identities=21% Similarity=0.168 Sum_probs=110.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccC-CCCCCCCcee-eeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ-PTIANYPFTT-LLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak-~~Ia~ypfTT-l~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
+|++||.+|||||||+++|.... .....|..|+ .+.....+.+. ....+.+|||||+..... + ...+++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~ 74 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSD----M---VSNYWE 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHH----H---HHHHhC
Confidence 79999999999999999998642 2234444333 22222223332 236899999999744221 2 234467
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHH-HHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSF-KEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel-~~~l~~~g~~i~~ISAktgeG 496 (518)
++|++++|+|+++..++..+..|...+.... ...|+++|+||+|+....+..... .......++++++|||+++.|
T Consensus 75 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (164)
T cd04101 75 SPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVG 151 (164)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 8999999999999888777777766665443 468999999999997654433322 223333467899999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 497 THEVISAAYQLL 508 (518)
Q Consensus 497 I~eL~~~L~e~L 508 (518)
+++++++|.+.+
T Consensus 152 i~~l~~~l~~~~ 163 (164)
T cd04101 152 YEEPFESLARAF 163 (164)
T ss_pred hHHHHHHHHHHh
Confidence 999999998764
No 62
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.84 E-value=6.3e-20 Score=175.74 Aligned_cols=162 Identities=16% Similarity=0.066 Sum_probs=115.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|||.+|||||||+++|.+........+..+.+.....+.++. ...+.||||||+.... ..+..++..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~ 78 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-------TITSTYYRG 78 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH-------HHHHHHhCC
Confidence 46899999999999999999998654322222222222223333332 2468999999975422 223445667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
++++|+|+|++++.++..+..|...+.... ...|++||+||+|+....... ++........+++++++||+++.||
T Consensus 79 a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi 155 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV 155 (199)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCH
Confidence 999999999999888777776666665432 468999999999997654332 3444455556789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|.+.+...
T Consensus 156 ~~lf~~l~~~~~~~ 169 (199)
T cd04110 156 EEMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887553
No 63
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=3.3e-20 Score=172.52 Aligned_cols=157 Identities=20% Similarity=0.139 Sum_probs=110.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|++... .. +.+|+......+.+. ...+.+|||||+.+. ...+..++..+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~-~~~i~l~Dt~G~~~~-------~~~~~~~~~~ad~ 69 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYK-NLKFTIWDVGGKHKL-------RPLWKHYYLNTQA 69 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEEC-CEEEEEEECCCChhc-------chHHHHHhccCCE
Confidence 588999999999999999998643 22 334554444445554 578999999998542 2234445677999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc------CCceEEEeccCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR------GIEPFCMSAVKRE 495 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~------g~~i~~ISAktge 495 (518)
++||+|++++.++.....+...+... ......|++||+||+|+.... ..+++.+.+... .+.+++|||+++.
T Consensus 70 ii~V~D~s~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 70 VVFVVDSSHRDRVSEAHSELAKLLTE-KELRDALLLIFANKQDVAGAL-SVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcC-hhhCCCCEEEEEeCcCcccCC-CHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 99999999987776665544444311 123458999999999997542 234444444321 2368899999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
||+++|+||.+.+...
T Consensus 148 gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 148 GLYEGLDWLSRQLVAA 163 (169)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999876553
No 64
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=5e-20 Score=164.34 Aligned_cols=155 Identities=16% Similarity=0.101 Sum_probs=113.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++........+.++.......+.... ...+.+||+||+..... .....++.+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS-------ITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH-------HHHHHhcCCC
Confidence 789999999999999999998876555444444444434444332 35789999999854222 2333456699
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC-CcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP-EAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~-~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++|+|+|++++.+...+..|...+.... ....|+++|+||+|+. ......+++.+......++++++||+++.|+++
T Consensus 75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 75 GAILVYDITNRESFENLDKWLKELKEYA--PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEE 152 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 9999999998777777666666555432 1468999999999996 332334556666666688999999999999999
Q ss_pred HHHHHH
Q 046233 500 VISAAY 505 (518)
Q Consensus 500 L~~~L~ 505 (518)
++.+|.
T Consensus 153 ~~~~i~ 158 (159)
T cd00154 153 LFQSLA 158 (159)
T ss_pred HHHHHh
Confidence 999986
No 65
>PRK15494 era GTPase Era; Provisional
Probab=99.84 E-value=3.4e-20 Score=192.96 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=117.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~Ier 418 (518)
.+|++||.||||||||+|+|++.+..+ .+.+.||.....+.+..+ +.++.+|||||+.+..+. ...+....+..+..
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~-~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~ 131 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK-DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHS 131 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC-CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhh
Confidence 489999999999999999999876643 577888888888888876 578999999998653221 11122233345788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC--CceEEEeccCCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG--IEPFCMSAVKREG 496 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g--~~i~~ISAktgeG 496 (518)
||++|||+|++......+ ..+...+.. .+.|.++|+||+|+... ....+.+.+.... ..++++||+++.|
T Consensus 132 aDvil~VvD~~~s~~~~~-~~il~~l~~-----~~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iSAktg~g 203 (339)
T PRK15494 132 ADLVLLIIDSLKSFDDIT-HNILDKLRS-----LNIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPISALSGKN 203 (339)
T ss_pred CCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence 999999999876322111 223344432 24688899999999653 2445555555443 5799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
+++|+++|.+.++.
T Consensus 204 v~eL~~~L~~~l~~ 217 (339)
T PRK15494 204 IDGLLEYITSKAKI 217 (339)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988764
No 66
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.84 E-value=6.2e-20 Score=169.35 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=111.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||++++..........+....+.....+.+.. ...+.+|||||+..... + ...++..+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~---~~~~~~~~~ 74 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT----I---TKQYYRRAQ 74 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh----h---HHHHhcCCc
Confidence 689999999999999999997654322222222222223344432 24688999999754222 2 223456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++++|+|++++.+++.+..|...+..+. ....|+++|+||+|+....... ++.....+..+++++++||+++.|+++
T Consensus 75 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 75 GIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999988888877777665443 2468999999999997654432 333333344578999999999999999
Q ss_pred HHHHHHHH
Q 046233 500 VISAAYQL 507 (518)
Q Consensus 500 L~~~L~e~ 507 (518)
+|.+|.+.
T Consensus 153 ~f~~l~~~ 160 (161)
T cd04117 153 SFTRLTEL 160 (161)
T ss_pred HHHHHHhh
Confidence 99999865
No 67
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=7.7e-21 Score=198.45 Aligned_cols=165 Identities=28% Similarity=0.360 Sum_probs=134.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhh---hcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEF---LRH 415 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~f---Lr~ 415 (518)
.++.|+|||++|||||||+|+|+++.....+..|+|++|+...+.+.++..+.+.||-|++..-... |...| |..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~--LV~AFksTLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP--LVEAFKSTLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChH--HHHHHHHHHHH
Confidence 5788999999999999999999999888899999999999999999878899999999999753321 33334 445
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktge 495 (518)
+..||+++||+|+|++...+.++.....|.... ...+|+|+|+||+|+........ .+.......+++||+++.
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~--~~~~p~i~v~NKiD~~~~~~~~~----~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIG--ADEIPIILVLNKIDLLEDEEILA----ELERGSPNPVFISAKTGE 342 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC--CCCCCEEEEEecccccCchhhhh----hhhhcCCCeEEEEeccCc
Confidence 678999999999999988888888888887554 35699999999999886544222 222221158999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
|++.|++.|.+.+...
T Consensus 343 gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 343 GLDLLRERIIELLSGL 358 (411)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999988743
No 68
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=7.4e-20 Score=166.83 Aligned_cols=159 Identities=18% Similarity=0.072 Sum_probs=112.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........+.+........+.++. ...+.+||+||+..... + ....++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~~ 74 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS----L---APMYYRGA 74 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH----H---HHHHhccC
Confidence 4799999999999999999998765332222221112222333432 24789999999754211 1 12235669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|++++.++.....|...+.... ....|+++|+||+|+..... ...+........++.++++||+++.|+.
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQRNA--SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVN 152 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 99999999998888777777766665432 25689999999999874322 3345555566667899999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
+++++|.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999999876
No 69
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.84 E-value=3.9e-20 Score=170.12 Aligned_cols=161 Identities=19% Similarity=0.168 Sum_probs=114.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|++||.+|||||||+++++.... ...|+.++.......+.++. ...+.+|||||+..... ....+.+..+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHHHHhCC
Confidence 589999999999999999987543 33454444322333334432 23688999999864111 12334566799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCC-CHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKRE-GTH 498 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktge-GI~ 498 (518)
++|+|+|+++..+++.+..|..++........+.|+++|+||+|+....... ++........+.+++++||+++. |++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~ 153 (165)
T cd04146 74 GFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVH 153 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHH
Confidence 9999999999988888887777777544323479999999999986543322 33334444557899999999995 999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
++|..|.+.+.
T Consensus 154 ~~f~~l~~~~~ 164 (165)
T cd04146 154 SVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999987664
No 70
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.84 E-value=7.4e-20 Score=166.10 Aligned_cols=160 Identities=17% Similarity=0.111 Sum_probs=112.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|+..... ..+..++.+.....+..+. ...+.+|||||+.+... +... .++.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~---~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA----IRDN---YHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH----HHHH---HhhcCC
Confidence 7899999999999999999976532 3444444333333333432 24799999999865321 2223 345589
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc-cchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++++|+|++++.++.....+...+..... ..++|+++|+||+|+.... .............+++++++||+++.|+++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 74 GFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHH
Confidence 99999999988777666666555543321 3579999999999997632 223344444555578999999999999999
Q ss_pred HHHHHHHHHHh
Q 046233 500 VISAAYQLLQK 510 (518)
Q Consensus 500 L~~~L~e~L~~ 510 (518)
++++|.+++.+
T Consensus 153 l~~~l~~~~~~ 163 (164)
T cd04139 153 AFYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999987753
No 71
>PLN03110 Rab GTPase; Provisional
Probab=99.84 E-value=8.3e-20 Score=177.76 Aligned_cols=163 Identities=13% Similarity=0.042 Sum_probs=120.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|++||.+|||||||+++|++........+....+.....+.++. ...+.||||||+.... ..+..+++.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ 84 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-------AITSAYYRG 84 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhCC
Confidence 45999999999999999999998766444444444444444455542 2478999999986522 223334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-HhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-QARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-~~~g~~i~~ISAktgeGI 497 (518)
++++|+|+|+++..+++.+..|...+..... .+.|+++|+||+|+........+....+ ...+++++++||+++.|+
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNV 162 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999998888887777766664432 4689999999999976544433333333 345789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|...+.+.
T Consensus 163 ~~lf~~l~~~i~~~ 176 (216)
T PLN03110 163 EKAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888664
No 72
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=1.1e-19 Score=171.56 Aligned_cols=161 Identities=16% Similarity=0.048 Sum_probs=115.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|+.........+..+.+.....+.++. ...+.+|||||+.... ..+...++.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~~~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR-------SLNNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------hhHHHHccCCC
Confidence 789999999999999999998765332233333333333344432 2467899999975421 12334567799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++|+|+|++++.++..+..|..++..+.. ...|+++|+||+|+.+..... ..........+++++++||+++.|+++
T Consensus 75 ~iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~ 152 (188)
T cd04125 75 GYLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEE 152 (188)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999998888888777777765432 358999999999998544332 233334444577999999999999999
Q ss_pred HHHHHHHHHHhh
Q 046233 500 VISAAYQLLQKN 511 (518)
Q Consensus 500 L~~~L~e~L~~~ 511 (518)
+|++|.+.+...
T Consensus 153 ~f~~l~~~~~~~ 164 (188)
T cd04125 153 AFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 73
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.83 E-value=1.1e-19 Score=170.01 Aligned_cols=162 Identities=12% Similarity=-0.034 Sum_probs=112.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|++||.+|||||||++++....+.-...|..........+.+.. ...+.||||||+..... ....+++.+
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~a 73 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC-------IASTYYRGA 73 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh-------hHHHHhcCC
Confidence 3789999999999999999998755322223222233333343332 24799999999865222 223346679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc--h-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK--W-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~--~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
|++|+|+|+++..++.....|..++..... ....|+++|+||+|+...... . +.........+.+++++||+++.|
T Consensus 74 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~ 152 (170)
T cd04108 74 QAIIIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGEN 152 (170)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999988787777776666543211 134689999999999654321 1 223333444567899999999999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
++++|+.|.+.+.+
T Consensus 153 v~~lf~~l~~~~~~ 166 (170)
T cd04108 153 VREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 74
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.83 E-value=6.8e-20 Score=167.64 Aligned_cols=159 Identities=17% Similarity=0.094 Sum_probs=111.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||++++....... .+..|........+.++. ...+.||||||+..... + +..+++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~a 73 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS----M---RDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECCEEEEEEEEECCCcccccc----h---HHHHHhhC
Confidence 378999999999999999999765432 232222222233344432 23578999999755322 2 22235669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|+++..++.+...|..++.... ...++|+++|+||+|+....... .+........+++++++||+++.|++
T Consensus 74 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 74 QGFIVVYSLVNQQTFQDIKPMRDQIVRVK-GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVN 152 (163)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHH
Confidence 99999999999888888877777766432 22578999999999996543322 22233333446789999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
++|.+|.+.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 75
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.83 E-value=1.5e-19 Score=165.93 Aligned_cols=163 Identities=20% Similarity=0.117 Sum_probs=111.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|.+........+..+.+.....+.+.. ...+.+||+||+.... ..+...++.||
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 789999999999999999998754322222222222223333432 2467899999975421 12334467799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHh-cCC-CCCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcC-CceEEEeccCCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEM-FSP-EIAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARG-IEPFCMSAVKREG 496 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~-~~~-~l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g-~~i~~ISAktgeG 496 (518)
++|+|+|++++.++.....|..++.. ..+ ...++|+++|+||+|+..... ..+.+...+...+ .+++++||+++.|
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAIN 154 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence 99999999988777666655554332 211 123689999999999984322 2344555555554 7899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
+++++++|.+.+.+.
T Consensus 155 v~~l~~~i~~~~~~~ 169 (172)
T cd01862 155 VEQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999876554
No 76
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=1.1e-19 Score=172.39 Aligned_cols=162 Identities=18% Similarity=0.088 Sum_probs=113.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||++++...... ..+..|+.......+.++. ...+.+|||||+.+... + +..++..+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----l---~~~~~~~~ 77 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA----M---RDQYMRTG 77 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh----h---HHHHhhcC
Confidence 58999999999999999999986542 2222222111222233332 24588999999865322 2 23345569
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+++|+|+|+++++++..+..|..++..+.. ..+.|+++|+||+|+....... .+........+++++++||+++.||+
T Consensus 78 d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~ 156 (189)
T PTZ00369 78 QGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVD 156 (189)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHH
Confidence 999999999999888888877777654432 2468999999999996543322 23334444457899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
++|.+|.+.+...
T Consensus 157 ~~~~~l~~~l~~~ 169 (189)
T PTZ00369 157 EAFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877543
No 77
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=4.1e-20 Score=166.28 Aligned_cols=154 Identities=23% Similarity=0.342 Sum_probs=112.2
Q ss_pred eeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc-cCCCcchhhhccccccCc
Q 046233 344 GIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH-QGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 344 ~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas-~~~gLg~~fLr~IerADv 421 (518)
+++|.+|||||||+++|++... .+..++.+|.......+.+. +..+.+|||||+.+... ....+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG-GREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC-CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 5899999999999999998753 34677888887777766665 47899999999876432 111123344556788999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCHHHH
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTHEV 500 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI~eL 500 (518)
+++|+|+.+........ +..++.. .+.|+++|+||+|+...... ...+...+. +++++||+++.|++++
T Consensus 80 ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 80 ILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999998755444432 3344442 35899999999999865332 223333444 7899999999999999
Q ss_pred HHHHHHHH
Q 046233 501 ISAAYQLL 508 (518)
Q Consensus 501 ~~~L~e~L 508 (518)
+++|.+.+
T Consensus 150 ~~~l~~~~ 157 (157)
T cd01894 150 LDAILELL 157 (157)
T ss_pred HHHHHhhC
Confidence 99998753
No 78
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7e-20 Score=174.73 Aligned_cols=168 Identities=16% Similarity=0.107 Sum_probs=129.6
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhc
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
+...+.||.|+|..|||||+|+.+++............-++.....+.++. ..+++||||+|+.+.. ..+..
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr-------tit~s 77 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR-------TITSS 77 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-------hhhHh
Confidence 455678999999999999999999998754332222223344444455542 2489999999997643 33556
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHH-HHHHhcCCc-eEEEecc
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFK-EKLQARGIE-PFCMSAV 492 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~-~~l~~~g~~-i~~ISAk 492 (518)
+++.|++||+|+|+++..++..+..|..++..+.. .+.|.++|+||+|+.+......+.. .+....+++ ++++|||
T Consensus 78 yYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 78 YYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred hccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccC
Confidence 67779999999999999999999999999987764 4689999999999998766544444 444455788 9999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 046233 493 KREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~~~ 512 (518)
.+.|+++.|..|...+....
T Consensus 156 ~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CccCHHHHHHHHHHHHHHhc
Confidence 99999999999998887643
No 79
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=7.5e-20 Score=168.89 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=104.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||++++...... . + .+|+......+.+. ...+.+|||||+... ...+..+++.||+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~-~-~pt~g~~~~~~~~~-~~~~~l~D~~G~~~~-------~~~~~~~~~~ad~ 70 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYK-NISFTVWDVGGQDKI-------RPLWRHYFQNTQG 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c-c-CCCCCcceEEEEEC-CEEEEEEECCCCHhH-------HHHHHHHhcCCCE
Confidence 7899999999999999999765432 2 2 22333333344444 578999999998542 1223445778999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktgeG 496 (518)
+|||+|+++..++.....++..+.. .......|++||+||+|+..... ..++...+. ...+.++++||++|.|
T Consensus 71 ~i~v~D~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 71 LIFVVDSNDRERIGEAREELQRMLN-EDELRDAVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHh-cHHhcCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999987776666544433321 12234689999999999965422 233333332 1244678999999999
Q ss_pred HHHHHHHHHH
Q 046233 497 THEVISAAYQ 506 (518)
Q Consensus 497 I~eL~~~L~e 506 (518)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 80
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.6e-19 Score=175.36 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=116.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++........+..+.+.....+.+.. ...+.+|||||+.... .....++..
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 75 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYYRN 75 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHhcC
Confidence 4899999999999999999998765433333333333333343322 2478999999975422 122334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|++++.++..+..|...+..... ....|++||+||+|+....... ++..+..+..+++++++||+++.||
T Consensus 76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v 154 (211)
T cd04111 76 SVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154 (211)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCH
Confidence 9999999999998888887777666654321 2356789999999997644432 3344444555789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|.+.+...
T Consensus 155 ~e~f~~l~~~~~~~ 168 (211)
T cd04111 155 EEAFELLTQEIYER 168 (211)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877654
No 81
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=6.4e-20 Score=174.41 Aligned_cols=161 Identities=22% Similarity=0.160 Sum_probs=123.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeec--eeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLP--NLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p--~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.||+|+|..+||||||+-++...++.-...+ |+.. ....+.++. ..+|.||||.|+.+.. +|.+.|+|.
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~--TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~----slapMYyRg-- 77 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEP--TIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH----SLAPMYYRG-- 77 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCcccccccc--ccccEEEEEEEEeCCcEEEEEEEEcCCccccc----ccccceecC--
Confidence 4889999999999999999987755321111 2211 112223331 2578899999997743 366777665
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
|+++|+|||+++.+++..++.|..+|+...+ .+.-+.+|+||+||.+.++ ..++...+....++.++++|||++.|
T Consensus 78 -A~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 78 -ANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred -CcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence 9999999999999999999999999985443 4556777999999997443 35677777777899999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 046233 497 THEVISAAYQLLQKNK 512 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~ 512 (518)
++++|..|.+.++...
T Consensus 155 v~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSD 170 (200)
T ss_pred HHHHHHHHHHhccCcc
Confidence 9999999999988654
No 82
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.83 E-value=2.1e-19 Score=166.80 Aligned_cols=162 Identities=19% Similarity=0.093 Sum_probs=115.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++++.........+..+.+.....+.++. ...+.+|||||+.+.... + +...++.+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~---~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS---M---VQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHh---h---HHHhhcCC
Confidence 5899999999999999999987654322223222233333444442 257899999997542110 1 22235679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH-HHHHHHhcCCceEEEeccC---CC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS-FKEKLQARGIEPFCMSAVK---RE 495 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee-l~~~l~~~g~~i~~ISAkt---ge 495 (518)
|++++|+|++++.++..+..|..++..+.. ....|+++|+||+|+......... ..+......++++++||++ +.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 77 HAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEND 155 (170)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCC
Confidence 999999999999888888887777765432 256899999999999765544333 3334444568999999999 89
Q ss_pred CHHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLLQ 509 (518)
Q Consensus 496 GI~eL~~~L~e~L~ 509 (518)
+|+++|..|.+.+.
T Consensus 156 ~i~~~f~~l~~~~~ 169 (170)
T cd04115 156 HVEAIFMTLAHKLK 169 (170)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999987663
No 83
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=1.1e-19 Score=163.87 Aligned_cols=157 Identities=17% Similarity=0.073 Sum_probs=115.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++.. ....+..++.+.....+.+.. ...+.+||+||+.... ......++.+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHHhcCC
Confidence 58999999999999999999865 344555555555444455542 2478999999976521 22334466799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
++++|+|++++.++..+..++..+..... ....|+++|+||+|+..... ..+.........+.+++++||+++.|+++
T Consensus 73 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 151 (160)
T cd00876 73 GFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDE 151 (160)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHH
Confidence 99999999998887777766666554322 14789999999999986332 23445555555668999999999999999
Q ss_pred HHHHHHHH
Q 046233 500 VISAAYQL 507 (518)
Q Consensus 500 L~~~L~e~ 507 (518)
++++|.+.
T Consensus 152 l~~~l~~~ 159 (160)
T cd00876 152 VFKLLVRE 159 (160)
T ss_pred HHHHHHhh
Confidence 99999865
No 84
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.83 E-value=9.9e-20 Score=170.26 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=108.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+++|.+|||||||+++|+..... .. .+|+..+...+.+. ...+.+|||||+.. +...+..+++.|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~l~D~~G~~~-------~~~~~~~~~~~~ 83 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV-HT--SPTIGSNVEEIVYK-NIRFLMWDIGGQES-------LRSSWNTYYTNT 83 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC-Cc--CCccccceEEEEEC-CeEEEEEECCCCHH-------HHHHHHHHhhcC
Confidence 358999999999999999999876532 22 33555555556655 57899999999854 223345567889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktg 494 (518)
|++|||+|+++..++.........+.. ...+..+|++||+||+|+.... ..+++.+.+. ...+++++|||+++
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~-~~~~~~~p~viv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLA-HEDLRKAVLLVLANKQDLKGAM-TPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHh-chhhcCCCEEEEEECCCCCCCC-CHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999987665544332222211 1223568999999999997532 2233444442 23457999999999
Q ss_pred CCHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQ 506 (518)
Q Consensus 495 eGI~eL~~~L~e 506 (518)
.||++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999964
No 85
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=9.3e-20 Score=169.60 Aligned_cols=153 Identities=23% Similarity=0.206 Sum_probs=106.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|++... ..+. .|.......+.++ ...+.+|||||+... ...+..+++.+|
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~--~~~~-~t~g~~~~~~~~~-~~~l~l~D~~G~~~~-------~~~~~~~~~~~d 83 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDI--DTIS-PTLGFQIKTLEYE-GYKLNIWDVGGQKTL-------RPYWRNYFESTD 83 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCC--CCcC-CccccceEEEEEC-CEEEEEEECCCCHHH-------HHHHHHHhCCCC
Confidence 4799999999999999999997633 1111 2222233344454 578999999998542 122344567799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktge 495 (518)
++++|+|+++..++.....+...+.. .....+.|++||+||+|+.... ..+++.+.+. ...++++++||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 99999999998776665444443322 1223579999999999997643 2344555443 235689999999999
Q ss_pred CHHHHHHHHHH
Q 046233 496 GTHEVISAAYQ 506 (518)
Q Consensus 496 GI~eL~~~L~e 506 (518)
|++++|++|.+
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999863
No 86
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.83 E-value=1.6e-19 Score=165.11 Aligned_cols=156 Identities=21% Similarity=0.194 Sum_probs=108.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
+.|+++|.+|||||||+++|+.........+++|.......+... ....+.+|||||+.... ..+...+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~~~ 73 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NMRARGASL 73 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HHHHHHHhh
Confidence 358999999999999999999877655555666766555555543 35689999999975421 122334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-c-hHHHHHHHH------hcCCceEEEe
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-K-WPSFKEKLQ------ARGIEPFCMS 490 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-~-~eel~~~l~------~~g~~i~~IS 490 (518)
+|++++|+|+++......+..+. .+.. .++|+++|+||+|+..... . ...+..... ...++++++|
T Consensus 74 ~d~il~v~d~~~~~~~~~~~~~~-~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T cd01887 74 TDIAILVVAADDGVMPQTIEAIK-LAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS 147 (168)
T ss_pred cCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence 99999999999865444444332 3332 4689999999999974321 1 111211111 1136899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 046233 491 AVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~ 509 (518)
|+++.|+++|+++|.+...
T Consensus 148 a~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 148 AKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccCCCHHHHHHHHHHhhh
Confidence 9999999999999988754
No 87
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=2.3e-19 Score=168.56 Aligned_cols=160 Identities=18% Similarity=0.105 Sum_probs=112.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
+|+++|.+|||||||+++|...... ..+..|+.......+... ....+.||||||+.+... + ...+++.|
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~a 73 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR----L---RPLSYPDV 73 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH----H---HHHhCCCC
Confidence 7899999999999999999987543 233333333333334333 124689999999755221 1 22245679
Q ss_pred CceEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-----chHHHHHHHHhcCC-ceEEEecc
Q 046233 420 SALVHVIDGSAEQPEFEFDA-VRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-----KWPSFKEKLQARGI-EPFCMSAV 492 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~-L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-----~~eel~~~l~~~g~-~i~~ISAk 492 (518)
|++|+|+|+++..+++.+.. |...+..+. .+.|+++|+||+|+..... ...+..+.....++ +++++||+
T Consensus 74 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 74 DVLLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 99999999999888877643 444444332 4689999999999975321 12344444555566 89999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 046233 493 KREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~~~ 512 (518)
++.|++++|..|.+.+....
T Consensus 151 ~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 151 TMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999998876654
No 88
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.82 E-value=9.9e-20 Score=171.42 Aligned_cols=155 Identities=26% Similarity=0.304 Sum_probs=111.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|++|||||||+++|++..+. ...+|..+..+.+.++ +..+.+|||||+.... ..+..++..++
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~-~~~~~l~D~~G~~~~~-------~~~~~~~~~ad 88 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIG-NIKFKTFDLGGHEQAR-------RLWKDYFPEVD 88 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEEC-CEEEEEEECCCCHHHH-------HHHHHHhccCC
Confidence 58999999999999999999986542 2234666777777776 5789999999975421 22344567799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh----------------cCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA----------------RGI 484 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~----------------~g~ 484 (518)
++++|+|+++..++.....+...+... ....+.|++||+||+|+.... ..+++.+.+.. ..+
T Consensus 89 ~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 89 GIVFLVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPGAV-SEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCCCc-CHHHHHHHhCcccccccccccccccCceeE
Confidence 999999999876655444333333211 223568999999999997532 23455555532 124
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
++++|||++++|++++|+||.+.+
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhhC
Confidence 689999999999999999998753
No 89
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=1.9e-19 Score=175.81 Aligned_cols=157 Identities=14% Similarity=0.040 Sum_probs=112.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceee--EEEec-CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLG--VVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg--~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.+|++||.+|||||||+++++.........+ |+..... .+..+ ....+.+|||||+..... +.. .++.
T Consensus 14 ~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~--tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~---~~~~ 84 (219)
T PLN03071 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LRD---GYYI 84 (219)
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCccCC--ccceeEEEEEEEECCeEEEEEEEECCCchhhhh----hhH---HHcc
Confidence 4899999999999999999987654322222 2222222 22222 235899999999865321 222 2356
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.++++|+|+|++++.++..+..|..++.... .+.|++||+||+|+.......+.+ ......++++++|||+++.||
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCH
Confidence 6999999999999988888877777776543 468999999999996433222333 444455789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|.+|.+.+..
T Consensus 161 ~~~f~~l~~~~~~ 173 (219)
T PLN03071 161 EKPFLYLARKLAG 173 (219)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999987754
No 90
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.82 E-value=9.2e-20 Score=166.00 Aligned_cols=153 Identities=25% Similarity=0.250 Sum_probs=104.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|+..... ...| |.......+.......+.+|||||+.. +...+..++..+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEK-------MRTVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHh-------HHHHHHHHhccCCE
Confidence 4889999999999999999987542 2222 332333445544456899999999754 22234455778999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH------hcCCceEEEeccCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ------ARGIEPFCMSAVKRE 495 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~------~~g~~i~~ISAktge 495 (518)
+|+|+|++++.++.....+...+.. .....+.|+++|+||+|+..... .+++...+. ..++++++|||+++.
T Consensus 71 iv~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 71 LVYVVDSSDEARLDESQKELKHILK-NEHIKGVPVVLLANKQDLPGALT-AEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHh-chhhcCCCEEEEEECcccccCcC-HHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999987665555444333321 12235799999999999964322 233333322 124578999999999
Q ss_pred CHHHHHHHHHH
Q 046233 496 GTHEVISAAYQ 506 (518)
Q Consensus 496 GI~eL~~~L~e 506 (518)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 91
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.82 E-value=2.8e-19 Score=169.52 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=112.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+++|||||+.++....+.. .|..|........+.++. ...+.||||+|+.+... +... +++.|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~----~~~~---~~~~a 73 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR----LRPL---SYRGA 73 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc----cchh---hcCCC
Confidence 479999999999999999999876532 232222222222233332 25789999999865322 2222 45679
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc-----------cchHHHHHHHHhcCC-ce
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-----------EKWPSFKEKLQARGI-EP 486 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-----------e~~eel~~~l~~~g~-~i 486 (518)
+++|+|+|++++.+++.+ ..|..++..+. .+.|++||+||+||.+.. ...++..++....+. .+
T Consensus 74 ~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 150 (176)
T cd04133 74 DVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY 150 (176)
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence 999999999999999887 56777776553 368999999999996532 112344444455566 59
Q ss_pred EEEeccCCCCHHHHHHHHHHHHH
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++|||+++.||+++|..|.+.+.
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EECCCCcccCHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=1.2e-19 Score=169.31 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=104.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|+...+. ...| |.......+... ...+.+|||||+.... ..+..++..||
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~a~ 78 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYK-NVKFNVWDVGGQDKIR-------PLWRHYYTGTQ 78 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEEEC-CEEEEEEECCCCHHHH-------HHHHHHhccCC
Confidence 48999999999999999999865432 2222 222333334443 5789999999985421 22333467799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktge 495 (518)
++|||+|+++..++.....+...+.. .....+.|++||+||+|+.... ..+++.+.+.. ..+.++++||++|.
T Consensus 79 ~ii~v~D~t~~~s~~~~~~~~~~~~~-~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 79 GLIFVVDSADRDRIDEARQELHRIIN-DREMRDALLLVFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHhc-CHhhcCCcEEEEEECcCCccCC-CHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 99999999997776655443333221 1123468999999999997532 23444444321 23578999999999
Q ss_pred CHHHHHHHHHH
Q 046233 496 GTHEVISAAYQ 506 (518)
Q Consensus 496 GI~eL~~~L~e 506 (518)
|++++|+||.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999964
No 93
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.82 E-value=5.1e-19 Score=167.22 Aligned_cols=159 Identities=13% Similarity=0.030 Sum_probs=111.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeee-ceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLL-PNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~-p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
+|+++|.+|||||||+++|+...+....|..|.-. .....+.++. ...+.+|||||+.+... +.. .++..+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~~---~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----MSR---IYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----hhH---hhcCCC
Confidence 79999999999999999999876644344433221 1122344432 13577999999754221 222 235579
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc----c-hHHHHHHHHhcCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE----K-WPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e----~-~eel~~~l~~~g~~i~~ISAktg 494 (518)
|++|+|+|+++..++..+..|...+.... .+.|+++|+||+|+..... . ..++.++....+++++++||+++
T Consensus 75 d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG 151 (193)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 99999999999888777666666665432 3689999999999864321 1 12344444555788999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 046233 495 EGTHEVISAAYQLLQK 510 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~ 510 (518)
.|+++|+++|.+.+.+
T Consensus 152 ~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 152 QNVDELFQKVAEDFVS 167 (193)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988754
No 94
>PLN03108 Rab family protein; Provisional
Probab=99.82 E-value=3.9e-19 Score=172.21 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=117.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|||.+|||||||+++|+.........+....+.....+.++. ...+.+|||||+.... .....++..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~~~ 78 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRG 78 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhcc
Confidence 46899999999999999999998765443333333333334455542 2468899999975422 123344567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|+++..++..+..|...+..+. ....|+++|+||+|+...... .++..+.++..+++++++||+++.|+
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNV 156 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999888777766665554332 246899999999999764332 34455556666889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|.++.+.+..
T Consensus 157 ~e~f~~l~~~~~~ 169 (210)
T PLN03108 157 EEAFIKTAAKIYK 169 (210)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 95
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=4.8e-19 Score=170.96 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=113.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|||.+|||||||+++|+...... ..+.++.+.....+.++. ...+.||||||+..... + ...+++.+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---~~~~~~~~ 86 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT----L---TSSYYRNA 86 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCC-cCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH----H---HHHHHhcC
Confidence 589999999999999999999865421 122222222223334432 24789999999865322 2 23345669
Q ss_pred CceEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDA-VRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~-L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
|++|+|+|+++.+++..+.. |..++..+.. ....|+++|+||+|+...... .++........++.++++||+++.|+
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v 165 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYST-NQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENV 165 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999888877754 4445554432 345799999999999754333 23344445556788999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|...+...
T Consensus 166 ~~l~~~l~~~~~~~ 179 (211)
T PLN03118 166 EQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=2.2e-19 Score=170.08 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=107.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|+..... .+ .+|...+...+.+. ...+.+|||||+... ...+..+++.||
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~--~~-~pt~g~~~~~~~~~-~~~~~i~D~~Gq~~~-------~~~~~~~~~~a~ 86 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV--TT-IPTIGFNVETVEYK-NISFTVWDVGGQDKI-------RPLWRHYFQNTQ 86 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc--cc-cCCcceeEEEEEEC-CEEEEEEECCCCHHH-------HHHHHHHhccCC
Confidence 48999999999999999999865431 12 22333333334444 578999999998542 223444567799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-----CCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-----GIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-----g~~i~~ISAktge 495 (518)
++|||+|+++.+++.....+...+.. .....+.|++||+||+|+..... .+++.+.+.-. .+.++++||++|+
T Consensus 87 ~iI~V~D~s~~~s~~~~~~~l~~~l~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 87 GLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHhc-CHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEEeccCCCCC
Confidence 99999999998776554433222211 12235789999999999976543 34555444322 2346689999999
Q ss_pred CHHHHHHHHHHHHHh
Q 046233 496 GTHEVISAAYQLLQK 510 (518)
Q Consensus 496 GI~eL~~~L~e~L~~ 510 (518)
||+++|+||.+.+..
T Consensus 165 gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 165 GLYEGLDWLSNNIAN 179 (181)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887654
No 97
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.82 E-value=6.7e-20 Score=191.76 Aligned_cols=153 Identities=32% Similarity=0.494 Sum_probs=123.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC----------------ceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD----------------STMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~----------------~~l~I~DTPGliegas~ 404 (518)
.+|+|||.||||||||+|+|++.+..+++|||||++|+.|++.+.+. .++.++||||++.+++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 47999999999999999999999988999999999999999988753 25999999999999999
Q ss_pred CCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhcCC-------------------------
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMFSP------------------------- 449 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~~~------------------------- 449 (518)
+.+++..|++++++||+++||||+.. .++..+++.+..||..++.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~~~~~~e~ 162 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKEAKAEL 162 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 99999999999999999999999853 2455566655555543210
Q ss_pred ---------------------------------CCCCCCEEEEEeCCCC--CCcccchHHHHHHHHhcCCceEEEeccC
Q 046233 450 ---------------------------------EIAEKPYIVAFNKMDL--PEAYEKWPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 450 ---------------------------------~l~~kPiIVVlNKiDL--~~~~e~~eel~~~l~~~g~~i~~ISAkt 493 (518)
-+..+|+++|+|+.|. .......+.+.+.+...+.+++++||+-
T Consensus 163 ~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~ 241 (364)
T PRK09601 163 ELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI 241 (364)
T ss_pred HHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 1236899999999985 2333445666666666678899999953
No 98
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.82 E-value=3.1e-19 Score=169.37 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=110.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.++||||||++++....+.....|....+.....+.++. ...+.||||+|+..... + +..++..||
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~----~---~~~~~~~a~ 74 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN----M---LPLVCNDAV 74 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH----h---hHHHCcCCC
Confidence 789999999999999999988654322222211222223344442 24789999999865322 2 223456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc------cchHHHHHHHHhcCCceEEEeccCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY------EKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~------e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
++++|+|++++.++..+..|..++..+.+ ...| ++|+||+|+.... ...++..+..+..+++++++||+++
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g 151 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHS 151 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCC
Confidence 99999999999888888777777765433 2456 6889999996311 1122333344455788999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
.|++++|++|.+.+...
T Consensus 152 ~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 152 INVQKIFKIVLAKAFDL 168 (182)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999877653
No 99
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=2.6e-19 Score=166.25 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=103.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCC---------------CCceeeeceeeEEEe----cCCceEEEEcCCCCcccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIAN---------------YPFTTLLPNLGVVSF----DYDSTMVVADLPGLLEGA 402 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~---------------ypfTTl~p~lg~v~~----~~~~~l~I~DTPGliega 402 (518)
+|++||.++||||||+++|++....+.. ...+|..+....+.+ .....+.+|||||+.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 6899999999999999999875322111 112233333222322 12356889999998652
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-Hh
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-QA 481 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-~~ 481 (518)
...+.+++..+|++|+|+|+++.....++..+...+. .++|+++|+||+|+..... ....+.+ +.
T Consensus 81 ------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~--~~~~~~~~~~ 146 (179)
T cd01890 81 ------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSADP--ERVKQQIEDV 146 (179)
T ss_pred ------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCCH--HHHHHHHHHH
Confidence 2334556778999999999998766666555543322 3689999999999864321 1122222 22
Q ss_pred cCC---ceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 482 RGI---EPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 482 ~g~---~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
.++ .++++||++|.|+++|+++|.+.++
T Consensus 147 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 147 LGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred hCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 233 5899999999999999999987753
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.82 E-value=2.7e-19 Score=169.04 Aligned_cols=162 Identities=21% Similarity=0.193 Sum_probs=108.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+++|.+|||||||+++++.... ...+|........-.+... ....+.+|||||+... ...+...++.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------RPLWKSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhH-------HHHHHHHhcc
Confidence 3799999999999999999987643 2223322222211122211 2357999999997542 1223344677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh--c----CCceEEEecc
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA--R----GIEPFCMSAV 492 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~--~----g~~i~~ISAk 492 (518)
||++|||+|+++..++.....+..++..+.. ..++|++||+||+|+..... .+++...+.. . .+++++|||+
T Consensus 76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~ 153 (183)
T cd04152 76 TDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALS-VSEVEKLLALHELSASTPWHVQPACAI 153 (183)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCC-HHHHHHHhCccccCCCCceEEEEeecc
Confidence 9999999999987766666555554443322 24689999999999974321 2333333321 1 2468899999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 046233 493 KREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~~~ 512 (518)
++.|+++++++|.+.+...+
T Consensus 154 ~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 154 IGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998886543
No 101
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.82 E-value=1.9e-19 Score=164.62 Aligned_cols=151 Identities=25% Similarity=0.247 Sum_probs=102.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|+..... . + .+|+......+.+. ...+.+|||||+... ...+..+++.||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~-------~~~~~~~~~~~~~ 69 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-T-T-IPTIGFNVETVTYK-NLKFQVWDLGGQTSI-------RPYWRCYYSNTDA 69 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-C-c-CCccCcCeEEEEEC-CEEEEEEECCCCHHH-------HHHHHHHhcCCCE
Confidence 5899999999999999999765432 2 1 23444444445543 578999999998652 2234455778999
Q ss_pred eEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCCC
Q 046233 422 LVHVIDGSAEQPEFEFDA-VRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKRE 495 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~-L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktge 495 (518)
+|+|+|+++..++..... +...++. ....++|++||+||+|+..... ..++...+.. .++++++|||+++.
T Consensus 70 ii~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (158)
T cd04151 70 IIYVVDSTDRDRLGTAKEELHAMLEE--EELKGAVLLVFANKQDMPGALS-EAEISEKLGLSELKDRTWSIFKTSAIKGE 146 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhc--hhhcCCcEEEEEeCCCCCCCCC-HHHHHHHhCccccCCCcEEEEEeeccCCC
Confidence 999999998655443322 2222221 1234789999999999975432 2334333321 13479999999999
Q ss_pred CHHHHHHHHHH
Q 046233 496 GTHEVISAAYQ 506 (518)
Q Consensus 496 GI~eL~~~L~e 506 (518)
|+++++++|.+
T Consensus 147 gi~~l~~~l~~ 157 (158)
T cd04151 147 GLDEGMDWLVN 157 (158)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 102
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=8.9e-20 Score=192.85 Aligned_cols=158 Identities=27% Similarity=0.336 Sum_probs=126.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCcccc--ccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA--HQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega--s~~~gLg~~fLr~Ie 417 (518)
+.|+|||.||||||||+|+|++.+..+ +++|++|.++..+...+. +..|.++||+|+.... .....+..+.+..++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-GREFILIDTGGLDDGDEDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc-CceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence 579999999999999999999988765 899999999999999987 5679999999998654 233345566677789
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC-CceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG-IEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g-~~i~~ISAktgeG 496 (518)
.||++|||+|....-+..+.. +...|.. ..+|+|+|+||+|-...++. ..+ +-..+ -.+++|||.+|.|
T Consensus 83 eADvilfvVD~~~Git~~D~~-ia~~Lr~-----~~kpviLvvNK~D~~~~e~~---~~e-fyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 83 EADVILFVVDGREGITPADEE-IAKILRR-----SKKPVILVVNKIDNLKAEEL---AYE-FYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCCEEEEEEcccCchhhhh---HHH-HHhcCCCCceEeehhhccC
Confidence 999999999998866665544 3344441 46999999999998643222 223 33344 3899999999999
Q ss_pred HHHHHHHHHHHHH
Q 046233 497 THEVISAAYQLLQ 509 (518)
Q Consensus 497 I~eL~~~L~e~L~ 509 (518)
+.+|++++.+.++
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999974
No 103
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=3.1e-19 Score=160.25 Aligned_cols=152 Identities=27% Similarity=0.257 Sum_probs=113.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCC-Ccchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGF-GLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~-gLg~~fLr~IerA 419 (518)
+|+++|.+|||||||+++|++... .+..++.+|.......+.+. ...+.+|||||+.+....-. ......+.++.++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG-GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC-CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 789999999999999999998764 34667888877766666655 56899999999865432100 0011234567789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++++|+|++++.+......+.. ...+|+++|+||+|+...... .......+++++||+++.|+++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSEL------LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCcccc------ccccCCCceEEEECCCCCCHHH
Confidence 99999999998777666554433 246899999999999865432 2223356899999999999999
Q ss_pred HHHHHHHHH
Q 046233 500 VISAAYQLL 508 (518)
Q Consensus 500 L~~~L~e~L 508 (518)
|+++|.+.+
T Consensus 148 l~~~l~~~~ 156 (157)
T cd04164 148 LKEALLELA 156 (157)
T ss_pred HHHHHHHhh
Confidence 999998765
No 104
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.81 E-value=4.4e-19 Score=166.83 Aligned_cols=156 Identities=14% Similarity=0.095 Sum_probs=108.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|++||.+|||||||++++....+. ..|..|........+.++. ...+.||||+|+.+... +... ++..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~~~~a 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR----LRPL---SYPQT 73 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh----hhhh---hcccC
Confidence 47999999999999999999986542 3333333222222333432 24788999999865321 2222 45569
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------------hHHHHHHHHhcC-C
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------------WPSFKEKLQARG-I 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------------~eel~~~l~~~g-~ 484 (518)
|++|+|+|++++.++..+. .|..++.... .+.|+|||+||+|+....+. .++..+..+..+ +
T Consensus 74 ~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 74 DVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 9999999999998888875 4666665443 36899999999998653211 112222333344 6
Q ss_pred ceEEEeccCCCCHHHHHHHHHHH
Q 046233 485 EPFCMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~ 507 (518)
.+++|||++|.|++++|+.+..+
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998874
No 105
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=4.3e-19 Score=164.02 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=106.7
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
|+++|.+|||||||++++....... .+..+........+.++. ...+.+|||||+.+... +.. ..+..+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE-DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR----LRP---LSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC-CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch----hch---hhcCCCCE
Confidence 5799999999999999999865432 232233222222333332 23689999999865322 222 23567999
Q ss_pred eEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------------hHHHHHHHHhcCC-ce
Q 046233 422 LVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------------WPSFKEKLQARGI-EP 486 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------------~eel~~~l~~~g~-~i 486 (518)
+|+|+|+++..+++.+. .|...+..+. .++|+++|+||+|+...... .++..++.+..+. .+
T Consensus 73 ~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 73 FLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999988877764 3555555432 47899999999999753211 1222334444554 89
Q ss_pred EEEeccCCCCHHHHHHHHHHHH
Q 046233 487 FCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L 508 (518)
++|||+++.|++++|+.|.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 106
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.81 E-value=5.5e-19 Score=173.59 Aligned_cols=156 Identities=20% Similarity=0.134 Sum_probs=109.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|++||.+|||||||+++|....+. . + .+|+...+....+. ...+.||||||+..... +... ++..+|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~-~-~-~~Tig~~~~~~~~~-~~~l~iwDt~G~e~~~~----l~~~---~~~~ad~ 70 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK-D-T-VSTVGGAFYLKQWG-PYNISIWDTAGREQFHG----LGSM---YCRGAAA 70 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-C-C-CCccceEEEEEEee-EEEEEEEeCCCcccchh----hHHH---HhccCCE
Confidence 7899999999999999999987643 1 2 22333333223332 35789999999855322 2233 3567999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC-------------------cccc-hHHHHHHHHh
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE-------------------AYEK-WPSFKEKLQA 481 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~-------------------~~e~-~eel~~~l~~ 481 (518)
+|+|+|++++.++..+..++..+.... ....|+|||+||+||.. .... .++...+.+.
T Consensus 71 ~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 71 VILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 999999999988888876665554322 24689999999999975 1121 2333333333
Q ss_pred cC--------------CceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 482 RG--------------IEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 482 ~g--------------~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
.+ +++++|||++|.||+++|..|.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 33 579999999999999999999977653
No 107
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=3.6e-19 Score=169.03 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=109.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+|+|.+|||||||+++|+...+.. .+..|........+..+. ...+.||||||+..... +.. .++..++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----l~~---~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ-VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----LRS---LSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-ccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----ccc---ccccCCC
Confidence 78999999999999999999865432 222222222222233332 25789999999855321 222 2356799
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------------hHHHHHHHHhcC-Cc
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------------WPSFKEKLQARG-IE 485 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------------~eel~~~l~~~g-~~ 485 (518)
++|+|+|++++.++.... .|...+... ..+.|++||+||+||...... .++..+.....+ ++
T Consensus 74 ~~ilv~dv~~~~sf~~~~~~~~~~i~~~---~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (189)
T cd04134 74 VIMLCFSVDSPDSLENVESKWLGEIREH---CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999998887765 355555533 246899999999999754321 112223333334 68
Q ss_pred eEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 486 PFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 486 i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+++|||+++.|++++|.+|.+.+...
T Consensus 151 ~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred EEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999887643
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.81 E-value=2.5e-19 Score=168.11 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=106.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|..... .. + .+|+......+.+. ...+.+|||||+.... ..+..+++.||
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~-~-~~t~~~~~~~~~~~-~~~l~l~D~~G~~~~~-------~~~~~~~~~ad 82 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-VT-T-IPTIGFNVETVTYK-NISFTVWDVGGQDKIR-------PLWRHYYTNTQ 82 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CC-c-CCccccceEEEEEC-CEEEEEEECCCChhhH-------HHHHHHhCCCC
Confidence 5899999999999999999975443 22 2 12333333334444 5789999999985522 22334467899
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktge 495 (518)
++|||+|++++.++.....+...+.. .....+.|++||+||+|+..... .+++.+.+. ...+.++++||++|.
T Consensus 83 ~ii~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 83 GLIFVVDSNDRDRIDEAREELHRMLN-EDELRDAVILVFANKQDLPDAMK-AAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhh-CHhhcCCcEEEEEeCcCcccCCC-HHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 99999999998776665544443321 11234689999999999975432 233333332 123457789999999
Q ss_pred CHHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLLQ 509 (518)
Q Consensus 496 GI~eL~~~L~e~L~ 509 (518)
|++++|+||.+.+.
T Consensus 161 gv~e~~~~l~~~~~ 174 (175)
T smart00177 161 GLYEGLTWLSNNLK 174 (175)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987753
No 109
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.81 E-value=1.6e-19 Score=164.28 Aligned_cols=152 Identities=24% Similarity=0.233 Sum_probs=107.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||++++++..+. ....|.......+.+. ...+.+|||||+.... ..+...+..+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEYK-NVSFTVWDVGGQDKIR-------PLWKHYYENTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEEC-CEEEEEEECCCChhhH-------HHHHHHhccCCE
Confidence 5899999999999999999987631 1233444444445554 5689999999986532 123344567999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktgeG 496 (518)
+++|+|++++.++.....+...+.... .....|+++|+||+|+.... ..+++.+.+.. ..++++++||+++.|
T Consensus 70 ~i~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 70 IIFVVDSSDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 999999998876666544444332221 13578999999999998643 23344444432 246899999999999
Q ss_pred HHHHHHHHHH
Q 046233 497 THEVISAAYQ 506 (518)
Q Consensus 497 I~eL~~~L~e 506 (518)
++++|++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 110
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.81 E-value=4.8e-19 Score=168.81 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=109.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|..+||||||+.++....+.. .|..|........+.++. ...+.||||+|+..... +.. .+++.|
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----l~~---~~~~~a 75 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPK-EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR----LRT---LSYPQT 75 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCc-CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh----hhh---hhccCC
Confidence 489999999999999999999765422 222222111111223331 25689999999865322 222 235679
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc------------c-hHHHHHHHHhcC-C
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE------------K-WPSFKEKLQARG-I 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e------------~-~eel~~~l~~~g-~ 484 (518)
|++|+|+|++++.+++.+. .|..++.... .+.|++||+||+||..... . .++..++....+ +
T Consensus 76 ~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 152 (191)
T cd01875 76 NVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV 152 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 9999999999999888875 4555555432 4689999999999975421 1 122233334445 5
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+++++||+++.||+++|.+|.+.+..
T Consensus 153 ~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 153 KYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 89999999999999999999987754
No 111
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=6.1e-19 Score=160.33 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=112.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc----hhhhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG----HEFLRH 415 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg----~~fLr~ 415 (518)
.+|+++|.+|+|||||+++|++.... ...++.+|.......+... +..+.+|||||+.+..+....+. ...+.+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD-GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC-CeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 47999999999999999999987543 3567777776665556655 46799999999876433222111 122345
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc-cchHHHHHHHHhc-----CCceEEE
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQAR-----GIEPFCM 489 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~~-----g~~i~~I 489 (518)
+..+|++++|+|++++.+......+ ..+.. .++|+++|+||+|+.... .....+.+.+... ..+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIA-GLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHH-HHHHh-----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 6789999999999987665544333 22221 358999999999997653 2223333333322 3689999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 046233 490 SAVKREGTHEVISAAYQL 507 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~ 507 (518)
||+++.|++++++++.++
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998865
No 112
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.81 E-value=4.2e-19 Score=162.78 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=103.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|++........+ +..+.....+... ....+.+|||||+.+... +.. ..++.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----~~~---~~~~~~~ 73 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----LRP---LSYPNTD 73 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccccc----cch---hhcCCCC
Confidence 789999999999999999998764222222 2221111222222 134799999999875321 111 1246799
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc------------hHHHHHHHHhcCC-ce
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK------------WPSFKEKLQARGI-EP 486 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~------------~eel~~~l~~~g~-~i 486 (518)
++++|+|++++.++.... .|...+..+. .++|+++|+||+|+...... .++..+.....++ ++
T Consensus 74 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 74 VFLICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 999999999876665543 2444444332 37999999999999865432 2233344444555 89
Q ss_pred EEEeccCCCCHHHHHHHHHH
Q 046233 487 FCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e 506 (518)
+++||+++.|+++++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 113
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=5.3e-19 Score=163.47 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=105.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe-cCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF-DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~-~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|++||.+|||||||+++|...... ..++.+ .....-...+ .....+.+|||||..... ..+...+..+|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDR-------ANLAAEIRKAN 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhh-------HHHhhhcccCC
Confidence 7899999999999999999986542 223322 2111111122 223578999999975421 12344467799
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc--hHH-HHHHHHhc-C-CceEEEeccCC
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK--WPS-FKEKLQAR-G-IEPFCMSAVKR 494 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~--~ee-l~~~l~~~-g-~~i~~ISAktg 494 (518)
++++|+|++++.++..+. .|...++... ...|+++|+||+|+.+.... .++ +....... . .+++++||+++
T Consensus 73 ~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 73 VICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccc
Confidence 999999999988877754 4555555433 36899999999999765432 112 21112222 2 37999999999
Q ss_pred CCHHHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQLL 508 (518)
Q Consensus 495 eGI~eL~~~L~e~L 508 (518)
.|++++|+.+.+.+
T Consensus 150 ~~v~~lf~~~~~~~ 163 (166)
T cd01893 150 INVSEVFYYAQKAV 163 (166)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 114
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=2.6e-19 Score=169.45 Aligned_cols=155 Identities=23% Similarity=0.237 Sum_probs=110.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
-.+|+++|.+|||||||+++|++.... .+ .+|..+....+.+. +.++.+|||||+.... ..+..++..+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~~~D~~G~~~~~-------~~~~~~~~~a 85 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIG-NIKFTTFDLGGHQQAR-------RLWKDYFPEV 85 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEEC-CEEEEEEECCCCHHHH-------HHHHHHhCCC
Confidence 358999999999999999999986542 22 34566666666665 5789999999985421 2234456789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh------------cCCceE
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA------------RGIEPF 487 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~------------~g~~i~ 487 (518)
|++|||+|++++.++.....+...+.. .....++|++||+||+|+.... ..+++.+.+.. ..+.++
T Consensus 86 d~ii~vvD~~~~~~~~~~~~~l~~l~~-~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 86 NGIVYLVDAYDKERFAESKRELDALLS-DEELATVPFLILGNKIDAPYAA-SEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHc-ChhhcCCCEEEEEeCccccCCC-CHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999987666555443333321 1223578999999999997532 23445544421 234699
Q ss_pred EEeccCCCCHHHHHHHHHHH
Q 046233 488 CMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~ 507 (518)
+|||+++.|++++++||.+.
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999764
No 115
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=5.9e-19 Score=174.83 Aligned_cols=159 Identities=15% Similarity=0.089 Sum_probs=112.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|++||.++||||||+++++...+. ..|..|........+.++ ....+.||||+|+..... +. ..++..|
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~----~~---~~~~~~a 85 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN----VR---PLCYSDS 85 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCCC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH----HH---HHHcCCC
Confidence 48999999999999999999976543 223222221111123332 135799999999754221 22 2346679
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------cc-chHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEA------------YE-KWPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~------------~e-~~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.++... ..|..++..+. ...|+|||+||+||... .. ..++..++.+..++
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~ 162 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCC
Confidence 999999999999988874 66777776543 35799999999999642 11 23445555566677
Q ss_pred ceEEEeccCCC-CHHHHHHHHHHHHHh
Q 046233 485 EPFCMSAVKRE-GTHEVISAAYQLLQK 510 (518)
Q Consensus 485 ~i~~ISAktge-GI~eL~~~L~e~L~~ 510 (518)
.+++|||+++. ||+++|..|...+..
T Consensus 163 ~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred EEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 69999999998 899999999887654
No 116
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5e-19 Score=188.07 Aligned_cols=164 Identities=22% Similarity=0.302 Sum_probs=121.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc----hhhhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG----HEFLRH 415 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg----~~fLr~ 415 (518)
.+|+++|.+|||||||+++|++... .+.++++||.++....+.++ +..+.+|||||+.+..+....+. ...+++
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~ 251 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN-GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKA 251 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC-CcEEEEEECCCccccccchhhHHHHHHHHHHHH
Confidence 5899999999999999999998764 35788999998877777765 46899999999866443221111 122456
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-----CCceEEEe
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-----GIEPFCMS 490 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-----g~~i~~IS 490 (518)
++.||++|+|+|+++..+..+...+..... .++|+++|+||+|+....+..+.+.+.+... .++++++|
T Consensus 252 ~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S 325 (429)
T TIGR03594 252 IERADVVLLVLDATEGITEQDLRIAGLILE------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS 325 (429)
T ss_pred HHhCCEEEEEEECCCCccHHHHHHHHHHHH------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence 788999999999998877766654433222 3689999999999983222233444444322 46899999
Q ss_pred ccCCCCHHHHHHHHHHHHHhh
Q 046233 491 AVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~~~ 511 (518)
|++|.|+++++++|.+.+...
T Consensus 326 A~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 326 ALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999877643
No 117
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=6.9e-19 Score=166.58 Aligned_cols=156 Identities=17% Similarity=0.099 Sum_probs=110.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.++||||||++++....+. ..|..|........+.++. ...+.||||+|+..... +.. .+++.|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~----~~~---~~~~~a 73 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN----VRP---LCYPDS 73 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh----cch---hhcCCC
Confidence 37999999999999999999987543 2333222222222233332 25789999999854322 222 235679
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------ccc-hHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEA------------YEK-WPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~------------~e~-~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.+++.+ ..|..++..+. ...|+++|+||+||... ... .++..+..+..++
T Consensus 74 ~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~ 150 (178)
T cd04131 74 DAVLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence 999999999999999885 67777777654 36899999999999641 111 2344455555675
Q ss_pred ceEEEeccCCCC-HHHHHHHHHHH
Q 046233 485 EPFCMSAVKREG-THEVISAAYQL 507 (518)
Q Consensus 485 ~i~~ISAktgeG-I~eL~~~L~e~ 507 (518)
++++|||++++| |+++|..+.+.
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999999884
No 118
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5.3e-19 Score=170.44 Aligned_cols=163 Identities=15% Similarity=0.065 Sum_probs=127.7
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.+.+|++||.++||||+|+.+++...+........-++.....+.++. ...+++|||.|+.++.. .+-.+++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t-------i~~sYyr 83 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT-------ITTAYYR 83 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH-------HHHHHHh
Confidence 456899999999999999999998765433322223444555555553 24789999999977433 3555677
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHH-HHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKE-KLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~-~l~~~g~~i~~ISAktgeG 496 (518)
.|..+++|||+++..+++.+..|..++..+.+ ...|+++|+||+|+.....+..+..+ +....++.++++||+++.|
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~--~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHAS--DDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC--CCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 79999999999999999999889888887765 37899999999999986665444444 4445699999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
|++.|..|.+.+..
T Consensus 162 I~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 162 IEEAFLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 119
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.81 E-value=7.2e-20 Score=185.45 Aligned_cols=152 Identities=34% Similarity=0.540 Sum_probs=118.2
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCc----------------eEEEEcCCCCccccccCC
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDS----------------TMVVADLPGLLEGAHQGF 406 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~----------------~l~I~DTPGliegas~~~ 406 (518)
|+|||.||||||||+|+|++.+..+++|||||++|+.|++.+.+.. ++.++|+||+.++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 6899999999999999999999989999999999999999887432 599999999999999999
Q ss_pred CcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhcCC---------------------------
Q 046233 407 GLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMFSP--------------------------- 449 (518)
Q Consensus 407 gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~~~--------------------------- 449 (518)
+++..|+.++++||++++|||+.. .++..+++.+..||..++.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~~~~~~e~~~ 160 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELEL 160 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999999999999999999853 1455555555555443210
Q ss_pred -------------------------------CCCCCCEEEEEeCCC--CCCcccchHHHHHHHHhcCCceEEEeccCC
Q 046233 450 -------------------------------EIAEKPYIVAFNKMD--LPEAYEKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 450 -------------------------------~l~~kPiIVVlNKiD--L~~~~e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
-+..+|+++|+|+.| +.........+.......+.+++++||+--
T Consensus 161 l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E 238 (274)
T cd01900 161 LEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIE 238 (274)
T ss_pred HHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence 112489999999998 433333333444444445778999999643
No 120
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.81 E-value=6e-19 Score=165.75 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=105.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+.+++..... ..|..|........+.++. ...+.||||||+..... +... ++..+|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~---~~~~~d 74 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----LRPL---SYPQTD 74 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh----hhhh---hcCCCC
Confidence 7899999999999999999975432 2333222221111223331 24788999999754321 2222 356799
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc------------c-hHHHHHHHHhcC-Cc
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE------------K-WPSFKEKLQARG-IE 485 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e------------~-~eel~~~l~~~g-~~ 485 (518)
++|+|+|+++++++..+. .|...+.... .+.|++||+||+|+..... . .++..+.....+ ++
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 151 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 151 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 999999999988888774 4555555432 4689999999999964321 1 122333334445 48
Q ss_pred eEEEeccCCCCHHHHHHHHHHH
Q 046233 486 PFCMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 486 i~~ISAktgeGI~eL~~~L~e~ 507 (518)
+++|||+++.|++++|+.|.+.
T Consensus 152 ~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 152 YLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEecccccCCHHHHHHHHHHh
Confidence 9999999999999999998764
No 121
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.80 E-value=7.9e-19 Score=167.14 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=111.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|++||.++||||||++++....+. ..|..|........+.++. ...+.||||+|+.+... +. ..+++.|
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~----~~---~~~~~~a 77 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----VR---PLSYPDS 77 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh----hh---hhhcCCC
Confidence 48999999999999999999986542 2333222222222233332 24799999999855322 22 2245679
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------ccc-hHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEA------------YEK-WPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~------------~e~-~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.++..+ ..|..++..+. ...|++||+||+||... ... .++..+..+..++
T Consensus 78 d~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 154 (182)
T cd04172 78 DAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAA 154 (182)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence 999999999999998886 67777777654 36899999999999641 112 2445555556674
Q ss_pred ceEEEeccCCCC-HHHHHHHHHHH
Q 046233 485 EPFCMSAVKREG-THEVISAAYQL 507 (518)
Q Consensus 485 ~i~~ISAktgeG-I~eL~~~L~e~ 507 (518)
++++|||+++.| |+++|..+.+.
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHH
Confidence 899999999998 99999998874
No 122
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=4.1e-19 Score=158.78 Aligned_cols=153 Identities=25% Similarity=0.293 Sum_probs=104.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|++........| |.......+..+ ...+.+|||||+... ...+..++..+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~ 70 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKG-NVTLKVWDLGGQPRF-------RSMWERYCRGVNA 70 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEEC-CEEEEEEECCCCHhH-------HHHHHHHHhcCCE
Confidence 489999999999999999998765433333 333333444444 468999999997542 2234455678999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktgeG 496 (518)
+++|+|+++...+.....+...+.. ......+|+++|+||+|+..... ...+...+. ...++++++||+++.|
T Consensus 71 ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (159)
T cd04159 71 IVYVVDAADRTALEAAKNELHDLLE-KPSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSISCKEKTN 148 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHc-ChhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEEEeccCCC
Confidence 9999999986655544333333221 12235789999999999876432 222322221 1245789999999999
Q ss_pred HHHHHHHHHH
Q 046233 497 THEVISAAYQ 506 (518)
Q Consensus 497 I~eL~~~L~e 506 (518)
+++++++|.+
T Consensus 149 i~~l~~~l~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred hHHHHHHHhh
Confidence 9999999975
No 123
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.80 E-value=6.5e-19 Score=164.24 Aligned_cols=163 Identities=15% Similarity=0.090 Sum_probs=113.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|+..... ..+..++.......+.+.. ...+.+|||||+.+.. ......+..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV-ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS-------ILPQKYSIGI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH-------HHHHHHHhhC
Confidence 37999999999999999999986543 2233333333333344331 2467899999975421 1122345669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+++++|+|+++..+++....++..+.... ...+.|+|+|+||+|+...... ...........+++++++||+++.|+.
T Consensus 74 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 152 (180)
T cd04137 74 HGYILVYSVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVE 152 (180)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999888777776655554321 2346899999999999753332 223344444556789999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 046233 499 EVISAAYQLLQKNK 512 (518)
Q Consensus 499 eL~~~L~e~L~~~~ 512 (518)
+++.+|.+.+....
T Consensus 153 ~l~~~l~~~~~~~~ 166 (180)
T cd04137 153 EAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998887543
No 124
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=7.7e-19 Score=163.89 Aligned_cols=160 Identities=18% Similarity=0.131 Sum_probs=108.7
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeee-ceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLL-PNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~-p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
.+.+|+++|.+|||||||++++++..+.+..|..|+.. .....+.++.. ..+.+||++|...... + ...++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----~---~~~~~ 75 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL----L---NDAEL 75 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc----c---chhhh
Confidence 45799999999999999999999876542444443322 22233444422 4688999999865321 2 23345
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCC-ceEEEeccCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGI-EPFCMSAVKR 494 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~-~i~~ISAktg 494 (518)
+.||++|+|+|++++.++..+..|...+. . ..+.|+++|+||+|+...... .....+..+..++ .++++||+++
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~~---~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKYF---M-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHhc---c-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 77999999999998766555544444332 1 236899999999999654322 1122233333444 4699999999
Q ss_pred CCHHHHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQLLQ 509 (518)
Q Consensus 495 eGI~eL~~~L~e~L~ 509 (518)
.|++++|+.|.+.+.
T Consensus 152 ~~v~~lf~~l~~~~~ 166 (169)
T cd01892 152 DSSNELFTKLATAAQ 166 (169)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998764
No 125
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.80 E-value=9.1e-19 Score=171.31 Aligned_cols=161 Identities=20% Similarity=0.142 Sum_probs=113.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceee-eceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTL-LPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl-~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
+|+++|.+|||||||+++|+........++.+.. +.....+.++. ...+.+|||||+.. .+...++++ .+
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~~~~~~~--~a 73 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM------WTEDSCMQY--QG 73 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch------HHHhHHhhc--CC
Confidence 7899999999999999999865543223322211 22223333322 35789999999851 012223321 69
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|++++.++.....|..++..... ...+|+|+|+||+|+....... ++..+.....+++++++||+++.||+
T Consensus 74 d~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~ 152 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999998888877777776665432 3579999999999997654432 22333444457899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
++|++|.+.+...
T Consensus 153 ~l~~~l~~~~~~~ 165 (221)
T cd04148 153 ELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988643
No 126
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=9.7e-19 Score=189.35 Aligned_cols=164 Identities=24% Similarity=0.323 Sum_probs=121.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhh-----
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFL----- 413 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fL----- 413 (518)
..+|++||.||||||||+++|++... .+..+++||.++....+.++ +..+.||||||+.+..... .+..++
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~-~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~~ 287 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG-GKTWRFVDTAGLRRRVKQA--SGHEYYASLRT 287 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC-CEEEEEEECCCcccccccc--chHHHHHHHHH
Confidence 46999999999999999999998765 45788999998887777776 5688999999986532211 122222
Q ss_pred -ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHHhc-CCceEE
Q 046233 414 -RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQAR-GIEPFC 488 (518)
Q Consensus 414 -r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~~~-g~~i~~ 488 (518)
.+++.||++|+|+|+++..+..+...+..... .++|+|||+||+|+...... ..++.+.+... ..++++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 361 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVN 361 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEE
Confidence 34678999999999999888777654433222 46899999999999753221 11222223222 368999
Q ss_pred EeccCCCCHHHHHHHHHHHHHhhh
Q 046233 489 MSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
|||++|.||+++|..|.+.++...
T Consensus 362 ~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 362 ISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
No 127
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=6.5e-19 Score=166.84 Aligned_cols=157 Identities=20% Similarity=0.171 Sum_probs=106.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||++++...... . +. +|.......+... ...+.+|||||+... ...+..+++.||
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~-~~-~T~~~~~~~~~~~-~~~~~l~D~~G~~~~-------~~~~~~~~~~ad 86 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-T-TI-PTIGFNVETVEYK-NLKFTMWDVGGQDKL-------RPLWRHYYQNTN 86 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-cC-CccccceEEEEEC-CEEEEEEECCCCHhH-------HHHHHHHhcCCC
Confidence 58999999999999999999765332 2 22 2333444445543 578999999998542 222344567799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktge 495 (518)
++|||+|++++.++.....+...+.. .......|++||+||+|+..... ..++...+.. ..+.++++||++|.
T Consensus 87 ~iI~v~D~t~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 87 GLIFVVDSNDRERIGDAREELERMLS-EDELRDAVLLVFANKQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHh-CHhhcCCCEEEEEeCCCCCCCCC-HHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 99999999987766655433332211 11234689999999999975432 2333333322 12456789999999
Q ss_pred CHHHHHHHHHHHHHh
Q 046233 496 GTHEVISAAYQLLQK 510 (518)
Q Consensus 496 GI~eL~~~L~e~L~~ 510 (518)
|++++|+||.+.+..
T Consensus 165 gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 165 GLYEGLDWLSANIKK 179 (182)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987654
No 128
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.9e-19 Score=180.51 Aligned_cols=160 Identities=26% Similarity=0.379 Sum_probs=121.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCC-c---chhhhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFG-L---GHEFLRH 415 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~g-L---g~~fLr~ 415 (518)
++.|++.|+||||||||+++|++++|.+++|||||...++|.+.++ ..+++++||||+.+..-..+. + .-..|+|
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~-~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG-YLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC-CceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999987 579999999999875432211 1 1123566
Q ss_pred ccccCceEEEEeCCCC--CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC-CceEEEecc
Q 046233 416 TERCSALVHVIDGSAE--QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG-IEPFCMSAV 492 (518)
Q Consensus 416 IerADvlL~VVDaS~~--~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g-~~i~~ISAk 492 (518)
+ .++++|++|.|.. -+.+.-..|+.+++.. ...|+++|+||+|+..... .+++...+...+ ...+.+|+.
T Consensus 247 l--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~----f~~p~v~V~nK~D~~~~e~-~~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 247 L--AGVILFLFDPSETCGYSLEEQISLLEEIKEL----FKAPIVVVINKIDIADEEK-LEEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred h--cCeEEEEEcCccccCCCHHHHHHHHHHHHHh----cCCCeEEEEecccccchhH-HHHHHHHHHhhccccccceeee
Confidence 6 7899999999873 3444444455555522 3489999999999985533 344444444443 347889999
Q ss_pred CCCCHHHHHHHHHHH
Q 046233 493 KREGTHEVISAAYQL 507 (518)
Q Consensus 493 tgeGI~eL~~~L~e~ 507 (518)
.+.+++.+...+...
T Consensus 320 ~~~~~d~~~~~v~~~ 334 (346)
T COG1084 320 KGCGLDKLREEVRKT 334 (346)
T ss_pred ehhhHHHHHHHHHHH
Confidence 999999988888776
No 129
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.80 E-value=1.2e-18 Score=161.15 Aligned_cols=158 Identities=19% Similarity=0.151 Sum_probs=110.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||++++.+... ...+..|+.......+.++. ...+.+|||||+..... +... .++.++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~---~~~~~~ 74 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA----MREL---YIKSGQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh----hhHH---HHhhCC
Confidence 789999999999999999997653 23333333222222333332 24789999999765322 2233 345689
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcC-CceEEEeccCCCCHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARG-IEPFCMSAVKREGTH 498 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g-~~i~~ISAktgeGI~ 498 (518)
++|+|+|++++.+++....|..++.... ...+.|+++|+||+|+....... +......+..+ ++++++||+++.|++
T Consensus 75 ~~vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~ 153 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence 9999999999888888777766665422 23478999999999997544322 23333333444 689999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
++|++|...+
T Consensus 154 ~~f~~i~~~~ 163 (168)
T cd04177 154 EVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 130
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.80 E-value=5.1e-19 Score=164.62 Aligned_cols=152 Identities=24% Similarity=0.212 Sum_probs=106.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
.|+++|.+|||||||+++|++... .. ...|+......+.+. ...+.+|||||+.. +...+..+++.||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~-~~~t~g~~~~~~~~~-~~~~~i~D~~G~~~-------~~~~~~~~~~~a~~ 69 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KK-VAPTVGFTPTKLRLD-KYEVCIFDLGGGAN-------FRGIWVNYYAEAHG 69 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--cc-ccCcccceEEEEEEC-CEEEEEEECCCcHH-------HHHHHHHHHcCCCE
Confidence 378999999999999999997521 11 223333334445554 57899999999754 22335566788999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-----H-hc--CCceEEEeccC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-----Q-AR--GIEPFCMSAVK 493 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-----~-~~--g~~i~~ISAkt 493 (518)
+|||+|+++..++.....+...+... ....++|++||+||+|+...... .++.+.+ . .. .+.+++|||++
T Consensus 70 ii~V~D~s~~~s~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~~~~~-~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 70 LVFVVDSSDDDRVQEVKEILRELLQH-PRVSGKPILVLANKQDKKNALLG-ADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHcC-ccccCCcEEEEEeCCCCcCCCCH-HHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 99999999987776665555544322 22357899999999999765432 2222221 1 11 35788899999
Q ss_pred C------CCHHHHHHHHHH
Q 046233 494 R------EGTHEVISAAYQ 506 (518)
Q Consensus 494 g------eGI~eL~~~L~e 506 (518)
| .||++.|+||.+
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999974
No 131
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.80 E-value=1e-18 Score=174.39 Aligned_cols=160 Identities=16% Similarity=0.092 Sum_probs=114.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|++||.+|||||||+++++...+. ..|..|+.+.....+.++. ...+.||||+|+..... + ...++..+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~----~---~~~~~~~ad 73 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA----M---RRLSILTGD 73 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----H---HHHHhccCC
Confidence 6899999999999999999876543 2343333333444445442 24688999999754221 1 112356799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcC-------CCCCCCCEEEEEeCCCCCCcc-cchHHHHHHHHh-cCCceEEEec
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFS-------PEIAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQA-RGIEPFCMSA 491 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~-------~~l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~-~g~~i~~ISA 491 (518)
++|+|+|+++.++++.+..|..++.... ....++|+|||+||+|+.... ...+++.+.+.. ..+.++++||
T Consensus 74 ~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSA 153 (247)
T cd04143 74 VFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSA 153 (247)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeC
Confidence 9999999999988888887777775431 123578999999999997532 234455555543 2578999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 046233 492 VKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 492 ktgeGI~eL~~~L~e~L~ 509 (518)
+++.||+++|++|.+.+.
T Consensus 154 ktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 154 KKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999998763
No 132
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=2e-18 Score=159.51 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=106.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++++..... ..+..+........+.++. ...+.+|||||+..... +.. ..+..+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~---~~~~~~~ 73 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----LRP---LSYPMTD 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----ccc---ccCCCCC
Confidence 7899999999999999999986542 2233333222222344432 23578999999755322 112 2356789
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------------hHHHHHHHHhcCC-c
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------------WPSFKEKLQARGI-E 485 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------------~eel~~~l~~~g~-~ 485 (518)
++|+|+|++++.+++.+. .|...+... ..+.|+++|+||+|+...... .++.....+..++ +
T Consensus 74 ~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 74 VFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999988877764 455555543 357899999999998643211 1223333444454 7
Q ss_pred eEEEeccCCCCHHHHHHHHHHHH
Q 046233 486 PFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 486 i~~ISAktgeGI~eL~~~L~e~L 508 (518)
+++|||+++.|++++|+.+.+.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 133
>PRK04213 GTP-binding protein; Provisional
Probab=99.80 E-value=7.7e-19 Score=167.26 Aligned_cols=162 Identities=26% Similarity=0.219 Sum_probs=106.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc--c-----cCCCcchhhh
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA--H-----QGFGLGHEFL 413 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega--s-----~~~gLg~~fL 413 (518)
.+|+++|.+|||||||+++|++........|++|..+.. +.+. .+.+|||||+.... . ..+.+...++
T Consensus 10 ~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 10 PEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG---DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec---ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 589999999999999999999987777778888876543 2322 69999999963211 0 0001112223
Q ss_pred c-cccccCceEEEEeCCCCCCH----------HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc-cchHHHHHHHHh
Q 046233 414 R-HTERCSALVHVIDGSAEQPE----------FEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQA 481 (518)
Q Consensus 414 r-~IerADvlL~VVDaS~~~s~----------e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~ 481 (518)
+ ++..++++++|+|.+..... .....+...+.. .++|++||+||+|+.... +..+++.+.+..
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-----LGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-----cCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 2 45567899999998753211 011222333331 368999999999997543 122333333321
Q ss_pred c------CCceEEEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 482 R------GIEPFCMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 482 ~------g~~i~~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
. +.+++++||+++ ||++++++|.+.+...++
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 0 125899999999 999999999998876543
No 134
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=8.1e-19 Score=177.74 Aligned_cols=162 Identities=25% Similarity=0.336 Sum_probs=116.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~IerA 419 (518)
.|+|+|.||||||||+|+|++.+.. +.+.+.||.....+++..+ +.++.++||||+....+. +..+.......+..+
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999998764 4677888887777766654 479999999998654321 111223344567889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc--CCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR--GIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~--g~~i~~ISAktgeGI 497 (518)
|++++|+|+++.... ....+...+. ....|+++|+||+|+...........+.+... ..+++++||+++.|+
T Consensus 86 D~il~vvd~~~~~~~-~~~~i~~~l~-----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 86 DLVLFVVDADEKIGP-GDEFILEKLK-----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred CEEEEEEeCCCCCCh-hHHHHHHHHh-----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 999999999883332 2233334443 13589999999999984323333344444332 358999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
++|+++|.+.++.
T Consensus 160 ~~L~~~L~~~l~~ 172 (292)
T PRK00089 160 DELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988754
No 135
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=2.2e-18 Score=164.75 Aligned_cols=159 Identities=16% Similarity=0.052 Sum_probs=110.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+++|+...+. ..+..|+.......+.+.. ...+.+|||||+..... + ...++..||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA----M---RKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----H---HHHHhhcCC
Confidence 5899999999999999999987543 3344444333333444432 14789999999755221 1 122456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-ccc-hHHHHHHHH-hcCCceEEEeccCCCCH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA-YEK-WPSFKEKLQ-ARGIEPFCMSAVKREGT 497 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~-~e~-~eel~~~l~-~~g~~i~~ISAktgeGI 497 (518)
++|+|+|+++..+++.+..|...+..+.. ..++|++||+||+|+... ... .....+... ..+.+++++||+++.|+
T Consensus 73 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 151 (198)
T cd04147 73 AFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENV 151 (198)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCH
Confidence 99999999998888877777666654432 246899999999999753 211 112222222 23568899999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 498 HEVISAAYQLLQ 509 (518)
Q Consensus 498 ~eL~~~L~e~L~ 509 (518)
+++|++|.+.+.
T Consensus 152 ~~l~~~l~~~~~ 163 (198)
T cd04147 152 LEVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 136
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.79 E-value=5e-19 Score=164.41 Aligned_cols=151 Identities=21% Similarity=0.205 Sum_probs=103.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
.|+++|.+|||||||+++|++..+.. .+. .|.......+... ...+.+|||||+.. +...+..+++.||+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~-~~~-pt~g~~~~~i~~~-~~~l~i~Dt~G~~~-------~~~~~~~~~~~ad~ 70 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLE-SVV-PTTGFNSVAIPTQ-DAIMELLEIGGSQN-------LRKYWKRYLSGSQG 70 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcc-ccc-ccCCcceEEEeeC-CeEEEEEECCCCcc-------hhHHHHHHHhhCCE
Confidence 37899999999999999999865422 222 1222222223332 46899999999754 22334456788999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH------HhcCCceEEEeccC--
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL------QARGIEPFCMSAVK-- 493 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l------~~~g~~i~~ISAkt-- 493 (518)
+|+|+|+++..++.....+...+.. ...++|+++|+||+|+..... ..++.+.+ ...++.++++||++
T Consensus 71 ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 71 LIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRWILQGTSLDDDG 146 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCceEEEEeeecCCC
Confidence 9999999987766555544444322 125799999999999976542 23322222 33467899999988
Q ss_pred ----CCCHHHHHHHHHH
Q 046233 494 ----REGTHEVISAAYQ 506 (518)
Q Consensus 494 ----geGI~eL~~~L~e 506 (518)
++||+++|+.+..
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999998764
No 137
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.79 E-value=2.7e-18 Score=158.90 Aligned_cols=157 Identities=20% Similarity=0.155 Sum_probs=106.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|...... ..|..|........+.++. ...+.+|||||+.+... + ....+..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR----L---RPLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh----c---cccccCCC
Confidence 47999999999999999999986542 2233333322333444442 24689999999854211 1 11245679
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------------hHHHHHHHHhcC-C
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------------WPSFKEKLQARG-I 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------------~eel~~~l~~~g-~ 484 (518)
|++++|+|+++.+++..+. .|...+..+ ..+.|+++|+||+|+...... ....++.....+ .
T Consensus 74 d~~i~v~~~~~~~s~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 74 DVILMCFSIDSPDSLENIPEKWTPEVKHF---CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 9999999999987777664 344555433 246899999999998753211 112222233333 4
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
++++|||+++.|++++|++|.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 799999999999999999998654
No 138
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.79 E-value=6.9e-19 Score=189.57 Aligned_cols=155 Identities=24% Similarity=0.245 Sum_probs=118.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCc-chhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGL-GHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gL-g~~fLr~Ie 417 (518)
-.+|+++|.||||||||+|+|++... .+.++++||.+.....+.++ +..+.+|||||+.+....-..+ ....+.++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD-GIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC-CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 35899999999999999999998765 35789999999888888876 5789999999986522110001 112345678
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.+|++|+|+|++++.+..+...|.. ..++|+++|+||+|+....... .....+++++||+++.|+
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~~-------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDLE-------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchhh-------hccCCceEEEEeeCCCCH
Confidence 8999999999998876665443322 2468999999999997543221 223568999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
++|+++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 139
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.79 E-value=2.8e-18 Score=166.11 Aligned_cols=152 Identities=15% Similarity=0.041 Sum_probs=109.2
Q ss_pred eCCCCCChhHHHHHHhccCCCCCCCCceeeecee--eEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccCce
Q 046233 346 VGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNL--GVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSAL 422 (518)
Q Consensus 346 VG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~l--g~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvl 422 (518)
||.++||||||+++++...+.. .|. +|+.... ..+.++. ...+.||||+|+..... + +..+++.++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~~-~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----l---~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KYV-ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----L---RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CCC-CceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----h---hHHHhcCCCEE
Confidence 6999999999999999754422 222 2332222 2223321 35799999999865322 2 23346679999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 423 VHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 423 L~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
|+|+|+++..++..+..|..++..+. .+.|++||+||+|+.... ...+........++.+++|||+++.||+++|.
T Consensus 72 ilV~D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~~~-v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 72 IIMFDVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVKDRK-VKAKSITFHRKKNLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccccc-CCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999988888888888777543 468999999999986432 22222344455678999999999999999999
Q ss_pred HHHHHHHh
Q 046233 503 AAYQLLQK 510 (518)
Q Consensus 503 ~L~e~L~~ 510 (518)
+|.+.+..
T Consensus 148 ~l~~~i~~ 155 (200)
T smart00176 148 WLARKLIG 155 (200)
T ss_pred HHHHHHHh
Confidence 99987754
No 140
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.79 E-value=1.3e-18 Score=165.30 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=107.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC-------CCCCCCCceeeeceeeEEEec-------------CCceEEEEcCCCCccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ-------PTIANYPFTTLLPNLGVVSFD-------------YDSTMVVADLPGLLEG 401 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak-------~~Ia~ypfTTl~p~lg~v~~~-------------~~~~l~I~DTPGlieg 401 (518)
+|+++|.+|+|||||+++|+... ......+.+|+......+.+. ....+++|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 69999999999999999999731 111233456666655444443 146899999999743
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---chHHHHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE---KWPSFKEK 478 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---~~eel~~~ 478 (518)
+...+++.+..+|++++|+|+++.......+.+. .... ..+|+++|+||+|+..... ..+++.+.
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~ 148 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-IGEI-----LCKKLIVVLNKIDLIPEEERERKIEKMKKK 148 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence 3445556667789999999998755444433332 2221 2579999999999974322 12333332
Q ss_pred HH-------hcCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 479 LQ-------ARGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 479 l~-------~~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
+. ..+++++++||+++.|+++|+++|..++.
T Consensus 149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 22 13578999999999999999999998765
No 141
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.78 E-value=3.3e-18 Score=151.09 Aligned_cols=157 Identities=27% Similarity=0.267 Sum_probs=113.9
Q ss_pred eeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceE
Q 046233 345 IVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALV 423 (518)
Q Consensus 345 LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL 423 (518)
++|.+|||||||+++|++.... ....+.+|...............+.+|||||+.+...........+...+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 6899999999999999987665 567777787777666666545789999999997755433222234444567799999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHH----HHHHHhcCCceEEEeccCCCCHHH
Q 046233 424 HVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSF----KEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 424 ~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel----~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
+|+|++......... +...+. ....|+++|+||+|+.......... .........+++++||+++.|+++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~-----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR-----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH-----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999877665544 222222 2478999999999998654332221 111122267899999999999999
Q ss_pred HHHHHHHH
Q 046233 500 VISAAYQL 507 (518)
Q Consensus 500 L~~~L~e~ 507 (518)
++++|.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99999875
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.78 E-value=1e-18 Score=156.89 Aligned_cols=139 Identities=22% Similarity=0.280 Sum_probs=94.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|++||.+|||||||+++|++.... +.. |. .+.+. -.+|||||+..... .+.......++.||+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~~----~~~iDt~G~~~~~~---~~~~~~~~~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEYN----DGAIDTPGEYVENR---RLYSALIVTAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEEc----CeeecCchhhhhhH---HHHHHHHHHhhcCCE
Confidence 7899999999999999999986532 211 21 12222 16899999732110 011222234678999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCHHHH
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTHEV 500 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI~eL 500 (518)
+|+|+|++++.+.... .| +.. ..+|+++|+||+|+.......+...+.++..+. +++++||+++.|++++
T Consensus 66 vilv~d~~~~~s~~~~-~~---~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 136 (142)
T TIGR02528 66 IALVQSATDPESRFPP-GF---ASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEAL 136 (142)
T ss_pred EEEEecCCCCCcCCCh-hH---HHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHH
Confidence 9999999988775442 12 221 125999999999997543333444555555555 7999999999999999
Q ss_pred HHHHH
Q 046233 501 ISAAY 505 (518)
Q Consensus 501 ~~~L~ 505 (518)
|++|.
T Consensus 137 ~~~l~ 141 (142)
T TIGR02528 137 VDYLN 141 (142)
T ss_pred HHHHh
Confidence 99874
No 143
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=1.7e-18 Score=187.47 Aligned_cols=163 Identities=23% Similarity=0.269 Sum_probs=118.5
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhc
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLR 414 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr 414 (518)
+..+++|+|||.||||||||+|+|++.... +.+.+++|.+...+.+.+. +..+.+|||||+...... ...+...+..
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN-GRRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC-CcEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 345679999999999999999999987643 4778888888877777776 568999999998632211 0012222344
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccC
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVK 493 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAkt 493 (518)
+++.||++|+|+|+++..+..+ ..+..++.. .++|+++|+||+|+...... ..+.+ ..++ .+++|||++
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~~~~---~~~~~-~~g~~~~~~iSA~~ 183 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERGEAD---AAALW-SLGLGEPHPVSALH 183 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCccchh---hHHHH-hcCCCCeEEEEcCC
Confidence 5778999999999998766543 344555552 46899999999999653221 22222 2222 467999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 046233 494 REGTHEVISAAYQLLQK 510 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~ 510 (518)
|.|+++|+++|.+.+..
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999988865
No 144
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=163.73 Aligned_cols=166 Identities=18% Similarity=0.132 Sum_probs=120.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.+.+|.++|.+|+|||||++++.+.++..........+.....+.+++ ...++||||+|+.++.+ |+..|+|
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqs----Lg~aFYR--- 80 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQS----LGVAFYR--- 80 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhh----cccceec---
Confidence 456899999999999999999998765322221111112222233332 24689999999987655 5555655
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcc---cchHHHHHHHHhc-CCceEEEec
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAY---EKWPSFKEKLQAR-GIEPFCMSA 491 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~---e~~eel~~~l~~~-g~~i~~ISA 491 (518)
.||++++|+|+.++.+++.+..|+.++-.+.. .-...|+||++||+|+.... ......+.+++.. ++++|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 49999999999999999999999998764432 22468999999999997632 2234445555554 789999999
Q ss_pred cCCCCHHHHHHHHHHHHHhh
Q 046233 492 VKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 492 ktgeGI~eL~~~L~e~L~~~ 511 (518)
|...||++.|..+.......
T Consensus 161 K~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccccHHHHHHHHHHHHHhc
Confidence 99999999999998766543
No 145
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.78 E-value=3.2e-18 Score=164.75 Aligned_cols=155 Identities=17% Similarity=0.083 Sum_probs=105.4
Q ss_pred eeeeeeCCCCCChhHHHH-HHhccCCC----CCCCCceee--ecee-e-------EEEec-CCceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLS-VISAAQPT----IANYPFTTL--LPNL-G-------VVSFD-YDSTMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn-~Ls~ak~~----Ia~ypfTTl--~p~l-g-------~v~~~-~~~~l~I~DTPGliegas~ 404 (518)
.+|++||.++||||||+. ++.+..+. ...|..|.. +... . .+.++ ....+.||||+|+.+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 489999999999999996 56543221 122222221 1110 0 01122 1357999999998541
Q ss_pred CCCcchhhhccccccCceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---------------
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEA--------------- 468 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~--------------- 468 (518)
+.. .+++.||++|+|+|++++.++..+. .|..++.... ...|+++|+||+||...
T Consensus 80 ---~~~---~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 80 ---DRR---FAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred ---hhc---ccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhhcccccccc
Confidence 111 1456799999999999999988875 4666666443 36899999999999641
Q ss_pred ----ccc-hHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHH
Q 046233 469 ----YEK-WPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 469 ----~e~-~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~ 507 (518)
... .++..+..+..++++++|||+++.||+++|+.+.++
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 234555555668899999999999999999998764
No 146
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.78 E-value=3.3e-18 Score=158.81 Aligned_cols=154 Identities=22% Similarity=0.227 Sum_probs=107.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCC----------------CCceeeeceeeEEEecCCceEEEEcCCCCccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIAN----------------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG 405 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~----------------ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~ 405 (518)
+|+++|.+|||||||+++|++....... ...+|+......+.+. ...+.+|||||+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP-DRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC-CEEEEEEeCCCcHH-----
Confidence 4899999999999999999987543321 1234555444445554 46899999999754
Q ss_pred CCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHHh-
Q 046233 406 FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQA- 481 (518)
Q Consensus 406 ~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~~- 481 (518)
+...+...+..+|++++|+|++..........+ ..+.. ..+|+++|+||+|+...... ...+.+.++.
T Consensus 75 --~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~-----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 75 --FSSEVIRGLSVSDGAILVVDANEGVQPQTREHL-RIARE-----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred --HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHH-HHHHH-----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 223355556789999999999886544433322 22321 46899999999999863221 2233333332
Q ss_pred -------------cCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 482 -------------RGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 482 -------------~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
...+++++||+++.|+++++.+|.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2468999999999999999999998864
No 147
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=3.6e-18 Score=182.12 Aligned_cols=164 Identities=23% Similarity=0.316 Sum_probs=120.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc----hhhhc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG----HEFLR 414 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg----~~fLr 414 (518)
..+|+++|.+|||||||+++|++... .+...+++|.+.....+.+. +..+.+|||||+....+....+. ...++
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD-GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC-CeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 35899999999999999999998764 45778899988776666655 57899999999866443321111 22345
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-----CCceEEE
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-----GIEPFCM 489 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-----g~~i~~I 489 (518)
+++.||++|+|+|++...+..+...+..... ..+|++||+||+|+..... ..++.+.+... .++++++
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~------~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE------AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEE
Confidence 7889999999999998877666554333222 3689999999999984322 23333333321 4689999
Q ss_pred eccCCCCHHHHHHHHHHHHHhh
Q 046233 490 SAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~~~ 511 (518)
||+++.|++++++.+.+.+...
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998877644
No 148
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.1e-18 Score=163.34 Aligned_cols=163 Identities=13% Similarity=-0.019 Sum_probs=123.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.||+++|..+|||||||++++...+.-...+..-++.....+.+.+ ..++++|||+|+.++.+ +... +++.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs----lips---Y~Rds 95 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LIPS---YIRDS 95 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh----hhhh---hccCC
Confidence 6899999999999999999998776544444444444444444432 35899999999987544 4344 45669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH-HHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS-FKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee-l~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
.++|+|+|+++..++++...|.+.+...+. -.+.-+++|+||.||.+..+...+ -....+..+..++++||+.|+||.
T Consensus 96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~g-s~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 96 SVAVIVYDITDRNSFENTSKWIEDVRRERG-SDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred eEEEEEEeccccchHHHHHHHHHHHHhccC-CCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 999999999999999999888887764432 123557889999999987665433 233444557899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
+||..|...++..
T Consensus 175 ~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 175 QLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHhccCc
Confidence 9999999988765
No 149
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.78 E-value=3.7e-18 Score=158.29 Aligned_cols=151 Identities=17% Similarity=0.107 Sum_probs=106.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+.++...... ..++ ++.......+.++. ...+.+|||+|+.. ..+ ++.+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------~~~---~~~~~ 67 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------AQF---ASWVD 67 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCCC-CCccceEEEEEECCEEEEEEEEECCCCCc---------hhH---HhcCC
Confidence 6899999999999999998765432 1222 12222223344442 24689999999843 112 35689
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--cccchHHH-HHHHHhc-CCceEEEeccCCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE--AYEKWPSF-KEKLQAR-GIEPFCMSAVKREG 496 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~--~~e~~eel-~~~l~~~-g~~i~~ISAktgeG 496 (518)
++++|+|++++.+++.+..|..++..+. .....|+++|+||+|+.. ......+. .+..+.. .+.+++|||+++.|
T Consensus 68 ~~ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 146 (158)
T cd04103 68 AVIFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLN 146 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 9999999999999999888877776553 234689999999999853 22222222 2333343 58999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 497 THEVISAAYQL 507 (518)
Q Consensus 497 I~eL~~~L~e~ 507 (518)
|+++|.++.+.
T Consensus 147 i~~~f~~~~~~ 157 (158)
T cd04103 147 VERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHhh
Confidence 99999999854
No 150
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=3.9e-18 Score=153.17 Aligned_cols=161 Identities=27% Similarity=0.337 Sum_probs=110.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC-CCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG-FGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~-~gLg~~fLr~Ier 418 (518)
.+|+++|.+|||||||+++|++.... +...+.+|........... ...+.+|||||+....... ..+.......+..
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD-DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC-CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999987543 2344555555444444333 4689999999987543321 0122233445778
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc--CCceEEEeccCCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR--GIEPFCMSAVKREG 496 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~--g~~i~~ISAktgeG 496 (518)
+|++++|+|+++...... ..+...+.. ...|+++|+||+|+....+....+...+... ..+++++|++++.|
T Consensus 83 ~d~i~~v~d~~~~~~~~~-~~~~~~~~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIGEGD-EFILELLKK-----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccCchH-HHHHHHHHH-----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 999999999998632222 223333432 2589999999999985444445555555544 36899999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 497 THEVISAAYQLL 508 (518)
Q Consensus 497 I~eL~~~L~e~L 508 (518)
+++++++|.+.+
T Consensus 157 ~~~l~~~l~~~~ 168 (168)
T cd04163 157 VDELLEEIVKYL 168 (168)
T ss_pred hHHHHHHHHhhC
Confidence 999999998753
No 151
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.78 E-value=7.3e-18 Score=156.87 Aligned_cols=154 Identities=18% Similarity=0.083 Sum_probs=106.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
+|+++|.+|||||||+.++..... ...|+.|+.+.....+.++. ...+.+|||||+.+... + +-..++.+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK----L---RPLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc----c---cccccCCCc
Confidence 689999999999999999987543 33455444333323344432 24788999999855322 1 122456799
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc------------cc-hHHHHHHHHhcCC-c
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAY------------EK-WPSFKEKLQARGI-E 485 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~------------e~-~eel~~~l~~~g~-~ 485 (518)
++|+|+|++++.++.... .|...+... ....|+++|+||+|+.... .. .++...+....+. .
T Consensus 74 ~~i~v~d~~~~~sf~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 74 VFLLCFSVVNPSSFQNISEKWIPEIRKH---NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999999999988877653 455555432 2368999999999996431 11 1233344444455 8
Q ss_pred eEEEeccCCCCHHHHHHHHHH
Q 046233 486 PFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 486 i~~ISAktgeGI~eL~~~L~e 506 (518)
+++|||+++.|++++|+.+.-
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 999999999999999988753
No 152
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.77 E-value=4.5e-18 Score=155.16 Aligned_cols=158 Identities=22% Similarity=0.233 Sum_probs=118.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCcee-eeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTT-LLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTT-l~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
||+++|.++||||||+++|.+....- .+..|. .+.....+.++. ...+.|||++|+..... +.. ..++.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----~~~---~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE-NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS----LRD---IFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS-SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH----HHH---HHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc-ccccccccccccccccccccccccccccccccccccc----ccc---cccccc
Confidence 68999999999999999999875432 222222 333333444432 24799999999754211 111 235679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|+++..++..+..|...+..+.+ ...|++||+||+|+...... .++..+.....+.+++++||+++.||.
T Consensus 73 ~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 73 DAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVK 150 (162)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHH
T ss_pred cccccccccccccccccccccccccccccc--ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHH
Confidence 999999999999999888888888876654 46899999999999864433 345666777778999999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
++|..|.+.+.
T Consensus 151 ~~f~~~i~~i~ 161 (162)
T PF00071_consen 151 EIFQELIRKIL 161 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 153
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.77 E-value=4.5e-18 Score=160.47 Aligned_cols=156 Identities=24% Similarity=0.294 Sum_probs=111.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
-.+|+++|+.|||||||+++|...... ....|...+...+.+. +..+.+||++|... +...|-.++..+
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~---~~~pT~g~~~~~i~~~-~~~~~~~d~gG~~~-------~~~~w~~y~~~~ 82 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEIS---ETIPTIGFNIEEIKYK-GYSLTIWDLGGQES-------FRPLWKSYFQNA 82 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEE---EEEEESSEEEEEEEET-TEEEEEEEESSSGG-------GGGGGGGGHTTE
T ss_pred EEEEEEECCCccchHHHHHHhhhcccc---ccCcccccccceeeeC-cEEEEEEecccccc-------ccccceeecccc
Confidence 358999999999999999999864321 1233444555556665 57999999999754 222344556779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH------hcCCceEEEeccC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ------ARGIEPFCMSAVK 493 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~------~~g~~i~~ISAkt 493 (518)
|++|||+|+++.+.+.........+-. .+.+...|++|++||+|+..+.. .+++...+. ...+.++.|||++
T Consensus 83 ~~iIfVvDssd~~~l~e~~~~L~~ll~-~~~~~~~piLIl~NK~D~~~~~~-~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 83 DGIIFVVDSSDPERLQEAKEELKELLN-DPELKDIPILILANKQDLPDAMS-EEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp SEEEEEEETTGGGGHHHHHHHHHHHHT-SGGGTTSEEEEEEESTTSTTSST-HHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred ceeEEEEecccceeecccccchhhhcc-hhhcccceEEEEeccccccCcch-hhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999987765554433333321 23456899999999999987543 344554443 2356799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQLL 508 (518)
Q Consensus 494 geGI~eL~~~L~e~L 508 (518)
|+|+.+.++||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999864
No 154
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.77 E-value=4e-18 Score=183.33 Aligned_cols=160 Identities=21% Similarity=0.270 Sum_probs=117.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc-hhhhcc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG-HEFLRH 415 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg-~~fLr~ 415 (518)
+.-.+|+++|.||||||||+|+|++... .+.++|+||.+.....+.++ +..+.+|||||+.+....-...+ .....+
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~-g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN-GILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC-CEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 3446899999999999999999998754 46889999999888888886 57899999999865322100011 123456
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktge 495 (518)
++.||++|+|+|++++.+.... |...+. ..++|+++|+||+|+... + .+ ...+..+.+++.+||++ .
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~-----~~~~piIlV~NK~Dl~~~-~-~~---~~~~~~~~~~~~vSak~-~ 346 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN-----KSKKPFILVLNKIDLKIN-S-LE---FFVSSKVLNSSNLSAKQ-L 346 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh-----hCCCCEEEEEECccCCCc-c-hh---hhhhhcCCceEEEEEec-C
Confidence 7889999999999987766554 333332 136899999999999654 1 12 22333456889999998 6
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
||+++++.|.+.+.+.
T Consensus 347 gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 347 KIKALVDLLTQKINAF 362 (442)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999888877653
No 155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.77 E-value=4.8e-18 Score=156.87 Aligned_cols=153 Identities=25% Similarity=0.201 Sum_probs=103.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|++..... ...|...+...+.+. +..+.+||+||+.. +...+..+++.|+
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~-~~~~~~~D~~G~~~-------~~~~~~~~~~~~~ 83 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSD-GFKLNVWDIGGQRA-------IRPYWRNYFENTD 83 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEEC-CEEEEEEECCCCHH-------HHHHHHHHhcCCC
Confidence 589999999999999999999864321 111222233355555 57899999999754 2223445567899
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-----CCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-----GIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-----g~~i~~ISAktge 495 (518)
++++|+|+++..++.....+...+... .....+|+++|+||+|+..... .+++.+.+... .++++++||++++
T Consensus 84 ~ii~v~D~~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 84 CLIYVIDSADKKRLEEAGAELVELLEE-EKLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhC-hhhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 999999999866554443333322211 1124689999999999975432 33444443321 2357899999999
Q ss_pred CHHHHHHHHHH
Q 046233 496 GTHEVISAAYQ 506 (518)
Q Consensus 496 GI~eL~~~L~e 506 (518)
|++++++||.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 156
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.77 E-value=7.3e-18 Score=159.00 Aligned_cols=162 Identities=22% Similarity=0.285 Sum_probs=111.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccC--CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc------cCCCcch
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQ--PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH------QGFGLGH 410 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak--~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas------~~~gLg~ 410 (518)
.+++|+++|.+|||||||+++|++.+ ..+...+++|....... . ...+.||||||+..... ....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c--CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 45689999999999999999999864 34456666666544322 2 36899999999753211 1112334
Q ss_pred hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHHhcCCceE
Q 046233 411 EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQARGIEPF 487 (518)
Q Consensus 411 ~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~~~g~~i~ 487 (518)
.++++...++++++|+|++.+....... +..++.. ..+|+++|+||+|+....+. .+.+...+.....+++
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~-i~~~l~~-----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQ-MIEWLKE-----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHH-HHHHHHH-----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 4556666678899999988765443322 3334432 36899999999999754322 2234444444357899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHh
Q 046233 488 CMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
++||+++.|+++++++|.+++..
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988754
No 157
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.77 E-value=1.3e-17 Score=147.26 Aligned_cols=155 Identities=21% Similarity=0.117 Sum_probs=104.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
++|+++|.+|||||||+++|+........++++|.+.....+.++.. ..+.+||+||+.+... +...+ +..+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~----~~~~~---~~~~ 74 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA----IRRLY---YRAV 74 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH----HHHHH---Hhhh
Confidence 58999999999999999999998755566677777766665666521 5789999999755322 22222 3346
Q ss_pred CceEEEEeCCCC-CCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCceEEEeccCCCC
Q 046233 420 SALVHVIDGSAE-QPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEPFCMSAVKREG 496 (518)
Q Consensus 420 DvlL~VVDaS~~-~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i~~ISAktgeG 496 (518)
+.+++++|.... ....... .+...+..... .+.|+++|+||+|+.... ........+... ..+++++||+++.|
T Consensus 75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 75 ESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKN 151 (161)
T ss_pred hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCC
Confidence 667777776654 2222222 23333332222 278999999999997643 223333334333 45799999999999
Q ss_pred HHHHHHHHH
Q 046233 497 THEVISAAY 505 (518)
Q Consensus 497 I~eL~~~L~ 505 (518)
+.+++++|.
T Consensus 152 v~~~~~~l~ 160 (161)
T TIGR00231 152 IDSAFKIVE 160 (161)
T ss_pred HHHHHHHhh
Confidence 999999874
No 158
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=4e-18 Score=158.41 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=100.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|.+... .. ...+.+.+... .+|||||+...... +...++..+..||+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~--------~~~~~v~~~~~---~~iDtpG~~~~~~~---~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LA--------RKTQAVEFNDK---GDIDTPGEYFSHPR---WYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cC--------ccceEEEECCC---CcccCCccccCCHH---HHHHHHHHHhcCCE
Confidence 799999999999999999987532 11 12223333322 37999998532211 22333445788999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC--CceEEEeccCCCCHHH
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG--IEPFCMSAVKREGTHE 499 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g--~~i~~ISAktgeGI~e 499 (518)
+|+|+|+++..+... .++..+. ..+|+++|+||+|+... ..+.+.+.+...+ .+++++||++++|+++
T Consensus 68 il~v~d~~~~~s~~~-----~~~~~~~---~~~~ii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 68 LIYVHGANDPESRLP-----AGLLDIG---VSKRQIAVISKTDMPDA--DVAATRKLLLETGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred EEEEEeCCCcccccC-----HHHHhcc---CCCCeEEEEEccccCcc--cHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence 999999998655322 1222221 35799999999999653 2345556666665 4899999999999999
Q ss_pred HHHHHHHHHHhh
Q 046233 500 VISAAYQLLQKN 511 (518)
Q Consensus 500 L~~~L~e~L~~~ 511 (518)
|+++|.+.+.+.
T Consensus 138 l~~~l~~~~~~~ 149 (158)
T PRK15467 138 LVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHhchhh
Confidence 999999888654
No 159
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=1.1e-17 Score=189.53 Aligned_cols=162 Identities=22% Similarity=0.329 Sum_probs=121.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhh------
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEF------ 412 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~f------ 412 (518)
..+|+++|.||||||||+|+|++.+.. +..+++||.++....+.++ +..+.+|||||+.+..... .+..+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~-~~~~~liDTaG~~~~~~~~--~~~e~~~~~r~ 526 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID-GEDWLFIDTAGIKRRQHKL--TGAEYYSSLRT 526 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC-CCEEEEEECCCcccCcccc--hhHHHHHHHHH
Confidence 469999999999999999999998753 5789999999887777776 5689999999986533221 11222
Q ss_pred hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-----CCceE
Q 046233 413 LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-----GIEPF 487 (518)
Q Consensus 413 Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-----g~~i~ 487 (518)
+.+++.||++|+|+|+++..+..+...+..... .++|++||+||+|+..... .+.+...+... ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~------~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVD------AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCCCCCCEE
Confidence 234678999999999999887777664433322 4689999999999975422 22333333221 34779
Q ss_pred EEeccCCCCHHHHHHHHHHHHHhh
Q 046233 488 CMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
++||++|.|+++|++.+.+.++.+
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=7.4e-18 Score=179.15 Aligned_cols=158 Identities=23% Similarity=0.319 Sum_probs=119.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~IerA 419 (518)
+|++||.||||||||+|+|++.... +.+++++|.+.....+.+. +..+.+|||||+...... ...+......+++.|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG-GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC-CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence 4899999999999999999987653 4788999999888888876 578999999998532111 111333445567889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI~ 498 (518)
|++++|+|+.......+. .+..+|+. .++|+++|+||+|+....... ..+...++ +++++||+++.|+.
T Consensus 80 d~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~~~~~----~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKEDAVA----AEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcccccH----HHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999886554443 34455553 368999999999997654322 22334455 79999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
++++++.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999988855
No 161
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=176.93 Aligned_cols=166 Identities=23% Similarity=0.264 Sum_probs=129.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCC----cchhhhc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFG----LGHEFLR 414 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~g----Lg~~fLr 414 (518)
..+|++||.||+|||||+|+|++.+..+ .+.++||.++....+.++ +..+.++||.|+.....-..+ -....++
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~-~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD-GRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC-CeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 3499999999999999999999987755 889999999988888887 689999999998653322111 1123456
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc-cchHHHHHHHHhc-----CCceEE
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQAR-----GIEPFC 488 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~~-----g~~i~~ 488 (518)
.+++|+++++|+|++.+.+.++.+.+-...+ ..++++||+||+|+.+.. ...++++..+... ..++++
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 6889999999999999888887776555444 579999999999998753 2234444444332 458999
Q ss_pred EeccCCCCHHHHHHHHHHHHHhhh
Q 046233 489 MSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
+||+++.++.+|++.+.+....+.
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhc
Confidence 999999999999999998877654
No 162
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=5.6e-18 Score=179.70 Aligned_cols=161 Identities=27% Similarity=0.286 Sum_probs=123.5
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc-hhhhccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG-HEFLRHT 416 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg-~~fLr~I 416 (518)
.-.+|+++|.||||||||+|+|++....| .+.|+||.+.....+.++ +..+.++||+|+.+....=..+| ..-...+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~-G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN-GIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC-CEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 34589999999999999999999988765 899999999999999998 79999999999976433211122 1223457
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
+.||+++||+|++.+.+..+...+. .+ ..++|+++|+||+||...... ..+ .+ ..+.+++.+||++++|
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~-~~------~~~~~~i~v~NK~DL~~~~~~-~~~--~~-~~~~~~i~iSa~t~~G 363 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE-LL------PKKKPIIVVLNKADLVSKIEL-ESE--KL-ANGDAIISISAKTGEG 363 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH-hc------ccCCCEEEEEechhccccccc-chh--hc-cCCCceEEEEecCccC
Confidence 8899999999999875555544333 11 257999999999999876542 111 11 1234799999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
++.|.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988765
No 163
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=1.9e-17 Score=163.07 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=106.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|||.++||||||+++|+...+. ..|..|........+.++. ...+.||||+|+..... +... .+..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~----l~~~---~~~~~ 73 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN----VRPL---AYPDS 73 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH----HhHH---hccCC
Confidence 37899999999999999999986542 2333332222222233332 35789999999854221 2222 35679
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc------------c-hHHHHHHHHhcC-C
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE------------K-WPSFKEKLQARG-I 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e------------~-~eel~~~l~~~g-~ 484 (518)
|++|+|+|++++++++.+ ..|..++..+. .+.|+|||+||+||..... . .++.....+..+ +
T Consensus 74 d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 74 DAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 999999999999888887 34554554433 4689999999999965311 1 122333334456 4
Q ss_pred ceEEEeccCCCC-HHHHHHHHHHHH
Q 046233 485 EPFCMSAVKREG-THEVISAAYQLL 508 (518)
Q Consensus 485 ~i~~ISAktgeG-I~eL~~~L~e~L 508 (518)
++++|||+++.+ |+++|..+....
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 899999999985 999999888754
No 164
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.75 E-value=7.5e-18 Score=158.47 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=102.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccC--CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc------CCCcchh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQ--PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ------GFGLGHE 411 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak--~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~------~~gLg~~ 411 (518)
.++|+++|.+|||||||+++|++.. ..+...+++|..+....+ + ..+.+|||||+...... ...+...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N--DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C--CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 4589999999999999999999874 344566777776554332 2 37999999997543211 0112234
Q ss_pred hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---chHHHHHHHHhc--CCce
Q 046233 412 FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE---KWPSFKEKLQAR--GIEP 486 (518)
Q Consensus 412 fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---~~eel~~~l~~~--g~~i 486 (518)
|++....++++++|+|++++....+... ...+.. ..+|+++|+||+|+....+ ..+++++.+... .+++
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~~~-~~~~~~-----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v 167 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDLEM-LEWLRE-----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV 167 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHHHH-HHHHHH-----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence 4555456789999999988655555433 334432 3689999999999975432 234555555554 3589
Q ss_pred EEEeccCCCCHH
Q 046233 487 FCMSAVKREGTH 498 (518)
Q Consensus 487 ~~ISAktgeGI~ 498 (518)
|++||++++|++
T Consensus 168 ~~~Sa~~g~gi~ 179 (179)
T TIGR03598 168 QLFSSLKKTGID 179 (179)
T ss_pred EEEECCCCCCCC
Confidence 999999999974
No 165
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.4e-17 Score=160.61 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=129.9
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhc
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
++..+.+|+++|.+++|||-|+.+++...+.+...+..-++.....+.++.. ...+||||+|+.+... +...+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA----itSaY-- 83 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA----ITSAY-- 83 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc----ccchh--
Confidence 4566789999999999999999999999887776665555555555555532 4689999999976432 33334
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccC
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAkt 493 (518)
++.|.++++|+|++...+++.+..|..+|+.+.. .++++++|+||+||.+.+... ++-+...+..++.++++||+.
T Consensus 84 -YrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~ 160 (222)
T KOG0087|consen 84 -YRGAVGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALD 160 (222)
T ss_pred -hcccceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccc
Confidence 4558999999999999999999999999986653 579999999999998755543 444445555688999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 046233 494 REGTHEVISAAYQLLQK 510 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~ 510 (518)
..|+++.|..+...+-.
T Consensus 161 ~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 161 ATNVEKAFERVLTEIYK 177 (222)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999887776543
No 166
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.1e-17 Score=178.30 Aligned_cols=157 Identities=25% Similarity=0.335 Sum_probs=116.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc-cCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH-QGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas-~~~gLg~~fLr~Ier 418 (518)
++|+|||.+|||||||+|+|++.+.. +.+++++|.+...+.+.+. +..+.+|||||+..... ....+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL-GREFILIDTGGIEPDDDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC-CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 58999999999999999999987653 5788999998888888886 48899999999975221 011122334556788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI 497 (518)
||++|||+|+++..+..+.. +..+|+. ..+|+++|+||+|+..... .+.+. ...++ .++++||+++.|+
T Consensus 81 ad~il~vvd~~~~~~~~~~~-~~~~l~~-----~~~piilv~NK~D~~~~~~---~~~~~-~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEE-IAKILRK-----SNKPVILVVNKVDGPDEEA---DAYEF-YSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred CCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCcEEEEEECccCccchh---hHHHH-HhcCCCCCEEEEeeCCCCH
Confidence 99999999998865544432 3445553 2689999999999765322 22222 23444 4899999999999
Q ss_pred HHHHHHHHHHH
Q 046233 498 HEVISAAYQLL 508 (518)
Q Consensus 498 ~eL~~~L~e~L 508 (518)
++++++|.+..
T Consensus 151 ~~l~~~I~~~~ 161 (435)
T PRK00093 151 GDLLDAILEEL 161 (435)
T ss_pred HHHHHHHHhhC
Confidence 99999998744
No 167
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.75 E-value=1.5e-17 Score=154.38 Aligned_cols=162 Identities=17% Similarity=0.130 Sum_probs=125.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceee--eceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTL--LPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl--~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
..+|.|||.+|+||||||.+++...+. +...+|+ +..+.++.++. ..++.||||+|+.++.. |...|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd--~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt----LTpSyyR-- 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD--DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT----LTPSYYR-- 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC--ccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhc----cCHhHhc--
Confidence 458899999999999999999987543 2223343 44455555543 35799999999977543 5555554
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
.|..+|+|+|++.++++..+..|..+|..|..+ .+.-.++|+||+|....+.+ -++-..+.+.+.+-|+++||++.+
T Consensus 83 -gaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~ 160 (209)
T KOG0080|consen 83 -GAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRE 160 (209)
T ss_pred -cCceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhc
Confidence 589999999999999999999999999998753 45667889999998744333 245556677778899999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
|++..|+.|.+.+.+.
T Consensus 161 ~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 161 NVQCCFEELVEKIIET 176 (209)
T ss_pred cHHHHHHHHHHHHhcC
Confidence 9999999998877553
No 168
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.75 E-value=1.9e-17 Score=157.67 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=96.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-CC---------------CCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-AN---------------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~---------------ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
+.+|+++|.+|||||||+++|+.....+ .. ...+|.......+... ...+.+|||||+.+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-~~~~~l~DtpG~~~~-- 78 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-DTKINIVDTPGHADF-- 78 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-CEEEEEEECCCcHHH--
Confidence 4589999999999999999998632111 11 1233444433344443 568999999998652
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--chHHHHHHHH-
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KWPSFKEKLQ- 480 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l~- 480 (518)
...+..+++.+|++++|+|+++.. ......+...+.. .++|+++|+||+|+..... ..+++.+.+.
T Consensus 79 -----~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 79 -----GGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred -----HHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 223455677899999999998743 2222333333321 3689999999999974321 2334444442
Q ss_pred ------hcCCceEEEeccCCCCHHHH
Q 046233 481 ------ARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 481 ------~~g~~i~~ISAktgeGI~eL 500 (518)
..+++++++||++|.|+.++
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCccCEEEeehhcccccccc
Confidence 22678999999999877544
No 169
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.9e-17 Score=156.95 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=122.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceee--EEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLG--VVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg--~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
+.|+.++|..+||||+||.+++...+. ..+. .|+-...| .++++. ..+++||||.|+....+ +...|++.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~-~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs----v~~syYr~- 78 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQ-PVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS----VTRSYYRG- 78 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcc-cccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH----HHHHHhcc-
Confidence 458899999999999999999987543 2222 45444333 344442 35899999999976544 44455554
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktge 495 (518)
|-.+|+|+|++..+++..+..|...++.+. ..+.-+++++||+||...+++- ++-..+.+++++.++++||++++
T Consensus 79 --a~GalLVydit~r~sF~hL~~wL~D~rq~~--~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~ 154 (216)
T KOG0098|consen 79 --AAGALLVYDITRRESFNHLTSWLEDARQHS--NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAE 154 (216)
T ss_pred --CcceEEEEEccchhhHHHHHHHHHHHHHhc--CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhh
Confidence 899999999999999999888888887654 3578899999999998776654 44555666779999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
|++|.|..+...+-..
T Consensus 155 ~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 155 NVEEAFINTAKEIYRK 170 (216)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999887665443
No 170
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.74 E-value=1.4e-17 Score=158.16 Aligned_cols=158 Identities=24% Similarity=0.307 Sum_probs=107.5
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCC------------------CCceeeeceeeEEE-ecCCceEEEEcCCCCc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIAN------------------YPFTTLLPNLGVVS-FDYDSTMVVADLPGLL 399 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~------------------ypfTTl~p~lg~v~-~~~~~~l~I~DTPGli 399 (518)
.+..|+++|..++|||||+.+|+.....+.. ....|.......+. ......++++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4568999999999999999999865322111 12233433333333 1225789999999986
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHH
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKE 477 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~ 477 (518)
+ +.....+.+..+|++|+|+|+.........+.+. .+.. .+.|++||+||+|+.... +..+++.+
T Consensus 82 ~-------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~-~~~~-----~~~p~ivvlNK~D~~~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 82 D-------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLK-ILRE-----LGIPIIVVLNKMDLIEKELEEIIEEIKE 148 (188)
T ss_dssp H-------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHH-HHHH-----TT-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred c-------eeecccceecccccceeeeecccccccccccccc-cccc-----cccceEEeeeeccchhhhHHHHHHHHHH
Confidence 5 3345666788899999999999865555444443 3432 468999999999998321 12233332
Q ss_pred HH-Hhc------CCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 478 KL-QAR------GIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 478 ~l-~~~------g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
.+ +.. .++++++||++|.|+++|++.|.+.++
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22 222 257999999999999999999998876
No 171
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=3.9e-17 Score=154.67 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=107.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|...... ..+..|+.......+.+.. ...+.+|||||+..... +... ++..+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~~~---~~~~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER----LRPL---SYSKA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECCEEEEEEEEECCCChhccc----cchh---hcCCC
Confidence 37999999999999999999855432 2222222222233333332 24588999999854321 1111 34668
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc----------cc-hHHHHHHHHhcC-Cce
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAY----------EK-WPSFKEKLQARG-IEP 486 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~----------e~-~eel~~~l~~~g-~~i 486 (518)
+++++|+|+++.+++..+. .|...+.... .+.|+++|+||+|+.... .. .+......+..+ .++
T Consensus 74 ~~~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (187)
T cd04129 74 HVILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKY 150 (187)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEE
Confidence 9999999999888877765 3555555332 369999999999985421 11 122333334445 479
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
|+|||+++.||+++|+++.+.+...+
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999997765443
No 172
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.73 E-value=3.4e-17 Score=186.35 Aligned_cols=159 Identities=22% Similarity=0.325 Sum_probs=119.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCC--Cc----chhhhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGF--GL----GHEFLR 414 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~--gL----g~~fLr 414 (518)
.+|+++|.||||||||+|+|++.+..+++++++|.+...+.+.++ +..+.+|||||+.+...... .+ ...++.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~-~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC-ceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 379999999999999999999998889999999999988888765 57899999999976322110 11 112221
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCC
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
.+.+|++++|+|+++.+.. .. +..++.. .++|+++|+||+|+.+.......+.+..+..+++++++||+++
T Consensus 83 -~~~aD~vI~VvDat~ler~--l~-l~~ql~e-----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 83 -SGDADLLINVVDASNLERN--LY-LTLQLLE-----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred -ccCCCEEEEEecCCcchhh--HH-HHHHHHH-----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence 2479999999999875432 22 3333432 3689999999999975544333344444455889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQLLQ 509 (518)
Q Consensus 495 eGI~eL~~~L~e~L~ 509 (518)
+|++++++.+.+...
T Consensus 154 ~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 154 RGIEALKLAIDRHQA 168 (772)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999987653
No 173
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.3e-17 Score=181.37 Aligned_cols=160 Identities=23% Similarity=0.353 Sum_probs=125.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcc--ccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLE--GAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie--gas~~~gLg~~fLr~IerA 419 (518)
+|+++|.||+|||||+|+|++.+.++++||+.|.+...|.+.+. +..+.++|+||... ..+......++|+.. ...
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~-~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~-~~~ 82 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK-GHEIEIVDLPGTYSLTAYSEDEKVARDFLLE-GKP 82 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec-CceEEEEeCCCcCCCCCCCchHHHHHHHHhc-CCC
Confidence 69999999999999999999999999999999999999999988 56799999999874 233444455666543 568
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++|.|+|+++-+. ++....+.++ .++|+++++|++|.....-..-+..+.-+..++|++++||++|.|+++
T Consensus 83 D~ivnVvDAtnLeR--nLyltlQLlE------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 83 DLIVNVVDATNLER--NLYLTLQLLE------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CEEEEEcccchHHH--HHHHHHHHHH------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 99999999998543 2222222232 468999999999998665433334444445589999999999999999
Q ss_pred HHHHHHHHHHhh
Q 046233 500 VISAAYQLLQKN 511 (518)
Q Consensus 500 L~~~L~e~L~~~ 511 (518)
+++.+.+..+..
T Consensus 155 l~~~i~~~~~~~ 166 (653)
T COG0370 155 LKRAIIELAESK 166 (653)
T ss_pred HHHHHHHhcccc
Confidence 999998765443
No 174
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=5.2e-17 Score=184.05 Aligned_cols=163 Identities=24% Similarity=0.262 Sum_probs=117.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc-cCCCcchhhhcc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH-QGFGLGHEFLRH 415 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas-~~~gLg~~fLr~ 415 (518)
..+++|+++|.||||||||+|+|++.+.. +.++|++|.+...+...+. +..+.+|||||+..... ....+.......
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA-GTDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC-CEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 35678999999999999999999987653 4788999998877777766 56899999999864211 011122334455
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktge 495 (518)
++.||++|||+|++......+ ..+...|+. .++|+|+|+||+|+..... ...+.+......+++|||+++.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-----~~~pvIlV~NK~D~~~~~~---~~~~~~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR-----AGKPVVLAVNKIDDQASEY---DAAEFWKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh-----cCCCEEEEEECcccccchh---hHHHHHHcCCCCeEEEECCCCC
Confidence 788999999999987433332 234455542 4789999999999865322 1222222212257899999999
Q ss_pred CHHHHHHHHHHHHHh
Q 046233 496 GTHEVISAAYQLLQK 510 (518)
Q Consensus 496 GI~eL~~~L~e~L~~ 510 (518)
||.+|+++|.+.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999998865
No 175
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6e-17 Score=148.45 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=128.4
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe-cCCceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF-DYDSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~-~~~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
+..+.++.++|...+|||||+.+.....+.++-+....++..+..+.- +....++||||.|+.. +......+
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-------yrtiTTay 90 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-------YRTITTAY 90 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-------hhHHHHHH
Confidence 445668999999999999999999998776654443333333333322 2235799999999866 22223345
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktg 494 (518)
++.|+++|+++|+++.+++..++.|...++.|. ..+.|+|+|+||||+...+... +..+.+..+.|..+|++|||.+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktys--w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYS--WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHHHHHHheeee--ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence 677999999999999999988888888888774 4689999999999998765443 4455566667999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhH
Q 046233 495 EGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~~~ 513 (518)
.|++++|+.+...+.....
T Consensus 169 inVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDKMS 187 (193)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999999999988876543
No 176
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.72 E-value=1.4e-16 Score=176.58 Aligned_cols=153 Identities=22% Similarity=0.180 Sum_probs=110.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+.|+++|.+|+|||||+++|.+........+++|.+.....+.+.....++||||||+... ...+.+.+..+
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-------~~~r~rga~~a 159 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-------TSMRARGAKVT 159 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcch-------hhHHHhhhccC
Confidence 46899999999999999999998766555556677665555555543348999999998653 23345667789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc---------CCceEEEe
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR---------GIEPFCMS 490 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~---------g~~i~~IS 490 (518)
|++|+|+|+.+....+..+.+.. +. ..+.|+++|+||+|+.... .+.+.+.+... ..+++++|
T Consensus 160 DiaILVVda~dgv~~qT~e~i~~-~~-----~~~vPiIVviNKiDl~~~~--~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 160 DIVVLVVAADDGVMPQTIEAISH-AK-----AANVPIIVAINKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred CEEEEEEECCCCCCHhHHHHHHH-HH-----HcCCCEEEEEECcccccCC--HHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 99999999987654455544432 22 2468999999999997532 23333333322 24799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 046233 491 AVKREGTHEVISAAYQL 507 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~ 507 (518)
|++|.|+++|+++|..+
T Consensus 232 AktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 232 ALTGDGIDELLDMILLQ 248 (587)
T ss_pred CCCCCChHHHHHhhhhh
Confidence 99999999999998653
No 177
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.72 E-value=1.1e-16 Score=139.13 Aligned_cols=153 Identities=19% Similarity=0.147 Sum_probs=101.8
Q ss_pred eeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhccccccCceE
Q 046233 345 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALV 423 (518)
Q Consensus 345 LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL 423 (518)
++|.+|+|||||+++|++.......+..+............ ....+.+||+||+..... .....+..+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS-------LRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-------HHHHHhcCCCEEE
Confidence 68999999999999999875422223222222222222221 135799999999865322 1233456799999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH--HHHHHHhcCCceEEEeccCCCCHHHHH
Q 046233 424 HVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS--FKEKLQARGIEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 424 ~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee--l~~~l~~~g~~i~~ISAktgeGI~eL~ 501 (518)
+|+|++..........++.... .......+|+++|+||+|+......... .........++++++||+++.|+++++
T Consensus 74 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 152 (157)
T cd00882 74 LVYDVTDRESFENVKEWLLLIL-INKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELF 152 (157)
T ss_pred EEEECcCHHHHHHHHHHHHHHH-HhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHH
Confidence 9999998776666554421111 1223457999999999999865443222 222233346799999999999999999
Q ss_pred HHHH
Q 046233 502 SAAY 505 (518)
Q Consensus 502 ~~L~ 505 (518)
.+|.
T Consensus 153 ~~l~ 156 (157)
T cd00882 153 EELA 156 (157)
T ss_pred HHHh
Confidence 9985
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.71 E-value=6.9e-17 Score=179.43 Aligned_cols=152 Identities=25% Similarity=0.349 Sum_probs=111.9
Q ss_pred CCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhccccccCceEE
Q 046233 347 GAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRHTERCSALVH 424 (518)
Q Consensus 347 G~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~IerADvlL~ 424 (518)
|.||||||||+|+|++....++++|++|.+...+.+.++ +..+.+|||||+.+..... ..+...++. .+.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~-~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~-~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ-GEDIEIVDLPGIYSLTTFSLEEEVARDYLL-NEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC-CeEEEEEECCCccccCccchHHHHHHHHHh-hcCCCEEEE
Confidence 899999999999999988888999999999988888876 5689999999997643211 112222322 246899999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHH
Q 046233 425 VIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAA 504 (518)
Q Consensus 425 VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L 504 (518)
|+|+++.+. ....+ .++.. .++|+++|+||+|+.+......+.....+..+++++++||+++.|+++++++|
T Consensus 79 VvDat~ler--~l~l~-~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 79 VVDASNLER--NLYLT-LQLLE-----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EecCCcchh--hHHHH-HHHHh-----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 999987432 22222 22221 36899999999999754433233333344457899999999999999999999
Q ss_pred HHHH
Q 046233 505 YQLL 508 (518)
Q Consensus 505 ~e~L 508 (518)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 179
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=6.8e-17 Score=155.87 Aligned_cols=157 Identities=17% Similarity=0.178 Sum_probs=101.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC---CCCCceeeeceeeEEEec--------------------------------C
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI---ANYPFTTLLPNLGVVSFD--------------------------------Y 386 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I---a~ypfTTl~p~lg~v~~~--------------------------------~ 386 (518)
.|+++|..++|||||+.+|++..... .-....|+......+.+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999997652100 000011111111110000 0
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCC-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQP-EFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s-~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
...+.||||||+.. +...+++.+..+|++++|+|++.+.. ......+ ..+... ...|++||+||+|+
T Consensus 82 ~~~i~~iDtPG~~~-------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~~----~~~~iiivvNK~Dl 149 (203)
T cd01888 82 VRHVSFVDCPGHEI-------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEIM----GLKHIIIVQNKIDL 149 (203)
T ss_pred ccEEEEEECCChHH-------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHHc----CCCcEEEEEEchhc
Confidence 15799999999744 45567777888999999999987422 2223333 223322 23579999999999
Q ss_pred CCcccc---hHHHHHHHHhc---CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 466 PEAYEK---WPSFKEKLQAR---GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 466 ~~~~e~---~eel~~~l~~~---g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
...... .+.+.+.+... .++++++||+++.|+++|+++|.+.++.
T Consensus 150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 753321 23344444332 5689999999999999999999987764
No 180
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=4.2e-17 Score=164.77 Aligned_cols=164 Identities=24% Similarity=0.320 Sum_probs=119.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC-----CCcchhhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG-----FGLGHEFL 413 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~-----~gLg~~fL 413 (518)
...|++||.||||||||.|.+.+.+.. ++...-||....+|++.-+ ..++.++||||++...+.. ..+..+..
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 458999999999999999999998764 4778889999999999876 6899999999998643321 12333445
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHH---------------
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEK--------------- 478 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~--------------- 478 (518)
+.+..||+++.|+|+++....-.-. +...|+.| ...|-|+|+||+|.......+-.+...
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~y----s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPR-VLHMLEEY----SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChH-HHHHHHHH----hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 5678999999999999633322222 33445555 468999999999987644322222211
Q ss_pred -HHhc----------CC----ceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 479 -LQAR----------GI----EPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 479 -l~~~----------g~----~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
+... +| .+|++||++|+||++|.++|..+.+
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1111 13 4899999999999999999987764
No 181
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-16 Score=157.99 Aligned_cols=162 Identities=26% Similarity=0.412 Sum_probs=129.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
++|++||+|.+|||||+..++......+.|.|||+....|+++++ +..+++.|+||++++|++++|.+++.....+.||
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~-ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYN-GANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEec-CceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 689999999999999999999999999999999999999999998 6899999999999999999999999999999999
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCC---------------------------------------------------
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSP--------------------------------------------------- 449 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~--------------------------------------------------- 449 (518)
++++|+|++..+ .+-..|..+|+....
T Consensus 142 lilMvLDatk~e--~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 142 LILMVLDATKSE--DQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred EEEEEecCCcch--hHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999998632 223334444442110
Q ss_pred ---------------CCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 450 ---------------EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 450 ---------------~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.....+++.|.||+|...-+ ++-. ++.. ..-+-+|+....|++.|++.||+.+...
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~e----evdr-lAr~-PnsvViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIE----EVDR-LARQ-PNSVVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHH----HHHH-HhcC-CCcEEEEeccccCHHHHHHHHHHHhceE
Confidence 11235778888999976543 2222 2222 3456789999999999999999998753
No 182
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.71 E-value=9.9e-17 Score=144.59 Aligned_cols=157 Identities=23% Similarity=0.308 Sum_probs=103.8
Q ss_pred eeeeeCCCCCChhHHHHHHhc--cCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc------cCCCcchhhh
Q 046233 342 DVGIVGAPNAGKSTLLSVISA--AQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH------QGFGLGHEFL 413 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~--ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas------~~~gLg~~fL 413 (518)
+|+++|.+|||||||+++|++ ..+.....+++|..... +..+ ..+++|||||+..... ....+...++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN--DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc--CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 589999999999999999994 33344555555554322 2222 3899999999754211 1111334455
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHH--hcCCceEE
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQ--ARGIEPFC 488 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~--~~g~~i~~ 488 (518)
...+.++++++|+|.......... .+..++..+ ..|+++|+||+|+....+. ...+...++ ....++++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDL-EMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHH-HHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 555567899999999875433332 234455432 4799999999999644321 122333333 23468999
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q 046233 489 MSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L 508 (518)
+||+++.|+.+++++|.+++
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 151 FSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998763
No 183
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.70 E-value=1.3e-16 Score=148.46 Aligned_cols=158 Identities=23% Similarity=0.213 Sum_probs=116.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|.++|+.||||||++++|.+..+ +..-.|+-.++..+.+. +.++++||+.|+.. +...|-.+++.+|
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf~Iktl~~~-~~~L~iwDvGGq~~-------lr~~W~nYfestd 85 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGFQIKTLEYK-GYTLNIWDVGGQKT-------LRSYWKNYFESTD 85 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCc---cccCCccceeeEEEEec-ceEEEEEEcCCcch-------hHHHHHHhhhccC
Confidence 4788999999999999999998642 11122344444455565 57999999999865 3344556688999
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-----hHHHHHHHHhcCCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-----WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-----~eel~~~l~~~g~~i~~ISAktge 495 (518)
++|||+|.+++..+++-......+-. ...+...|++|++||.|+..+-.. .-.+.+.++...++++.|||.+|+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~-eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge 164 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLV-EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGE 164 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHh-hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccc
Confidence 99999999997766654433333322 556778999999999999843221 122334446668999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 046233 496 GTHEVISAAYQLLQK 510 (518)
Q Consensus 496 GI~eL~~~L~e~L~~ 510 (518)
++.+-++||...+.+
T Consensus 165 ~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 165 DLLEGIDWLCDDLMS 179 (185)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999988765
No 184
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.70 E-value=9.7e-17 Score=147.22 Aligned_cols=162 Identities=18% Similarity=0.101 Sum_probs=122.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCce-eeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFT-TLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfT-Tl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
+++.+++|.|++|||+|+.++....+. .+|..| ..+..+..+.++. ...++||||+|+..+.. ..-.+++
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs-~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt-------itstyyr 79 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFS-GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT-------ITSTYYR 79 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccc-cceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH-------HHHHHcc
Confidence 457789999999999999999987443 333322 2344555666653 35899999999876322 2334566
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
..+++++|+|+++.+++.....|..+++.- ....|-++|+||.|++...... ++.+.+....++.+|++||+...|
T Consensus 80 gthgv~vVYDVTn~ESF~Nv~rWLeei~~n---cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~N 156 (198)
T KOG0079|consen 80 GTHGVIVVYDVTNGESFNNVKRWLEEIRNN---CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENEN 156 (198)
T ss_pred CCceEEEEEECcchhhhHhHHHHHHHHHhc---CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhccc
Confidence 799999999999999988887777766633 3478999999999998765443 344555566799999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 046233 497 THEVISAAYQLLQKNK 512 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~ 512 (518)
++..|..|.+++.+.+
T Consensus 157 vE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 157 VEAMFHCITKQVLQAK 172 (198)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999988876554
No 185
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=6.1e-16 Score=149.58 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=109.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe--c-CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF--D-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~--~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.+|+++|.+|||||||++++....... .| .+|.........+ + ....+.+|||+|+..... +. ..++.
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----~~---~~~~~ 80 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEK-KY-IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----LR---DGYYI 80 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCccceEEEEEEEEECCeEEEEEEEECCCchhhhh----hh---HHHhc
Confidence 489999999999999998766543221 11 2233333333222 1 235789999999754211 22 22345
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.++++++|+|+++..++..+..|...+.... .+.|+++|+||+|+..... ...........++.++++||+++.|+
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKDRQV-KARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCccccC-CHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 6899999999999888877777666665432 4689999999999865422 23333455556789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|.+|.+.+..
T Consensus 157 ~~~f~~ia~~l~~ 169 (215)
T PTZ00132 157 EKPFLWLARRLTN 169 (215)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987754
No 186
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.5e-16 Score=146.19 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=124.7
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
.|.+.+|+|||..|+|||.|+++++..-+....-.....+.-+..+.++. ..+++||||+|+.+..+ +.+.+
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs----itqsy--- 76 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS----ITQSY--- 76 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH----HHHHH---
Confidence 46678999999999999999999997654333222223344445555543 35899999999977544 33444
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i~~ISAktg 494 (518)
++.|+++|+|+|++...++.-+..|..+++.|.. ...-.|+|+||+|+.+..+..+.+.+.+... .+-++++||+..
T Consensus 77 yrsahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea 154 (213)
T KOG0095|consen 77 YRSAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEA 154 (213)
T ss_pred hhhcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccch
Confidence 4559999999999998888888888888888853 2344688999999998877777776666543 567899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQLLQ 509 (518)
Q Consensus 495 eGI~eL~~~L~e~L~ 509 (518)
.|++.||..+.-.|-
T Consensus 155 ~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 155 DNVEKLFLDLACRLI 169 (213)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999998876654
No 187
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.69 E-value=1.1e-16 Score=163.77 Aligned_cols=105 Identities=35% Similarity=0.626 Sum_probs=91.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC----------------ceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD----------------STMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~----------------~~l~I~DTPGliegas~ 404 (518)
.++++||.||+|||||+|+|++.....++|||+|++|+.+.+...+. ..+++.|++|+..+||.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 38999999999999999999999888999999999999998887542 26999999999999999
Q ss_pred CCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHH
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELE 445 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~ 445 (518)
++||+..||.|++.+|++++|+++.. -++..+++.+..||.
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~ 151 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELR 151 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHH
Confidence 99999999999999999999999875 245566666665554
No 188
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.68 E-value=5.5e-16 Score=176.25 Aligned_cols=153 Identities=23% Similarity=0.177 Sum_probs=110.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+.|+|+|.+++|||||+++|..........++.|.+.....+.+. +..++||||||+..+ ...+.+.+..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~-~~~ItfiDTPGhe~F-------~~m~~rga~~ 360 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN-GGKITFLDTPGHEAF-------TAMRARGAQV 360 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC-CEEEEEEECCCCccc-------hhHHHhhhhh
Confidence 45689999999999999999998766554555666766555555555 478999999998653 2344566777
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-------c--CCceEEE
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-------R--GIEPFCM 489 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-------~--g~~i~~I 489 (518)
+|++|+|||+.+....+....|.. +. ..+.|+|||+||+|+.... .+.+...+.. . .++++++
T Consensus 361 aDiaILVVdAddGv~~qT~e~i~~-a~-----~~~vPiIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 361 TDIVVLVVAADDGVMPQTIEAINH-AK-----AAGVPIIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred CCEEEEEEECCCCCCHhHHHHHHH-HH-----hcCCcEEEEEECccccccC--HHHHHHHHHHhcccHHHhCCCceEEEE
Confidence 999999999988554444444432 22 2468999999999997532 2222222221 1 2689999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 046233 490 SAVKREGTHEVISAAYQL 507 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~ 507 (518)
||++|.||++|+++|...
T Consensus 433 SAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 433 SAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eCCCCCCchHHHHhhhhh
Confidence 999999999999999754
No 189
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.68 E-value=1.9e-16 Score=153.38 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=98.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCC-------------------------------CCCceeeeceeeEEEecCCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIA-------------------------------NYPFTTLLPNLGVVSFDYDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia-------------------------------~ypfTTl~p~lg~v~~~~~~~l 390 (518)
+|++||.+|||||||+++|+.....+. ....+|+++....+.+. +.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP-KRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC-CceE
Confidence 589999999999999999975433221 12566777777777665 5789
Q ss_pred EEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc
Q 046233 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e 470 (518)
.||||||+.+ +...+...+..+|++|+|+|++......... +...+... ...++|+|+||+|+.....
T Consensus 80 ~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~~----~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 80 IIADTPGHEQ-------YTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSLL----GIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHHc----CCCcEEEEEEchhcccCCH
Confidence 9999999754 2234555678899999999998754333222 22233322 2245788999999975321
Q ss_pred -c----hHHHHHHHHhcC---CceEEEeccCCCCHHHHH
Q 046233 471 -K----WPSFKEKLQARG---IEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 471 -~----~eel~~~l~~~g---~~i~~ISAktgeGI~eL~ 501 (518)
. ..++.+.+...+ .++++|||+++.|+.+..
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 1 223333344444 458999999999997643
No 190
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=7.8e-17 Score=149.27 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=123.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceee--EEEec-CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLG--VVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg--~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
++|+|+|..-+|||||+-+++..++. ....+|+...+- .+.+. ....+.||||+|+.+... |+..|+|.
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn--~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA----LGPIYYRg-- 85 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFN--CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA----LGPIYYRG-- 85 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcc--hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc----cCceEEeC--
Confidence 58999999999999999999977542 333344432211 12222 134789999999977543 66666655
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
++.+++|+|+++.++++..+.|..+|+...- ..+.++||+||+||.....+. ++.....+..+..++++||+.+.|
T Consensus 86 -SnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 86 -SNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred -CCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 8999999999999999999999999885432 357789999999998765543 333334445588999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhhhc
Q 046233 497 THEVISAAYQLLQKNKEAEER 517 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~~~~~R 517 (518)
|.+||+.|...+-+....++|
T Consensus 163 i~elFe~Lt~~MiE~~s~~qr 183 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHSSQRQR 183 (218)
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 999999999888776654443
No 191
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=3.6e-16 Score=176.45 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=111.2
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec---CCceEEEEcCCCCccccccCCCcchhhhc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~---~~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
...+.|+|+|.+++|||||+++|+.........++.|.+.....+.+. ....++||||||+.. +...+.+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-------F~~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-------FSSMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHH-------HHHHHHH
Confidence 345789999999999999999999876655444555655443333332 246899999999854 2233455
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-------c--CCc
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-------R--GIE 485 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-------~--g~~ 485 (518)
.+..||++|+|||+.+....+.++.+.. +. ..+.|+|||+||+|+.... .+.+.+.+.. . .++
T Consensus 315 g~~~aDiaILVVDA~dGv~~QT~E~I~~-~k-----~~~iPiIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g~~vp 386 (742)
T CHL00189 315 GANVTDIAILIIAADDGVKPQTIEAINY-IQ-----AANVPIIVAINKIDKANAN--TERIKQQLAKYNLIPEKWGGDTP 386 (742)
T ss_pred HHHHCCEEEEEEECcCCCChhhHHHHHH-HH-----hcCceEEEEEECCCccccC--HHHHHHHHHHhccchHhhCCCce
Confidence 6788999999999988655555554433 22 2468999999999997532 2333333322 1 268
Q ss_pred eEEEeccCCCCHHHHHHHHHHHH
Q 046233 486 PFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 486 i~~ISAktgeGI~eL~~~L~e~L 508 (518)
++++||++|.||++|+++|..+.
T Consensus 387 vv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 387 MIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEEEECCCCCCHHHHHHhhhhhh
Confidence 99999999999999999998764
No 192
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.68 E-value=4.4e-16 Score=172.77 Aligned_cols=157 Identities=19% Similarity=0.164 Sum_probs=113.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC---CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP---TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~---~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.|+++|.+|+|||||+++|++... .....+++|++.....+.++ +..+.+|||||+.. +...++..+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-~~~v~~iDtPGhe~-------f~~~~~~g~~~ 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-DYRLGFIDVPGHEK-------FISNAIAGGGG 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-CEEEEEEECCCHHH-------HHHHHHhhhcc
Confidence 589999999999999999997432 11234566777666666666 37899999999754 34456667788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccc---hHHHHHHHHhc----CCceEEEe
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEK---WPSFKEKLQAR----GIEPFCMS 490 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~---~eel~~~l~~~----g~~i~~IS 490 (518)
+|++++|+|+++....+..+.+. .+.. .+.| ++||+||+|+.+.... .+++.+.+... +++++++|
T Consensus 74 aD~aILVVDa~~G~~~qT~ehl~-il~~-----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 74 IDAALLVVDADEGVMTQTGEHLA-VLDL-----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred CCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 99999999999854344444332 2332 3567 9999999999864321 22344444433 47899999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhh
Q 046233 491 AVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~~~~ 512 (518)
|++|.|+++++.+|.+++....
T Consensus 148 A~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCCCCCchhHHHHHHHHHHhCC
Confidence 9999999999999988877643
No 193
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.68 E-value=3.3e-16 Score=174.10 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=109.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCC---------------CCceeeeceeeEEEec--C--CceEEEEcCCCCc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIAN---------------YPFTTLLPNLGVVSFD--Y--DSTMVVADLPGLL 399 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~---------------ypfTTl~p~lg~v~~~--~--~~~l~I~DTPGli 399 (518)
.+.+|++||.+++|||||+++|+.....+.. ....|+....-.+.+. + ...+.||||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 3568999999999999999999875322211 1133443332233332 1 2578999999987
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--chHHHHH
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KWPSFKE 477 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~ 477 (518)
+. ...+.+.++.||++|+|+|+++....++...|..++. .+.|+++|+||+|+..... ..+++.+
T Consensus 82 dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~~~~~~~el~~ 148 (595)
T TIGR01393 82 DF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSADPERVKKEIEE 148 (595)
T ss_pred HH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccCHHHHHHHHHH
Confidence 63 3345667788999999999998777666666655443 3579999999999975321 1122222
Q ss_pred HHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 478 KLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 478 ~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.+......++++||++|.|+++|+++|.+.++..
T Consensus 149 ~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 149 VIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 2211112589999999999999999999888654
No 194
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=6.1e-16 Score=149.06 Aligned_cols=162 Identities=22% Similarity=0.274 Sum_probs=117.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccC--CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc------ccCCCcch
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQ--PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA------HQGFGLGH 410 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak--~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega------s~~~gLg~ 410 (518)
..+.|+++|.+|||||||||+|++.+ .+++..|+.|..++...+. ..+.++|+||+.-.. ..-..+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 35689999999999999999999977 5778999999987765443 348999999985311 00112334
Q ss_pred hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch---HHHHHHHHhc-CCc-
Q 046233 411 EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQAR-GIE- 485 (518)
Q Consensus 411 ~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~---eel~~~l~~~-g~~- 485 (518)
.|++.-+.-.++++|+|+.++....+.+. .++|.. .+.|++||+||+|.....+.. ..+++.+... .+.
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em-~~~l~~-----~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREM-IEFLLE-----LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHH-HHHHHH-----cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence 44544455788999999998766655543 455553 468999999999998765442 3333333222 223
Q ss_pred -eEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 486 -PFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 486 -i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
++.+|+.++.|+++|...|.+.+..
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhhc
Confidence 8889999999999999999988764
No 195
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=1.8e-16 Score=138.72 Aligned_cols=113 Identities=29% Similarity=0.491 Sum_probs=88.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCC--Ccchhhhccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGF--GLGHEFLRHTER 418 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~--gLg~~fLr~Ier 418 (518)
+|+|+|.+|||||||+|+|++.+. .++..+++|..+..+.+.+. ...+.++||||+.+...... .....+++.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN-NKKFILVDTPGINDGESQDNDGKEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET-TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeec-eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence 589999999999999999998643 56888999999977777776 57889999999987544322 133457888899
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
+|+++||+|++. ........+..+|+ ..+|+++|+||
T Consensus 80 ~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 999999999776 22344555556663 57899999998
No 196
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=8e-16 Score=143.27 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=119.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.++.+||.+-+||||||..++..+..--.-|....+.....+.+. ...++++|||+|+.+..+ +...+ +++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrs----itksy---yrn 81 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS----ITKSY---YRN 81 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH----HHHHH---hhc
Confidence 356799999999999999999876543222222222222223333 235789999999977544 33444 455
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+-.+++|+|+++..+++....|..+.+++-..-...-+++|+.|+||....++. ++...+.+.+++.++++||+++.|+
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence 889999999999999999999988877665433344468899999999776654 4455555667999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++.|..|.+.+...
T Consensus 162 eEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQA 175 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876554
No 197
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=1.1e-15 Score=147.67 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=96.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC----------------CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT----------------IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~----------------Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~ 404 (518)
.+|+++|.+++|||||+++|+..... ......+|+......+... +.++.++||||+..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-~~~i~~iDtPG~~~---- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA-NRHYAHVDCPGHAD---- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC-CeEEEEEECcCHHH----
Confidence 37999999999999999999864110 0113455666544444433 56899999999754
Q ss_pred CCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchH----HHHHHH
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWP----SFKEKL 479 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~e----el~~~l 479 (518)
+.....+.+..+|++++|+|+...-...+... ...+.. .++| +|+|+||+|+....+..+ ++.+.+
T Consensus 78 ---~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~-~~~~~~-----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 78 ---YIKNMITGAAQMDGAILVVSATDGPMPQTREH-LLLARQ-----VGVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred ---HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHH-HHHHHH-----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 44455667788999999999987544333333 333432 3456 778999999974333222 344445
Q ss_pred Hhc-----CCceEEEeccCCCCH
Q 046233 480 QAR-----GIEPFCMSAVKREGT 497 (518)
Q Consensus 480 ~~~-----g~~i~~ISAktgeGI 497 (518)
... .++++++||++|.|+
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHhcccccCCeEEEeeCccccCC
Confidence 443 368999999999985
No 198
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=7.2e-16 Score=146.06 Aligned_cols=157 Identities=25% Similarity=0.291 Sum_probs=118.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|..||||||++.+|...+.-.. ..|+..++..+.+. ..+|++||+.|+.. +...|..++..++
T Consensus 18 ~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~yk-n~~f~vWDvGGq~k-------~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 18 MRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYK-NISFTVWDVGGQEK-------LRPLWKHYFQNTQ 86 (181)
T ss_pred EEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEc-ceEEEEEecCCCcc-------cccchhhhccCCc
Confidence 4899999999999999999987654222 33555666677887 68999999999854 3344666678899
Q ss_pred ceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCC
Q 046233 421 ALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKR 494 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktg 494 (518)
++|||+|+++++.....+ .+...|. .+.+...|+++.+||.|++.+.. ..++.+.+. .+.+.+..|+|.+|
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~--~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~iq~~~a~~G 163 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLA--EPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWHIQSTCAISG 163 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHc--CcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcEEeecccccc
Confidence 999999999987765532 2333332 23467899999999999997754 334444443 24678999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
+|+.+-++||.+.+...
T Consensus 164 ~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 164 EGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccHHHHHHHHHHHHhcc
Confidence 99999999999988653
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.64 E-value=1.4e-15 Score=162.55 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=101.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCC-------------------------------CCCceeeeceeeEEEecCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIA-------------------------------NYPFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia-------------------------------~ypfTTl~p~lg~v~~~~~~ 388 (518)
..+|+++|.+|+|||||+++|+.....+. ..+.+|++.....+... +.
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~-~~ 84 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD-KY 84 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC-Ce
Confidence 35899999999999999999985432221 14677888777777665 57
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCC--CCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSA--EQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~--~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.+.||||||+.+ +...+...+..+|++|+|+|+++ .........+ ..+..+ ...|++||+||+|+.
T Consensus 85 ~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~-~~~~~~----~~~~iivviNK~Dl~ 152 (425)
T PRK12317 85 YFTIVDCPGHRD-------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHV-FLARTL----GINQLIVAINKMDAV 152 (425)
T ss_pred EEEEEECCCccc-------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHH-HHHHHc----CCCeEEEEEEccccc
Confidence 899999999754 33344555678999999999987 3222222222 222222 224699999999997
Q ss_pred Cccc-c----hHHHHHHHHhcC-----CceEEEeccCCCCHHHHH
Q 046233 467 EAYE-K----WPSFKEKLQARG-----IEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 467 ~~~e-~----~eel~~~l~~~g-----~~i~~ISAktgeGI~eL~ 501 (518)
...+ . .+++.+.+...+ +++++|||++|.|++++.
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 5221 1 234444444433 579999999999998743
No 200
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-15 Score=139.36 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=116.5
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.+.+++++|..|.|||+|+.++...+.+-.......++....++.++. ..+++||||+|+.++.+ +.+.| ++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS----VtRsY---YR 80 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS----VTRSY---YR 80 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH----HHHHH---hc
Confidence 467899999999999999999998766543333222233333344432 25799999999977443 33444 45
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.|...++|+|+++++++..+..|....+...+ .++-+|+++||.||....++. .+...+.....+.++++||++|+|
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN 158 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 158 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence 58899999999999998887777666664443 466788899999998776653 334444455567899999999999
Q ss_pred HHHHHHHHHHHHH
Q 046233 497 THEVISAAYQLLQ 509 (518)
Q Consensus 497 I~eL~~~L~e~L~ 509 (518)
+++.|-...+.+-
T Consensus 159 VEEaFl~c~~tIl 171 (214)
T KOG0086|consen 159 VEEAFLKCARTIL 171 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887665543
No 201
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.63 E-value=4.2e-15 Score=164.85 Aligned_cols=156 Identities=21% Similarity=0.201 Sum_probs=99.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-----------------CceEEEEcCCCCccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-----------------DSTMVVADLPGLLEGAH 403 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-----------------~~~l~I~DTPGliegas 403 (518)
+-|+++|.+|+|||||+++|++..........+|.+.....+..+. ...+.||||||+....
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~- 83 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT- 83 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH-
Confidence 4699999999999999999998754332222233322111111110 0248999999985422
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------------
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE------------- 470 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e------------- 470 (518)
..+.+.++.||++++|+|+++....++++.+. .+.. .+.|+++|+||+|+.....
T Consensus 84 ------~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~l~~-----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 84 ------NLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM-----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred ------HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-HHHH-----cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 22344567899999999999755445554443 2321 3689999999999964210
Q ss_pred chHHH-----------HHHHHhc---------------CCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 471 KWPSF-----------KEKLQAR---------------GIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 471 ~~eel-----------~~~l~~~---------------g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
....+ ...+... ..+++++||++|+|+++|+.+|..+..
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 00000 0112211 358999999999999999999876544
No 202
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.63 E-value=2.8e-15 Score=166.91 Aligned_cols=159 Identities=24% Similarity=0.294 Sum_probs=109.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCC---------C------CCceeeeceeeEEEec----CCceEEEEcCCCC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIA---------N------YPFTTLLPNLGVVSFD----YDSTMVVADLPGL 398 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia---------~------ypfTTl~p~lg~v~~~----~~~~l~I~DTPGl 398 (518)
+.+.+|++||..++|||||+.+|+.....+. + ....|+....-.+.+. ....+.||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3466899999999999999999976422111 1 1233443333333332 1357999999998
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHH
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEK 478 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~ 478 (518)
.+. ...+.+.++.||++|+|+|+++.....+...|...+. .+.|+++|+||+|+.... ...+.+.
T Consensus 85 ~dF-------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~a~--~~~v~~e 149 (600)
T PRK05433 85 VDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPAAD--PERVKQE 149 (600)
T ss_pred HHH-------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCccc--HHHHHHH
Confidence 763 3345667788999999999998766666555544332 368999999999997532 1222222
Q ss_pred HHh-cCC---ceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 479 LQA-RGI---EPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 479 l~~-~g~---~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+.. .++ .++++||+++.|+++|+++|.+.++..
T Consensus 150 i~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 150 IEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 222 233 489999999999999999999988754
No 203
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.62 E-value=5.2e-15 Score=165.08 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=109.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC---CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP---TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~---~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
-|+++|.+++|||||+++|++... ........|++.....+....+..+.+|||||+.. +...++..+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------fi~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------FLSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------HHHHHHHHhhc
Confidence 378999999999999999997432 12233566776655555444456789999999854 33456667888
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCccc---chHHHHHHHHhcC---CceEEEec
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYE---KWPSFKEKLQARG---IEPFCMSA 491 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e---~~eel~~~l~~~g---~~i~~ISA 491 (518)
+|++++|+|+...-..++.+.+ ..+.. .+.| ++||+||+|+.+... ..+++.+.+...+ .+++++||
T Consensus 75 ~D~~lLVVda~eg~~~qT~ehl-~il~~-----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA 148 (614)
T PRK10512 75 IDHALLVVACDDGVMAQTREHL-AILQL-----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAA 148 (614)
T ss_pred CCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeC
Confidence 9999999999875444444443 33432 2345 579999999975322 1234444444433 68999999
Q ss_pred cCCCCHHHHHHHHHHHHHh
Q 046233 492 VKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 492 ktgeGI~eL~~~L~e~L~~ 510 (518)
++|.|+++|+++|.++...
T Consensus 149 ~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 149 TEGRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCCCHHHHHHHHHhhcc
Confidence 9999999999999877654
No 204
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.61 E-value=1.4e-15 Score=159.43 Aligned_cols=106 Identities=38% Similarity=0.569 Sum_probs=92.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCC----------------ceEEEEcCCCCccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYD----------------STMVVADLPGLLEGAH 403 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~----------------~~l~I~DTPGliegas 403 (518)
.+++|||+||+|||||+++|++... .+++|||||+.|+.|++.+.+. ..+.++|+||++.+++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4789999999999999999999999 8999999999999999998753 2689999999999999
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCC----------CCHHHHHHHHHHHHh
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAE----------QPEFEFDAVRLELEM 446 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~----------~s~e~~~~L~~eL~~ 446 (518)
++.+++..||.|++.||++++|+|+... ++..++..+..+|.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l 135 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLK 135 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999642 455666666555543
No 205
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.61 E-value=9.5e-15 Score=141.42 Aligned_cols=161 Identities=17% Similarity=0.070 Sum_probs=120.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|+|||+|+.++....+ +..|..|.-+.....+.++. ...+.|+||+|+.+... + --.++..+
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f-~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~----~---~~~~~~~~ 75 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTIQFLTGRF-VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA----M---RDLYIRNG 75 (196)
T ss_pred eEEEEECCCCCCcchheeeeccccc-ccccCCCccccceEEEEECCEEEEEEEEcCCCcccChH----H---HHHhhccC
Confidence 4899999999999999999988654 33454444444444455542 24688999999655322 1 22346678
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
++.++|++++++.+++.+..++..+ .........|+++|+||+|+....... ++-.......+++++++||+...+++
T Consensus 76 ~gF~lVysitd~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 76 DGFLLVYSITDRSSFEEAKQLREQI-LRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVD 154 (196)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHH-HHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHH
Confidence 9999999999999999999888887 333344568999999999998755443 33444445567899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
++|..|...+..
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.60 E-value=4.2e-15 Score=145.21 Aligned_cols=144 Identities=18% Similarity=0.185 Sum_probs=95.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEecCCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFDYDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~~~~~l 390 (518)
.|+++|.+++|||||+.+|+.....+ .....+|++.....+.+. +..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~-~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE-KYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC-CeEE
Confidence 48999999999999999996321100 113456677666666665 5789
Q ss_pred EEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCC-------HHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 046233 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQP-------EFEFDAVRLELEMFSPEIAEKPYIVAFNKM 463 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s-------~e~~~~L~~eL~~~~~~l~~kPiIVVlNKi 463 (518)
.+|||||+.+ +...+++.+..+|++|+|+|+++... .+....+ ..+.. ...+|+|||+||+
T Consensus 80 ~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~iiivvNK~ 147 (219)
T cd01883 80 TILDAPGHRD-------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART----LGVKQLIVAVNKM 147 (219)
T ss_pred EEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH----cCCCeEEEEEEcc
Confidence 9999999754 33456667788999999999987421 1122222 22221 2347899999999
Q ss_pred CCCCc---ccchH----HHHHHHHhc-----CCceEEEeccCCCCHH
Q 046233 464 DLPEA---YEKWP----SFKEKLQAR-----GIEPFCMSAVKREGTH 498 (518)
Q Consensus 464 DL~~~---~e~~e----el~~~l~~~-----g~~i~~ISAktgeGI~ 498 (518)
|+... ....+ .+...+... .+++++|||++|.||+
T Consensus 148 Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 99832 12122 333334433 3679999999999987
No 207
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.60 E-value=3e-14 Score=138.42 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=96.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec------CCceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD------YDSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~------~~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
+|+++|.++||||||+++++...+.....+..........+.+. ....+.||||+|+..... +... +
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~----l~~~---~ 74 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS----TRAV---F 74 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH----HHHH---H
Confidence 78999999999999999999876533222222112222334442 124689999999865321 2233 3
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC-----------------CCCCCCEEEEEeCCCCCCcccchH-----
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSP-----------------EIAEKPYIVAFNKMDLPEAYEKWP----- 473 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-----------------~l~~kPiIVVlNKiDL~~~~e~~e----- 473 (518)
+..++++|+|+|++++.+++.+..|..++..... .....|+|||+||+|+........
T Consensus 75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~ 154 (202)
T cd04102 75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLT 154 (202)
T ss_pred hCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhh
Confidence 5569999999999999999998888877754321 113689999999999975432211
Q ss_pred HHHHHHHhcCCceEEEeccCC
Q 046233 474 SFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 474 el~~~l~~~g~~i~~ISAktg 494 (518)
.......+.+.+.+.+++...
T Consensus 155 ~~~~ia~~~~~~~i~~~c~~~ 175 (202)
T cd04102 155 ARGFVAEQGNAEEINLNCTNG 175 (202)
T ss_pred HhhhHHHhcCCceEEEecCCc
Confidence 111223345778888888743
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.60 E-value=1.4e-14 Score=161.21 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=112.4
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC----------------CCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
+.+.+|+++|..++|||||+.+|+.....+ ......|+......+.+. +..+.+|||||+.+
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-~~~inliDTPG~~d- 80 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-DYRINIVDTPGHAD- 80 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-CEEEEEEECCCcch-
Confidence 346799999999999999999998632211 112344555555555554 57899999999866
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEKL 479 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~l 479 (518)
+...+.+.++.+|++|+|+|+++....+....|...+. .++|.+||+||+|+..+. ..++++.+.+
T Consensus 81 ------f~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~------~gip~IVviNKiD~~~a~~~~vl~ei~~l~ 148 (607)
T PRK10218 81 ------FGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA------YGLKPIVVINKVDRPGARPDWVVDQVFDLF 148 (607)
T ss_pred ------hHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH------cCCCEEEEEECcCCCCCchhHHHHHHHHHH
Confidence 33345666788999999999987544333333333222 468999999999997542 2344555554
Q ss_pred Hh-------cCCceEEEeccCCC----------CHHHHHHHHHHHHHhh
Q 046233 480 QA-------RGIEPFCMSAVKRE----------GTHEVISAAYQLLQKN 511 (518)
Q Consensus 480 ~~-------~g~~i~~ISAktge----------GI~eL~~~L~e~L~~~ 511 (518)
.. ..++++++||++|. |+..|++.|.+.++..
T Consensus 149 ~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 149 VNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred hccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 32 25789999999998 5889999998887654
No 209
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.59 E-value=9.3e-15 Score=162.48 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=111.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCC----------------CCCceeeeceeeEEEecCCceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIA----------------NYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----------------~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~ 404 (518)
.+|++||..++|||||+.+|+.....+. .....|+......+.+. +..+.||||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~-~~kinlIDTPGh~D---- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN-GTKINIVDTPGHAD---- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC-CEEEEEEECCCHHH----
Confidence 5799999999999999999986422111 11245555555556665 57999999999865
Q ss_pred CCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHHHHh-
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEKLQA- 481 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~l~~- 481 (518)
+.....+.+..+|++|+|+|++.... .+...++..+.. .+.|+|||+||+|+.... +...++.+.+..
T Consensus 77 ---F~~ev~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~-----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 77 ---FGGEVERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAEL 147 (594)
T ss_pred ---HHHHHHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH-----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh
Confidence 33455667788999999999987433 333334444432 368999999999997542 234455555532
Q ss_pred ------cCCceEEEeccCCC----------CHHHHHHHHHHHHHhh
Q 046233 482 ------RGIEPFCMSAVKRE----------GTHEVISAAYQLLQKN 511 (518)
Q Consensus 482 ------~g~~i~~ISAktge----------GI~eL~~~L~e~L~~~ 511 (518)
..++++++||+++. |+..|++.|.+.++..
T Consensus 148 g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 148 GADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 24689999999996 7999999999988754
No 210
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.59 E-value=1.4e-14 Score=140.20 Aligned_cols=155 Identities=19% Similarity=0.245 Sum_probs=99.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec---CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~---~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
+.|+|+|+++||||||+++|+...... .+ ++..++...+... ....+.||||||+.+ +...+..++.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t~--~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~~~~~~ 70 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-TV--TSIEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKLLETLK 70 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-cc--CcEeecceEEEeecCCCCceEEEEECCCCHH-------HHHHHHHHHh
Confidence 368999999999999999999865422 22 2334455544432 246799999999865 3344556677
Q ss_pred cc-CceEEEEeCCCC-CCHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-------------
Q 046233 418 RC-SALVHVIDGSAE-QPEFEFDA-VRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA------------- 481 (518)
Q Consensus 418 rA-DvlL~VVDaS~~-~s~e~~~~-L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~------------- 481 (518)
.+ +++|||+|+++. ........ |...+..........|++||+||+|+..+... +.+++.++.
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~-~~i~~~le~ei~~~~~~r~~~l 149 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA-KKIKEQLEKELNTLRESRSKSL 149 (203)
T ss_pred ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH-HHHHHHHHHHHHHHHHHHhccc
Confidence 77 999999999986 34333322 22222221111247899999999999754321 111111110
Q ss_pred ---------------------------cCCceEEEeccCCC-CHHHHHHHHHH
Q 046233 482 ---------------------------RGIEPFCMSAVKRE-GTHEVISAAYQ 506 (518)
Q Consensus 482 ---------------------------~g~~i~~ISAktge-GI~eL~~~L~e 506 (518)
..+.++.+|++.+. |++.+.+||.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 150 SSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 01357888998776 69999999875
No 211
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.59 E-value=3e-15 Score=137.36 Aligned_cols=157 Identities=25% Similarity=0.283 Sum_probs=114.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
-..+.+||..|+|||||+|.+..... ..+-..|.-.++..++-+ ...+.+||+||+..+. ..|-++.+.+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkg-nvtiklwD~gGq~rfr-------smWerycR~v 89 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKG-NVTIKLWDLGGQPRFR-------SMWERYCRGV 89 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccC-ceEEEEEecCCCccHH-------HHHHHHhhcC
Confidence 34678999999999999999876433 223333555555555543 4689999999997643 3466777889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH--hcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEecc
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELE--MFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAV 492 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~--~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAk 492 (518)
++++||+|+++++.+... +.||+ ++.+.+..+|++|++||.|++.+-.. ..+.+.+. .+.+.+|.||++
T Consensus 90 ~aivY~VDaad~~k~~~s---r~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~-~~li~rmgL~sitdREvcC~siSck 165 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEAS---RSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK-IALIERMGLSSITDREVCCFSISCK 165 (186)
T ss_pred cEEEEEeecCCcccchhh---HHHHHHHhcchhhcCCcEEEecccccCcccccH-HHHHHHhCccccccceEEEEEEEEc
Confidence 999999999997765443 34443 34677889999999999999876543 23333332 224578999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 046233 493 KREGTHEVISAAYQLLQK 510 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~ 510 (518)
...||+.+.+||.+.-..
T Consensus 166 e~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 166 EKVNIDITLDWLIEHSKS 183 (186)
T ss_pred CCccHHHHHHHHHHHhhh
Confidence 999999999999987654
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.59 E-value=1e-14 Score=156.08 Aligned_cols=147 Identities=18% Similarity=0.151 Sum_probs=98.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEecCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~~~~ 388 (518)
..+|+++|.+++|||||+.+|+.....+ .....+|++.....+..+ ..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~-~~ 85 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD-KY 85 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC-Ce
Confidence 4589999999999999999998532111 012356676666555554 57
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCH---HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE---FEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~---e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
.+.||||||+.+ +...++..+..+|++|+|+|+++.... ..... ...+..+ ...|+|||+||+|+
T Consensus 86 ~i~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~-~~~~~~~----~~~~iIVviNK~Dl 153 (426)
T TIGR00483 86 EVTIVDCPGHRD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREH-AFLARTL----GINQLIVAINKMDS 153 (426)
T ss_pred EEEEEECCCHHH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHH-HHHHHHc----CCCeEEEEEEChhc
Confidence 899999999754 334455667789999999999986322 11111 1112211 23579999999999
Q ss_pred CCcc-cc----hHHHHHHHHhcC-----CceEEEeccCCCCHHH
Q 046233 466 PEAY-EK----WPSFKEKLQARG-----IEPFCMSAVKREGTHE 499 (518)
Q Consensus 466 ~~~~-e~----~eel~~~l~~~g-----~~i~~ISAktgeGI~e 499 (518)
.... +. ..++.+.++..+ +++++|||+++.||.+
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 7422 11 234444454433 5799999999999986
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.58 E-value=7e-15 Score=156.61 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=102.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC---CCCCceeeeceeeEE--------------Ee----c-------CCceEEE
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI---ANYPFTTLLPNLGVV--------------SF----D-------YDSTMVV 392 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I---a~ypfTTl~p~lg~v--------------~~----~-------~~~~l~I 392 (518)
.+|+++|.+++|||||+++|++..... .-....|+...+... .. + ....+++
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 379999999999999999998642210 001112222111000 00 0 1357999
Q ss_pred EcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc
Q 046233 393 ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK 471 (518)
Q Consensus 393 ~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~ 471 (518)
|||||+.+ +...++..+..+|++|+|+|++... ..+..+.+. .+... ..+|++||+||+|+......
T Consensus 85 iDtPGh~~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~----gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 85 VDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEII----GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EECCCHHH-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHc----CCCeEEEEEEccccCCHHHH
Confidence 99999855 3445677777899999999999753 223333332 23322 23579999999999864321
Q ss_pred ---hHHHHHHHHhc---CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 472 ---WPSFKEKLQAR---GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 472 ---~eel~~~l~~~---g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
.+++.+.+... .++++++||+++.|+++|+++|...++.
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 23344444332 5689999999999999999999987653
No 214
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=1.1e-14 Score=134.23 Aligned_cols=140 Identities=22% Similarity=0.295 Sum_probs=99.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|.|||..+||||||+++|.+.... |.- |. .+.+.+ .++||||-.- ++..+.+.++.....||
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---~~K-Tq-----~i~~~~----~~IDTPGEyi---E~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---YKK-TQ-----AIEYYD----NTIDTPGEYI---ENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---cCc-cc-----eeEecc----cEEECChhhe---eCHHHHHHHHHHHhhCC
Confidence 47899999999999999999986432 111 11 122221 4599999532 12223444444567899
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI~e 499 (518)
++++|.|++.+...-.- ... ...++|+|=|+||+|+......++..+++|+..++ .+|.+|+.+++||++
T Consensus 66 ~V~ll~dat~~~~~~pP----~fa-----~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 66 VVLLLQDATEPRSVFPP----GFA-----SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEE 136 (143)
T ss_pred EEEEEecCCCCCccCCc----hhh-----cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence 99999999986432111 011 12468999999999999555667778888887766 689999999999999
Q ss_pred HHHHHH
Q 046233 500 VISAAY 505 (518)
Q Consensus 500 L~~~L~ 505 (518)
|.++|.
T Consensus 137 L~~~L~ 142 (143)
T PF10662_consen 137 LKDYLE 142 (143)
T ss_pred HHHHHh
Confidence 999885
No 215
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.57 E-value=5.9e-14 Score=134.82 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=108.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+++|.+|||||||+++|....+.....+ |............. ...+.+|||+|+.+... .+-.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~-------~~~~y~~~ 77 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP-TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS-------LRPEYYRG 77 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCC-ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH-------HHHHHhcC
Confidence 5899999999999999999998765433222 22222222222222 35689999999976321 23334566
Q ss_pred cCceEEEEeCCC-CCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHH-------------HHHHh---
Q 046233 419 CSALVHVIDGSA-EQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFK-------------EKLQA--- 481 (518)
Q Consensus 419 ADvlL~VVDaS~-~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~-------------~~l~~--- 481 (518)
++++++|+|... ....+....|..++..... ...|+++|+||+|+.........+. .....
T Consensus 78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (219)
T COG1100 78 ANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEV 155 (219)
T ss_pred CCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhh
Confidence 999999999998 4455555666666664432 4689999999999987643211111 11111
Q ss_pred cCCceEEEecc--CCCCHHHHHHHHHHHHHhh
Q 046233 482 RGIEPFCMSAV--KREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 482 ~g~~i~~ISAk--tgeGI~eL~~~L~e~L~~~ 511 (518)
....++.+||+ .+.++.+++..+...+...
T Consensus 156 ~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 156 ANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred cccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 12348999999 9999999999999888643
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.57 E-value=1.3e-14 Score=154.83 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=104.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC---CCCCCceeeeceeeEEEe------------------c-------CCceEEE
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT---IANYPFTTLLPNLGVVSF------------------D-------YDSTMVV 392 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~ypfTTl~p~lg~v~~------------------~-------~~~~l~I 392 (518)
.+|+++|..++|||||+.+|++.... .......|+...+....+ + ....+.|
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 89 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSF 89 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 47999999999999999999764111 111223444432211111 0 0257999
Q ss_pred EcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc
Q 046233 393 ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK 471 (518)
Q Consensus 393 ~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~ 471 (518)
|||||+.+ +...+++.+..+|++++|+|++.+. .......+ ..+... ..+|+++|+||+|+......
T Consensus 90 iDtPG~~~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~----~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 90 VDAPGHET-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII----GIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EECCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc----CCCcEEEEEEeeccccchhH
Confidence 99999754 4456777777889999999999754 23333333 233322 23579999999999764332
Q ss_pred ---hHHHHHHHHhc---CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 472 ---WPSFKEKLQAR---GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 472 ---~eel~~~l~~~---g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
.+++...+... .++++++||+++.|+++|+++|...++.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 23344444321 4689999999999999999999987754
No 217
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-14 Score=144.66 Aligned_cols=163 Identities=29% Similarity=0.400 Sum_probs=129.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.++|+++|+|.+|||||+..|++....++.|.|||+....|++.+. +.++++.|+||++++|..+++.+.+.+...+.|
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~-gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYK-GAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecc-ccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3689999999999999999999998899999999999999999887 689999999999999999999999999999999
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCC--------------------------------------------------
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSP-------------------------------------------------- 449 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-------------------------------------------------- 449 (518)
.++++|+|+..+-+ .-+.+..+|+-+..
T Consensus 138 nli~~vld~~kp~~--hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~D 215 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS--HKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFD 215 (358)
T ss_pred cEEEEEeeccCccc--HHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecC
Confidence 99999999975422 22223333332110
Q ss_pred ------------CCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 450 ------------EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 450 ------------~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.....|.+.++||+|...-++. + +.......+++||-+++|+++|++.+++.+.-.
T Consensus 216 aT~DdLIdvVegnr~yVp~iyvLNkIdsISiEEL-d-----ii~~iphavpISA~~~wn~d~lL~~mweyL~Lv 283 (358)
T KOG1487|consen 216 ATADDLIDVVEGNRIYVPCIYVLNKIDSISIEEL-D-----IIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLV 283 (358)
T ss_pred cchhhhhhhhccCceeeeeeeeecccceeeeecc-c-----eeeeccceeecccccccchHHHHHHHhhcchhe
Confidence 1124688899999997654332 1 111234789999999999999999999987643
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.56 E-value=5.2e-14 Score=156.40 Aligned_cols=155 Identities=21% Similarity=0.183 Sum_probs=95.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-----------------CceEEEEcCCCCccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-----------------DSTMVVADLPGLLEGAH 403 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-----------------~~~l~I~DTPGliegas 403 (518)
+-|+++|.+|+|||||+++|.+...........|.+.....+.... -..+++|||||+....
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~- 85 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT- 85 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH-
Confidence 4799999999999999999987543211111122111110111000 0137999999986532
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------------
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE------------- 470 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e------------- 470 (518)
..+.+.+..||++++|+|+++....+++..+. .+.. .+.|+++|+||+|+.....
T Consensus 86 ------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-~~~~-----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 86 ------NLRKRGGALADIAILVVDINEGFQPQTIEAIN-ILKR-----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred ------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-HHHH-----cCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 22334567799999999998743334444332 2321 4689999999999852110
Q ss_pred -----------chHHHHHHHHhc---------------CCceEEEeccCCCCHHHHHHHHHHHH
Q 046233 471 -----------KWPSFKEKLQAR---------------GIEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 471 -----------~~eel~~~l~~~---------------g~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
.+.++...+... .++++++||++|+|+++|++.+...+
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000111222221 35789999999999999999887544
No 219
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=5.4e-15 Score=157.18 Aligned_cols=165 Identities=23% Similarity=0.281 Sum_probs=121.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc----hhhhccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG----HEFLRHT 416 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg----~~fLr~I 416 (518)
+.++|+|+||+|||||++.++.+.+.+.+|+|||....+|.+.+. ..+++++||||+.+...+.+... -..+.|+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk-YlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK-YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh-eeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999988877 36899999999987655443221 1234565
Q ss_pred cccCceEEEEeCCCC--CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH---HHHHHHHhc-CCceEEEe
Q 046233 417 ERCSALVHVIDGSAE--QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP---SFKEKLQAR-GIEPFCMS 490 (518)
Q Consensus 417 erADvlL~VVDaS~~--~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e---el~~~l~~~-g~~i~~IS 490 (518)
+ .+++|++|+|.. -+..+--.|...+ .+-..++|.|+|+||+|+......-+ ++.+.+... +++++.+|
T Consensus 248 r--aaVLYfmDLSe~CGySva~QvkLfhsI---KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 248 R--SAVLYFMDLSEMCGYSVAAQVKLYHSI---KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred h--hhheeeeechhhhCCCHHHHHHHHHHh---HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 4 568999999873 2322222233333 24457899999999999986654433 333334333 48999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhh
Q 046233 491 AVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~~~ 511 (518)
..+.+|+-++....++.+-..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccchhceeeHHHHHHHHHHHH
Confidence 999999999888777665443
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.56 E-value=4.6e-14 Score=139.12 Aligned_cols=151 Identities=22% Similarity=0.152 Sum_probs=96.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCC--------------Cceeeec---ee---------------------eEEE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANY--------------PFTTLLP---NL---------------------GVVS 383 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~y--------------pfTTl~p---~l---------------------g~v~ 383 (518)
+|+++|..++|||||+++|+......+.. ...|... .+ ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58899999999999999998643211000 0011100 00 1111
Q ss_pred ecCCceEEEEcCCCCccccccCCCcchhhhcccc--ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 384 FDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE--RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 384 ~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie--rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
.. +..+.++||||+.. +....++.+. .+|++++|+|+.......+...+ .++.. .++|+++|+|
T Consensus 81 ~~-~~~i~liDtpG~~~-------~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l-~~l~~-----~~ip~ivvvN 146 (224)
T cd04165 81 KS-SKLVTFIDLAGHER-------YLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHL-GLALA-----LNIPVFVVVT 146 (224)
T ss_pred eC-CcEEEEEECCCcHH-------HHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEE
Confidence 12 45799999999754 2233444443 68999999999876554444433 34432 4589999999
Q ss_pred CCCCCCccc---chHHHHHHHHh--------------------------cCCceEEEeccCCCCHHHHHHHHHH
Q 046233 462 KMDLPEAYE---KWPSFKEKLQA--------------------------RGIEPFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 462 KiDL~~~~e---~~eel~~~l~~--------------------------~g~~i~~ISAktgeGI~eL~~~L~e 506 (518)
|+|+..... ...++.+.+.. ...++|++||.+|+|+++|+..|..
T Consensus 147 K~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 147 KIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 999875432 22334344431 0238999999999999999988754
No 221
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.56 E-value=5e-14 Score=139.92 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=77.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCC------------C------CCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIA------------N------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia------------~------ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
+|+++|.+|+|||||+++|+.....+. + ....|+......+.+. +.++.+|||||+.+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~-~~~i~liDTPG~~~--- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE-DTKVNLIDTPGHMD--- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC-CEEEEEEeCCCccc---
Confidence 489999999999999999976422110 1 1122333344445554 57899999999865
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+...+.++++.+|++++|+|+++.... ....++..+.. .++|+++|+||+|+..
T Consensus 77 ----f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 ----FIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred ----hHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 333456677889999999999986543 33444454542 3689999999999874
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.56 E-value=2.6e-14 Score=151.69 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=106.4
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC----------------CCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+++|.+++|||||+++|++..... .....+|++...-.+.. ....+.++||||+.+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~- 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD- 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH-
Confidence 344589999999999999999998631100 11345566543322222 246899999999754
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchH----HHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWP----SFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~e----el~ 476 (518)
+...+++.+..+|++++|+|+.......+.+.+. .+.. .++| +|||+||+|+....+..+ ++.
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~-~~~~-----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~ 155 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQ-----VGVPYLVVFLNKVDLVDDEELLELVEMEVR 155 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH-HHHH-----cCCCEEEEEEEecCCcchHHHHHHHHHHHH
Confidence 3345566678899999999998754444444443 3332 3567 678999999975433322 344
Q ss_pred HHHHhcC-----CceEEEeccCCC--------CHHHHHHHHHHHHHh
Q 046233 477 EKLQARG-----IEPFCMSAVKRE--------GTHEVISAAYQLLQK 510 (518)
Q Consensus 477 ~~l~~~g-----~~i~~ISAktge--------GI~eL~~~L~e~L~~ 510 (518)
+.+...+ ++++++||+++. ++.+|++.|.+.++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 156 ELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 4444443 589999999983 678888888887753
No 223
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.8e-14 Score=153.24 Aligned_cols=174 Identities=21% Similarity=0.255 Sum_probs=118.8
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCcc-ccccCCCcc-hhhh
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLE-GAHQGFGLG-HEFL 413 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie-gas~~~gLg-~~fL 413 (518)
++.-++|+++|.||||||||+|+|++....| ++.|+||.+..-..+.++ +..+.|.||+|+.+ ....-..++ ..-.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~-G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN-GVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC-CeEEEEEeccccccccCChhHHHhHHHHH
Confidence 4556799999999999999999999987765 899999999988888876 78999999999987 111111222 1223
Q ss_pred ccccccCceEEEEeCCCCCCHHHHH--HHHHHHH----hcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhc---C
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFD--AVRLELE----MFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQAR---G 483 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~--~L~~eL~----~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~---g 483 (518)
+.+++||++++|+|+......++.. ....... .+.+.+...|+++|.||+|+....... .....+.... .
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSV 423 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcc
Confidence 4578999999999994322222222 1111111 122344568999999999998652211 1111112211 2
Q ss_pred Cce-EEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 484 IEP-FCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 484 ~~i-~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.++ .++|+++++|++.|...|.+.+...
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 334 4599999999999999998877643
No 224
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=7.8e-15 Score=136.15 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=115.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceee--eceeeEEEecC----------CceEEEEcCCCCccccccCCC
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTL--LPNLGVVSFDY----------DSTMVVADLPGLLEGAHQGFG 407 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl--~p~lg~v~~~~----------~~~l~I~DTPGliegas~~~g 407 (518)
+.+...+|.+|+||||++.+++..++... -.+|+ +.....+-+.. ...+++|||+|+.+..+
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~q--FIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS---- 82 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQ--FISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS---- 82 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccce--eEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH----
Confidence 34667899999999999999998765221 11222 11222222211 13689999999977544
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH-HHHHHHhcCCce
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS-FKEKLQARGIEP 486 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee-l~~~l~~~g~~i 486 (518)
|...|.+. |=..++++|+++..++-+...|...|+...- ..+.-+++++||+||.+...+.+. ......+.++|+
T Consensus 83 LTTAFfRD---AMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPY 158 (219)
T KOG0081|consen 83 LTTAFFRD---AMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPY 158 (219)
T ss_pred HHHHHHHh---hccceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCe
Confidence 55666654 7889999999999998888888888774321 134558999999999877655443 344445569999
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
|++||-+|.||++.++.|..++.+..
T Consensus 159 fETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred eeeccccCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999988888776543
No 225
>CHL00071 tufA elongation factor Tu
Probab=99.55 E-value=3.6e-14 Score=151.29 Aligned_cols=143 Identities=16% Similarity=0.150 Sum_probs=96.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC----------------CCCCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
..+|+++|.+|+|||||+++|++....+ ...+.+|++...-.+..+ +.++.++||||+.+
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~-~~~~~~iDtPGh~~--- 87 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE-NRHYAHVDCPGHAD--- 87 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-CeEEEEEECCChHH---
Confidence 4589999999999999999998752211 112566666544333333 46899999999643
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchH----HHHHH
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWP----SFKEK 478 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~e----el~~~ 478 (518)
+....++.+..+|++++|+|+......++.+.+. .+.. ..+| +|+|+||+|+....+..+ ++...
T Consensus 88 ----~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~-~~~~-----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 88 ----YVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL-LAKQ-----VGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred ----HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 4445566778899999999998754444444333 3332 3568 678999999986443322 44444
Q ss_pred HHhcC-----CceEEEeccCCCC
Q 046233 479 LQARG-----IEPFCMSAVKREG 496 (518)
Q Consensus 479 l~~~g-----~~i~~ISAktgeG 496 (518)
++..+ ++++++||.++.+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHhCCCCCcceEEEcchhhccc
Confidence 54432 6899999999864
No 226
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=1.1e-13 Score=132.41 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=110.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCC--CCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchh----hhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIAN--YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHE----FLRH 415 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~--ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~----fLr~ 415 (518)
+|+|||.+|||||||+|+|++.+..... .+..|.....+...+. +.++.++||||+.+.......+... +...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~-~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD-GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC-CeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 6899999999999999999988654433 3456777776666665 5799999999998653211112222 2223
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------hHHHHHHHHhcCCceEE
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------WPSFKEKLQARGIEPFC 488 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------~eel~~~l~~~g~~i~~ 488 (518)
...+|++|||+|+.. .+..+...+....+.+... .-+++++|+|++|....... ...++..++..+-.++.
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~-~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEK-VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChH-hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 466899999999987 4444444443333334422 23689999999997654211 13344445544444545
Q ss_pred Ee-----ccCCCCHHHHHHHHHHHHHh
Q 046233 489 MS-----AVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 489 IS-----AktgeGI~eL~~~L~e~L~~ 510 (518)
++ +..+.++.+|++.|.++++.
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 54 56688999999999999886
No 227
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.53 E-value=6.1e-15 Score=128.45 Aligned_cols=115 Identities=21% Similarity=0.196 Sum_probs=76.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC----CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT----IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~----Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
||+++|.+|||||||+++|++.... .......+.......+... ...+.+||++|....... ..+ .+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~-----~~~--~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGD-RQSLQFWDFGGQEEFYSQ-----HQF--FLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTE-EEEEEEEEESSSHCHHCT-----SHH--HHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCC-ceEEEEEecCccceeccc-----ccc--hhh
Confidence 6899999999999999999987654 1111222222121122111 235899999998553221 111 267
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
.+|++|+|+|++++.++..+..+..++........+.|++||+||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 79999999999998888887777667665543334699999999998
No 228
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.53 E-value=5.6e-15 Score=133.69 Aligned_cols=158 Identities=18% Similarity=0.136 Sum_probs=114.9
Q ss_pred eeCCCCCChhHHHHHHhccCCCCCCCCceee--eceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 345 IVGAPNAGKSTLLSVISAAQPTIANYPFTTL--LPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 345 LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl--~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
++|.+++|||+|+-++....+-...+ ..|. +..-..+..++ ..++++|||.|+.+..+ ..+.++ +.+|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~f-istvgid~rnkli~~~~~kvklqiwdtagqerfrs----vt~ayy---rda~a 73 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNF-ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS----VTHAYY---RDADA 73 (192)
T ss_pred ccccCccCceEEEEEeccCceecCce-eeeeeeccccceeccCCcEEEEEEeeccchHHHhh----hhHhhh---cccce
Confidence 78999999999998876543221111 1122 11222233332 35799999999977544 445554 45999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHHHH
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~eL 500 (518)
+++++|+.+..++++.+.|..++..|.. ....+++++||||+.....+. ++-....+..++|+.++||++|.|++-.
T Consensus 74 llllydiankasfdn~~~wlsei~ey~k--~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 74 LLLLYDIANKASFDNCQAWLSEIHEYAK--EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLA 151 (192)
T ss_pred eeeeeecccchhHHHHHHHHHHHHHHHH--hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHH
Confidence 9999999999999999999999998864 356788999999997644332 3334445566899999999999999999
Q ss_pred HHHHHHHHHhhh
Q 046233 501 ISAAYQLLQKNK 512 (518)
Q Consensus 501 ~~~L~e~L~~~~ 512 (518)
|-.|.+.+.+.+
T Consensus 152 f~~ia~~l~k~~ 163 (192)
T KOG0083|consen 152 FLAIAEELKKLK 163 (192)
T ss_pred HHHHHHHHHHhc
Confidence 999998877653
No 229
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=7.1e-14 Score=127.51 Aligned_cols=154 Identities=23% Similarity=0.254 Sum_probs=117.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|..+|..+|||||++..|+-.++.. ...|.-.++..+.+. ...|.+||+.|+.. +..-|.+++..+.
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtyk-N~kfNvwdvGGqd~-------iRplWrhYy~gtq 86 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYK-NVKFNVWDVGGQDK-------IRPLWRHYYTGTQ 86 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEee-eeEEeeeeccCchh-------hhHHHHhhccCCc
Confidence 378899999999999999999765422 123445566667776 57899999999865 4444556678899
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHh--cCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEM--FSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVK 493 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~--~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAkt 493 (518)
++|||+|+++.+..+. .+.||.. -++++...|++|.+||.|++.+.. .+++.+.++ .+.|-+.++||.+
T Consensus 87 glIFV~Dsa~~dr~ee---Ar~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 87 GLIFVVDSADRDRIEE---ARNELHRIINDREMRDAIILILANKQDLPDAMK-PQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred eEEEEEeccchhhHHH---HHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHHHHHHhccccccCCccEeecccccc
Confidence 9999999998765443 4455542 245677889999999999998754 456666554 3367899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQLLQ 509 (518)
Q Consensus 494 geGI~eL~~~L~e~L~ 509 (518)
+.|+.+-+.||.+.++
T Consensus 163 gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLK 178 (180)
T ss_pred chhHHHHHHHHHhhcc
Confidence 9999999999988764
No 230
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=9.4e-15 Score=137.36 Aligned_cols=164 Identities=24% Similarity=0.212 Sum_probs=122.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC-----CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhh
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI-----ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEF 412 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-----a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~f 412 (518)
|.-..|.|+|+.|||||||+.++....... ...-.+|...+.|.+.+. ...+.+||..|+.. +...|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-~~~l~fwdlgGQe~-------lrSlw 86 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-NAPLSFWDLGGQES-------LRSLW 86 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-cceeEEEEcCChHH-------HHHHH
Confidence 344568899999999999999986543211 122345666788888887 68999999999865 33446
Q ss_pred hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH------hcCCce
Q 046233 413 LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ------ARGIEP 486 (518)
Q Consensus 413 Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~------~~g~~i 486 (518)
-.++..|+++|||||+++++.++......+.+.. +..+.+.|+++.+||.|+.+..+. .++...+. ....++
T Consensus 87 ~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~~-~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076|consen 87 KKYYWLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAMEA-AELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhhH-HHHHHHhhhhhhcCCccCcc
Confidence 6677889999999999998777665544443322 334578999999999999876543 34443333 235689
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.+|||.+|+||++-+.|+...++.+
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.52 E-value=8.4e-14 Score=147.93 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=104.1
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccC-----CCC-----------CCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQ-----PTI-----------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak-----~~I-----------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+++|.+++|||||+++|++.. ... .....+|++.....+..+ +.++.|+||||+.+
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~-~~~i~~iDtPGh~~- 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA-NRHYAHVDCPGHAD- 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-CcEEEEEECCCHHH-
Confidence 344589999999999999999998621 110 113455665433333322 46899999999743
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcccchH----HHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYI-VAFNKMDLPEAYEKWP----SFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiI-VVlNKiDL~~~~e~~e----el~ 476 (518)
+...+.+.+..+|++++|+|+......+..+.+ ..+.. ..+|.+ +|+||+|+....+..+ ++.
T Consensus 88 ------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l-~~~~~-----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~ 155 (396)
T PRK12735 88 ------YVKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHH-HHHHH-----cCCCeEEEEEEecCCcchHHHHHHHHHHHH
Confidence 444566667889999999999875433333333 33332 357765 5799999975332222 344
Q ss_pred HHHHhc-----CCceEEEeccCCC----------CHHHHHHHHHHHHH
Q 046233 477 EKLQAR-----GIEPFCMSAVKRE----------GTHEVISAAYQLLQ 509 (518)
Q Consensus 477 ~~l~~~-----g~~i~~ISAktge----------GI~eL~~~L~e~L~ 509 (518)
..+... .++++++||+++. ++.+|++.|...++
T Consensus 156 ~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 444443 2689999999984 67888888887764
No 232
>PLN00023 GTP-binding protein; Provisional
Probab=99.51 E-value=1.7e-13 Score=141.67 Aligned_cols=121 Identities=18% Similarity=0.161 Sum_probs=84.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--------------CceEEEEcCCCCccccccCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--------------DSTMVVADLPGLLEGAHQGF 406 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--------------~~~l~I~DTPGliegas~~~ 406 (518)
.+|+|||..+||||||+++|+...+.....+..........+.++. ...+.||||+|+.....
T Consensus 22 iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs--- 98 (334)
T PLN00023 22 VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD--- 98 (334)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh---
Confidence 4899999999999999999998654322222221222233344431 24589999999865322
Q ss_pred CcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC----------CCCCCCEEEEEeCCCCCCc
Q 046233 407 GLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSP----------EIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 407 gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~----------~l~~kPiIVVlNKiDL~~~ 468 (518)
+... +++.++++|+|+|+++..++..+..|..++..... .....|+|||+||+||...
T Consensus 99 -L~~~---yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 99 -CRSL---FYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred -hhHH---hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 2233 35669999999999999998888888887775421 1135899999999999754
No 233
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=1.7e-13 Score=125.23 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=114.0
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeecee--eEEEec-CCceEEEEcCCCCccccccCCCcchhhhc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNL--GVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~l--g~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
..+.+-.+||.-|+|||+|+..++..++ .++-|- |+...+ .++.+. ...+++||||.|+.+... +.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkf-madcph-tigvefgtriievsgqkiklqiwdtagqerfra----vtrsy-- 80 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA----VTRSY-- 80 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHH-hhcCCc-ccceecceeEEEecCcEEEEEEeecccHHHHHH----HHHHH--
Confidence 3467788999999999999999998654 334432 222222 233333 235799999999876322 33333
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccC
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAkt 493 (518)
++.+...++|+|++.+.+...+..|....+.+ ...+..+++++||.||.....+ .++.+++.+..++.++++||++
T Consensus 81 -yrgaagalmvyditrrstynhlsswl~dar~l--tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~sakt 157 (215)
T KOG0097|consen 81 -YRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKT 157 (215)
T ss_pred -hccccceeEEEEehhhhhhhhHHHHHhhhhcc--CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccc
Confidence 45588999999999887766655544433321 1235668889999999876654 5667777777799999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 046233 494 REGTHEVISAAYQLLQKN 511 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~~ 511 (518)
|+|+++.|-...+.+-+.
T Consensus 158 g~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 158 GQNVEDAFLETAKKIYQN 175 (215)
T ss_pred cCcHHHHHHHHHHHHHHh
Confidence 999999887766665443
No 234
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.51 E-value=1.1e-13 Score=134.20 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=73.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCC----------C---------CceeeeceeeEEEec----CCceEEEEcCCCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIAN----------Y---------PFTTLLPNLGVVSFD----YDSTMVVADLPGL 398 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~----------y---------pfTTl~p~lg~v~~~----~~~~l~I~DTPGl 398 (518)
+|+++|.+++|||||+.+|+.....+.. + ...|+......+.+. ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 0 112222222222221 1357899999998
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.+. .......+..+|++|+|+|++......... +...+.. ..+|+++|+||+|+.
T Consensus 82 ~~f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~-~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-------MDEVAAALRLSDGVVLVVDVVEGVTSNTER-LIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred cch-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccC
Confidence 652 234556677899999999998866544322 2222221 358999999999986
No 235
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.51 E-value=7.3e-14 Score=148.21 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=94.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCC-----C-----C------CCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQP-----T-----I------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~-----~-----I------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+++|..++|||||+++|++... . . .....+|++...-.+.. ...++.||||||+.+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence 3445899999999999999999974310 0 0 11245666653322222 245799999999854
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcccch----HHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYI-VAFNKMDLPEAYEKW----PSFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiI-VVlNKiDL~~~~e~~----eel~ 476 (518)
+...+++.+..+|++++|+|+......++.+.+.. +.. ..+|.+ +|+||+|+....+.. +++.
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~-~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~ 155 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILL-ARQ-----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH-HHH-----cCCCEEEEEEEecccCCHHHHHHHHHHHHH
Confidence 33456667778999999999987544444443333 332 246755 689999997643322 2344
Q ss_pred HHHHhcC-----CceEEEeccCCC
Q 046233 477 EKLQARG-----IEPFCMSAVKRE 495 (518)
Q Consensus 477 ~~l~~~g-----~~i~~ISAktge 495 (518)
+.++..+ ++++++||+++.
T Consensus 156 ~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 156 ELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHhcCCCccCccEEECcccccc
Confidence 5555443 689999999875
No 236
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=4.2e-13 Score=127.45 Aligned_cols=155 Identities=19% Similarity=0.208 Sum_probs=119.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-------CCCCC---ceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-------IANYP---FTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG 409 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-------Ia~yp---fTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg 409 (518)
..+|+++|..+|||||++.+++...+- -..+. .||+..-+|.+.+.++..+.++|||||.+...
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f------ 83 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF------ 83 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH------
Confidence 358999999999999999999986531 11223 37888888999988778999999999977322
Q ss_pred hhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc--CCceE
Q 046233 410 HEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR--GIEPF 487 (518)
Q Consensus 410 ~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~--g~~i~ 487 (518)
.|--..+.+..+|+|+|.+.+... ....+...+... ...|++|++||.||..+.. .+.+++.+... ..+++
T Consensus 84 -m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~----~~ip~vVa~NK~DL~~a~p-pe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 84 -MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR----NPIPVVVAINKQDLFDALP-PEKIREALKLELLSVPVI 156 (187)
T ss_pred -HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc----cCCCEEEEeeccccCCCCC-HHHHHHHHHhccCCCcee
Confidence 232335669999999999998877 334455555532 2389999999999997754 46677777665 78999
Q ss_pred EEeccCCCCHHHHHHHHHHH
Q 046233 488 CMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~ 507 (518)
.++|..++++.+.++.+...
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999998888765
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.50 E-value=1.6e-13 Score=145.95 Aligned_cols=158 Identities=19% Similarity=0.186 Sum_probs=105.1
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCC----------------CCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPT----------------IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~----------------Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+++|.+++|||||+++|+..... ......+|++.....+... +.++.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-~~~i~~iDtPG~~~- 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE-KRHYAHVDCPGHAD- 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-CeEEEEEECCCHHH-
Confidence 34468999999999999999999863110 0113566766543333322 46899999999743
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCCCCcccch----HHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYI-VAFNKMDLPEAYEKW----PSFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiI-VVlNKiDL~~~~e~~----eel~ 476 (518)
+.......+..+|++++|+|+.......+.+.+ ..+.. ..+|++ +|+||+|+....+.. .++.
T Consensus 88 ------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~-~~~~~-----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~ 155 (396)
T PRK00049 88 ------YVKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFLNKCDMVDDEELLELVEMEVR 155 (396)
T ss_pred ------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHH-HHHHH-----cCCCEEEEEEeecCCcchHHHHHHHHHHHH
Confidence 334455667889999999999875444433333 33332 357876 589999997533322 2344
Q ss_pred HHHHhc-----CCceEEEeccCCC----------CHHHHHHHHHHHHH
Q 046233 477 EKLQAR-----GIEPFCMSAVKRE----------GTHEVISAAYQLLQ 509 (518)
Q Consensus 477 ~~l~~~-----g~~i~~ISAktge----------GI~eL~~~L~e~L~ 509 (518)
+.+... .++++++||+++. ++..|++.|.+.++
T Consensus 156 ~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 156 ELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 444432 3689999999875 56788888877654
No 238
>PLN03127 Elongation factor Tu; Provisional
Probab=99.50 E-value=1.9e-13 Score=147.44 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=103.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCC------C----------CCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQP------T----------IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~------~----------Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+++|.+++|||||+++|++... . ....+.+|++.....+..+ +.++.++||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~~iDtPGh~~- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA-KRHYAHVDCPGHAD- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC-CeEEEEEECCCccc-
Confidence 4455899999999999999999973210 0 1122566776544443333 46899999999843
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchH----HHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWP----SFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~e----el~ 476 (518)
+.......+..+|++++|+|+......++.+.+. .+.. .++| +|+|+||+|+....+..+ ++.
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~-~~~~-----~gip~iIvviNKiDlv~~~~~~~~i~~~i~ 204 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL-LARQ-----VGVPSLVVFLNKVDVVDDEELLELVEMELR 204 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH-HHHH-----cCCCeEEEEEEeeccCCHHHHHHHHHHHHH
Confidence 3344555567799999999998754444434333 3332 3578 578899999985433222 233
Q ss_pred HHHHhc-----CCceEEEecc---CCCC-------HHHHHHHHHHHHHh
Q 046233 477 EKLQAR-----GIEPFCMSAV---KREG-------THEVISAAYQLLQK 510 (518)
Q Consensus 477 ~~l~~~-----g~~i~~ISAk---tgeG-------I~eL~~~L~e~L~~ 510 (518)
+.+... .++++++||. ++.| +.+|+++|.+.++.
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~ 253 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPE 253 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCC
Confidence 333322 3578888876 4555 78888888887653
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.50 E-value=1.4e-13 Score=139.44 Aligned_cols=137 Identities=22% Similarity=0.188 Sum_probs=92.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC---C---C------------CCCCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP---T---I------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~---~---I------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
+|+++|.+|+|||||+++|+.... + + .....+|+......+.+. +.++.+|||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~-~~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK-DHRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC-CEEEEEEECCCcHH---
Confidence 489999999999999999963211 1 1 123456666666667766 57899999999865
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHHHHh
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEKLQA 481 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~l~~ 481 (518)
+...+.+.++.+|++|+|+|+.......+.. ++..+.. .++|+++++||+|+.... ...+++++.+..
T Consensus 77 ----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~~-----~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 77 ----FTIEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQADR-----YNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred ----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 3345666788899999999998765444333 3333432 468999999999997532 223444444443
Q ss_pred cC-CceEEEecc
Q 046233 482 RG-IEPFCMSAV 492 (518)
Q Consensus 482 ~g-~~i~~ISAk 492 (518)
.. ..++|+||.
T Consensus 147 ~~~~~~~Pisa~ 158 (270)
T cd01886 147 NPVPLQLPIGEE 158 (270)
T ss_pred CceEEEeccccC
Confidence 32 235777775
No 240
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.49 E-value=6.7e-13 Score=127.54 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=97.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCC-----ceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYP-----FTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~yp-----fTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
.+|+++|.+|||||||+|+|++......... -+|.. ...+.......+.+|||||+.+... ....+++.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~l~l~DtpG~~~~~~----~~~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMK--RTPYPHPKFPNVTLWDLPGIGSTAF----PPDDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccC--ceeeecCCCCCceEEeCCCCCcccC----CHHHHHHH
Confidence 3799999999999999999998543111111 11211 1112222234789999999865322 12233333
Q ss_pred --ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc------------cchHHHHHHHH-
Q 046233 416 --TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY------------EKWPSFKEKLQ- 480 (518)
Q Consensus 416 --IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~------------e~~eel~~~l~- 480 (518)
+..+|++++|.|.. ....+ ..+..++... .+|+++|+||+|+.... +.++.+++.+.
T Consensus 76 ~~~~~~d~~l~v~~~~--~~~~d-~~~~~~l~~~-----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 147 (197)
T cd04104 76 MKFSEYDFFIIISSTR--FSSND-VKLAKAIQCM-----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred hCccCcCEEEEEeCCC--CCHHH-HHHHHHHHHh-----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence 45688888885432 22222 2344455432 57999999999995321 11223333332
Q ss_pred ---hc---CCceEEEecc--CCCCHHHHHHHHHHHHHhhhH
Q 046233 481 ---AR---GIEPFCMSAV--KREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 481 ---~~---g~~i~~ISAk--tgeGI~eL~~~L~e~L~~~~~ 513 (518)
.. ..++|.+|+. .++++..|.+.|...|+..++
T Consensus 148 ~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 11 2478999998 689999999999999987655
No 241
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.49 E-value=3.6e-14 Score=144.58 Aligned_cols=162 Identities=23% Similarity=0.233 Sum_probs=123.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcch---hhhc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGH---EFLR 414 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~---~fLr 414 (518)
...+-|++||++||||||||++|+.+.....+..|.|++|+....+.+.+..+.+.||-|++...... |.. ..|.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~--LvaAF~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQ--LVAAFQATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHH--HHHHHHHHHH
Confidence 35677999999999999999999987766678899999999988888888899999999998643321 332 3466
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEecc
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAV 492 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAk 492 (518)
++..+|++|||+|+|+|+-..+.+.....|...+- ......++=|-||+|........+ . --.+.+||+
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E-------~--n~~v~isal 324 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE-------K--NLDVGISAL 324 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc-------c--CCccccccc
Confidence 78899999999999999988888877777765431 011123556778988765422111 1 126889999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 046233 493 KREGTHEVISAAYQLLQK 510 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~ 510 (518)
+|.|+++++..+-..+..
T Consensus 325 tgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVAS 342 (410)
T ss_pred cCccHHHHHHHHHHHhhh
Confidence 999999999998877654
No 242
>PRK09866 hypothetical protein; Provisional
Probab=99.49 E-value=4.2e-13 Score=147.88 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=76.2
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+++++||||+....+. .+...+.+.+..||+|+||+|+.......+.. +.+.|+... ...|+++|+||+|+...
T Consensus 231 QIIFVDTPGIhk~~~~--~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee-Ilk~Lkk~~---K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 231 QLTLLDTPGPNEAGQP--HLQKMLNQQLARASAVLAVLDYTQLKSISDEE-VREAILAVG---QSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CEEEEECCCCCCccch--HHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH-HHHHHHhcC---CCCCEEEEEEcccCCCc
Confidence 6889999999653221 24445556789999999999998754444433 445555322 13599999999999642
Q ss_pred cc-chHHHHHHH----Hhc---CCceEEEeccCCCCHHHHHHHHHH
Q 046233 469 YE-KWPSFKEKL----QAR---GIEPFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 469 ~e-~~eel~~~l----~~~---g~~i~~ISAktgeGI~eL~~~L~e 506 (518)
.+ ..+.+...+ ... ...+|+|||++|.|+++|++.|.+
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 21 223333332 222 236999999999999999999987
No 243
>PTZ00099 rab6; Provisional
Probab=99.48 E-value=2.3e-13 Score=129.05 Aligned_cols=116 Identities=14% Similarity=-0.058 Sum_probs=87.0
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
..+.||||||+..... +.. .+++.||++|+|+|++++.++.....|...+.... ....|++||+||+||..
T Consensus 29 v~l~iwDt~G~e~~~~----~~~---~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~--~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 29 VRLQLWDTAGQERFRS----LIP---SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEECCChHHhhh----ccH---HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 5789999999865332 222 34567999999999999888888777766654332 24689999999999975
Q ss_pred cccc-hHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 468 AYEK-WPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 468 ~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
.... .++........++.+++|||+++.||+++|++|.+.+.+..
T Consensus 100 ~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 100 LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 3322 23444445555778999999999999999999999987643
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.48 E-value=2e-13 Score=145.55 Aligned_cols=145 Identities=20% Similarity=0.193 Sum_probs=94.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCC---------------------------------CCCceeeeceeeEEEecCCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIA---------------------------------NYPFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia---------------------------------~ypfTTl~p~lg~v~~~~~~ 388 (518)
+|+++|.+++|||||+.+|+.....+. .....|++.....+.+. +.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-KR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC-Ce
Confidence 689999999999999999964322111 01233455555555544 56
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
++.|+||||+.+ +.......+..+|++|+|+|+......++.+.+. .+..+ ..++++||+||+|+...
T Consensus 81 ~~~liDtPGh~~-------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~----~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 81 KFIVADTPGHEQ-------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL----GIRHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEEeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc----CCCcEEEEEEecccccc
Confidence 899999999754 3334555678899999999998754333333222 22222 23568999999999753
Q ss_pred c-cchHHHHHH----HHhc---CCceEEEeccCCCCHHH
Q 046233 469 Y-EKWPSFKEK----LQAR---GIEPFCMSAVKREGTHE 499 (518)
Q Consensus 469 ~-e~~eel~~~----l~~~---g~~i~~ISAktgeGI~e 499 (518)
. +.++.+.+. +... .++++++||++|.|+++
T Consensus 149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2 222223332 3333 34799999999999986
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.48 E-value=1.5e-13 Score=154.13 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=96.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCC-----------C----------------------CceeeeceeeEEEe
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIAN-----------Y----------------------PFTTLLPNLGVVSF 384 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~-----------y----------------------pfTTl~p~lg~v~~ 384 (518)
+...+|+++|.+|+|||||+++|+.....+.. . ...|++.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 44558999999999999999999865432210 0 23344555555554
Q ss_pred cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 385 DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 385 ~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
. +.++.|+||||+.+ +...+...+..+|++|+|+|+......++.+.+. .+... ..+|+|||+||+|
T Consensus 102 ~-~~~~~liDtPG~~~-------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~----~~~~iivvvNK~D 168 (632)
T PRK05506 102 P-KRKFIVADTPGHEQ-------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL----GIRHVVLAVNKMD 168 (632)
T ss_pred C-CceEEEEECCChHH-------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh----CCCeEEEEEEecc
Confidence 4 56899999999754 3334455678899999999997653332222222 22222 2367899999999
Q ss_pred CCCc-ccchHHH----HHHHHhcC---CceEEEeccCCCCHHH
Q 046233 465 LPEA-YEKWPSF----KEKLQARG---IEPFCMSAVKREGTHE 499 (518)
Q Consensus 465 L~~~-~e~~eel----~~~l~~~g---~~i~~ISAktgeGI~e 499 (518)
+... .+.++.+ .+.+...+ .+++++||++|.|+.+
T Consensus 169 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 169 LVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9742 2222333 23333333 4699999999999984
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.48 E-value=2e-13 Score=148.32 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=97.7
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCC---------------------------------CCceeeeceeeEEEe
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIAN---------------------------------YPFTTLLPNLGVVSF 384 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~---------------------------------ypfTTl~p~lg~v~~ 384 (518)
+...+|+++|.+++|||||+.+|+.....+.. ....|++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45579999999999999999999754322211 112345554444444
Q ss_pred cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 385 DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 385 ~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
+ +.++.|+||||+.+ +.......+..+|++|+|+|+.......+.+.+. .+... ..+|+|||+||+|
T Consensus 105 ~-~~~i~~iDTPGh~~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~l----g~~~iIvvvNKiD 171 (474)
T PRK05124 105 E-KRKFIIADTPGHEQ-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLL----GIKHLVVAVNKMD 171 (474)
T ss_pred C-CcEEEEEECCCcHH-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHh----CCCceEEEEEeec
Confidence 4 56899999999643 3334555578899999999998653322222221 12221 2357899999999
Q ss_pred CCCcc-cchHHHHHHH----Hhc----CCceEEEeccCCCCHHHHH
Q 046233 465 LPEAY-EKWPSFKEKL----QAR----GIEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 465 L~~~~-e~~eel~~~l----~~~----g~~i~~ISAktgeGI~eL~ 501 (518)
+.... +.+..+.+.+ ... ..+++++||+++.|+.++.
T Consensus 172 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 172 LVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 97432 2233333333 222 3689999999999998753
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.3e-13 Score=138.29 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=118.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
-.+|.++|.+|||||||||+|.....+. +..+.+|-.++.-...++ ...++||||||+.++......+...+...+.+
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~ 117 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK 117 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence 3478899999999999999999654433 323333333333333444 57899999999998766655566677888889
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--------cchHHHHHHHHhc--------
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--------EKWPSFKEKLQAR-------- 482 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--------e~~eel~~~l~~~-------- 482 (518)
.|++++++|+.++....+...++..+.. ..++++++|+|.+|..... .....+++++...
T Consensus 118 ~DLvL~l~~~~draL~~d~~f~~dVi~~----~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 118 LDLVLWLIKADDRALGTDEDFLRDVIIL----GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred ccEEEEeccCCCccccCCHHHHHHHHHh----ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999998777677766665542 2348999999999987541 0111222222211
Q ss_pred --CCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 483 --GIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 483 --g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
-.+++..|+..++|+++|...|.+.++..
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 23788888899999999999999988754
No 248
>PLN03126 Elongation factor Tu; Provisional
Probab=99.46 E-value=6.1e-13 Score=144.60 Aligned_cols=145 Identities=17% Similarity=0.187 Sum_probs=96.8
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC----------------CCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+++|.+++|||||+++|+.....+ ......|++.....+... +.++.++||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~-~~~i~liDtPGh~~- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE-NRHYAHVDCPGHAD- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC-CcEEEEEECCCHHH-
Confidence 445689999999999999999998532111 122345555444344443 56899999999855
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchH----HHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWP----SFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~e----el~ 476 (518)
+....+..+..+|++++|+|+......+..+.+. .+.. ..+| +|||+||+|+....+..+ ++.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~-~~~~-----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~ 224 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL-LAKQ-----VGVPNMVVFLNKQDQVDDEELLELVELEVR 224 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH-HHHH-----cCCCeEEEEEecccccCHHHHHHHHHHHHH
Confidence 3345566677899999999998764444444333 3332 3567 778999999986433222 444
Q ss_pred HHHHhc-----CCceEEEeccCCCC
Q 046233 477 EKLQAR-----GIEPFCMSAVKREG 496 (518)
Q Consensus 477 ~~l~~~-----g~~i~~ISAktgeG 496 (518)
..+... .++++++||.++.+
T Consensus 225 ~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 225 ELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHhcCCCcCcceEEEEEcccccc
Confidence 555543 46899999998853
No 249
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.45 E-value=1.3e-12 Score=128.98 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=75.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCC----------------CCceeeeceeeEEEec---------CCceEEEEcCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIAN----------------YPFTTLLPNLGVVSFD---------YDSTMVVADLP 396 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~----------------ypfTTl~p~lg~v~~~---------~~~~l~I~DTP 396 (518)
.|+++|..++|||||+.+|+.....+.. ....|+......+.+. ....+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999754321110 1122333222222232 14578999999
Q ss_pred CCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 397 GLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 397 Gliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
|+.+ +.......++.||++|+|+|+......+....+..... .++|+++|+||+|+.
T Consensus 82 G~~~-------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~------~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD-------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK------ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc-------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECCCcc
Confidence 9876 33445667788999999999998766555444443332 357999999999986
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.45 E-value=3.2e-13 Score=135.67 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=78.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC------------CC------CCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI------------AN------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I------------a~------ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
+|+|+|.+|||||||+++|......+ .+ ....|+......+.+. +..+++|||||+.+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~-~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK-GHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC-CEEEEEEECcCHHH---
Confidence 48999999999999999997532211 01 1133445555566665 57899999999865
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+...+.+.+..+|++++|+|++..........| ..+.. .++|+++|+||+|+...
T Consensus 77 ----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~-----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 ----FVGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE-----AGIPRIIFINKMDRERA 131 (268)
T ss_pred ----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECCccCCC
Confidence 223455667789999999999986555443333 33332 36899999999999864
No 251
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.45 E-value=7.1e-13 Score=150.01 Aligned_cols=116 Identities=22% Similarity=0.166 Sum_probs=84.3
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC------CC------------CCceeeeceeeEEEecCCceEEEEcCCCCc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI------AN------------YPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------a~------------ypfTTl~p~lg~v~~~~~~~l~I~DTPGli 399 (518)
..+.+|+++|.+|+|||||+++|......+ .+ ...+|+......+.+. +.++.+|||||+.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~-~~~i~liDTPG~~ 86 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK-GHRINIIDTPGHV 86 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC-CeEEEEEECCCCc
Confidence 346799999999999999999997432111 11 2456777777777776 5799999999986
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+. .....+.++.+|++|+|+|+.+.....+...+ ..+.. .++|+++|+||+|+..
T Consensus 87 ~~-------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 87 DF-------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR-----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred ch-------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH-----cCCCEEEEEECCCCCC
Confidence 52 22455667789999999999886555444433 33332 3689999999999874
No 252
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.8e-12 Score=139.77 Aligned_cols=155 Identities=25% Similarity=0.213 Sum_probs=114.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
|=|+++|+...||||||-.|-+.+......-..|.+.--..+.++ ....++++||||+.-+ ...--|..+-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-------t~mRaRGa~v 78 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-------TAMRARGASV 78 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-------HHHHhcCCcc
Confidence 468999999999999999999876655555566665444445554 3468999999998542 2223445667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC---------CceEEE
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG---------IEPFCM 489 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g---------~~i~~I 489 (518)
||++++|+|+.+.-..++.+.+.. ++ ..+.|++|++||+|.+.. ....+...+...+ ..++++
T Consensus 79 tDIaILVVa~dDGv~pQTiEAI~h-ak-----~a~vP~iVAiNKiDk~~~--np~~v~~el~~~gl~~E~~gg~v~~Vpv 150 (509)
T COG0532 79 TDIAILVVAADDGVMPQTIEAINH-AK-----AAGVPIVVAINKIDKPEA--NPDKVKQELQEYGLVPEEWGGDVIFVPV 150 (509)
T ss_pred ccEEEEEEEccCCcchhHHHHHHH-HH-----HCCCCEEEEEecccCCCC--CHHHHHHHHHHcCCCHhhcCCceEEEEe
Confidence 999999999999666666655543 22 257999999999999854 3445555665543 478999
Q ss_pred eccCCCCHHHHHHHHHHHHHh
Q 046233 490 SAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~~ 510 (518)
||++|+|+++|+..|.-+.+.
T Consensus 151 SA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 151 SAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred eccCCCCHHHHHHHHHHHHHH
Confidence 999999999999988765544
No 253
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.43 E-value=1.1e-12 Score=144.28 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=79.3
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccCCCC----------------CCC------CceeeeceeeEEEecCCceEEE
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANY------PFTTLLPNLGVVSFDYDSTMVV 392 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~y------pfTTl~p~lg~v~~~~~~~l~I 392 (518)
.|...+.+|+|+|.++||||||+++|+.....+ .++ ...|+......+.+. +..+.+
T Consensus 5 ~~~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~-~~~inl 83 (526)
T PRK00741 5 QEVAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR-DCLINL 83 (526)
T ss_pred chhhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC-CEEEEE
Confidence 345567799999999999999999996421111 010 112233333334444 568999
Q ss_pred EcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 393 ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 393 ~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
|||||+.+ +.....+.+..+|++|+|+|+++..... ...++..+. ..++|+++++||+|+..
T Consensus 84 iDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-----~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 84 LDTPGHED-------FSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR-----LRDTPIFTFINKLDRDG 145 (526)
T ss_pred EECCCchh-------hHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH-----hcCCCEEEEEECCcccc
Confidence 99999865 2334566678899999999998754332 333333333 24689999999999864
No 254
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.3e-12 Score=140.57 Aligned_cols=161 Identities=21% Similarity=0.234 Sum_probs=121.8
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC---------------CCCCceeeeceeeEEEecC--CceEEEEcCCCCcc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI---------------ANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLE 400 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I---------------a~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGlie 400 (518)
..+.++++|-....|||||..+|+.....+ ....+.|+......+.+.+ ..-+.++||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 456789999999999999999987543221 2345667766666665543 25789999999987
Q ss_pred ccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHH
Q 046233 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEK 478 (518)
Q Consensus 401 gas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~ 478 (518)
++.+..|.+..|+.+|+|||++..-..++...++..++ .+..+|.|+||+|++.++ .....+.+.
T Consensus 138 -------Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~adpe~V~~q~~~l 204 (650)
T KOG0462|consen 138 -------FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPSADPERVENQLFEL 204 (650)
T ss_pred -------ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCCCCHHHHHHHHHHH
Confidence 45567788889999999999999776666666666665 467799999999998654 223334444
Q ss_pred HHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 479 LQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 479 l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+.....+++.+|||+|.|+++++++|.+.++-.
T Consensus 205 F~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 205 FDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred hcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 444456899999999999999999999988754
No 255
>PRK12739 elongation factor G; Reviewed
Probab=99.41 E-value=1.1e-12 Score=148.52 Aligned_cols=116 Identities=21% Similarity=0.172 Sum_probs=84.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCC---CC---C------------CCCceeeeceeeEEEecCCceEEEEcCCCCc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQP---TI---A------------NYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~---~I---a------------~ypfTTl~p~lg~v~~~~~~~l~I~DTPGli 399 (518)
..+.+|+++|.+|+|||||+++|+.... .+ . ....+|++.....+.++ +.++.++||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~-~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK-GHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC-CEEEEEEcCCCHH
Confidence 3467999999999999999999974311 11 1 14466777766667775 6799999999986
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+ +..+..+.+..+|++|+|+|+.......+...+ ..+.. .++|+|+++||+|+..
T Consensus 85 ~-------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~~-----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 D-------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQADK-----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred H-------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHHH-----cCCCEEEEEECCCCCC
Confidence 5 333567778889999999999886554444333 33332 3589999999999874
No 256
>PRK13351 elongation factor G; Reviewed
Probab=99.40 E-value=1.9e-12 Score=146.40 Aligned_cols=116 Identities=22% Similarity=0.204 Sum_probs=80.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC------------CC------CCceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI------------AN------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------------a~------ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
.+.+|+++|..++|||||+++|+.....+ .+ ....|+......+.+. ...+.+|||||+.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~-~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD-NHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC-CEEEEEEECCCcHH
Confidence 45799999999999999999998532211 11 1223444444455554 57899999999865
Q ss_pred ccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 401 gas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
. .....+.++.+|++|+|+|++..........| ..+.. .++|+++|+||+|+...
T Consensus 86 f-------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred H-------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-----cCCCEEEEEECCCCCCC
Confidence 2 23345566779999999999987665554443 33332 36899999999998753
No 257
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.40 E-value=4.3e-12 Score=128.32 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=75.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCC----------------CCC------ceeeeceeeEEEecCCceEEEEcCCC
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIA----------------NYP------FTTLLPNLGVVSFDYDSTMVVADLPG 397 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----------------~yp------fTTl~p~lg~v~~~~~~~l~I~DTPG 397 (518)
+..|+|+|.+|+|||||+++|+.....+. ++. ..|+......+.+. +..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~-~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYR-DCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeC-CEEEEEEECCC
Confidence 35799999999999999999975322111 111 11222233344444 57899999999
Q ss_pred CccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 398 LLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 398 liegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+.+. .....+.++.+|++|+|+|++...... ...++..+.. .++|+++++||+|+..+
T Consensus 81 ~~df-------~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~-----~~~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDF-------SEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL-----RGIPIITFINKLDREGR 138 (267)
T ss_pred chHH-------HHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh-----cCCCEEEEEECCccCCC
Confidence 8652 223455677899999999998754332 2333333331 46899999999998765
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.40 E-value=2e-12 Score=139.54 Aligned_cols=146 Identities=16% Similarity=0.114 Sum_probs=95.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEecCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~~~~ 388 (518)
..+|+++|..++|||||+.+|+.....+ ......|++.....+.++ +.
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~-~~ 85 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-KY 85 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC-Ce
Confidence 3489999999999999999997521110 012345666555444444 46
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCC-------HHHHHHHHHHHHhcCCCCCCCC-EEEEE
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQP-------EFEFDAVRLELEMFSPEIAEKP-YIVAF 460 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s-------~e~~~~L~~eL~~~~~~l~~kP-iIVVl 460 (518)
.+.|+||||+.+ +.......+..+|++|+|+|+..... .+..+.|. .+.. ..+| +|||+
T Consensus 86 ~i~lIDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~-----~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHRD-------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT-----LGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChHH-------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH-----cCCCeEEEEE
Confidence 899999999765 44456667788999999999987431 12233332 2332 3455 67899
Q ss_pred eCCCCCC---cccch----HHHHHHHHhc-----CCceEEEeccCCCCHHH
Q 046233 461 NKMDLPE---AYEKW----PSFKEKLQAR-----GIEPFCMSAVKREGTHE 499 (518)
Q Consensus 461 NKiDL~~---~~e~~----eel~~~l~~~-----g~~i~~ISAktgeGI~e 499 (518)
||||+.. ..+.+ +++.+.+... .++++++||.+|+|+.+
T Consensus 153 NKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 153 NKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999532 11223 3444444433 36799999999999964
No 259
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.40 E-value=1.1e-12 Score=141.93 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=102.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC---CCCCCceeeeceeeEE---------------EecC----------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT---IANYPFTTLLPNLGVV---------------SFDY---------------- 386 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~ypfTTl~p~lg~v---------------~~~~---------------- 386 (518)
..|+++|...+|||||+.+|++.... ..-....|++.-+... .+..
T Consensus 35 ~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (460)
T PTZ00327 35 INIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMT 114 (460)
T ss_pred EEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccccc
Confidence 47999999999999999999975331 0111122221100000 0000
Q ss_pred -CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 387 -DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 387 -~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
...+.++|+||+.. +...++..+..+|++++|+|+.... ..+..+.+ ..+... .-+|+|||+||+|
T Consensus 115 ~~~~i~~IDtPGH~~-------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~l----gi~~iIVvlNKiD 182 (460)
T PTZ00327 115 LKRHVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIM----KLKHIIILQNKID 182 (460)
T ss_pred ccceEeeeeCCCHHH-------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHc----CCCcEEEEEeccc
Confidence 13689999999744 4455666678899999999998742 22222332 222222 2357899999999
Q ss_pred CCCccc---chHHHHHHHHh---cCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 465 LPEAYE---KWPSFKEKLQA---RGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 465 L~~~~e---~~eel~~~l~~---~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+..... ..+++.+.+.. ...+++++||++|.|++.|++.|.+.++..
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 985322 22334444432 257899999999999999999999876643
No 260
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=5.4e-12 Score=135.77 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=118.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.-+-|-++|....||||||.+|-+........-+.|...--..+.++.+.+++|.||||+..+ ..+--|...-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-------~aMRaRGA~v 224 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-------SAMRARGANV 224 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHH-------HHHHhccCcc
Confidence 456799999999999999999998765545555666655555666777789999999997542 2334455677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc---------CCceEEE
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR---------GIEPFCM 489 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~---------g~~i~~I 489 (518)
+|++|+|+.+.+.-..++.+.+...- ..+.|+||++||||.+.+ ..+..++.|... ..+++++
T Consensus 225 tDIvVLVVAadDGVmpQT~EaIkhAk------~A~VpiVvAinKiDkp~a--~pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMPQTLEAIKHAK------SANVPIVVAINKIDKPGA--NPEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred ccEEEEEEEccCCccHhHHHHHHHHH------hcCCCEEEEEeccCCCCC--CHHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 99999999999876666666554322 267999999999998754 345555555544 3589999
Q ss_pred eccCCCCHHHHHHHHHHHHH
Q 046233 490 SAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~ 509 (518)
||++|.|++.|.+.+.-+..
T Consensus 297 SAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAE 316 (683)
T ss_pred ecccCCChHHHHHHHHHHHH
Confidence 99999999999998876654
No 261
>PRK00007 elongation factor G; Reviewed
Probab=99.39 E-value=2.4e-12 Score=145.92 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=84.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCC---CC---C------------CCCceeeeceeeEEEecCCceEEEEcCCCCc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQP---TI---A------------NYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~---~I---a------------~ypfTTl~p~lg~v~~~~~~~l~I~DTPGli 399 (518)
..+.+|+|+|.+|+|||||+++|+.... .+ . ....+|++.....+.+. +..+.++||||+.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~-~~~~~liDTPG~~ 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK-DHRINIIDTPGHV 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC-CeEEEEEeCCCcH
Confidence 3467999999999999999999963211 11 1 24567777766667766 5799999999986
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+ +..+..+.+..+|++|+|+|+...-..++...+.. +.. .++|+|+++||+|+..
T Consensus 87 ~-------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~-~~~-----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 D-------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ-ADK-----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred H-------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH-HHH-----cCCCEEEEEECCCCCC
Confidence 5 22345666788999999999987655555444433 332 3589999999999874
No 262
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.37 E-value=6.4e-12 Score=138.21 Aligned_cols=119 Identities=17% Similarity=0.223 Sum_probs=78.9
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccCCCC------C----------C------CCceeeeceeeEEEecCCceEE
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQPTI------A----------N------YPFTTLLPNLGVVSFDYDSTMV 391 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------a----------~------ypfTTl~p~lg~v~~~~~~~l~ 391 (518)
..|...+.+|++||.+++|||||+++|+.....+ . + ....|+......+.+. +..+.
T Consensus 5 ~~~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~-~~~in 83 (527)
T TIGR00503 5 LKEVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR-DCLVN 83 (527)
T ss_pred hhhhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC-CeEEE
Confidence 3456667899999999999999999986321111 0 0 0122232333334444 57899
Q ss_pred EEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 392 I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+|||||+.+ +.....+.+..+|++|+|+|++..... ....++..+.. .++|+++++||+|+.
T Consensus 84 liDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 84 LLDTPGHED-------FSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred EEECCChhh-------HHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 999999854 333456667789999999999875322 23334443332 468999999999985
No 263
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.2e-12 Score=119.92 Aligned_cols=157 Identities=23% Similarity=0.233 Sum_probs=108.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
++.++|..|+||||++-++.-.+. +...| |+..++..+.+. ..++++||+.|+-. +...|..+++.+|.
T Consensus 20 rililgldGaGkttIlyrlqvgev-vttkP--tigfnve~v~yK-NLk~~vwdLggqtS-------irPyWRcYy~dt~a 88 (182)
T KOG0072|consen 20 RILILGLDGAGKTTILYRLQVGEV-VTTKP--TIGFNVETVPYK-NLKFQVWDLGGQTS-------IRPYWRCYYADTDA 88 (182)
T ss_pred EEEEeeccCCCeeEEEEEcccCcc-cccCC--CCCcCccccccc-cccceeeEccCccc-------ccHHHHHHhcccce
Confidence 678999999999999988864332 11122 333344445554 57899999999754 44556667889999
Q ss_pred eEEEEeCCCCCCHHHHHH-HHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH---HH-HHHHHhcCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDA-VRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP---SF-KEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~-L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e---el-~~~l~~~g~~i~~ISAktgeG 496 (518)
+|||||.++.+....... +...|+ .+++....++|++||+|........+ .+ .+.++.+-+.++..||.+|+|
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~--E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~G 166 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQ--EEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEG 166 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhc--cHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccC
Confidence 999999999765443221 222222 34455677899999999875432211 11 233455568999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
+++.++||.+.+++.
T Consensus 167 ld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 167 LDPAMDWLQRPLKSR 181 (182)
T ss_pred CcHHHHHHHHHHhcc
Confidence 999999999988753
No 264
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.36 E-value=1.5e-12 Score=119.09 Aligned_cols=156 Identities=25% Similarity=0.210 Sum_probs=111.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|..|||||||+..|.+..+.- ...|--.+...+.++...++.+||+.|+.. +...|..+++..|.
T Consensus 19 rilllGldnAGKTT~LKqL~sED~~h---ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~-------IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 19 RILLLGLDNAGKTTFLKQLKSEDPRH---LTPTNGFNTKKVEYDGTFHLNVWDIGGQRG-------IRPYWSNYYENVDG 88 (185)
T ss_pred EEEEEecCCCcchhHHHHHccCChhh---ccccCCcceEEEeecCcEEEEEEecCCccc-------cchhhhhhhhccce
Confidence 78899999999999999999876631 112333444556666567899999999743 55567777889999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-----HhcCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-----QARGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-----~~~g~~i~~ISAktgeG 496 (518)
+|||+|.++...++.+..-.-+|.. ...+...|++|-.||.|+..+.. .+++...+ +.+.+++-.|||.+++|
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELle-eeKl~~vpvlIfankQdlltaa~-~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLE-EEKLAEVPVLIFANKQDLLTAAK-VEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhh-hhhhhccceeehhhhhHHHhhcc-hHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 9999998886665544332222211 23456899999999999986543 23333322 33367899999999999
Q ss_pred HHHHHHHHHHHHH
Q 046233 497 THEVISAAYQLLQ 509 (518)
Q Consensus 497 I~eL~~~L~e~L~ 509 (518)
+..-.+|+....+
T Consensus 167 ~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 167 STDGSDWVQSNPE 179 (185)
T ss_pred ccCcchhhhcCCC
Confidence 9999998876443
No 265
>PRK13768 GTPase; Provisional
Probab=99.35 E-value=3e-12 Score=128.38 Aligned_cols=119 Identities=24% Similarity=0.258 Sum_probs=81.2
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccc--cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTER--CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~Ier--ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.+.+|||||+.+.... ..++..+.+++.+ +++++||+|++......++..... +........++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~-l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLL-LALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHH-HHHHHHHHcCCCEEEEEEhHhhc
Confidence 6999999999875432 4466777777766 899999999987554444433221 11000001468999999999998
Q ss_pred CcccchHHHHH----------------------------HHHhcC--CceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 467 EAYEKWPSFKE----------------------------KLQARG--IEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 467 ~~~e~~eel~~----------------------------~l~~~g--~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
...+. +.+.+ .+...+ .+++++||+++.|+++|+++|.+.+..
T Consensus 176 ~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 176 SEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred CchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 65432 11111 122223 588999999999999999999988753
No 266
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=4.7e-12 Score=122.92 Aligned_cols=155 Identities=21% Similarity=0.229 Sum_probs=107.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhh---hcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEF---LRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~f---Lr~Ie 417 (518)
..|.|+|+.++|||+|+-.|..... ...+|++.|+.+...++ ....+++|.||+.+ +...+ ++|-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~---~~TvtSiepn~a~~r~g-s~~~~LVD~PGH~r-------lR~kl~e~~~~~~ 107 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH---RGTVTSIEPNEATYRLG-SENVTLVDLPGHSR-------LRRKLLEYLKHNY 107 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc---cCeeeeeccceeeEeec-CcceEEEeCCCcHH-------HHHHHHHHccccc
Confidence 4799999999999999999987632 22366788999998887 35689999999865 33333 34445
Q ss_pred ccCceEEEEeCCCC--CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh--------------
Q 046233 418 RCSALVHVIDGSAE--QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-------------- 481 (518)
Q Consensus 418 rADvlL~VVDaS~~--~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-------------- 481 (518)
++.++|||+|+... +.-...+.+...|..........|++|+.||.|+..+.. .+.+++.++.
T Consensus 108 ~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt-~~~Ir~~LEkEi~~lr~sRsa~~~ 186 (238)
T KOG0090|consen 108 SAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT-AEKIRQQLEKEIHKLRESRSALRS 186 (238)
T ss_pred cceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc-HHHHHHHHHHHHHHHHHHHhhhhc
Confidence 89999999999763 333334445555443222234678999999999985432 1122222210
Q ss_pred --------------------------cCCceEEEeccCCCCHHHHHHHHHHHH
Q 046233 482 --------------------------RGIEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 482 --------------------------~g~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
..+.|.++|++++ +++++.+||.+.+
T Consensus 187 ~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 187 ISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 1235788999998 8999999998753
No 267
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-11 Score=113.41 Aligned_cols=166 Identities=18% Similarity=0.172 Sum_probs=123.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCC-CCCceeeeceeeEEEecCC--ceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIA-NYPFTTLLPNLGVVSFDYD--STMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia-~ypfTTl~p~lg~v~~~~~--~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
...+|+++|.-++|||++|..|......+. .+.-|--+..++.+..+.+ ..+.|.||.|+-.+.. .|...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---eLprhy--- 81 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---ELPRHY--- 81 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh---hhhHhH---
Confidence 346899999999999999999986554332 2222333344555554433 4799999999866422 133333
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~ISAktg 494 (518)
+.-+|+.++|++..++++++..+.|..++..+. .....|++|++||+|+.+..+....+.+.+.+ ..+..++++|...
T Consensus 82 ~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 82 FQFADAFVLVYSPMDPESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDR 160 (198)
T ss_pred hccCceEEEEecCCCHHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccc
Confidence 455999999999999999999999999998754 34678999999999998766655455544443 3678999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
..+-+.|..+...+...
T Consensus 161 ~sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQP 177 (198)
T ss_pred hhhhhHHHHHHHhccCC
Confidence 99999999998877543
No 268
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.34 E-value=1.8e-12 Score=124.09 Aligned_cols=119 Identities=21% Similarity=0.274 Sum_probs=72.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEE-ecCCceEEEEcCCCCccccccCCCcchhhhcc---c
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVS-FDYDSTMVVADLPGLLEGAHQGFGLGHEFLRH---T 416 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~-~~~~~~l~I~DTPGliegas~~~gLg~~fLr~---I 416 (518)
..|.|+|++|||||+|+.+|....... -.|.+.++..... ......+.++|+||+.+ +...++.. +
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~---T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~r-------lr~~~~~~~~~~ 73 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP---TVTSMENNIAYNVNNSKGKKLRLVDIPGHPR-------LRSKLLDELKYL 73 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS------B---SSEEEECCGSSTCGTCECEEEETT-HC-------CCHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC---eeccccCCceEEeecCCCCEEEEEECCCcHH-------HHHHHHHhhhch
Confidence 468999999999999999999874311 1233444443211 12246899999999865 44455554 7
Q ss_pred cccCceEEEEeCCCC--CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc
Q 046233 417 ERCSALVHVIDGSAE--QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY 469 (518)
Q Consensus 417 erADvlL~VVDaS~~--~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~ 469 (518)
..+.+||||||++.. +..+..+.|...|..........|++|++||+|+..+.
T Consensus 74 ~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 74 SNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 889999999999752 11223344555444322223578999999999998654
No 269
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.34 E-value=7e-12 Score=135.43 Aligned_cols=147 Identities=20% Similarity=0.124 Sum_probs=94.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEecCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~~~~ 388 (518)
...|+++|..++|||||+.+|+.....+ ......|++.....+... ..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-~~ 85 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-KY 85 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-CE
Confidence 3579999999999999999986421100 011244555544444433 46
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCH------HHHHHHHHHHHhcCCCCCCC-CEEEEEe
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE------FEFDAVRLELEMFSPEIAEK-PYIVAFN 461 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~------e~~~~L~~eL~~~~~~l~~k-PiIVVlN 461 (518)
.++++||||+.+ +.......+..+|++|+|+|+...... .+.......+.. ... ++|||+|
T Consensus 86 ~i~liDtPGh~d-------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-----~gi~~iIV~vN 153 (447)
T PLN00043 86 YCTVIDAPGHRD-------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-----LGVKQMICCCN 153 (447)
T ss_pred EEEEEECCCHHH-------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-----cCCCcEEEEEE
Confidence 899999999866 334456667889999999999873210 122222222221 245 5788999
Q ss_pred CCCCCCc---c----cchHHHHHHHHhcC-----CceEEEeccCCCCHHH
Q 046233 462 KMDLPEA---Y----EKWPSFKEKLQARG-----IEPFCMSAVKREGTHE 499 (518)
Q Consensus 462 KiDL~~~---~----e~~eel~~~l~~~g-----~~i~~ISAktgeGI~e 499 (518)
|||+... . +..+++...++..+ ++++++||++|+||.+
T Consensus 154 KmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 154 KMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 9998621 1 12345555555544 6799999999999854
No 270
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=8.4e-12 Score=132.56 Aligned_cols=161 Identities=23% Similarity=0.267 Sum_probs=120.1
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCC---------------CCCCCceeeeceeeEEEecC----CceEEEEcCCC
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPT---------------IANYPFTTLLPNLGVVSFDY----DSTMVVADLPG 397 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~---------------Ia~ypfTTl~p~lg~v~~~~----~~~l~I~DTPG 397 (518)
++.+.++.+|-.-..|||||..+|...... +....+.|+..+.-.+.|.. ...+.++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 456778899999999999999998754321 23345667766555555532 25789999999
Q ss_pred CccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHH
Q 046233 398 LLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKE 477 (518)
Q Consensus 398 liegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~ 477 (518)
+.++ ..+..|.+..|..+|+|||++..-..+++......+. .+.-+|-|+||+||+.++ .+.+++
T Consensus 86 HVDF-------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle------~~LeIiPViNKIDLP~Ad--pervk~ 150 (603)
T COG0481 86 HVDF-------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPAAD--PERVKQ 150 (603)
T ss_pred ccce-------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH------cCcEEEEeeecccCCCCC--HHHHHH
Confidence 9884 4457788889999999999999766666666666665 456789999999999764 244444
Q ss_pred HHHhc-C---CceEEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 478 KLQAR-G---IEPFCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 478 ~l~~~-g---~~i~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
.++.. + ...+.+|||+|.||+++++.|.+.++..+
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 44433 3 36799999999999999999999887543
No 271
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.31 E-value=9e-12 Score=120.54 Aligned_cols=159 Identities=18% Similarity=0.137 Sum_probs=112.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC--ceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD--STMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~--~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+++|||...+|||+|+..++...+. ..|..|-.+.....+.++++ ..+.+|||.|+.+... +. -+ .+..
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~fp-~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr----lR--pl-sY~~ 76 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNAFP-EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR----LR--PL-SYPQ 76 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCcCc-ccccCeEEccceEEEEecCCCEEEEeeeecCCCccccc----cc--cc-CCCC
Confidence 37899999999999999999876442 33433444444445555322 4689999999977321 11 11 3567
Q ss_pred cCceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-------------HHHHHHHHhcC-
Q 046233 419 CSALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-------------PSFKEKLQARG- 483 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-------------eel~~~l~~~g- 483 (518)
+|++|+++++.++.++++. ..|.-+++.+. .+.|+|+|++|.||......+ ++.....+..+
T Consensus 77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga 153 (198)
T KOG0393|consen 77 TDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA 153 (198)
T ss_pred CCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc
Confidence 8999999999999998885 45666777765 479999999999998432111 11222222333
Q ss_pred CceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 484 IEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 484 ~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
..+++|||++..|++++|+......-.
T Consensus 154 ~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 154 VKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred ceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 589999999999999999987776543
No 272
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.30 E-value=1.3e-11 Score=122.64 Aligned_cols=164 Identities=20% Similarity=0.151 Sum_probs=101.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC-CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ-PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak-~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
||+|+|+.+|||||+.+.+.... |.-..+...|.++..-.+.......+.+||+||+....... +..+.-.-++.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--FNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT--HTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc--ccccHHHHHhccC
Confidence 68899999999999999998764 33344556677777666666656799999999997643221 1111111257799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------hHHHHHHHHhcC---CceEEEe
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------WPSFKEKLQARG---IEPFCMS 490 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------~eel~~~l~~~g---~~i~~IS 490 (518)
++|||+|+...+..+++..+...++.......+..+.|.+.|+|+...... .+.+.+.+...+ +.++.+|
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999999767777776666655432222246779999999999864322 223334444444 6788898
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 046233 491 AVKREGTHEVISAAYQLL 508 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L 508 (518)
.-.. .|-+.+..|.+.|
T Consensus 159 I~D~-Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 159 IWDE-SLYEAWSKIVQKL 175 (232)
T ss_dssp TTST-HHHHHHHHHHHTT
T ss_pred CcCc-HHHHHHHHHHHHH
Confidence 8774 5766666666544
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.29 E-value=1.9e-11 Score=137.92 Aligned_cols=108 Identities=21% Similarity=0.187 Sum_probs=74.7
Q ss_pred eCCCCCChhHHHHHHhccCCCC------------CC------CCceeeeceeeEEEecCCceEEEEcCCCCccccccCCC
Q 046233 346 VGAPNAGKSTLLSVISAAQPTI------------AN------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFG 407 (518)
Q Consensus 346 VG~pNAGKSTLLn~Ls~ak~~I------------a~------ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~g 407 (518)
||.+|+|||||+++|......+ .+ ....|+......+.+. +..+.+|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~-~~~i~liDtPG~~~------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK-GHKINLIDTPGHVD------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC-CEEEEEEECCCcHH-------
Confidence 6999999999999995432211 11 1334444445555555 57899999999865
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+...+.+.+..+|++|+|+|++..........| ..+.. .++|+++|+||+|+..
T Consensus 73 ~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~-----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 FTGEVERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK-----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH-----cCCCEEEEEECCCCCC
Confidence 223455667789999999999987665544433 33332 3689999999999874
No 274
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=1.4e-12 Score=123.39 Aligned_cols=165 Identities=15% Similarity=0.012 Sum_probs=114.7
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+++++|..++||||+|.++|..-+.-......-.+.....+.+. .+.++.+|||.|+.++.. +... ++
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDa----ItkA---yy 90 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDA----ITKA---YY 90 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHH----HHHH---Hh
Confidence 345688899999999999999999653322111111111111111111 135788999999987432 2233 45
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH-HHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP-SFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e-el~~~l~~~g~~i~~ISAktge 495 (518)
+.|.+.++|+.-++..+++....|.+.+.. ....+|.++|-||+||.+...... +...+.+.....++-+|++...
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~---e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~ 167 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQK---ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF 167 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHH---HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 568999999999999998888888777763 346799999999999987654432 2333334446789999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 046233 496 GTHEVISAAYQLLQKNK 512 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~ 512 (518)
|+..+|.+|.+.+.+..
T Consensus 168 NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQK 184 (246)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 99999999998776544
No 275
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.1e-11 Score=128.17 Aligned_cols=147 Identities=20% Similarity=0.199 Sum_probs=96.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-------------------------------CCCCCceeeeceeeEEEecCCce
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-------------------------------IANYPFTTLLPNLGVVSFDYDST 389 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-------------------------------Ia~ypfTTl~p~lg~v~~~~~~~ 389 (518)
.+++++|...+|||||+-+|+-..-. ...+.+.|++.....+..+ ...
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~-k~~ 86 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD-KYN 86 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC-Cce
Confidence 47899999999999999999643211 1123455555544444444 457
Q ss_pred EEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCH-------HHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 390 MVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE-------FEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 390 l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~-------e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
++|+|+||+.+ +..+++..+.+||+.|+|||++..+.. +..+.+. |.. .+.-..+||++||
T Consensus 87 ~tIiDaPGHrd-------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~--La~---tlGi~~lIVavNK 154 (428)
T COG5256 87 FTIIDAPGHRD-------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF--LAR---TLGIKQLIVAVNK 154 (428)
T ss_pred EEEeeCCchHH-------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH--HHH---hcCCceEEEEEEc
Confidence 99999999644 445566678899999999999986311 2222221 111 1234678999999
Q ss_pred CCCCCc-ccchHHHHHHHH----hc-----CCceEEEeccCCCCHHHH
Q 046233 463 MDLPEA-YEKWPSFKEKLQ----AR-----GIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 463 iDL~~~-~e~~eel~~~l~----~~-----g~~i~~ISAktgeGI~eL 500 (518)
||+++- ++.++++...+. .. .++|+||||.+|.|+.+.
T Consensus 155 MD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 155 MDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 999853 233444444333 22 357999999999998653
No 276
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=4.4e-12 Score=118.77 Aligned_cols=158 Identities=24% Similarity=0.266 Sum_probs=113.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
+...+++++|..|||||||++.|...+.. ....|++|+...+.+. +.+++.+|+.|+... .+-|-.++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~---qhvPTlHPTSE~l~Ig-~m~ftt~DLGGH~qA-------rr~wkdyf~ 86 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG---QHVPTLHPTSEELSIG-GMTFTTFDLGGHLQA-------RRVWKDYFP 86 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc---ccCCCcCCChHHheec-CceEEEEccccHHHH-------HHHHHHHHh
Confidence 45568999999999999999999886542 2245888888888887 689999999997541 123556677
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc---------------
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR--------------- 482 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~--------------- 482 (518)
.|+.+||+||+.+.+.+...+.-.+.+ .....+...|++|.+||+|.+.+.. .++++-.+...
T Consensus 87 ~v~~iv~lvda~d~er~~es~~eld~l-l~~e~la~vp~lilgnKId~p~a~s-e~~l~~~l~l~~~t~~~~~v~~~~~~ 164 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQERFAESKKELDAL-LSDESLATVPFLILGNKIDIPYAAS-EDELRFHLGLSNFTTGKGKVNLTDSN 164 (193)
T ss_pred hhceeEeeeehhhHHHhHHHHHHHHHH-HhHHHHhcCcceeecccccCCCccc-HHHHHHHHHHHHHhcccccccccCCC
Confidence 899999999999977655443322222 1223467899999999999987642 23333222210
Q ss_pred --CCceEEEeccCCCCHHHHHHHHHHHH
Q 046233 483 --GIEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 483 --g~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
.+.++.||...+.|.-+.|.|+.+++
T Consensus 165 ~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 165 VRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred CCeEEEEEEEEEccCccceeeeehhhhc
Confidence 23678899999999888888887654
No 277
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.23 E-value=1.1e-10 Score=118.65 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=84.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCC---------CCce-eeeceeeEEEecC-CceEEEEcCCCCccccccCCCc-
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIAN---------YPFT-TLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGL- 408 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~---------ypfT-Tl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gL- 408 (518)
.+|++||.+|+|||||+|+|++....... +..| ++......+..+. ..+++||||||+.+.......+
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 47899999999999999999987643321 1222 2333333333321 1479999999986543211000
Q ss_pred ------chhh---h-------c--cc--cccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 409 ------GHEF---L-------R--HT--ERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 409 ------g~~f---L-------r--~I--erADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
-.+| + + .+ .++|+++|+++.+... ...+++ +.++|. ...|+++|+||+|+..
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~-~lk~l~------~~v~vi~VinK~D~l~ 157 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE-FMKRLS------KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHH-HHHHHh------ccCCEEEEEECCCcCC
Confidence 0000 0 1 11 2588999999987532 222333 233343 2589999999999976
Q ss_pred ccc---chHHHHHHHHhcCCceEEEec
Q 046233 468 AYE---KWPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 468 ~~e---~~eel~~~l~~~g~~i~~ISA 491 (518)
..+ ....+.+.+...++++|....
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 432 233455556666777776544
No 278
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.21 E-value=1.2e-10 Score=114.68 Aligned_cols=132 Identities=18% Similarity=0.288 Sum_probs=83.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC--CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT--IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~--Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.|+++|.+|+|||||+++|...... +.....+ +.++. ....++.++||||.. ...+..++.+
T Consensus 41 ~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~-~~~~~i~~vDtPg~~----------~~~l~~ak~a 104 (225)
T cd01882 41 VVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVT-GKKRRLTFIECPNDI----------NAMIDIAKVA 104 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEe-cCCceEEEEeCCchH----------HHHHHHHHhc
Confidence 5899999999999999999864211 1111111 11122 235789999999853 2345557789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCE-EEEEeCCCCCCcccchHH----HHHHHHh---cCCceEEEec
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPY-IVAFNKMDLPEAYEKWPS----FKEKLQA---RGIEPFCMSA 491 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPi-IVVlNKiDL~~~~e~~ee----l~~~l~~---~g~~i~~ISA 491 (518)
|++++|+|++......+.. +...+.. ...|. ++|+||+|+.......+. +++.+.. .+.+++++||
T Consensus 105 DvVllviDa~~~~~~~~~~-i~~~l~~-----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa 178 (225)
T cd01882 105 DLVLLLIDASFGFEMETFE-FLNILQV-----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSG 178 (225)
T ss_pred CEEEEEEecCcCCCHHHHH-HHHHHHH-----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEee
Confidence 9999999998755444433 3444432 24675 459999999754332222 3222221 1468999999
Q ss_pred cCCC
Q 046233 492 VKRE 495 (518)
Q Consensus 492 ktge 495 (518)
++.-
T Consensus 179 ~~~~ 182 (225)
T cd01882 179 IVHG 182 (225)
T ss_pred ccCC
Confidence 9873
No 279
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.19 E-value=1.1e-10 Score=117.14 Aligned_cols=130 Identities=17% Similarity=0.185 Sum_probs=81.7
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC---CCcchhh
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG---FGLGHEF 412 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~---~gLg~~f 412 (518)
+..-.+|+|+|.+|||||||+|+|++... .+..+..+|..........+ +..+.+|||||+.+..... .......
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~-g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD-GFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-CeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 33456899999999999999999998764 34556666766665555544 5789999999998753211 1111112
Q ss_pred hcccc--ccCceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 413 LRHTE--RCSALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 413 Lr~Ie--rADvlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
.++++ ..++++||..+... ....+...+...-..+... .-.+++||+||+|....
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-IWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh-hHhCEEEEEeCCccCCC
Confidence 22222 46888888766543 2333333333322234322 23679999999998743
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.18 E-value=2.1e-10 Score=115.28 Aligned_cols=120 Identities=23% Similarity=0.340 Sum_probs=74.0
Q ss_pred eEEEEcCCCCccccccC--CCcchhhhccccccCceEEEEeCCCCCCHHHH--HHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 389 TMVVADLPGLLEGAHQG--FGLGHEFLRHTERCSALVHVIDGSAEQPEFEF--DAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 389 ~l~I~DTPGliegas~~--~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~--~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
.+.|+||||+|+-.... -.+....|.. ..--+++||+|.....+...+ ..|...--+|. ...|+|+|+||+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 58999999999832211 1122222221 124678999998654332222 22222222333 4689999999999
Q ss_pred CCCcccc------hHHHHHHHHh---------------------cCCceEEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 465 LPEAYEK------WPSFKEKLQA---------------------RGIEPFCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 465 L~~~~e~------~eel~~~l~~---------------------~g~~i~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
+....-. .+.+++.++. .++..+-|||.+|.|++++|..+.+.+.+..
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~ 267 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE 267 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence 9865321 1223333331 1467899999999999999999988877653
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.15 E-value=4.3e-10 Score=131.35 Aligned_cols=146 Identities=21% Similarity=0.174 Sum_probs=91.3
Q ss_pred CChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-----------------ceEEEEcCCCCccccccCCCcchhhh
Q 046233 351 AGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-----------------STMVVADLPGLLEGAHQGFGLGHEFL 413 (518)
Q Consensus 351 AGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-----------------~~l~I~DTPGliegas~~~gLg~~fL 413 (518)
++|||||.+|.+....-...-+.|.+.-...+.++.. ..+.||||||+..... ...
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~-------lr~ 544 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS-------LRK 544 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH-------HHH
Confidence 3499999999987664444444555433333333210 1389999999755321 122
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-----------------chHHHH
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-----------------KWPSFK 476 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-----------------~~eel~ 476 (518)
+.+..+|++++|+|+++....++...+. .+.. .++|+++|+||+|+..... ...++.
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~-~lk~-----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~ 618 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAIN-ILRQ-----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE 618 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHH-HHHH-----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence 3456699999999998754444444433 3332 3589999999999963211 011111
Q ss_pred -------HHHHhc---------------CCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 477 -------EKLQAR---------------GIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 477 -------~~l~~~---------------g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
..+... .+++++|||++|+||++|+.+|..+.+
T Consensus 619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 111211 358999999999999999998875544
No 282
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.13 E-value=4.1e-10 Score=109.86 Aligned_cols=167 Identities=21% Similarity=0.189 Sum_probs=104.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCC--CCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhc----c
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIAN--YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLR----H 415 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~--ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr----~ 415 (518)
+|+|+|.+||||||++|.|++....... ....|.........+. +..+.|+||||+.+.......+...+.+ .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~-g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD-GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET-TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeec-ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 6899999999999999999987653322 2233444555555555 6899999999996643322222222222 2
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch--------HHHHHHHHhcCCceE
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW--------PSFKEKLQARGIEPF 487 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~--------eel~~~l~~~g~~i~ 487 (518)
....+++|||+.+. +-+..+...+......+.+.. -+.+|||++..|........ ..+.+.++..+-.++
T Consensus 81 ~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~-~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEI-WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGG-GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHH-HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 34579999999998 456566666665556666543 35789999999877654311 123444554566777
Q ss_pred EEecc------CCCCHHHHHHHHHHHHHhh
Q 046233 488 CMSAV------KREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 488 ~ISAk------tgeGI~eL~~~L~e~L~~~ 511 (518)
.++.+ ....+.+|+..|.+++...
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 77665 3356788888888887765
No 283
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.12 E-value=2.3e-10 Score=118.29 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=99.0
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC---------------------------------CCCCceeeeceeeEEEe
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI---------------------------------ANYPFTTLLPNLGVVSF 384 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I---------------------------------a~ypfTTl~p~lg~v~~ 384 (518)
|.+.+++.+|...-||||||-+|+.....+ ....+.|++..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345688899999999999999997542211 01245566666555554
Q ss_pred cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 385 DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 385 ~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
. .++|+|+||||+.. +.+++......||++|++||+...-..+..+.. ....+ +.-+.+++++||||
T Consensus 84 ~-KRkFIiADTPGHeQ-------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-~I~sL----LGIrhvvvAVNKmD 150 (431)
T COG2895 84 E-KRKFIIADTPGHEQ-------YTRNMATGASTADLAILLVDARKGVLEQTRRHS-FIASL----LGIRHVVVAVNKMD 150 (431)
T ss_pred c-cceEEEecCCcHHH-------HhhhhhcccccccEEEEEEecchhhHHHhHHHH-HHHHH----hCCcEEEEEEeeec
Confidence 4 57999999999855 444555557789999999999765433333221 11111 23467899999999
Q ss_pred CCCcc-cchHHHHHHH----Hhc---CCceEEEeccCCCCHHH
Q 046233 465 LPEAY-EKWPSFKEKL----QAR---GIEPFCMSAVKREGTHE 499 (518)
Q Consensus 465 L~~~~-e~~eel~~~l----~~~---g~~i~~ISAktgeGI~e 499 (518)
|.+-. +..+.+...+ ++. ...++|+||+.|.|+-.
T Consensus 151 Lvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 151 LVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 99643 3334443333 333 34899999999998853
No 284
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.12 E-value=6e-11 Score=118.27 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=60.9
Q ss_pred eEEEEcCCCCccccccCCCcchhhhcccc--ccCceEEEEeCCCCCCHHHH-HHHHHHHH-hcCCCCCCCCEEEEEeCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTE--RCSALVHVIDGSAEQPEFEF-DAVRLELE-MFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~Ie--rADvlL~VVDaS~~~s~e~~-~~L~~eL~-~~~~~l~~kPiIVVlNKiD 464 (518)
.+.|+|||||++.... ...+..+++++. ..-++||++|+........+ ..+...+. .+. .+.|+|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~---~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLR---LELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHH---HTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhh---CCCCEEEeeeccC
Confidence 6899999999984221 112333444444 24578999999865443333 22222111 111 3689999999999
Q ss_pred CCCcc--cch---------------------HHHHHHHHhcC-C-ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 465 LPEAY--EKW---------------------PSFKEKLQARG-I-EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 465 L~~~~--e~~---------------------eel~~~l~~~g-~-~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
+.... ..+ ..+.+.+...+ . .++++|+.+++|+.+|+..|.+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98722 000 01111111112 3 799999999999999999998765
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.11 E-value=5.3e-10 Score=116.54 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=67.1
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
..+.|+||+|...... .....||++++|++....+ ++..+.... ....-++|+||+|+..
T Consensus 149 ~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd---~iq~~k~gi-------~E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 149 YDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGD---ELQGIKKGI-------MELADLIVINKADGDN 208 (332)
T ss_pred CCEEEEECCCCccchh----------HHHHhCCEEEEEecCCchH---HHHHHHhhh-------hhhhheEEeehhcccc
Confidence 4789999999864221 1245599999997743333 333322211 1233489999999875
Q ss_pred ccc---chHHHHHHHHhc-------CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 468 AYE---KWPSFKEKLQAR-------GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 468 ~~e---~~eel~~~l~~~-------g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
... ...++...+... ..+++.+||+++.||++|++.|.+.++.
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 432 223344444321 2489999999999999999999998654
No 286
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1e-10 Score=119.62 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=110.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC---------C---CCCCceeeec--ee---------eEEEe-----cCCceEEE
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT---------I---ANYPFTTLLP--NL---------GVVSF-----DYDSTMVV 392 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~---------I---a~ypfTTl~p--~l---------g~v~~-----~~~~~l~I 392 (518)
.+|++||....|||||..+|++-... + -.|.-+++.. .. ..... ..-+++.|
T Consensus 11 vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSf 90 (415)
T COG5257 11 VNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSF 90 (415)
T ss_pred eEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEE
Confidence 48999999999999999999875321 0 0111111100 00 00000 00147899
Q ss_pred EcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc---
Q 046233 393 ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--- 469 (518)
Q Consensus 393 ~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--- 469 (518)
+|.||+.- |...+|....-.|.+|+|+.++.+.+..+-..-...|... .-+.+|||-||+||...+
T Consensus 91 VDaPGHe~-------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi----gik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 91 VDAPGHET-------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII----GIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred eeCCchHH-------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh----ccceEEEEecccceecHHHHH
Confidence 99999754 4455677666789999999999865554443333334432 347799999999999754
Q ss_pred cchHHHHHHHHhc---CCceEEEeccCCCCHHHHHHHHHHHHHhhhHh
Q 046233 470 EKWPSFKEKLQAR---GIEPFCMSAVKREGTHEVISAAYQLLQKNKEA 514 (518)
Q Consensus 470 e~~eel~~~l~~~---g~~i~~ISAktgeGI~eL~~~L~e~L~~~~~~ 514 (518)
+.+++++++++.. +.+++|+||..+.||+-|++.|.+.++...++
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 4455666666543 67999999999999999999999998865443
No 287
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.10 E-value=7.3e-10 Score=117.79 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=115.0
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC----------------CCCCceeeeceeeEEEecCCceEEEEcCCCCcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA 402 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega 402 (518)
.+.+|++|-....|||||+..|+.+.-.. ....+.|+-..-.-+.|. +.++.|+||||+-+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~-~~~INIvDTPGHAD-- 80 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN-GTRINIVDTPGHAD-- 80 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC-CeEEEEecCCCcCC--
Confidence 35689999999999999999998753211 112344543333345555 57999999999855
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHHHH
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEKLQ 480 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~l~ 480 (518)
++-+.-|-+...|.+|+++|+......+.--.+.+.|+ ...+-|||+||+|.+.+. +.+++..+++.
T Consensus 81 -----FGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~------~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~ 149 (603)
T COG1217 81 -----FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA------LGLKPIVVINKIDRPDARPDEVVDEVFDLFV 149 (603)
T ss_pred -----ccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH------cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 66667777888999999999998654444445666666 355668889999998654 33444444443
Q ss_pred h-------cCCceEEEeccCC----------CCHHHHHHHHHHHHHhhh
Q 046233 481 A-------RGIEPFCMSAVKR----------EGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 481 ~-------~g~~i~~ISAktg----------eGI~eL~~~L~e~L~~~~ 512 (518)
. ..++++..||+.| .++.-||+.|.+.++...
T Consensus 150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 3 3679999999876 578899999999887643
No 288
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.09 E-value=2e-09 Score=114.25 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=94.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc----CCC------------CCCCCc---eeeecee---eEEEecCC----ceEEEEcC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA----QPT------------IANYPF---TTLLPNL---GVVSFDYD----STMVVADL 395 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a----k~~------------Ia~ypf---TTl~p~l---g~v~~~~~----~~l~I~DT 395 (518)
.|+++|+.|+|||||||+|++. ... .++.++ ||.+|.. .-+.+... .++.++||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 6999999999999999999987 222 245666 8888876 44444333 68999999
Q ss_pred CCCccccccCCCcchh----------------------hhcccc-ccCceEEEE-eCCC-----CCCHHHHHHHHHHHHh
Q 046233 396 PGLLEGAHQGFGLGHE----------------------FLRHTE-RCSALVHVI-DGSA-----EQPEFEFDAVRLELEM 446 (518)
Q Consensus 396 PGliegas~~~gLg~~----------------------fLr~Ie-rADvlL~VV-DaS~-----~~s~e~~~~L~~eL~~ 446 (518)
+|+......+.--... ..+.+. .+++.|+|. |.+- .+....-..+..+|+.
T Consensus 99 vG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~ 178 (492)
T TIGR02836 99 VGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE 178 (492)
T ss_pred CCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh
Confidence 9997533322111111 222344 699999999 7751 1233334556667763
Q ss_pred cCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-HhcCCceEEEeccC
Q 046233 447 FSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-QARGIEPFCMSAVK 493 (518)
Q Consensus 447 ~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-~~~g~~i~~ISAkt 493 (518)
.++|+++|+||+|-.... ...+.+.+ ...+.+++++|+..
T Consensus 179 -----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 179 -----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred -----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence 479999999999943221 23333333 33467888888854
No 289
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.7e-10 Score=108.86 Aligned_cols=160 Identities=12% Similarity=0.018 Sum_probs=109.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+++++|..+.||||++++.....+.-...+.+.+..+.-....+. ..+|..|||.|+....- +.+- ++-
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg----lrdg---yyI 81 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG----LRDG---YYI 81 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc----cccc---cEE
Confidence 456889999999999999999887665332222111211111111111 25789999999865211 2111 223
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.+.+.++++|+....+......|...+.... .++|+++++||.|...... ...-.......++.++++||+++.|+
T Consensus 82 ~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~r~~-k~k~v~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 82 QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKARKV-KAKPVSFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred ecceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceecccccc-ccccceeeecccceeEEeeccccccc
Confidence 4688999999999888777777777666443 4699999999999875431 12222334445789999999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 498 HEVISAAYQLLQ 509 (518)
Q Consensus 498 ~eL~~~L~e~L~ 509 (518)
+.-|.|+.+.+.
T Consensus 158 ekPFl~LarKl~ 169 (216)
T KOG0096|consen 158 ERPFLWLARKLT 169 (216)
T ss_pred ccchHHHhhhhc
Confidence 999999998764
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.08 E-value=4.8e-10 Score=100.99 Aligned_cols=141 Identities=23% Similarity=0.267 Sum_probs=97.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.++++||..++|||||+++|.+... +.....-+.+.+ =-.+||||..-. ++.+-+..+-....+|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~---------lykKTQAve~~d---~~~IDTPGEy~~---~~~~Y~aL~tt~~dad 66 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT---------LYKKTQAVEFND---KGDIDTPGEYFE---HPRWYHALITTLQDAD 66 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh---------hhcccceeeccC---ccccCCchhhhh---hhHHHHHHHHHhhccc
Confidence 4789999999999999999998642 211222344432 136899996431 1113333444567899
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCHHH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGTHE 499 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI~e 499 (518)
++++|-.+.++.+.-.- .+ .....+|+|-|++|+||.+. ..+...+.+|...|. ++|.+|+....|+++
T Consensus 67 vi~~v~~and~~s~f~p--------~f-~~~~~k~vIgvVTK~DLaed-~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 67 VIIYVHAANDPESRFPP--------GF-LDIGVKKVIGVVTKADLAED-ADISLVKRWLREAGAEPIFETSAVDNQGVEE 136 (148)
T ss_pred eeeeeecccCccccCCc--------cc-ccccccceEEEEecccccch-HhHHHHHHHHHHcCCcceEEEeccCcccHHH
Confidence 99999999886432110 00 12346789999999999864 345667777776654 899999999999999
Q ss_pred HHHHHHH
Q 046233 500 VISAAYQ 506 (518)
Q Consensus 500 L~~~L~e 506 (518)
|++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9998864
No 291
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.08 E-value=6.9e-10 Score=113.94 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=65.0
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+..+.|+||+|... .....+..+|.+++|.+.. ...++..+... +..+|.++|+||+|+.
T Consensus 126 g~D~viidT~G~~~----------~e~~i~~~aD~i~vv~~~~---~~~el~~~~~~-------l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQ----------SEVDIANMADTFVVVTIPG---TGDDLQGIKAG-------LMEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCch----------hhhHHHHhhceEEEEecCC---ccHHHHHHHHH-------HhhhccEEEEEccccc
Confidence 35789999999632 1222355578888885443 22333333322 2468889999999998
Q ss_pred Ccccch---HHHH---HHH-Hh-cC--CceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 467 EAYEKW---PSFK---EKL-QA-RG--IEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 467 ~~~e~~---eel~---~~l-~~-~g--~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
...... ..+. ..+ .. .+ .++++|||+++.|+++|+++|.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 653211 0110 111 11 12 36899999999999999999998755
No 292
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.06 E-value=4.9e-10 Score=103.47 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=46.2
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKM 463 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKi 463 (518)
.+.|+||||+.........+ +.+++..+|++|||+++.......+...+...+.. ....+++|+||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~---~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~-----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEI---TEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP-----DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHH---HHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT-----TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHH---HHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC-----CCCeEEEEEcCC
Confidence 59999999997644443333 34445679999999999986665666666555542 234499999995
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.05 E-value=1.2e-09 Score=124.69 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=78.1
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCCC----------CC------CceeeeceeeEEEe--c-CCceEEEEcCCC
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTIA----------NY------PFTTLLPNLGVVSF--D-YDSTMVVADLPG 397 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----------~y------pfTTl~p~lg~v~~--~-~~~~l~I~DTPG 397 (518)
...+.+|+++|..++|||||+.+|+.....+. ++ ...|+......+.+ . .+..+.|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34677899999999999999999975432211 10 12333333333332 2 245789999999
Q ss_pred CccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 398 LLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 398 liegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+.+ +.....+.+..+|++|+|+|+...-...+...|...++ ...|.|+++||+|+..
T Consensus 97 ~~d-------f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~------~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 97 HVD-------FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR------ERVKPVLFINKVDRLI 153 (731)
T ss_pred ccC-------hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH------cCCCeEEEEECchhhc
Confidence 866 33445666788999999999987544444444433232 2468899999999863
No 294
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.05 E-value=3.7e-10 Score=122.62 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=105.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC--CC-CCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT--IA-NYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~--Ia-~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
.+|+|||..|+||||||.+|...... +. ..+-+|+.+.+ .+.....+|+||+--.+. .......++
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadv----tPe~vpt~ivD~ss~~~~-------~~~l~~Eir 78 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADV----TPENVPTSIVDTSSDSDD-------RLCLRKEIR 78 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCcc----CcCcCceEEEecccccch-------hHHHHHHHh
Confidence 38999999999999999999987542 11 12222332111 122346899999843221 112344588
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCC---CCCCEEEEEeCCCCCCcccc-----hHHHHHHHHhcCCceEEE
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEI---AEKPYIVAFNKMDLPEAYEK-----WPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l---~~kPiIVVlNKiDL~~~~e~-----~eel~~~l~~~g~~i~~I 489 (518)
+|+++++|++++++.+.+.+.. .||-++.... .+.|+|+|+||+|+...... ...++..+.+.. .+|+|
T Consensus 79 kA~vi~lvyavd~~~T~D~ist--~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE-tciec 155 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRIST--KWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE-TCIEC 155 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhh--hhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH-HHHhh
Confidence 9999999999999888776654 3454444333 68999999999999864433 334444444332 68999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 046233 490 SAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L 508 (518)
||++-.++.++|....+.+
T Consensus 156 SA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAV 174 (625)
T ss_pred hhhhhhhhHhhhhhhhhee
Confidence 9999999999999877654
No 295
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.03 E-value=1.4e-09 Score=112.19 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=78.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcc-c-
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRH-T- 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~-I- 416 (518)
..+|+|+|.+|+|||||+|+|++.+.. ++.+..+|..+.......+ +..+.++||||+.+........ ...++. +
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~-G~~l~VIDTPGL~d~~~~~e~~-~~~ik~~l~ 115 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA-GFTLNIIDTPGLIEGGYINDQA-VNIIKRFLL 115 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC-CeEEEEEECCCCCchHHHHHHH-HHHHHHHhh
Confidence 458999999999999999999987653 3445555555544444444 6799999999998753322111 111111 1
Q ss_pred -cccCceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 417 -ERCSALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 417 -erADvlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
...|++|||..+... ....+...+......|... .-++.|||+|++|...
T Consensus 116 ~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~-iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 116 GKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD-IWRKSLVVLTHAQFSP 167 (313)
T ss_pred cCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh-hhccEEEEEECCccCC
Confidence 258999999655432 2223333333333344433 2368999999999763
No 296
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.9e-09 Score=109.82 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=103.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-------CCCCCceeeeceeeEEEec--------CCceEEEEcCCCCccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-------IANYPFTTLLPNLGVVSFD--------YDSTMVVADLPGLLEGAHQG 405 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-------Ia~ypfTTl~p~lg~v~~~--------~~~~l~I~DTPGliegas~~ 405 (518)
.+++++|...+|||||.++|+.-... .+.....|++.-...+... ...+++++|+||+-.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 48999999999999999999753221 1222344555433333322 124689999999732
Q ss_pred CCcchhhhccccccCceEEEEeCCCCCCHHHHHHHH-HHHHhcCCCCCCCCEEEEEeCCCCCCccc---chHHHHH----
Q 046233 406 FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVR-LELEMFSPEIAEKPYIVAFNKMDLPEAYE---KWPSFKE---- 477 (518)
Q Consensus 406 ~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~-~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---~~eel~~---- 477 (518)
|.+..+-...-.|+.++|+|+...-..+..+.|. -+ +..+..+||+||+|+..... .++....
T Consensus 83 --LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~-------~~c~klvvvinkid~lpE~qr~ski~k~~kk~~K 153 (522)
T KOG0461|consen 83 --LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE-------LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRK 153 (522)
T ss_pred --HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhh-------hhccceEEEEeccccccchhhhhHHHHHHHHHHH
Confidence 5455555556679999999998754333333322 22 24567899999999875422 2233322
Q ss_pred HHHhc----CCceEEEeccCC----CCHHHHHHHHHHHHHhhhHh
Q 046233 478 KLQAR----GIEPFCMSAVKR----EGTHEVISAAYQLLQKNKEA 514 (518)
Q Consensus 478 ~l~~~----g~~i~~ISAktg----eGI~eL~~~L~e~L~~~~~~ 514 (518)
-++.. +.|++++||+.| ++|.+|.+.|...+-+.+++
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 23332 369999999999 78888888888777655443
No 297
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.4e-09 Score=112.42 Aligned_cols=154 Identities=19% Similarity=0.186 Sum_probs=114.0
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCC---CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTI---ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~I---a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
|+..|.--.|||||+.++++..... ....++|++..+......+ ..+.++|.||+.+ +...++..+.-.
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-~~~~fIDvpgh~~-------~i~~miag~~~~ 74 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-GVMGFIDVPGHPD-------FISNLLAGLGGI 74 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-CceEEeeCCCcHH-------HHHHHHhhhcCC
Confidence 7788999999999999999865432 3456889888777777764 5899999999876 445567777789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh---cCCceEEEeccCCCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA---RGIEPFCMSAVKREG 496 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~---~g~~i~~ISAktgeG 496 (518)
|.+++|||+.+.-..+..+.+ ..|.++. .+..+||+||+|+.+.....+.+.+.++. ...++|.+||++|+|
T Consensus 75 d~alLvV~~deGl~~qtgEhL-~iLdllg----i~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~G 149 (447)
T COG3276 75 DYALLVVAADEGLMAQTGEHL-LILDLLG----IKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRG 149 (447)
T ss_pred ceEEEEEeCccCcchhhHHHH-HHHHhcC----CCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCC
Confidence 999999999765554544443 3344432 34569999999998754322223333332 256889999999999
Q ss_pred HHHHHHHHHHHHH
Q 046233 497 THEVISAAYQLLQ 509 (518)
Q Consensus 497 I~eL~~~L~e~L~ 509 (518)
|++|...|.+++.
T Consensus 150 I~~Lk~~l~~L~~ 162 (447)
T COG3276 150 IEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999985
No 298
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.98 E-value=5.4e-09 Score=101.38 Aligned_cols=154 Identities=17% Similarity=0.153 Sum_probs=89.4
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccCC---CC---CCCCceeeece------eeEEEec-----------------
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQP---TI---ANYPFTTLLPN------LGVVSFD----------------- 385 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~---~I---a~ypfTTl~p~------lg~v~~~----------------- 385 (518)
++-+.++.|+|+|++|||||||++++..... ++ ........+.. ..++...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 4445688999999999999999999976411 10 00011111110 0011110
Q ss_pred ----CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 386 ----YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 386 ----~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
.+..+.|++|.|...... .+ . ...+..+.|+|+.+.+... .... ....+|.++|+|
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~-------~~-~--~~~~~~i~Vvd~~~~d~~~-----~~~~-----~~~~~a~iiv~N 156 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA-------DF-D--LGEHMRVVLLSVTEGDDKP-----LKYP-----GMFKEADLIVIN 156 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc-------cc-c--cccCeEEEEEecCcccchh-----hhhH-----hHHhhCCEEEEE
Confidence 023577888887321111 11 0 1234456788887643211 0101 113478899999
Q ss_pred CCCCCCccc-chHHHHHHHHhc--CCceEEEeccCCCCHHHHHHHHHHHH
Q 046233 462 KMDLPEAYE-KWPSFKEKLQAR--GIEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 462 KiDL~~~~e-~~eel~~~l~~~--g~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
|+|+..... ....+.+.++.. ..+++++||+++.|+++++++|.+..
T Consensus 157 K~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 157 KADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 999975322 233444445443 37899999999999999999998753
No 299
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.97 E-value=1.6e-09 Score=123.56 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=75.8
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC----------CCC------CceeeeceeeE--EEe-cCCceEEEEcCCCC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI----------ANY------PFTTLLPNLGV--VSF-DYDSTMVVADLPGL 398 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------a~y------pfTTl~p~lg~--v~~-~~~~~l~I~DTPGl 398 (518)
+.+.+|+++|..++|||||+.+|+.....+ .++ ..+|+...... +.+ ..+..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997531111 111 22343332211 112 12468999999998
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
.+ +.......+..+|++|+|+|+...-...+...+..... .+.|+++|+||+|...
T Consensus 97 ~~-------f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~------~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VD-------FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK------ENVKPVLFINKVDRLI 152 (720)
T ss_pred cc-------cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH------cCCCEEEEEEChhccc
Confidence 66 22345666788999999999987543333333332222 3578899999999864
No 300
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.96 E-value=1.8e-09 Score=125.07 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=79.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCC----------C------CCceeeeceeeEEEec---------------C
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIA----------N------YPFTTLLPNLGVVSFD---------------Y 386 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----------~------ypfTTl~p~lg~v~~~---------------~ 386 (518)
..+.+|+++|..++|||||+.+|+.....+. + ....|+......+.+. .
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 4577999999999999999999975432111 0 1122333332223332 1
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+..+.++||||+.+ +.....+.+..||++|+|+|+...-...+...|...+. .++|+|+++||+|+.
T Consensus 97 ~~~inliDtPGh~d-------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG------ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHH-------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH------CCCCEEEEEECCccc
Confidence 35689999999876 33445666788999999999998655555554444333 468999999999997
No 301
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.4e-09 Score=114.49 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=96.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCC---------------CC----------------CCCceeeeceeeEEEecCC
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPT---------------IA----------------NYPFTTLLPNLGVVSFDYD 387 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~---------------Ia----------------~ypfTTl~p~lg~v~~~~~ 387 (518)
....++++|..+||||||+-+|+..--. .+ ...+.|.+.....+.. ..
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes-~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES-KS 254 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec-Cc
Confidence 4457889999999999999998642110 00 1122233222222221 23
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCC------CCHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAE------QPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~------~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
..++|+|+||+-+ +...++..+..||+.|+|+|++.. ++..+.+.....|+.+ .-..+||++|
T Consensus 255 ~~~tliDaPGhkd-------Fi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L----gi~qlivaiN 323 (603)
T KOG0458|consen 255 KIVTLIDAPGHKD-------FIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL----GISQLIVAIN 323 (603)
T ss_pred eeEEEecCCCccc-------cchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc----CcceEEEEee
Confidence 5799999999655 555677778889999999999863 2333333344444433 2456899999
Q ss_pred CCCCCCc-ccchHHHHHHHHh-----c-----CCceEEEeccCCCCHHHH
Q 046233 462 KMDLPEA-YEKWPSFKEKLQA-----R-----GIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 462 KiDL~~~-~e~~eel~~~l~~-----~-----g~~i~~ISAktgeGI~eL 500 (518)
|||++.- .+..++++..+.. . .+.|+|||+.+|+|+-..
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 9999853 3344555443322 1 458999999999998543
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=98.95 E-value=2.8e-09 Score=123.33 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=78.6
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCCC----------------CCCceeeeceeeEEEecC---------CceEE
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTIA----------------NYPFTTLLPNLGVVSFDY---------DSTMV 391 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----------------~ypfTTl~p~lg~v~~~~---------~~~l~ 391 (518)
...+.+|+++|..++|||||+.+|+.....+. ....+|+......+.+.. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34566999999999999999999986432211 011223332222233321 34689
Q ss_pred EEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 392 I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
++||||+.+ +.......+..+|++|+|+|+...-...+...| ..+.. .++|+|+++||+|+.
T Consensus 96 liDtPG~~~-------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH-----cCCCEEEEEEChhhh
Confidence 999999866 334456667889999999999886554444444 33332 358999999999997
No 303
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-10 Score=109.18 Aligned_cols=165 Identities=14% Similarity=0.064 Sum_probs=114.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC--ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD--STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~--~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
+.++.++|.-++|||+++.+.+...+..+.......+..+.++++++. .++.|||+.|+..... ..-=+++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~-------mtrVyyk 97 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGN-------MTRVYYK 97 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcc-------eEEEEec
Confidence 457889999999999999998876543222222223344555666543 4789999999975322 2222356
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhc--CCCCCCCCEEEEEeCCCCCCccc--chHHHHHHHHhcCC-ceEEEecc
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMF--SPEIAEKPYIVAFNKMDLPEAYE--KWPSFKEKLQARGI-EPFCMSAV 492 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~--~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l~~~g~-~i~~ISAk 492 (518)
.+.+.++|+|++....++....|.++|..- -+.-.-.|+++..||||+..... ....+.++.+..++ ..+++|||
T Consensus 98 ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~K 177 (229)
T KOG4423|consen 98 EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAK 177 (229)
T ss_pred CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccc
Confidence 699999999999988888888787776521 12233467899999999975322 12344444455544 67999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 046233 493 KREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~~ 511 (518)
.+.+++|..+.|.+.+-..
T Consensus 178 enkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 178 ENKNIPEAQRELVEKILVN 196 (229)
T ss_pred cccChhHHHHHHHHHHHhh
Confidence 9999999999998876543
No 304
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=6.1e-09 Score=115.35 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=102.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec------------C-----CceEEEEcCCCCccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD------------Y-----DSTMVVADLPGLLEGAH 403 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~------------~-----~~~l~I~DTPGliegas 403 (518)
+=+|++|....|||-|+..|.+.....+.+-++|...-...+... . -..+.++||||+..+..
T Consensus 476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn 555 (1064)
T KOG1144|consen 476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN 555 (1064)
T ss_pred ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence 358999999999999999999877665555555542211111110 0 12589999999765332
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--------------
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-------------- 469 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-------------- 469 (518)
.-.|....||++|+|+|+.+.--.+.++.+. .|+ ..+.|+||++||+|..-..
T Consensus 556 -------lRsrgsslC~~aIlvvdImhGlepqtiESi~-lLR-----~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 556 -------LRSRGSSLCDLAILVVDIMHGLEPQTIESIN-LLR-----MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred -------hhhccccccceEEEEeehhccCCcchhHHHH-HHH-----hcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 1233455699999999999854333444332 232 2578999999999976211
Q ss_pred ---cchHHHHH-------HHHhcC---------------CceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 470 ---EKWPSFKE-------KLQARG---------------IEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 470 ---e~~eel~~-------~l~~~g---------------~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
....++.. .++.++ +.++|+||.+|+||.+|+.+|.++.+..
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 01112222 222221 3678999999999999999999887654
No 305
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.92 E-value=1.8e-09 Score=108.41 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=91.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC----CC-----C-CCCcee--------------eeceeeEEEec----------
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP----TI-----A-NYPFTT--------------LLPNLGVVSFD---------- 385 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~----~I-----a-~ypfTT--------------l~p~lg~v~~~---------- 385 (518)
-..|+|.|.||||||||+.+|...-. ++ . ..|||- .++.+.+-...
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 34799999999999999999864311 11 0 111211 12222222211
Q ss_pred -----------CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q 046233 386 -----------YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK 454 (518)
Q Consensus 386 -----------~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~k 454 (518)
.+..++|+.|.|. ++.-..-..-||.+++|+-....+..+.++.=.-| .
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGv----------GQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE----------i 168 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGV----------GQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIME----------I 168 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESS----------STHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH----------H
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCC----------CccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhh----------h
Confidence 1235788888874 33333344569999999988776665444332222 3
Q ss_pred CEEEEEeCCCCCCcccchHHHHHHHHhc-------CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 455 PYIVAFNKMDLPEAYEKWPSFKEKLQAR-------GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 455 PiIVVlNKiDL~~~~e~~eel~~~l~~~-------g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
.-|+|+||+|+..+.....++...+... ..+++.+||.++.||++|++.|.+....
T Consensus 169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 169 ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp -SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3489999999776655555566555432 2489999999999999999999876543
No 306
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.89 E-value=1.4e-08 Score=101.53 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=47.9
Q ss_pred ceEEEEcCCCCccccccC------CCcchhhhcccc-ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 046233 388 STMVVADLPGLLEGAHQG------FGLGHEFLRHTE-RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAF 460 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~------~gLg~~fLr~Ie-rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVl 460 (518)
..++|+||||+...+..+ ..+......+++ ..+++++|+|+...-...+...+.+++. + ..+|.++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~--~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---P--QGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---H--cCCcEEEEE
Confidence 369999999997532111 112223344555 4569999999876433333233444443 2 468999999
Q ss_pred eCCCCCCcc
Q 046233 461 NKMDLPEAY 469 (518)
Q Consensus 461 NKiDL~~~~ 469 (518)
||+|.....
T Consensus 200 TK~D~~~~~ 208 (240)
T smart00053 200 TKLDLMDEG 208 (240)
T ss_pred ECCCCCCcc
Confidence 999998643
No 307
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.88 E-value=1.1e-08 Score=108.09 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=87.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC---CCC--CCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT---IAN--YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~--ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
-.+|+|+|.+|+|||||||+|.+-... .+. ..-||..++... ......+++||+||+..... -...|+.
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~--~p~~pnv~lWDlPG~gt~~f----~~~~Yl~ 108 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP--HPKFPNVTLWDLPGIGTPNF----PPEEYLK 108 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC--CCCCCCCeEEeCCCCCCCCC----CHHHHHH
Confidence 348999999999999999999763221 111 112344443322 23235799999999854322 2234444
Q ss_pred c--ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC--C----------cccchHHHHHHH-
Q 046233 415 H--TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP--E----------AYEKWPSFKEKL- 479 (518)
Q Consensus 415 ~--IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~--~----------~~e~~eel~~~l- 479 (518)
. +.+.|++|+|.+- ..+..+.... .+++. ..+|+.+|-+|+|.. . ..+.++.+++.+
T Consensus 109 ~~~~~~yD~fiii~s~--rf~~ndv~La-~~i~~-----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSE--RFTENDVQLA-KEIQR-----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp HTTGGG-SEEEEEESS--S--HHHHHHH-HHHHH-----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred HccccccCEEEEEeCC--CCchhhHHHH-HHHHH-----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence 3 5667887776643 3344444433 44442 478999999999961 1 112234444333
Q ss_pred ---HhcC---CceEEEeccC--CCCHHHHHHHHHHHHHhhhHh
Q 046233 480 ---QARG---IEPFCMSAVK--REGTHEVISAAYQLLQKNKEA 514 (518)
Q Consensus 480 ---~~~g---~~i~~ISAkt--geGI~eL~~~L~e~L~~~~~~ 514 (518)
+..+ .++|.||... ...+..|.+.|.+-|+.+++.
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 3223 4789999975 467889999999888877654
No 308
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.85 E-value=9.5e-09 Score=95.70 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=102.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCce-eeeceeeEEEe-cCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFT-TLLPNLGVVSF-DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfT-Tl~p~lg~v~~-~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+++|.+-.|||||+-.+.+..... .+..+ .+...-..+.+ +....+.|||+.|+.+... ..--....
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n-------~lPiac~d 92 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN-------MLPIACKD 92 (205)
T ss_pred EEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc-------cCceeecC
Confidence 389999999999999999998764421 11100 01111111221 1235789999999865221 11112356
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cc----hHHHHHHHHhcCCceEEEecc
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EK----WPSFKEKLQARGIEPFCMSAV 492 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~----~eel~~~l~~~g~~i~~ISAk 492 (518)
+-+++|++|.+.+.++..+..|......++. ..+| |+|++|-|+.-.- +. ....+...+..+.+.|.||+.
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~Nk--tAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts 169 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNK--TAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTS 169 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccCC--ccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecc
Confidence 7889999999999998888888776664432 3455 5579999975211 11 112223334447899999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 046233 493 KREGTHEVISAAYQLLQ 509 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~ 509 (518)
+..|++.+|..+...+-
T Consensus 170 ~sINv~KIFK~vlAklF 186 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLF 186 (205)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999998776654
No 309
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.84 E-value=3.3e-08 Score=95.95 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=54.3
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-ccchHHHHHHHHh--cCCceEEEeccCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA-YEKWPSFKEKLQA--RGIEPFCMSAVKRE 495 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~-~e~~eel~~~l~~--~g~~i~~ISAktge 495 (518)
++.+|.|+|+.+.+..... .... ....-++|+||+|+... ....+.+.+.++. ...+++++||++|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~~--~~~q--------i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK--GGPG--------ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhhhh--hHhH--------hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 5789999999875442110 0011 12234899999999853 2233444444444 35799999999999
Q ss_pred CHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLL 508 (518)
Q Consensus 496 GI~eL~~~L~e~L 508 (518)
|+++++++|.+.+
T Consensus 183 gi~el~~~i~~~~ 195 (199)
T TIGR00101 183 GLDTVIDWIEHYA 195 (199)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998765
No 310
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.84 E-value=3.1e-08 Score=101.04 Aligned_cols=150 Identities=21% Similarity=0.218 Sum_probs=93.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccC------CC---C-CCCCcee--------------eeceeeEEEec------------
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ------PT---I-ANYPFTT--------------LLPNLGVVSFD------------ 385 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak------~~---I-a~ypfTT--------------l~p~lg~v~~~------------ 385 (518)
.|++.|.||||||||+.+|...- .. + .+.|||- .+|+..+-...
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at 132 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRAT 132 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhhHHH
Confidence 79999999999999999986431 11 1 1222221 12222222211
Q ss_pred ---------CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCE
Q 046233 386 ---------YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPY 456 (518)
Q Consensus 386 ---------~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPi 456 (518)
.+..++|+.|-|... .-..-...||.+++|.=....+..+.++ .-+ ...-=
T Consensus 133 ~~~i~~ldAaG~DvIIVETVGvGQ----------sev~I~~~aDt~~~v~~pg~GD~~Q~iK---~Gi-------mEiaD 192 (323)
T COG1703 133 REAIKLLDAAGYDVIIVETVGVGQ----------SEVDIANMADTFLVVMIPGAGDDLQGIK---AGI-------MEIAD 192 (323)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCc----------chhHHhhhcceEEEEecCCCCcHHHHHH---hhh-------hhhhh
Confidence 123578888887532 2223345589999888666555543333 322 23345
Q ss_pred EEEEeCCCCCCcccchHHHHHHHHhc---------CCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 457 IVAFNKMDLPEAYEKWPSFKEKLQAR---------GIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 457 IVVlNKiDL~~~~e~~eel~~~l~~~---------g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
|+|+||+|...+.....++...+... ..+++.+||.+++|+++|++.|.+..+..
T Consensus 193 i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 193 IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 89999999776544444444444322 34899999999999999999998876644
No 311
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.79 E-value=5.5e-09 Score=106.96 Aligned_cols=57 Identities=18% Similarity=0.093 Sum_probs=43.2
Q ss_pred CCCCCEEEEEeCCCCCCcc-cchHHHHHHHHhc--CCceEEEeccCCCCHHHHHHHHHHH
Q 046233 451 IAEKPYIVAFNKMDLPEAY-EKWPSFKEKLQAR--GIEPFCMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 451 l~~kPiIVVlNKiDL~~~~-e~~eel~~~l~~~--g~~i~~ISAktgeGI~eL~~~L~e~ 507 (518)
+...+-++|+||+|+.... ..++.+.+.++.. ..+++++||++++|+++|++||.++
T Consensus 228 ~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 228 MFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3456779999999997532 2344555555544 5789999999999999999999874
No 312
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=5.1e-08 Score=110.35 Aligned_cols=131 Identities=24% Similarity=0.203 Sum_probs=91.1
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCC---CC---------------CCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTI---AN---------------YPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I---a~---------------ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
+..+.+|+++++..+|||||..+|+-..-.+ .. ..+.|+....-.+.+.++..++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 4567799999999999999999986432211 11 12445555555555553479999999999
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHH
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFK 476 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~ 476 (518)
.+ +.....+.++-+|++|.|+|+...-..+....|++..+ .+.|.++++||||..... ...+++.
T Consensus 87 VD-------Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~------~~vp~i~fiNKmDR~~a~~~~~~~~l~ 153 (697)
T COG0480 87 VD-------FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK------YGVPRILFVNKMDRLGADFYLVVEQLK 153 (697)
T ss_pred cc-------cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh------cCCCeEEEEECccccccChhhhHHHHH
Confidence 88 44557777888999999999998655554444444333 468999999999987543 2234444
Q ss_pred HHHH
Q 046233 477 EKLQ 480 (518)
Q Consensus 477 ~~l~ 480 (518)
..+.
T Consensus 154 ~~l~ 157 (697)
T COG0480 154 ERLG 157 (697)
T ss_pred HHhC
Confidence 4443
No 313
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=2.7e-08 Score=91.57 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=64.3
Q ss_pred hhhhccccc-cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEE
Q 046233 410 HEFLRHTER-CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFC 488 (518)
Q Consensus 410 ~~fLr~Ier-ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ 488 (518)
.+.++|+.+ ||++|+|+|++++....+. .+...+. ..++|+++|+||+|+..... ...+.......+.++++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~-----~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL-----ELGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH-----hCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEE
Confidence 345667654 9999999999875433332 2222222 13689999999999964322 22222222334568999
Q ss_pred EeccCCCCHHHHHHHHHHHHHh
Q 046233 489 MSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+||+++.|+++|++.|.+.++.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999988764
No 314
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.73 E-value=1.1e-08 Score=100.72 Aligned_cols=123 Identities=22% Similarity=0.173 Sum_probs=90.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhc-----
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLR----- 414 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr----- 414 (518)
.+|.|+|.+|+||||+-..+....... ...++.|++..-+.+.+-....+.+||+.|+... ...+++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f-------men~~~~q~d~ 77 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF-------MENYLSSQEDN 77 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHH-------HHHHHhhcchh
Confidence 478999999999999988876543221 3445667777666676665678899999998642 122322
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e 470 (518)
.+...++++||+|++..+...++......|+.+........+++.+.|+||.....
T Consensus 78 iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 78 IFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred hheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 25678999999999998888888888887775554445667899999999986543
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.72 E-value=5.5e-08 Score=108.31 Aligned_cols=126 Identities=15% Similarity=0.110 Sum_probs=78.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCC-CCCCC-CceeeeceeeEEEecCCceEEEEcCCCCccccccC---CCcchhhh
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQP-TIANY-PFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG---FGLGHEFL 413 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~y-pfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~---~gLg~~fL 413 (518)
.-.+|+|||.+|||||||+|+|++... .+..+ +.||. ........+ +..+.|+||||+.+..... ..+.....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~id-G~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQ-GVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEEC-CceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 335799999999999999999999764 33443 44443 322222233 5789999999998753211 11111222
Q ss_pred cccc--ccCceEEEEeCCCCCC-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 414 RHTE--RCSALVHVIDGSAEQP-EFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 414 r~Ie--rADvlL~VVDaS~~~s-~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+.+. .+|++|||+.+..... .++...+......|.... -..+|||+|..|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I-wk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI-WFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh-HcCEEEEEeCCccCC
Confidence 2223 4789999988764333 234444444444555432 367899999999875
No 316
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.68 E-value=8.7e-08 Score=95.89 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=66.4
Q ss_pred cccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccC
Q 046233 415 HTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAkt 493 (518)
+++.+|.+++|+|+.++. ++..+..|...+.. .+.|++||+||+||........+..+.+...+++++.+||++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 366799999999999876 66666555544431 468999999999997544333344556666788999999999
Q ss_pred CCCHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQ 506 (518)
Q Consensus 494 geGI~eL~~~L~e 506 (518)
+.|+++|++.|..
T Consensus 108 g~gi~eLf~~l~~ 120 (245)
T TIGR00157 108 QDGLKELIEALQN 120 (245)
T ss_pred chhHHHHHhhhcC
Confidence 9999999998763
No 317
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1e-07 Score=99.35 Aligned_cols=123 Identities=24% Similarity=0.307 Sum_probs=85.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC---CCCCCCceeeeceeeEEEe-------------cC------------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP---TIANYPFTTLLPNLGVVSF-------------DY------------------ 386 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~---~Ia~ypfTTl~p~lg~v~~-------------~~------------------ 386 (518)
+-|.++|....||||+|+.|+.... .++..|.|.. .+.++.- +.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~--Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR--FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce--eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 4699999999999999999997653 2333332211 1111110 00
Q ss_pred ---------CceEEEEcCCCCccccccCCCcchhhhcc----ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 046233 387 ---------DSTMVVADLPGLLEGAHQGFGLGHEFLRH----TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAE 453 (518)
Q Consensus 387 ---------~~~l~I~DTPGliegas~~~gLg~~fLr~----IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~ 453 (518)
-.+++|+||||+.++..+....+..|-.. +++||.|++++|+..-+--..++.+...|+- ..
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG-----~E 211 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG-----HE 211 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC-----Cc
Confidence 01699999999999877754444444332 5789999999999887777778777777762 34
Q ss_pred CCEEEEEeCCCCCCccc
Q 046233 454 KPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 454 kPiIVVlNKiDL~~~~e 470 (518)
-.+-||+||+|+++.++
T Consensus 212 dkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ceeEEEeccccccCHHH
Confidence 56788999999987654
No 318
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=9.8e-08 Score=97.08 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=102.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCC-----------CCC-----CCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQP-----------TIA-----NYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~-----------~Ia-----~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|...+|+.||..+.|||||..+|+..-. .+. ...+.|+.+.--.+... ...+..+|+||+-+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~-~rhyahVDcPGHaD- 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETA-NRHYAHVDCPGHAD- 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecC-CceEEeccCCChHH-
Confidence 3456899999999999999999875311 111 12345554433333333 46899999999755
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchH----HHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWP----SFK 476 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~e----el~ 476 (518)
+..+++....+.|..|+|+.+.+....+..+.+...-+ ...| +++++||+|+.+..+.++ +++
T Consensus 88 ------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq------vGvp~ivvflnK~Dmvdd~ellelVemEvr 155 (394)
T COG0050 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ------VGVPYIVVFLNKVDMVDDEELLELVEMEVR 155 (394)
T ss_pred ------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh------cCCcEEEEEEecccccCcHHHHHHHHHHHH
Confidence 44556666778999999999998655455444332111 3454 566789999998655443 456
Q ss_pred HHHHhcC-----CceEEEeccCC-C-------CHHHHHHHHHHHHHhh
Q 046233 477 EKLQARG-----IEPFCMSAVKR-E-------GTHEVISAAYQLLQKN 511 (518)
Q Consensus 477 ~~l~~~g-----~~i~~ISAktg-e-------GI~eL~~~L~e~L~~~ 511 (518)
++|...+ .|++.-||+.. + .|.+|++.+.++++..
T Consensus 156 eLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 156 ELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 6666653 46777777643 2 3456666666655543
No 319
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.65 E-value=8.8e-08 Score=91.20 Aligned_cols=91 Identities=24% Similarity=0.208 Sum_probs=61.5
Q ss_pred hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH-----HhcC--
Q 046233 411 EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL-----QARG-- 483 (518)
Q Consensus 411 ~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l-----~~~g-- 483 (518)
.+..+++++|++|+|+|+++...... ..+.. ...++|+++|+||+|+.........+..++ ...+
T Consensus 27 ~l~~~~~~ad~il~VvD~~~~~~~~~-----~~l~~---~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 27 LLSSISPKKALVVHVVDIFDFPGSLI-----PRLRL---FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHhcccCCcEEEEEEECccCCCccc-----hhHHH---hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 34456788999999999987542211 11111 124689999999999975433322232222 2222
Q ss_pred -CceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 484 -IEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 484 -~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
..++++||++++|+++|+++|.+.++
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 26899999999999999999998875
No 320
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.58 E-value=9.1e-08 Score=96.70 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=95.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC---CCCCceeeeceeeEEEecCCceEEEEcCCCCcc-----ccccC-CCcch
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI---ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLE-----GAHQG-FGLGH 410 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I---a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie-----gas~~-~gLg~ 410 (518)
.+.++++|.+|+|||||||.+++.+... ...+.-|...+ . +..+.++.++|+||+.. .+... ..+..
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in--~--f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAIN--H--FHVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeee--e--eeccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 4689999999999999999998764311 11333333222 1 22246899999999532 11111 12334
Q ss_pred hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-----chHHHHHHHH-----
Q 046233 411 EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-----KWPSFKEKLQ----- 480 (518)
Q Consensus 411 ~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-----~~eel~~~l~----- 480 (518)
.|+..-+.--.+++++|++.+-...+... ..++.. .+.|+.+|+||||....-. ....+...+.
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~~~-i~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDNPE-IAWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCChHH-HHHHhh-----cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 44443344455677888887544333332 234432 5799999999999864321 0011111111
Q ss_pred --hcCCceEEEeccCCCCHHHHHHHHHHHH
Q 046233 481 --ARGIEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 481 --~~g~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
....+.+.+|+.++.|+++|+-.|.+..
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhhh
Confidence 1134677899999999999998887654
No 321
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.57 E-value=1.7e-07 Score=86.59 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=64.0
Q ss_pred hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCceEEEe
Q 046233 412 FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEPFCMS 490 (518)
Q Consensus 412 fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i~~IS 490 (518)
.++.++.+|++++|+|++.+.... ...+...+... ..++|+++|+||+|+....+ ...+...+... ...++++|
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~~~-~~~~~~~~~~~~~~~~~~iS 76 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE---KPHKHLIFVLNKCDLVPTWV-TARWVKILSKEYPTIAFHAS 76 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc---cCCCCEEEEEEchhcCCHHH-HHHHHHHHhcCCcEEEEEee
Confidence 356678899999999998864322 23344444421 23589999999999975432 23334444332 22358899
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 046233 491 AVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~ 509 (518)
|+++.|+++|+++|.+++.
T Consensus 77 a~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 77 INNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999988764
No 322
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.54 E-value=6.6e-07 Score=86.56 Aligned_cols=78 Identities=17% Similarity=0.061 Sum_probs=53.0
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhc--CCceEEEeccCCCCH
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQAR--GIEPFCMSAVKREGT 497 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~--g~~i~~ISAktgeGI 497 (518)
.-|+|+|++..+-.. ++..|.+.. .-++|+||.||...... ++.+.+..+.. ..+++++|+++|+|+
T Consensus 120 ~~v~VidvteGe~~P---------~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~ 189 (202)
T COG0378 120 LRVVVIDVTEGEDIP---------RKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL 189 (202)
T ss_pred eEEEEEECCCCCCCc---------ccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence 678888888753211 121233333 56899999999865433 33344444433 579999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 498 HEVISAAYQLL 508 (518)
Q Consensus 498 ~eL~~~L~e~L 508 (518)
+++++|+...+
T Consensus 190 ~~~~~~i~~~~ 200 (202)
T COG0378 190 DEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHhhc
Confidence 99999997654
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=6.6e-07 Score=95.19 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=87.7
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccCCC----------------CC------CCCceeeeceeeEEEecCCceEEE
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQPT----------------IA------NYPFTTLLPNLGVVSFDYDSTMVV 392 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~----------------Ia------~ypfTTl~p~lg~v~~~~~~~l~I 392 (518)
-|...-...++|-.|.||||||...|+---.. .+ ...+.++...+-...|. +..+.|
T Consensus 7 ~Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-~~~iNL 85 (528)
T COG4108 7 QEVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYA-DCLVNL 85 (528)
T ss_pred HHHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccC-CeEEec
Confidence 34444557899999999999999998521110 01 11233333333333444 468999
Q ss_pred EcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--cc
Q 046233 393 ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA--YE 470 (518)
Q Consensus 393 ~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~--~e 470 (518)
.||||+.+ +....+|.+-.+|.+|+|||+...--.++++ |.+..+ +.+.|++-.+||+|.... -+
T Consensus 86 LDTPGHeD-------FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-LfeVcr-----lR~iPI~TFiNKlDR~~rdP~E 152 (528)
T COG4108 86 LDTPGHED-------FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFEVCR-----LRDIPIFTFINKLDREGRDPLE 152 (528)
T ss_pred cCCCCccc-------cchhHHHHHHhhheeeEEEecccCccHHHHH-HHHHHh-----hcCCceEEEeeccccccCChHH
Confidence 99999877 4456788888899999999998764444433 344443 468999999999998743 24
Q ss_pred chHHHHHHHH
Q 046233 471 KWPSFKEKLQ 480 (518)
Q Consensus 471 ~~eel~~~l~ 480 (518)
.++++.+.|.
T Consensus 153 LLdEiE~~L~ 162 (528)
T COG4108 153 LLDEIEEELG 162 (528)
T ss_pred HHHHHHHHhC
Confidence 4555555554
No 324
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.51 E-value=3.3e-07 Score=93.69 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=73.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCC--C--------CceeeeceeeEEEec-CCceEEEEcCCCCccccccCCC--
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIAN--Y--------PFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFG-- 407 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~--y--------pfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~g-- 407 (518)
.+|.|+|.+|+|||||||.|++....... + ...++......+.-+ ....++|+||||+.+.......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 47889999999999999999986442221 1 111122211122211 1247899999998653221100
Q ss_pred -----cchhhhccc-------------cccCceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 408 -----LGHEFLRHT-------------ERCSALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 408 -----Lg~~fLr~I-------------erADvlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+-.+|-.++ .+.|++||+++.+.. -...+++.+ +.|. ...++|-|+.|+|....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~m-k~Ls------~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFM-KRLS------KRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHH-HHHT------TTSEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHH-HHhc------ccccEEeEEecccccCH
Confidence 001111111 368999999998753 334444433 3333 34678999999999876
Q ss_pred ccc---hHHHHHHHHhcCCceEEE
Q 046233 469 YEK---WPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 469 ~e~---~eel~~~l~~~g~~i~~I 489 (518)
.+. ...+++.++..++++|..
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHHcCceeecc
Confidence 543 234455555556666553
No 325
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.51 E-value=1.5e-07 Score=89.43 Aligned_cols=54 Identities=31% Similarity=0.527 Sum_probs=44.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
.+|+++|.||||||||+|+|++.+. .++.+|++|..... +.++ ..+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~--~~~~--~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQE--VHLD--KKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEE--EEeC--CCEEEEECcCC
Confidence 5899999999999999999998765 67889999986443 3333 47999999995
No 326
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.44 E-value=9.9e-07 Score=81.49 Aligned_cols=84 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|+.++............+. ..++|+|+|+||+|+....+ ...+...+.. ....++++||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~-----~~~~p~IiVlNK~Dl~~~~~-~~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIK-----EKGKKLILVLNKADLVPKEV-LRKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHh-----cCCCCEEEEEechhcCCHHH-HHHHHHHHHhhCCceEEEEeccCCcChh
Confidence 78999999987654433221112222 24689999999999975432 2233223332 24578999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
+|++.|.+.+.
T Consensus 75 ~L~~~i~~~~~ 85 (155)
T cd01849 75 KKESAFTKQTN 85 (155)
T ss_pred hHHHHHHHHhH
Confidence 99999987654
No 327
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.43 E-value=3e-07 Score=85.04 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=42.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
..|+++|.||||||||+|+|.+... .++.++.+|.... .+... ..+.++||||+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~--~~~~liDtPGi 157 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM--KRIYLIDCPGV 157 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC--CCEEEEECcCC
Confidence 3688999999999999999998654 5688888887543 23332 46899999995
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.41 E-value=2.7e-07 Score=87.86 Aligned_cols=54 Identities=35% Similarity=0.366 Sum_probs=43.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC---------CCCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ---------PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak---------~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
..++++|.+|||||||+|+|.+.. ..++..|+||+.+....+. ..+.|+||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~----~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG----NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC----CCCEEEeCcCC
Confidence 479999999999999999998743 3557888999987654442 25899999995
No 329
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.41 E-value=7.6e-07 Score=83.65 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=64.4
Q ss_pred hhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEE
Q 046233 410 HEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 410 ~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~I 489 (518)
.+..+.++.||++++|+|++.+....... +...+ .++|+++|+||+|+..... ...+.+.+......++.+
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~-i~~~~-------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPL-LEKIL-------GNKPRIIVLNKADLADPKK-TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChh-hHhHh-------cCCCEEEEEehhhcCChHH-HHHHHHHHHhcCCeEEEE
Confidence 34566788999999999998754332221 22211 3579999999999964422 223334444445678999
Q ss_pred eccCCCCHHHHHHHHHHHHH
Q 046233 490 SAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~ 509 (518)
||+++.|+++|...|.+.+.
T Consensus 82 Sa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ECCCcccHHHHHHHHHHHHH
Confidence 99999999999999998875
No 330
>PRK00098 GTPase RsgA; Reviewed
Probab=98.38 E-value=9.8e-07 Score=90.76 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=61.8
Q ss_pred ccccCceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
++++|++++|+|+.++.+.... ..+...+. ..++|++||+||+||....+....+.+.+...+++++++||+++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~-----~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-----ANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5679999999999877654332 33333232 14689999999999974333334455556666789999999999
Q ss_pred CCHHHHHHHHH
Q 046233 495 EGTHEVISAAY 505 (518)
Q Consensus 495 eGI~eL~~~L~ 505 (518)
.|+++|++.|.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998874
No 331
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.36 E-value=1e-06 Score=89.53 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=67.1
Q ss_pred hhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEE
Q 046233 410 HEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 410 ~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~I 489 (518)
.++.+.++.||++|+|+|+..+...... .+...+ .++|+|+|+||+|+..... ...+.+.+...+.+++.+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l-------~~kp~IiVlNK~DL~~~~~-~~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR-------GNKPRLIVLNKADLADPAV-TKQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH-------CCCCEEEEEEccccCCHHH-HHHHHHHHHHcCCeEEEE
Confidence 3456678899999999999875443322 122222 2589999999999965422 233444454445688999
Q ss_pred eccCCCCHHHHHHHHHHHHHhhh
Q 046233 490 SAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~~~~ 512 (518)
||+++.|+++|++.|.+.++...
T Consensus 84 Sa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred ECCCcccHHHHHHHHHHHHHHhh
Confidence 99999999999999998886543
No 332
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.36 E-value=9e-07 Score=80.60 Aligned_cols=82 Identities=21% Similarity=0.249 Sum_probs=58.5
Q ss_pred hhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEE
Q 046233 410 HEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 410 ~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~I 489 (518)
..++++++.||++++|+|+..+....+. .+...+.... .++|+++|+||+|+..... ...+.+.++..+.+++++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~---~~k~~iivlNK~DL~~~~~-~~~~~~~~~~~~~~ii~i 77 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVD---PRKKNILLLNKADLLTEEQ-RKAWAEYFKKEGIVVVFF 77 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhcc---CCCcEEEEEechhcCCHHH-HHHHHHHHHhcCCeEEEE
Confidence 3577889999999999999886544322 3444444321 3689999999999975432 345556666667789999
Q ss_pred eccCCCC
Q 046233 490 SAVKREG 496 (518)
Q Consensus 490 SAktgeG 496 (518)
||+++.+
T Consensus 78 Sa~~~~~ 84 (141)
T cd01857 78 SALKENA 84 (141)
T ss_pred EecCCCc
Confidence 9998753
No 333
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.1e-06 Score=96.95 Aligned_cols=115 Identities=19% Similarity=0.277 Sum_probs=80.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCC-CC-----CCCCceee-----------eceeeEEEecC----CceEEEEcCCC
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQP-TI-----ANYPFTTL-----------LPNLGVVSFDY----DSTMVVADLPG 397 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~-~I-----a~ypfTTl-----------~p~lg~v~~~~----~~~l~I~DTPG 397 (518)
.+..|+++|+-.+|||+|+..|..... .. .+..+|+. ..+.-.+-..+ ..-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 456899999999999999999976532 11 11122221 11111111111 13589999999
Q ss_pred CccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 398 LLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 398 liegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+.. +..+....++.+|++++|+|+...-.+..-+.+...++ .+.|+++|+||+|..
T Consensus 207 HVn-------F~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVN-------FSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRL 262 (971)
T ss_pred ccc-------chHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHH
Confidence 877 44556677888999999999999877777666666665 578999999999975
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=98.31 E-value=2.3e-06 Score=90.24 Aligned_cols=86 Identities=15% Similarity=0.264 Sum_probs=62.4
Q ss_pred cccccCceEEEEeCCCCCCH-HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccC
Q 046233 415 HTERCSALVHVIDGSAEQPE-FEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~-e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAkt 493 (518)
.+..+|.+++|+|+.++... ..+..+..... ..++|++||+||+||....+ ...+.+.+...+++++++||++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-----~~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAE-----STGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-----HCCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEEcCC
Confidence 36779999999999876532 22233222221 24689999999999975432 3445556666788999999999
Q ss_pred CCCHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQ 506 (518)
Q Consensus 494 geGI~eL~~~L~e 506 (518)
+.|+++|+++|..
T Consensus 160 g~GI~eL~~~L~~ 172 (352)
T PRK12289 160 GIGLEALLEQLRN 172 (352)
T ss_pred CCCHHHHhhhhcc
Confidence 9999999998864
No 335
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.31 E-value=1.2e-06 Score=92.38 Aligned_cols=86 Identities=23% Similarity=0.303 Sum_probs=57.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC------CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ------PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak------~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
.+|.+||.+|||||||+|+|++.. ..++.+|+||+.... +.++ ..+.++||||+........-+....++
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~~--~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPLD--DGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEeC--CCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 479999999999999999999853 356889999987653 3332 357899999997642211112222222
Q ss_pred c---ccccCceEEEEeCCC
Q 046233 415 H---TERCSALVHVIDGSA 430 (518)
Q Consensus 415 ~---IerADvlL~VVDaS~ 430 (518)
. -+......|++|...
T Consensus 231 ~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 231 YITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred hcCCCCccCceEEEeCCCC
Confidence 2 134566777777654
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.31 E-value=1.1e-06 Score=89.79 Aligned_cols=57 Identities=28% Similarity=0.404 Sum_probs=47.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
.+|+++|.||||||||+|+|++.+. .+++.|++|.... .+..+ ..+.++||||+...
T Consensus 122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~--~~~~l~DtPGi~~~ 179 (287)
T PRK09563 122 IRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG--KGLELLDTPGILWP 179 (287)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC--CcEEEEECCCcCCC
Confidence 4799999999999999999998775 6788999998764 34443 46999999999754
No 337
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.30 E-value=9.8e-07 Score=81.51 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=44.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
..+++++|.||+|||||+|+|++... .++..++||..+.... ++ ..+.++||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--LD--NKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--ec--CCEEEEECCCC
Confidence 45799999999999999999998763 5677889998876543 22 46999999995
No 338
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.29 E-value=1.2e-06 Score=79.87 Aligned_cols=54 Identities=30% Similarity=0.559 Sum_probs=42.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGli 399 (518)
+++++|.+|+|||||+|+|++... .++..+.+|.... .+.++ ..+.||||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLT--PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeC--CCEEEEECCCcC
Confidence 789999999999999999998764 4566677776543 34443 368999999974
No 339
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=8.1e-07 Score=92.50 Aligned_cols=57 Identities=33% Similarity=0.489 Sum_probs=46.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
.+|++||.||||||||||+|.+... .++.+|++|.... .+... ..+.|+||||++-.
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~--~~i~LlDtPGii~~ 190 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLD--DGIYLLDTPGIIPP 190 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcC--CCeEEecCCCcCCC
Confidence 5799999999999999999998766 5689999888544 33333 45999999999753
No 340
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.28 E-value=1.5e-06 Score=88.84 Aligned_cols=102 Identities=22% Similarity=0.374 Sum_probs=71.2
Q ss_pred CCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH
Q 046233 395 LPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS 474 (518)
Q Consensus 395 TPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee 474 (518)
.||+...+ ..++.+.++.||++|+|+|+..+...... .+...+ .++|+++|+||+|+.... ....
T Consensus 7 fpgHm~k~------~~~l~~~l~~aDvIL~VvDar~p~~~~~~-~l~~~~-------~~kp~iiVlNK~DL~~~~-~~~~ 71 (287)
T PRK09563 7 FPGHMAKA------RREIKENLKLVDVVIEVLDARIPLSSENP-MIDKII-------GNKPRLLILNKSDLADPE-VTKK 71 (287)
T ss_pred cHHHHHHH------HHHHHHHhhhCCEEEEEEECCCCCCCCCh-hHHHHh-------CCCCEEEEEEchhcCCHH-HHHH
Confidence 57764422 23566778999999999999875443321 122222 268999999999996442 2334
Q ss_pred HHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 475 FKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 475 l~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+.+.+...+.+++.+||+++.|+++|++.|.+.++..
T Consensus 72 ~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 72 WIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 4444544466889999999999999999999888654
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.27 E-value=1.3e-06 Score=88.75 Aligned_cols=57 Identities=30% Similarity=0.430 Sum_probs=46.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC-CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ-PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak-~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
.+|++||.||||||||+|+|++.+ ..++..|++|..+. .+.+. ..+.++||||+...
T Consensus 119 ~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~--~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 119 IRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS--DGLELLDTPGILWP 176 (276)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC--CCEEEEECCCcccC
Confidence 479999999999999999999876 46688999998764 34443 36899999999653
No 342
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.25 E-value=8.3e-06 Score=84.19 Aligned_cols=162 Identities=17% Similarity=0.052 Sum_probs=95.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe---cCCceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF---DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~---~~~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
-..|.++|..++||||||.+|-+... ..+..-+...+-.++- ++..++.+|=+-|-.- |. +|.+..+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~--h~--~LLk~al~at 124 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLY--HK--GLLKFALPAT 124 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchh--hh--hHHhhccccc
Confidence 34799999999999999999988652 2222233222111211 1224667776666422 22 2333233322
Q ss_pred ccc-CceEEEEeCCCC-CCHHHHHHHHHHHHh-------------------------cCC--------------------
Q 046233 417 ERC-SALVHVIDGSAE-QPEFEFDAVRLELEM-------------------------FSP-------------------- 449 (518)
Q Consensus 417 erA-DvlL~VVDaS~~-~s~e~~~~L~~eL~~-------------------------~~~-------------------- 449 (518)
.-+ -++|+++|++++ ...+.++.|...+.. |..
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 223 356788888876 333333333332221 100
Q ss_pred --------------CCCCCCEEEEEeCCCCCCc--------ccchHH----HHHHHHhcCCceEEEeccCCCCHHHHHHH
Q 046233 450 --------------EIAEKPYIVAFNKMDLPEA--------YEKWPS----FKEKLQARGIEPFCMSAVKREGTHEVISA 503 (518)
Q Consensus 450 --------------~l~~kPiIVVlNKiDL~~~--------~e~~ee----l~~~l~~~g~~i~~ISAktgeGI~eL~~~ 503 (518)
....+|++||++|||.... .+++.. ++.++-..+...|.+|+|...||+-|..+
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHH
Confidence 1236899999999998531 122222 33444455889999999999999999999
Q ss_pred HHHHH
Q 046233 504 AYQLL 508 (518)
Q Consensus 504 L~e~L 508 (518)
|...+
T Consensus 285 ivhr~ 289 (473)
T KOG3905|consen 285 IVHRS 289 (473)
T ss_pred HHHHh
Confidence 98654
No 343
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.23 E-value=4.1e-06 Score=85.71 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=61.1
Q ss_pred ccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
+..+|++++|+|+.++. +...++.+...+.. .++|+++|+||+||....+. ......+...+.+++++||+++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-----~~ip~iIVlNK~DL~~~~~~-~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-----AGIEPVIVLTKADLLDDEEE-ELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-----cCCCEEEEEEHHHCCChHHH-HHHHHHHHhCCCeEEEEECCCC
Confidence 56799999999998876 54554444433331 46899999999999754221 1222333445789999999999
Q ss_pred CCHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQ 506 (518)
Q Consensus 495 eGI~eL~~~L~e 506 (518)
.|+++|+.+|..
T Consensus 150 ~gi~~L~~~L~~ 161 (287)
T cd01854 150 EGLDELREYLKG 161 (287)
T ss_pred ccHHHHHhhhcc
Confidence 999999988763
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.20 E-value=2.5e-06 Score=80.21 Aligned_cols=54 Identities=28% Similarity=0.430 Sum_probs=43.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
.+++++|.+|+|||||+|+|.+... .+...+++|..... +.++ ..+.++||||+
T Consensus 116 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~--~~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS--PGIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec--CCEEEEECCCC
Confidence 4789999999999999999998764 55778888876544 3333 46899999996
No 345
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=8.5e-06 Score=84.60 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=101.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-----------CC-----CCCceeeeceeeEEEecC-CceEEEEcCCCCcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-----------IA-----NYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGA 402 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-----------Ia-----~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliega 402 (518)
-.+|+-||....|||||..+|+..... |. ...+.|+ +...+.|.. .+.+.-.|+||+-+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITI--n~aHveYeTa~RhYaH~DCPGHAD-- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITI--NAAHVEYETAKRHYAHTDCPGHAD-- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceE--eeeeeeeeccccccccCCCCchHH--
Confidence 358999999999999999999753211 11 1224444 333444432 35788899999755
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH----HHHHH
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP----SFKEK 478 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e----el~~~ 478 (518)
+..+++....+-|..|+||.+++....+.-+.|...-+ ..-..++|.+||.|+.+..+.++ +++++
T Consensus 130 -----YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-----VGV~~ivvfiNKvD~V~d~e~leLVEmE~REl 199 (449)
T KOG0460|consen 130 -----YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-----VGVKHIVVFINKVDLVDDPEMLELVEMEIREL 199 (449)
T ss_pred -----HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-----cCCceEEEEEecccccCCHHHHHHHHHHHHHH
Confidence 44455666678899999999999766666555543322 12355777889999996555443 45566
Q ss_pred HHhc-----CCceEEEecc---CCC-------CHHHHHHHHHHHHHhh
Q 046233 479 LQAR-----GIEPFCMSAV---KRE-------GTHEVISAAYQLLQKN 511 (518)
Q Consensus 479 l~~~-----g~~i~~ISAk---tge-------GI~eL~~~L~e~L~~~ 511 (518)
|... ..|++.=||+ .+. .|.+|++.+-.+++..
T Consensus 200 Lse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 200 LSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred HHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 6655 3578877764 332 2555666655555443
No 346
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.17 E-value=8.5e-06 Score=85.69 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=95.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCC--------------CCceeeeceeeEEEecCC-------------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIAN--------------YPFTTLLPNLGVVSFDYD------------------- 387 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~--------------ypfTTl~p~lg~v~~~~~------------------- 387 (518)
..|+..|..++|||||+-+|+..++.-.+ ...-|-+..++++-++++
T Consensus 118 v~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~ 197 (527)
T COG5258 118 VLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVK 197 (527)
T ss_pred EEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhh
Confidence 47999999999999999999765442111 012222333444433321
Q ss_pred ---ceEEEEcCCCCccccccCCCcchhhhccc--cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 388 ---STMVVADLPGLLEGAHQGFGLGHEFLRHT--ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 388 ---~~l~I~DTPGliegas~~~gLg~~fLr~I--erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
.-+.++||.|+.. +....++.+ +..|..++|+-+.+..+...-+.+--.+. ...|+|+|++|
T Consensus 198 ~aDklVsfVDtvGHEp-------wLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a------~~lPviVvvTK 264 (527)
T COG5258 198 RADKLVSFVDTVGHEP-------WLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA------MELPVIVVVTK 264 (527)
T ss_pred hcccEEEEEecCCccH-------HHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh------hcCCEEEEEEe
Confidence 2478999999755 112222322 46799999999988655444444433333 46899999999
Q ss_pred CCCCCccc---chHHHHHHHHhc-------------------------CCceEEEeccCCCCHHHHHHHHH
Q 046233 463 MDLPEAYE---KWPSFKEKLQAR-------------------------GIEPFCMSAVKREGTHEVISAAY 505 (518)
Q Consensus 463 iDL~~~~e---~~eel~~~l~~~-------------------------g~~i~~ISAktgeGI~eL~~~L~ 505 (518)
+|+..... ..+++...|+.. -.|+|.+|+.+|+|++-|.+.+.
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 99986432 123333333210 13889999999999986655443
No 347
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.8e-06 Score=88.38 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=75.6
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
.+.++|+||+.- |...+|....-.|++++++.+....+..+...-...++. +.-+.++|+-||+||...
T Consensus 126 HVSfVDCPGHDi-------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei----M~LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 126 HVSFVDCPGHDI-------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI----MKLKHIIILQNKIDLIKE 194 (466)
T ss_pred EEEeccCCchHH-------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH----hhhceEEEEechhhhhhH
Confidence 588999999743 333456655567888888877653222221111111111 123678999999999865
Q ss_pred cc---chHHHHHHHHhc---CCceEEEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 469 YE---KWPSFKEKLQAR---GIEPFCMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 469 ~e---~~eel~~~l~~~---g~~i~~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
.+ ..+.+..++... +.+++++||.-++||+-+.++|.+.++..-+
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 43 334455555433 6799999999999999999999998875433
No 348
>PRK12288 GTPase RsgA; Reviewed
Probab=98.15 E-value=1e-05 Score=85.15 Aligned_cols=86 Identities=17% Similarity=0.085 Sum_probs=62.8
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--chHHHHHHHHhcCCceEEEeccC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KWPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l~~~g~~i~~ISAkt 493 (518)
..++|.+++|++.....++..++.+..... ..++|.+||+||+||....+ ....+...+...+++++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 456899999999876656555554433222 24689999999999975432 23344455556688999999999
Q ss_pred CCCHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQ 506 (518)
Q Consensus 494 geGI~eL~~~L~e 506 (518)
+.|+++|+++|..
T Consensus 193 g~GideL~~~L~~ 205 (347)
T PRK12288 193 GEGLEELEAALTG 205 (347)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998865
No 349
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.14 E-value=2.6e-05 Score=85.14 Aligned_cols=161 Identities=17% Similarity=0.069 Sum_probs=93.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec---CCceEEEEcCCCCccccccCCCcchhhhc--c
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFGLGHEFLR--H 415 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~---~~~~l~I~DTPGliegas~~~gLg~~fLr--~ 415 (518)
..|.|+|..++||||||.+|.+... ..+..-+...+..+.-+ +..++.+|-+.|-.... .|....+. .
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~---~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~----~LLk~~lt~~~ 98 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIED---PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHS----DLLKFALTPEN 98 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCC---CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchH----hHhcccCCccc
Confidence 3789999999999999999976432 22333344443333322 12467888776632211 12222121 1
Q ss_pred ccccCceEEEEeCCCCCCH-HHHHHHHHHHH-------------------------hcCC--------------------
Q 046233 416 TERCSALVHVIDGSAEQPE-FEFDAVRLELE-------------------------MFSP-------------------- 449 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~-e~~~~L~~eL~-------------------------~~~~-------------------- 449 (518)
+ .--++|+|+|.+.+-.+ +++..|...|+ .|..
T Consensus 99 l-~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~ 177 (472)
T PF05783_consen 99 L-PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS 177 (472)
T ss_pred c-cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence 2 12578899999986221 11111111111 1100
Q ss_pred ---------------CCCCCCEEEEEeCCCCCCc--------ccchHHH----HHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 450 ---------------EIAEKPYIVAFNKMDLPEA--------YEKWPSF----KEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 450 ---------------~l~~kPiIVVlNKiDL~~~--------~e~~eel----~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
.....|++||++|+|.... ++.++-+ +.++-.+|..+|.+|++...+++-|+.
T Consensus 178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence 0114799999999997531 1222333 333344588999999999999999999
Q ss_pred HHHHHHH
Q 046233 503 AAYQLLQ 509 (518)
Q Consensus 503 ~L~e~L~ 509 (518)
+|...+.
T Consensus 258 yi~h~l~ 264 (472)
T PF05783_consen 258 YILHRLY 264 (472)
T ss_pred HHHHHhc
Confidence 9877664
No 350
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.13 E-value=4.2e-06 Score=78.22 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=41.2
Q ss_pred ceEEEEcCCCCccccccCCC-cchhhhccccccCceEEEEeCCCCCCH-HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFG-LGHEFLRHTERCSALVHVIDGSAEQPE-FEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~g-Lg~~fLr~IerADvlL~VVDaS~~~s~-e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
....++||||..+..+.-.. +....+....+++.+++|+|+...... .....+...+.. --+||+||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--------ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--------ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--------CCEEEEecccC
Confidence 46789999999764332111 112234455678999999998753221 112333344432 23779999996
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1e-05 Score=88.23 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=87.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe--cCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF--DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~--~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
=|++||+||+||||||..|.+...+ .|++-..|-+++ ....++++..+|--+ ++++.-..-|
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~tk------~ti~~i~GPiTvvsgK~RRiTflEcp~Dl----------~~miDvaKIa 134 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFTK------QTIDEIRGPITVVSGKTRRITFLECPSDL----------HQMIDVAKIA 134 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHH------hhhhccCCceEEeecceeEEEEEeChHHH----------HHHHhHHHhh
Confidence 4789999999999999999875321 133333333322 224689999999421 3455555669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccchHHHHHHHHhc-------CCceEEEec
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKWPSFKEKLQAR-------GIEPFCMSA 491 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~eel~~~l~~~-------g~~i~~ISA 491 (518)
|++|++||..-..-.+.++.|.-... ...| ++-|++..||......+...+..|+.+ +..+|.+|.
T Consensus 135 DLVlLlIdgnfGfEMETmEFLnil~~------HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsg 208 (1077)
T COG5192 135 DLVLLLIDGNFGFEMETMEFLNILIS------HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSG 208 (1077)
T ss_pred heeEEEeccccCceehHHHHHHHHhh------cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecc
Confidence 99999999987666666655443322 3455 566999999987665555665555433 678899987
Q ss_pred cC
Q 046233 492 VK 493 (518)
Q Consensus 492 kt 493 (518)
..
T Consensus 209 V~ 210 (1077)
T COG5192 209 VE 210 (1077)
T ss_pred cc
Confidence 64
No 352
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.08 E-value=4e-05 Score=80.43 Aligned_cols=140 Identities=18% Similarity=0.255 Sum_probs=80.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCC----CCCc----eeeeceeeEEEec---CCceEEEEcCCCCccccccCCC--
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIA----NYPF----TTLLPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFG-- 407 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----~ypf----TTl~p~lg~v~~~---~~~~l~I~DTPGliegas~~~g-- 407 (518)
..|.++|..|.|||||+|.|++....-. .... .|+........+. ....++++||||+.+.-.....
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we 103 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWE 103 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHH
Confidence 4788999999999999999998622111 1111 2222222222221 1247999999999874332111
Q ss_pred -----cchh---hhcc---c--------cccCceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 408 -----LGHE---FLRH---T--------ERCSALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 408 -----Lg~~---fLr~---I--------erADvlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+-.+ ++.. + .|.+++||.+-.+.. -...+++.+. .|. ....+|-|+-|+|...
T Consensus 104 ~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk-~ls------~~vNlIPVI~KaD~lT 176 (373)
T COG5019 104 PIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMK-RLS------KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHH-HHh------cccCeeeeeeccccCC
Confidence 1111 1110 1 357999999987653 2333444332 232 2456888999999987
Q ss_pred cccc---hHHHHHHHHhcCCceE
Q 046233 468 AYEK---WPSFKEKLQARGIEPF 487 (518)
Q Consensus 468 ~~e~---~eel~~~l~~~g~~i~ 487 (518)
..+. .+.+++.+...++++|
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCcee
Confidence 6543 2345556666666666
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.07 E-value=8.7e-06 Score=80.46 Aligned_cols=90 Identities=20% Similarity=0.088 Sum_probs=58.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc--CCCCC-CCCceeeeceeeEEEec--CCceEEEEcCCCCccccccCCCcchhhhc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA--QPTIA-NYPFTTLLPNLGVVSFD--YDSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a--k~~Ia-~ypfTTl~p~lg~v~~~--~~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
+.-|+++|.+++|||||+|+|.+. .+.+. ....+|....+....+. .+..+.++||||+....... ......+.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-FEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-hhhhhHHH
Confidence 567999999999999999999998 55443 33455554443333332 24689999999987532211 01112222
Q ss_pred cccc--cCceEEEEeCCC
Q 046233 415 HTER--CSALVHVIDGSA 430 (518)
Q Consensus 415 ~Ier--ADvlL~VVDaS~ 430 (518)
.+.. ++++||.++...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 3333 899999988765
No 354
>PRK13796 GTPase YqeH; Provisional
Probab=98.05 E-value=4.6e-06 Score=88.27 Aligned_cols=55 Identities=36% Similarity=0.485 Sum_probs=42.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC------CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ------PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak------~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
+|.+||.+|||||||||+|.... ..++..|+||+.... +.++ ....++||||+..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~--~~~~l~DTPGi~~ 222 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLD--DGSFLYDTPGIIH 222 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcC--CCcEEEECCCccc
Confidence 78999999999999999998542 235788999986543 3333 2468999999964
No 355
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.04 E-value=3.4e-06 Score=91.31 Aligned_cols=59 Identities=27% Similarity=0.457 Sum_probs=47.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA 402 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega 402 (518)
...||+||+|||||||+||+|.+.+. .++..|+.|.+. .++.+. ..+.|+|+||++-..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHF--QTi~ls--~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHF--QTIFLS--PSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCccee--EEEEcC--CCceecCCCCccccC
Confidence 46899999999999999999998764 678888888754 344444 468999999997543
No 356
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.99 E-value=1.8e-05 Score=83.57 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=58.1
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHH----HHHHhcCC---ceEE
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFK----EKLQARGI---EPFC 488 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~----~~l~~~g~---~i~~ 488 (518)
...++++++|+|+.+... .|..++..+ ...+|+++|+||+|+.......+.+. +.++..++ .++.
T Consensus 61 ~~~~~~Il~VvD~~d~~~-----s~~~~l~~~---~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 61 GDSNALIVYVVDIFDFEG-----SLIPELKRF---VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred ccCCcEEEEEEECcCCCC-----CccHHHHHH---hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 357899999999977542 122333322 13689999999999975433223333 33444555 4899
Q ss_pred EeccCCCCHHHHHHHHHHH
Q 046233 489 MSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~ 507 (518)
+||+++.|+++|++.|.+.
T Consensus 133 vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999765
No 357
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.97 E-value=0.00011 Score=80.93 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=94.4
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe-cCCceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF-DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~-~~~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
+.+..+.++|..++|||.|++++.+....-+....+.....+..+.. +....+.+-|++=. .... +. -+.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~----l~---~ke- 493 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDF----LT---SKE- 493 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-cccc----cc---Ccc-
Confidence 35678999999999999999999986433221111111112222222 22345677776643 1111 10 011
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch--HHHHHHHHhcCC-ceEEEeccC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW--PSFKEKLQARGI-EPFCMSAVK 493 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~--eel~~~l~~~g~-~i~~ISAkt 493 (518)
..||++++|||.+++.++.... .....+-. ....|+++|+.|+|+.+..+.. +. .+...+.++ +.+.+|.+.
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a---~v~~~~~~-~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~ 568 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLA---EVYNKYFD-LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKT 568 (625)
T ss_pred ceeeeEEEecccCCchHHHHHH---HHHHHhhh-ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCC
Confidence 5699999999999887755443 33333332 2679999999999998654321 22 333444444 567777774
Q ss_pred CCCHHHHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQLLQ 509 (518)
Q Consensus 494 geGI~eL~~~L~e~L~ 509 (518)
... .++|..|..+..
T Consensus 569 ~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 569 LSS-NELFIKLATMAQ 583 (625)
T ss_pred CCC-chHHHHHHHhhh
Confidence 323 788888876643
No 358
>PRK13796 GTPase YqeH; Provisional
Probab=97.97 E-value=2.7e-05 Score=82.48 Aligned_cols=89 Identities=22% Similarity=0.223 Sum_probs=60.3
Q ss_pred hhccccccC-ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHH----HHHHhcCC--
Q 046233 412 FLRHTERCS-ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFK----EKLQARGI-- 484 (518)
Q Consensus 412 fLr~IerAD-vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~----~~l~~~g~-- 484 (518)
.++.+..++ ++++|+|+.+... .+..+|..+. .++|+++|+||+||.......+.+. ..++..++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~---~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNG-----SWIPGLHRFV---GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCC-----chhHHHHHHh---CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCc
Confidence 566666666 8999999987432 1233444332 3689999999999975332222222 22333454
Q ss_pred -ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 485 -EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 485 -~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
.++.+||+++.|+++|++.|.+..
T Consensus 134 ~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 134 VDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 689999999999999999997753
No 359
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.95 E-value=4.6e-05 Score=65.92 Aligned_cols=114 Identities=18% Similarity=0.075 Sum_probs=67.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|..++|||+|+.++....... .+ |+ ++.+ +...| ....+.++.
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~--~~--~~-~t~~---------~~~~~------------------~~~~~s~~~ 49 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDY--VP--TV-FTIG---------IDVYD------------------PTSYESFDV 49 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccc--cC--ce-ehhh---------hhhcc------------------ccccCCCCE
Confidence 78999999999999999996543311 11 10 1111 11111 112345788
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
++.|++.....+.... |...+.... ..+.|.++++||+|+.......... ...++.+||+++.|+.
T Consensus 50 ~~~v~~~~~~~s~~~~--~~~~i~~~~--k~dl~~~~~~nk~dl~~~~~~~~~~-------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 50 VLQCWRVDDRDSADNK--NVPEVLVGN--KSDLPILVGGNRDVLEEERQVATEE-------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEEEccCHHHHHHH--hHHHHHhcC--CCCCcEEEEeechhhHhhCcCCHHH-------HHHHHHHhCCCcchhh
Confidence 8888998887665433 333333222 2457889999999985432221111 1245678999999885
No 360
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.93 E-value=6.1e-05 Score=75.22 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=80.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC--------CCCCCceeeeceeeEEEecCC--ceEEEEcCCCCccccccCCC---
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT--------IANYPFTTLLPNLGVVSFDYD--STMVVADLPGLLEGAHQGFG--- 407 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~--------Ia~ypfTTl~p~lg~v~~~~~--~~l~I~DTPGliegas~~~g--- 407 (518)
.+|.+||.+|.|||||+|.|...+.. ...+|-||.-..+..+....+ .+++++||||+.+.......
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 47899999999999999999765321 124454544333333332222 47899999999764322111
Q ss_pred ----cchh---hhc---------cc--cccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 408 ----LGHE---FLR---------HT--ERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 408 ----Lg~~---fLr---------~I--erADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+..+ ||+ ++ -+.+|++|.+-.+... ..-+++.+...-+ -..++-|+-|+|-..-
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-------vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-------VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-------hheeeeeEeecccccH
Confidence 1111 121 11 2578999999887632 2223333332211 2457778899997654
Q ss_pred ccc---hHHHHHHHHhcCCceEEE
Q 046233 469 YEK---WPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 469 ~e~---~eel~~~l~~~g~~i~~I 489 (518)
++. .+.+++.+...++.+++-
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq 223 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQ 223 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccc
Confidence 332 344555555555555543
No 361
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00015 Score=76.55 Aligned_cols=144 Identities=15% Similarity=0.228 Sum_probs=82.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC----C---CCCCceeeeceeeEEEec---CCceEEEEcCCCCccccccCCC---
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT----I---ANYPFTTLLPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFG--- 407 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~----I---a~ypfTTl~p~lg~v~~~---~~~~l~I~DTPGliegas~~~g--- 407 (518)
..+.++|..|.|||||+|.|+..... + ...+-.|+......+.+. ...+++++||||+.+.-.....
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 36789999999999999999876321 0 111111222222222221 1247899999999764322110
Q ss_pred ----cchh---hhc--------ccc--ccCceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc
Q 046233 408 ----LGHE---FLR--------HTE--RCSALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY 469 (518)
Q Consensus 408 ----Lg~~---fLr--------~Ie--rADvlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~ 469 (518)
+-.+ |+. .+. |.+++||.+..+.. -..-++..+.. |. ....+|-|+-|+|.....
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~-l~------~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKK-LS------KKVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHH-Hh------ccccccceeeccccCCHH
Confidence 1111 111 122 78999999998764 23333333222 22 346788899999998765
Q ss_pred cc---hHHHHHHHHhcCCceEEEec
Q 046233 470 EK---WPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 470 e~---~eel~~~l~~~g~~i~~ISA 491 (518)
+. ...+++.+...++++|....
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~ 199 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPT 199 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCC
Confidence 53 23455566666776665543
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.92 E-value=7.7e-05 Score=77.75 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=81.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC----CC---CCCCcee-----e-----eceeeEEEe------------------c
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP----TI---ANYPFTT-----L-----LPNLGVVSF------------------D 385 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~----~I---a~ypfTT-----l-----~p~lg~v~~------------------~ 385 (518)
.-|+|+|++||||||++..|...-. ++ +.-++.. + ...+.++.. .
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~ 194 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA 194 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3588999999999999999865311 11 1001100 0 011111111 1
Q ss_pred CCceEEEEcCCCCccccccCCCcchhhhccc-----cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 046233 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHT-----ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAF 460 (518)
Q Consensus 386 ~~~~l~I~DTPGliegas~~~gLg~~fLr~I-----erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVl 460 (518)
.+..++|+||||.......-..-...+.+.+ ...+-.++|+|++.. ...+......... -.+.-+|+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~------~~~~giIl 266 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEA------VGLTGIIL 266 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhh------CCCCEEEE
Confidence 1347999999997542111000001122211 235678999999853 2233322222221 13457889
Q ss_pred eCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 461 NKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 461 NKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
||+|..... -.+...+...++|+..++ +|+++++|..
T Consensus 267 TKlD~t~~~---G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 267 TKLDGTAKG---GVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred ECCCCCCCc---cHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 999965432 234444555688999998 8888877654
No 363
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.87 E-value=2.3e-05 Score=72.12 Aligned_cols=55 Identities=29% Similarity=0.497 Sum_probs=39.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
..+++++|.+|+|||||+++|.+... .+...+.+|.... .+..+ ..+.+|||||+
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~~--~~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKIT--SKIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEcC--CCEEEEECcCC
Confidence 34789999999999999999997543 3455666665432 22232 47999999995
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=5.9e-05 Score=84.83 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=76.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCC----------------CceeeeceeeEEEe-cCCceEEEEcCCCCccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANY----------------PFTTLLPNLGVVSF-DYDSTMVVADLPGLLEG 401 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~y----------------pfTTl~p~lg~v~~-~~~~~l~I~DTPGlieg 401 (518)
.+..|++|-....|||||...|.....-++.. .+.|... ..+.+ ..+..+.++|+||+.++
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmks--s~is~~~~~~~~nlidspghvdf 85 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKS--SAISLLHKDYLINLIDSPGHVDF 85 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeec--cccccccCceEEEEecCCCccch
Confidence 35689999999999999999998765433211 1122211 11111 12457999999999986
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
.++ ......-||.++++||+...-..+++..+++... .....++|+||+|.
T Consensus 86 ~se-------vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 86 SSE-------VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI------EGLKPILVINKIDR 136 (887)
T ss_pred hhh-------hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH------ccCceEEEEehhhh
Confidence 553 3344456999999999998777777776665443 35667889999993
No 365
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00011 Score=81.97 Aligned_cols=144 Identities=21% Similarity=0.174 Sum_probs=81.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCce------------------------------------eee------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFT------------------------------------TLL------ 376 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfT------------------------------------Tl~------ 376 (518)
...+|++.|..++||||++|++...+.-....--+ ++.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 34589999999999999999997654311110000 010
Q ss_pred -ceeeEEEecCC------ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC
Q 046233 377 -PNLGVVSFDYD------STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSP 449 (518)
Q Consensus 377 -p~lg~v~~~~~------~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~ 449 (518)
+.+-.+.++++ ..+.++|.||+.-... +..-..++...+|++|||+.+.+..+....+. +.....
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid~~cldaDVfVlV~NaEntlt~sek~F----f~~vs~ 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWIDSFCLDADVFVLVVNAENTLTLSEKQF----FHKVSE 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHHHHhhcCCeEEEEecCccHhHHHHHHH----HHHhhc
Confidence 11111222222 2689999999865433 22333456778999999999877544433332 222222
Q ss_pred CCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhc--------CCceEEEecc
Q 046233 450 EIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQAR--------GIEPFCMSAV 492 (518)
Q Consensus 450 ~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~--------g~~i~~ISAk 492 (518)
. ...++|+.||.|....... .+.++.++... .-.++.+||+
T Consensus 260 ~--KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 260 E--KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred c--CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 1 3345667788898755332 23343332221 2368889964
No 366
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.83 E-value=0.00014 Score=74.13 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=59.2
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhcccc-----ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE-----RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~Ie-----rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
+..+.|+||||.......-..-...+.+.+. .++.+++|+|++. ....+.......+.. .+.-+|+|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~------~~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV------GLTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC------CCCEEEEE
Confidence 3578999999975421110000011112221 2788999999974 333444333333211 24678899
Q ss_pred CCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 462 KMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 462 KiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
|+|.....-. +.......++|+..++ +|+++++|..
T Consensus 226 KlDe~~~~G~---~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGGI---ILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCccH---HHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9998654332 3334444578898888 7888877654
No 367
>PRK01889 GTPase RsgA; Reviewed
Probab=97.83 E-value=9.3e-05 Score=78.18 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=55.1
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-chHHHHHHHHhcCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-KWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-~~eel~~~l~~~g~~i~~ISAktg 494 (518)
+.++|.+++|+++...-....++.+...+.. .+.|.+||+||+||....+ ..+.+... ..+.+++.+||+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-----~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-----SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-----cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCC
Confidence 4678999999999643332233333332221 3567799999999975421 11222222 34679999999999
Q ss_pred CCHHHHHHHHH
Q 046233 495 EGTHEVISAAY 505 (518)
Q Consensus 495 eGI~eL~~~L~ 505 (518)
.|+++|..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999998875
No 368
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.81 E-value=0.00014 Score=76.02 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=83.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC--C------------CCC-CCc-----eeeeceeeEEEe----------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP--T------------IAN-YPF-----TTLLPNLGVVSF---------------- 384 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~--~------------Ia~-ypf-----TTl~p~lg~v~~---------------- 384 (518)
+-..|-|+=||||||||+.|..... + |.. -.. ......-|.+-.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 3467889999999999999987643 1 110 000 001111111110
Q ss_pred cCCceEEEEcCCCCccccccCCCcch-hhhccccccCceEEEEeCCCCCCHHH--HHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 385 DYDSTMVVADLPGLLEGAHQGFGLGH-EFLRHTERCSALVHVIDGSAEQPEFE--FDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 385 ~~~~~l~I~DTPGliegas~~~gLg~-~fLr~IerADvlL~VVDaS~~~s~e~--~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
.......++.|-|+-.....-..+.. .-++..-.-|.+|-|||+.+...... .+.....+. ..=+||+|
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia--------~AD~ivlN 153 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA--------FADVIVLN 153 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH--------hCcEEEEe
Confidence 01135778889998665332111111 12223335688999999987433222 123333333 22388999
Q ss_pred CCCCCCcccchHHHHHHHHhc--CCceEEEeccCCCCHHHHH
Q 046233 462 KMDLPEAYEKWPSFKEKLQAR--GIEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 462 KiDL~~~~e~~eel~~~l~~~--g~~i~~ISAktgeGI~eL~ 501 (518)
|+|+....+ ++.+...++.. ..+++.+|. ....+.+++
T Consensus 154 K~Dlv~~~~-l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 154 KTDLVDAEE-LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred cccCCCHHH-HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 999998765 66677777665 357777776 334444333
No 369
>PRK14974 cell division protein FtsY; Provisional
Probab=97.74 E-value=0.00019 Score=75.43 Aligned_cols=99 Identities=17% Similarity=0.100 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhcc---ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRH---TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~---IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
..++|+||+|....... +... ++. ....+.+++|+|+.... ............ -..--+|+||+|
T Consensus 223 ~DvVLIDTaGr~~~~~~---lm~e-L~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~------~~~~giIlTKlD 290 (336)
T PRK14974 223 IDVVLIDTAGRMHTDAN---LMDE-LKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEA------VGIDGVILTKVD 290 (336)
T ss_pred CCEEEEECCCccCCcHH---HHHH-HHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhc------CCCCEEEEeeec
Confidence 46999999997542111 1111 121 23478899999997632 222222222221 124577899999
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHH
Q 046233 465 LPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISA 503 (518)
Q Consensus 465 L~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~ 503 (518)
.....-. +.......+.|+.+++ +|+++++|..+
T Consensus 291 ~~~~~G~---~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 291 ADAKGGA---ALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred CCCCccH---HHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 8654332 3333444578999997 79999877653
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=97.73 E-value=3.5e-05 Score=81.19 Aligned_cols=54 Identities=26% Similarity=0.322 Sum_probs=36.2
Q ss_pred eeeeCCCCCChhHHHHHHhccCC-CCCCCC-------ceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQP-TIANYP-------FTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~yp-------fTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
++|+|.||||||||||+|.+... .++..+ -||....+. .+.. ...|+||||+.+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~--~l~~--~~~liDTPGir~ 269 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLY--HFPH--GGDLIDSPGVRE 269 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEE--EecC--CCEEEECCCCCc
Confidence 78999999999999999997543 222222 245443333 3321 236999999865
No 371
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00015 Score=76.34 Aligned_cols=154 Identities=20% Similarity=0.194 Sum_probs=90.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC----------------CC-----CCCceeee--ceeeEEEecC-----------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT----------------IA-----NYPFTTLL--PNLGVVSFDY----------- 386 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~----------------Ia-----~ypfTTl~--p~lg~v~~~~----------- 386 (518)
.+|+++|-..+|||||+-.|+..... |. ...+.++- ..-.++.|..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 37999999999999999999754321 10 01111110 0111122221
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
..-++++|++|+-...+.. .+-... ...+..++|+.+...-.+..-+.|-..+. .+.|++|+++|+|+.
T Consensus 248 SKlvTfiDLAGh~kY~~TT---i~gLtg--Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A------L~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTT---IHGLTG--YTPHFACLVVSADRGITWTTREHLGLIAA------LNIPFFVLVTKMDLV 316 (591)
T ss_pred cceEEEeecccchhhheee---eeeccc--CCCceEEEEEEcCCCCccccHHHHHHHHH------hCCCeEEEEEeeccc
Confidence 1248999999975422210 000111 13578889999887666555554433332 479999999999998
Q ss_pred Cccc---chHHHHHHHHhc--------------------------CCceEEEeccCCCCHHHHHHHHH
Q 046233 467 EAYE---KWPSFKEKLQAR--------------------------GIEPFCMSAVKREGTHEVISAAY 505 (518)
Q Consensus 467 ~~~e---~~eel~~~l~~~--------------------------g~~i~~ISAktgeGI~eL~~~L~ 505 (518)
.... .++++...+... -.|+|.+|..+|+|++-|...|.
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 7632 233333333321 13789999999999987665553
No 372
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=9.4e-05 Score=81.67 Aligned_cols=119 Identities=24% Similarity=0.258 Sum_probs=84.8
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCC---C---------------CCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPT---I---------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~---I---------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
++.+..|+++-.-.||||||..++...... + .....+|+......+.+. ..++.|+||||+
T Consensus 36 ~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~-~~~iNiIDTPGH 114 (721)
T KOG0465|consen 36 LNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR-DYRINIIDTPGH 114 (721)
T ss_pred hhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec-cceeEEecCCCc
Confidence 346678999999999999999998643211 1 122345555555555555 579999999999
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY 469 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~ 469 (518)
++ +..+..|.++-.|.+|+|+|+...-..+.. ..+..+..| +.|.|..+||||...+.
T Consensus 115 vD-------FT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~ry-----~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 115 VD-------FTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMKRY-----NVPRICFINKMDRMGAS 172 (721)
T ss_pred ee-------EEEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHHhc-----CCCeEEEEehhhhcCCC
Confidence 88 444567777788999999999875443433 344555544 68999999999987653
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=97.67 E-value=4.9e-05 Score=80.23 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=37.7
Q ss_pred eeeeCCCCCChhHHHHHHhccCC-CCCCCCc-------eeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQP-TIANYPF-------TTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypf-------TTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
++|+|.||||||||||+|..... .++..+. ||....+ +.+.. ...|+||||+..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l--~~l~~--g~~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL--FELPN--GGLLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE--EECCC--CcEEEeCCCccc
Confidence 79999999999999999996542 3344444 5554433 33332 237999999865
No 374
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.67 E-value=0.00023 Score=73.99 Aligned_cols=117 Identities=19% Similarity=0.164 Sum_probs=75.3
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC----------CHHHHHHHHHHHHhcCCCCCCCCE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ----------PEFEFDAVRLELEMFSPEIAEKPY 456 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~----------s~e~~~~L~~eL~~~~~~l~~kPi 456 (518)
+..+.+||++|+.. ....|..+++.+++++||+|+++.+ .+.+...+...+-. .+.+.++|+
T Consensus 160 ~~~~~~~DvgGq~~-------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pi 231 (317)
T cd00066 160 NLKFRMFDVGGQRS-------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSI 231 (317)
T ss_pred ceEEEEECCCCCcc-------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCE
Confidence 56899999999844 3355777788999999999999742 22222222222211 244568999
Q ss_pred EEEEeCCCCCCc-----------------ccchHHHHHHHHh----------cCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 457 IVAFNKMDLPEA-----------------YEKWPSFKEKLQA----------RGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 457 IVVlNKiDL~~~-----------------~e~~eel~~~l~~----------~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
+|++||+|+... ....+.....+.. +.+.+..++|..-.++..+|..+.+.+.
T Consensus 232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 999999997531 1112222222221 1334567889888999999998888775
Q ss_pred hh
Q 046233 510 KN 511 (518)
Q Consensus 510 ~~ 511 (518)
..
T Consensus 312 ~~ 313 (317)
T cd00066 312 QN 313 (317)
T ss_pred HH
Confidence 43
No 375
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.63 E-value=0.001 Score=72.85 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=53.7
Q ss_pred eEEEEcCCCCcccccc-----CCCcchhh-hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 389 TMVVADLPGLLEGAHQ-----GFGLGHEF-LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 389 ~l~I~DTPGliegas~-----~~gLg~~f-Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
+++++|+||.|..-.. .+.-.+.+ -.|+++.++||+||--.+-+. .-..+-..+...+| ..+..|+|++|
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA--ERSnVTDLVsq~DP--~GrRTIfVLTK 488 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA--ERSIVTDLVSQMDP--HGRRTIFVLTK 488 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch--hhhhHHHHHHhcCC--CCCeeEEEEee
Confidence 7899999999863221 11112222 235678899999885433222 12223333444444 56889999999
Q ss_pred CCCCCc-ccchHHHHHHHHh
Q 046233 463 MDLPEA-YEKWPSFKEKLQA 481 (518)
Q Consensus 463 iDL~~~-~e~~eel~~~l~~ 481 (518)
+|+.+. ......+++.+..
T Consensus 489 VDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred cchhhhccCCHHHHHHHHhc
Confidence 999865 3345667776653
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.62 E-value=5.9e-05 Score=75.59 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=37.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCC-------CCceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIAN-------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~-------ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
.++++|.+|||||||||+|.+... .++. ..-||....+-.+ . ...|+||||+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~---~~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--H---GGLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--C---CcEEEeCCCccc
Confidence 688999999999999999997532 2221 2235655444332 2 237999999865
No 377
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00021 Score=71.59 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=88.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
++|.|+|.--+||||+-.......+.. .-+.-.|-.+....+.. .-..+.+||.||+....... ..+..-++.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~-sfinf~v~dfPGQ~~~Fd~s----~D~e~iF~~~ 102 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISN-SFINFQVWDFPGQMDFFDPS----FDYEMIFRGV 102 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhh-hhcceEEeecCCccccCCCc----cCHHHHHhcc
Confidence 569999999999999988776543211 11111111111111111 12468999999998743321 2233446779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHH-hcCCCCCCCCEEEEEeCCCCCCcccchH-------HHHHHHHhc-----CCce
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELE-MFSPEIAEKPYIVAFNKMDLPEAYEKWP-------SFKEKLQAR-----GIEP 486 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~-~~~~~l~~kPiIVVlNKiDL~~~~e~~e-------el~~~l~~~-----g~~i 486 (518)
-++|||+|+.+ +..+.+..|...+. .|. -..++.+=|.+.|+|-....-.++ ...+.+... .+.+
T Consensus 103 gALifvIDaQd-dy~eala~L~~~v~rayk-vNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf 180 (347)
T KOG3887|consen 103 GALIFVIDAQD-DYMEALARLHMTVERAYK-VNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSF 180 (347)
T ss_pred CeEEEEEechH-HHHHHHHHHHHHhhheee-cCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEE
Confidence 99999999975 23333333322222 222 224677888899999875433222 222333333 2356
Q ss_pred EEEeccCCCCHHHHHHHHHHH
Q 046233 487 FCMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~ 507 (518)
+.+|-.... |-|.|..+.+.
T Consensus 181 ~LTSIyDHS-IfEAFSkvVQk 200 (347)
T KOG3887|consen 181 YLTSIYDHS-IFEAFSKVVQK 200 (347)
T ss_pred EEeeecchH-HHHHHHHHHHH
Confidence 667766554 66666555443
No 378
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.60 E-value=0.00041 Score=73.01 Aligned_cols=117 Identities=15% Similarity=0.118 Sum_probs=75.3
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC----------CHHHHHHHHHHHHhcCCCCCCCCE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ----------PEFEFDAVRLELEMFSPEIAEKPY 456 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~----------s~e~~~~L~~eL~~~~~~l~~kPi 456 (518)
+..+.+||++|+.. ....|..+++.++++|||+|+++.+ .+.+...+...+-. .+.+.+.|+
T Consensus 183 ~~~~~~~DvgGqr~-------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~-~~~~~~~pi 254 (342)
T smart00275 183 KLFFRMFDVGGQRS-------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN-SRWFANTSI 254 (342)
T ss_pred CeEEEEEecCCchh-------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc-CccccCCcE
Confidence 46789999999743 3345777788899999999999742 22222222222221 345678999
Q ss_pred EEEEeCCCCCCcc----------------cchHHHHHHH----Hh-------cCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 457 IVAFNKMDLPEAY----------------EKWPSFKEKL----QA-------RGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 457 IVVlNKiDL~~~~----------------e~~eel~~~l----~~-------~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
+|++||+|+.... ...+...+++ .. ..+.++.++|..-.++..+|..+...+.
T Consensus 255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 9999999986311 1112222222 11 1234567889999999999998888775
Q ss_pred hh
Q 046233 510 KN 511 (518)
Q Consensus 510 ~~ 511 (518)
..
T Consensus 335 ~~ 336 (342)
T smart00275 335 QR 336 (342)
T ss_pred HH
Confidence 54
No 379
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.59 E-value=0.00041 Score=75.10 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=70.0
Q ss_pred eeeeeCCCCCChhHHHHHHhc------cCCCC-CCCCc-----------eee--eceeeEEEe-c--------------C
Q 046233 342 DVGIVGAPNAGKSTLLSVISA------AQPTI-ANYPF-----------TTL--LPNLGVVSF-D--------------Y 386 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~------ak~~I-a~ypf-----------TTl--~p~lg~v~~-~--------------~ 386 (518)
-|+++|.+||||||++..|.. .++.+ +.-++ ... .|......- + .
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~ 181 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE 181 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999862 22211 11110 000 011111100 0 1
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhc--cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLR--HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr--~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
+..++|+||||..... ..+..++.+ .....+.+++|+|++..... .... +.|.. .-.+--+|+||+|
T Consensus 182 ~~DvViIDTaGr~~~d---~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a----~~F~~--~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQE---DSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQA----KAFKD--SVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcch---HHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHH----HHHHh--ccCCcEEEEECcc
Confidence 3579999999964321 112222222 23346889999998764322 2111 22221 1235678899999
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEe
Q 046233 465 LPEAYEKWPSFKEKLQARGIEPFCMS 490 (518)
Q Consensus 465 L~~~~e~~eel~~~l~~~g~~i~~IS 490 (518)
-....-. ........+.|+.+++
T Consensus 251 ~~argG~---aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 251 GHAKGGG---ALSAVAATKSPIIFIG 273 (429)
T ss_pred CCCCccH---HhhhHHHHCCCeEEEc
Confidence 7643221 2223333455666554
No 380
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.58 E-value=0.00043 Score=72.95 Aligned_cols=152 Identities=22% Similarity=0.190 Sum_probs=85.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC----------------CCCCCCceee-----------------ec---eeeEEEe
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP----------------TIANYPFTTL-----------------LP---NLGVVSF 384 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~----------------~Ia~ypfTTl-----------------~p---~lg~v~~ 384 (518)
++|++||...||||||+-.|+.... .+.+-...+. +| ++..+.+
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 5899999999999999988875321 1111110000 11 1111111
Q ss_pred cC--CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 385 DY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 385 ~~--~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
.. ..-++++|+.|+....... ..-+.-| ..|...+++-+...---...+.|-..|. ...|+++|++|
T Consensus 214 ce~saKviTFIDLAGHEkYLKTT---vFGMTGH--~PDf~MLMiGaNaGIiGmTKEHLgLALa------L~VPVfvVVTK 282 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTT---VFGMTGH--MPDFTMLMIGANAGIIGMTKEHLGLALA------LHVPVFVVVTK 282 (641)
T ss_pred ccccceeEEEEeccchhhhhhee---eeccccC--CCCceEEEecccccceeccHHhhhhhhh------hcCcEEEEEEe
Confidence 10 1258899999976522110 0001112 3677788887765332222333333343 46899999999
Q ss_pred CCCCCcccchHHHHH----HHHhc--------------------------CCceEEEeccCCCCHHHHHHHH
Q 046233 463 MDLPEAYEKWPSFKE----KLQAR--------------------------GIEPFCMSAVKREGTHEVISAA 504 (518)
Q Consensus 463 iDL~~~~e~~eel~~----~l~~~--------------------------g~~i~~ISAktgeGI~eL~~~L 504 (518)
+|+..+. .+++-.. .++.. -+++|.+|..+|.|++-|...|
T Consensus 283 IDMCPAN-iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 283 IDMCPAN-ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred eccCcHH-HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 9998653 2333222 22221 2588999999999998665444
No 381
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.56 E-value=5.4e-05 Score=74.36 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=44.1
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccc---cCceEEEEeCCC-CCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTER---CSALVHVIDGSA-EQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~Ier---ADvlL~VVDaS~-~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
.+.++|+||+|+-... .-...++.+|+.+ --+++|++|+.- -+...-+.-....|... -....|.|=|++|+|
T Consensus 99 dylifDcPGQIELytH-~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM--i~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTH-LPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM--ISLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeec-ChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH--HHhcCcchhhhhHHH
Confidence 6899999999983221 1234556666654 335778887642 11111111111222111 124689999999999
Q ss_pred CCCc
Q 046233 465 LPEA 468 (518)
Q Consensus 465 L~~~ 468 (518)
|...
T Consensus 176 Llk~ 179 (273)
T KOG1534|consen 176 LLKD 179 (273)
T ss_pred Hhhh
Confidence 9865
No 382
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.56 E-value=5e-05 Score=71.87 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=36.7
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCC-C---CCCC----CceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQP-T---IANY----PFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~-~---Ia~y----pfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
.++. ..++|+|.+|||||||||+|..... . ++.. .-||.. ...+.++ ....|+||||+-+
T Consensus 32 ~l~~-k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~--~~l~~l~--~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 32 LLKG-KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTH--RELFPLP--DGGYIIDTPGFRS 99 (161)
T ss_dssp HHTT-SEEEEECSTTSSHHHHHHHHHTSS----S--------------S--EEEEEET--TSEEEECSHHHHT
T ss_pred HhcC-CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCC--eeEEecC--CCcEEEECCCCCc
Confidence 3444 5789999999999999999998632 1 2111 122332 2334443 3578999999854
No 383
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=4.6e-05 Score=80.80 Aligned_cols=128 Identities=24% Similarity=0.208 Sum_probs=84.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC------------------CCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT------------------IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~------------------Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
+.+|+++-.-.|||||...+|..-... +....+.|+....-.+.+. +.++.++||||+.++
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwk-g~rinlidtpghvdf 115 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWK-GHRINLIDTPGHVDF 115 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccc-cceEeeecCCCcceE
Confidence 558899999999999999987532111 1112334443333233333 579999999999873
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEKL 479 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~l 479 (518)
..+.-|.++--|.++.|+|++.....+.+..|++. ...+.|.++.+||||...+. ..++.+.+.+
T Consensus 116 -------~leverclrvldgavav~dasagve~qtltvwrqa------dk~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 116 -------RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA------DKFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred -------EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc------cccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33455666778999999999986555555545442 23578999999999987542 2244555555
Q ss_pred Hh
Q 046233 480 QA 481 (518)
Q Consensus 480 ~~ 481 (518)
..
T Consensus 183 ~a 184 (753)
T KOG0464|consen 183 GA 184 (753)
T ss_pred CC
Confidence 43
No 384
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.52 E-value=7.9e-05 Score=78.87 Aligned_cols=64 Identities=31% Similarity=0.531 Sum_probs=49.2
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
+||.-.+|++||+||+||||+||+|...+. .+++.|+.|. .+..+.++ ..+.|+|.||++-...
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~--smqeV~Ld--k~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTR--SMQEVKLD--KKIRLLDSPGIVPPSI 312 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchh--hhhheecc--CCceeccCCceeecCC
Confidence 355666999999999999999999998765 4566676554 44556654 5899999999986443
No 385
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.52 E-value=4.6e-05 Score=72.35 Aligned_cols=85 Identities=18% Similarity=0.253 Sum_probs=45.6
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
....|+.+.|....... -+....+...-..+.+|.|+|+......... ..+...++ .--+||+||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--------~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA--------FADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC--------T-SEEEEE-GGGH
T ss_pred cCEEEECCccccccchh--hhccccccccccccceeEEeccccccccccchhhhhhcch--------hcCEEEEeccccC
Confidence 36788888886554332 0011112223346889999999763222222 22233332 2238899999998
Q ss_pred CcccchHHHHHHHHhc
Q 046233 467 EAYEKWPSFKEKLQAR 482 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~ 482 (518)
...+.++.+++.++..
T Consensus 155 ~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 155 SDEQKIERVREMIREL 170 (178)
T ss_dssp HHH--HHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH
Confidence 7764456666666654
No 386
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.43 E-value=0.00093 Score=62.00 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=36.0
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
..+.|+||+|... .+...+..||.+|+|.... ..+.+..+.-. +....-++|+||+|
T Consensus 92 ~D~iiIDtaG~~~----------~~~~~~~~Ad~~ivv~tpe---~~D~y~~~k~~-------~~~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ----------SEVDIASMADTTVVVMAPG---AGDDIQAIKAG-------IMEIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh----------hhhhHHHhCCEEEEEECCC---chhHHHHhhhh-------HhhhcCEEEEeCCC
Confidence 4799999999532 2233455689999988765 23333332222 23345689999998
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.43 E-value=0.00048 Score=66.97 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=54.5
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
..++|+||||..........-...+++.+ ..+-+++|++++... +++..+......+. +-=++++|+|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~--~~~~~~~~~~~~~~------~~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEAL-NPDEVHLVLSATMGQ--EDLEQALAFYEAFG------IDGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGG--HHHHHHHHHHHHSS------TCEEEEESTTSSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhc-CCccceEEEecccCh--HHHHHHHHHhhccc------CceEEEEeecCCC
Confidence 46999999997542221100112233333 467789999998642 33333333333221 2356699999764
Q ss_pred cccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 468 AYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 468 ~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
. .-.+...+...+.|+-.+| +|++|++
T Consensus 155 ~---~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 R---LGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp T---THHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred C---cccceeHHHHhCCCeEEEE--CCCChhc
Confidence 4 3345555566677887776 4555543
No 388
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00011 Score=77.80 Aligned_cols=155 Identities=20% Similarity=0.194 Sum_probs=91.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC------------------CCCCC-------------CceeeeceeeEEEecCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP------------------TIANY-------------PFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~------------------~Ia~y-------------pfTTl~p~lg~v~~~~~~ 388 (518)
..++.++|...+||||+=..|....- +.+.| ..-|........... ..
T Consensus 79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte-~~ 157 (501)
T KOG0459|consen 79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE-NK 157 (501)
T ss_pred CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec-ce
Confidence 44789999999999998777643210 11111 112222222222222 46
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHH--HHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDA--VRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~--L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+++|.|+||+-. +..++.....+||+.++|+.+........|+. ...+.........-+..|+++||||-+
T Consensus 158 ~ftiLDApGHk~-------fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 158 RFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 230 (501)
T ss_pred eEEeeccCcccc-------cchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCC
Confidence 899999999744 45567778889999999999854321111110 000111111112456789999999987
Q ss_pred Cc---ccchHHHH----HHHHhc------CCceEEEeccCCCCHHHHHH
Q 046233 467 EA---YEKWPSFK----EKLQAR------GIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 467 ~~---~e~~eel~----~~l~~~------g~~i~~ISAktgeGI~eL~~ 502 (518)
.. .+..+++. .+|... ...++++|..+|.++.+...
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 42 23333333 333322 35789999999999988764
No 389
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.40 E-value=6.8e-05 Score=79.24 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=44.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA 402 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega 402 (518)
-|++||+||+||||+||.|-..+. ++++.|+.|..-.+-.+ -.+|.++|+||+.-..
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL----mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL----MKRIFLIDCPGVVYPS 366 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH----HhceeEecCCCccCCC
Confidence 699999999999999999998776 56888877764332111 2479999999987543
No 390
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.40 E-value=0.00087 Score=70.52 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++-..|.|+-||||||||+.+...
T Consensus 2 ~~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 2 AKIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CccCEEEEEECCCCCHHHHHHHHHhc
Confidence 34566789999999999999999864
No 391
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.38 E-value=0.00023 Score=73.45 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=47.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCC------CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQP------TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH 403 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~------~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas 403 (518)
.-..|-+||.||+|||||||++..... .++.+|+.|.... ..+.+.....+.++||||++....
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~-~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVS-ERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeeh-hheEeccCCceEEecCCCcCCCCC
Confidence 345789999999999999999865422 3578888887543 345555467899999999986544
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.37 E-value=0.00044 Score=72.12 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=69.0
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCC--C--C--CCCCceeee------ceeeEEEecC--------------------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQP--T--I--ANYPFTTLL------PNLGVVSFDY-------------------- 386 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~--~--I--a~ypfTTl~------p~lg~v~~~~-------------------- 386 (518)
.++-.+|.|+-||||||||++|..... + + ..+--..++ ....++.+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 456778999999999999999985421 1 1 010000010 0011122110
Q ss_pred -------CceEEEEcCCCCccccccCCCc-chhhhccccccCceEEEEeCCCCCCH-HHHHHHHHHHHhcCCCCCCCCEE
Q 046233 387 -------DSTMVVADLPGLLEGAHQGFGL-GHEFLRHTERCSALVHVIDGSAEQPE-FEFDAVRLELEMFSPEIAEKPYI 457 (518)
Q Consensus 387 -------~~~l~I~DTPGliegas~~~gL-g~~fLr~IerADvlL~VVDaS~~~s~-e~~~~L~~eL~~~~~~l~~kPiI 457 (518)
.....++.|.|.-+....-..+ ....+...-+.+.+|.|+|+...... .........+. .-=+
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~--------~AD~ 154 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG--------YADR 154 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH--------hCCE
Confidence 1346788888886533211001 01112222346889999999763211 11122223332 1238
Q ss_pred EEEeCCCCCCcccchHHHHHHHHhc
Q 046233 458 VAFNKMDLPEAYEKWPSFKEKLQAR 482 (518)
Q Consensus 458 VVlNKiDL~~~~e~~eel~~~l~~~ 482 (518)
||+||+|+.... +.+.+.++..
T Consensus 155 IvlnK~Dl~~~~---~~~~~~l~~l 176 (318)
T PRK11537 155 ILLTKTDVAGEA---EKLRERLARI 176 (318)
T ss_pred EEEeccccCCHH---HHHHHHHHHh
Confidence 899999998643 4555555544
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.35 E-value=0.00019 Score=73.92 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=36.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCC-------ceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYP-------FTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~yp-------fTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
.++|+|.+|||||||+|+|++... ..+..+ .||....+. .+. ....|+||||+.+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~~--~~~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DLP--GGGLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--EcC--CCcEEEECCCcCc
Confidence 589999999999999999987643 222222 244433332 232 2358999999864
No 394
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.29 E-value=0.0019 Score=60.50 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=46.7
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
..+.|+||||..............+. .....+.+++|+|+... ....+.....++.. + ..-+|+||+|...
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~-~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~-----~-~~~viltk~D~~~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIK-RVVKPDEVLLVVDAMTG--QDAVNQAKAFNEAL-----G-ITGVILTKLDGDA 153 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHH-hhcCCCeEEEEEECCCC--hHHHHHHHHHHhhC-----C-CCEEEEECCcCCC
Confidence 46899999997421000000011111 22348999999998643 23333333332221 1 3567889999875
Q ss_pred cccchHHHHHHHHhcCCceEEE
Q 046233 468 AYEKWPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 468 ~~e~~eel~~~l~~~g~~i~~I 489 (518)
.... +.+.....++|+..+
T Consensus 154 ~~g~---~~~~~~~~~~p~~~~ 172 (173)
T cd03115 154 RGGA---ALSIRAVTGKPIKFI 172 (173)
T ss_pred Ccch---hhhhHHHHCcCeEee
Confidence 4332 233444445665543
No 395
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.28 E-value=0.00022 Score=86.02 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=69.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCC----CceeeeceeeEEEecCCceEEEEcCCCCccccc----cCCCcchh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANY----PFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH----QGFGLGHE 411 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~y----pfTTl~p~lg~v~~~~~~~l~I~DTPGliegas----~~~gLg~~ 411 (518)
++=..+||.+|+||||||... +-.+..... .......+. .+.+=...+.+++||+|..-... ........
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence 344579999999999999987 322222111 100111110 11110123678999999653221 11122334
Q ss_pred hhccc------cccCceEEEEeCCCCC--CH----HHHHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCc
Q 046233 412 FLRHT------ERCSALVHVIDGSAEQ--PE----FEFDAVRLELEMFSPEI-AEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 412 fLr~I------erADvlL~VVDaS~~~--s~----e~~~~L~~eL~~~~~~l-~~kPiIVVlNKiDL~~~ 468 (518)
|+..+ +-.+.||++||+++-. .. .....++..|......+ ...|+.||+||||+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 44433 3479999999997632 11 12233444333222222 37899999999998753
No 396
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.26 E-value=0.0031 Score=59.25 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=56.9
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
...++|+|||+... ......+..||.+++|+..+.. .......+.+.++.+ +.|+.+|+||+|..
T Consensus 92 ~~d~viiDtpp~~~---------~~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-----~~~~~vV~N~~~~~ 156 (179)
T cd03110 92 GAELIIIDGPPGIG---------CPVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-----GIPVGVVINKYDLN 156 (179)
T ss_pred CCCEEEEECcCCCc---------HHHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-----CCCEEEEEeCCCCC
Confidence 45799999997543 1233345679999999998754 555555555555532 46789999999975
Q ss_pred CcccchHHHHHHHHhcCCceEE
Q 046233 467 EAYEKWPSFKEKLQARGIEPFC 488 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i~~ 488 (518)
.. ...++.+.++..+++++.
T Consensus 157 ~~--~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 157 DE--IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred cc--hHHHHHHHHHHcCCCeEE
Confidence 33 234566677776776653
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0019 Score=69.41 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=75.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC----CCC---CCCCce--ee---e-----ceeeEEEe-------------c--CCc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ----PTI---ANYPFT--TL---L-----PNLGVVSF-------------D--YDS 388 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak----~~I---a~ypfT--Tl---~-----p~lg~v~~-------------~--~~~ 388 (518)
..|+|+|++||||||++..|...- .++ ..-++. .. . ..+-++.. . .+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 478999999999999999996421 111 000000 00 0 00000000 0 024
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccc--cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHT--ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~I--erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.++|+||||...... .+..++.+.+ ...+.+++|+|++... .+ +...++.|.. -..-=+|++|+|-.
T Consensus 322 DvVLIDTaGRs~kd~---~lm~EL~~~lk~~~PdevlLVLsATtk~--~d---~~~i~~~F~~---~~idglI~TKLDET 390 (436)
T PRK11889 322 DYILIDTAGKNYRAS---ETVEEMIETMGQVEPDYICLTLSASMKS--KD---MIEIITNFKD---IHIDGIVFTKFDET 390 (436)
T ss_pred CEEEEeCccccCcCH---HHHHHHHHHHhhcCCCeEEEEECCccCh--HH---HHHHHHHhcC---CCCCEEEEEcccCC
Confidence 789999999743211 1112222222 2356778999886432 22 2233444432 12346779999976
Q ss_pred CcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 467 EAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
...- .+...+...++|+..++ +|++|.+
T Consensus 391 ~k~G---~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 391 ASSG---ELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred CCcc---HHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 5432 34455555677887775 4665544
No 398
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0019 Score=74.36 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=75.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CC--CCceeeec--------------eeeE-EE-e-c-----------CCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-AN--YPFTTLLP--------------NLGV-VS-F-D-----------YDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~--ypfTTl~p--------------~lg~-v~-~-~-----------~~~~l 390 (518)
-|+|||+.||||||++..|....... .. ....|.+. ..++ +. . + .+..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 47899999999999999997532100 00 00001000 0110 00 0 0 12479
Q ss_pred EEEcCCCCccccccCCCcchh--hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 391 VVADLPGLLEGAHQGFGLGHE--FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~--fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+|+||||....... +... .+......+-+++|+|++.. ..+ +...++.|.......+-=+|++|+|-...
T Consensus 267 VLIDTAGRs~~d~~---l~eel~~l~~~~~p~e~~LVLsAt~~--~~~---l~~i~~~f~~~~~~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRN---VSEQIAMLCGVGRPVRRLLLLNAASH--GDT---LNEVVHAYRHGAGEDVDGCIITKLDEATH 338 (767)
T ss_pred EEEeCCCCCccCHH---HHHHHHHHhccCCCCeEEEEECCCCc--HHH---HHHHHHHHhhcccCCCCEEEEeccCCCCC
Confidence 99999996432111 1111 11122335567899998752 223 33333444321111234577999997654
Q ss_pred ccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 469 YEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 469 ~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
. -.+.......++++..++ +|++|
T Consensus 339 ~---G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 L---GPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred c---cHHHHHHHHHCCCeEEEe--cCCCC
Confidence 3 334455556678888885 56666
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0015 Score=69.64 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=73.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCC--CCCceeeece------------------eeEEEec----------CCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIA--NYPFTTLLPN------------------LGVVSFD----------YDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia--~ypfTTl~p~------------------lg~v~~~----------~~~~l 390 (518)
-++|+|++||||||++..|...-. ... ...+.|.+.. +..+... .+..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 588999999999999999975311 000 0011121111 0011100 13479
Q ss_pred EEEcCCCCccccccCCCcchh--hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcC--CCCC-CCCEEEEEeCCCC
Q 046233 391 VVADLPGLLEGAHQGFGLGHE--FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFS--PEIA-EKPYIVAFNKMDL 465 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~--fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~--~~l~-~kPiIVVlNKiDL 465 (518)
+|+||+|....... +... .+.....+.-.++|++++... ..+..+........ +... ...-=+|++|.|-
T Consensus 219 VLIDTaG~~~~d~~---l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 219 VLIDTIGMSQRDRT---VSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred EEEcCCCCCcccHH---HHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 99999997532111 1111 122223344568999988632 22221111111110 0000 0123577899997
Q ss_pred CCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 466 PEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 466 ~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
... .-.+...+...++++..++ +|++|.
T Consensus 294 t~~---~G~~l~~~~~~~lPi~yvt--~Gq~VP 321 (374)
T PRK14722 294 ASN---LGGVLDTVIRYKLPVHYVS--TGQKVP 321 (374)
T ss_pred CCC---ccHHHHHHHHHCcCeEEEe--cCCCCC
Confidence 643 3345555556677887775 444443
No 400
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0026 Score=68.89 Aligned_cols=143 Identities=17% Similarity=0.175 Sum_probs=74.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CC--CCCCceeeece--------------ee--EEE-e-----------cCCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TI--ANYPFTTLLPN--------------LG--VVS-F-----------DYDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~I--a~ypfTTl~p~--------------lg--~v~-~-----------~~~~~l 390 (518)
.|+|+|++||||||++..|...-. .. ....+.+.++. .+ +.. . -....+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~Dl 302 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDV 302 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCCE
Confidence 588999999999999888754211 00 00011111110 00 000 0 012479
Q ss_pred EEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc
Q 046233 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e 470 (518)
+|+||||..............+++......-+++|++++.. ..++. ..+..|.. -.+--+|+||+|-...
T Consensus 303 VlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~---~~~~~f~~---~~~~~vI~TKlDet~~-- 372 (424)
T PRK05703 303 ILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLK---DIYKHFSR---LPLDGLIFTKLDETSS-- 372 (424)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHH---HHHHHhCC---CCCCEEEEeccccccc--
Confidence 99999997432111101112233321123456788887642 22333 33333331 1123688999997543
Q ss_pred chHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 471 KWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 471 ~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.-.+...+...++++..++ +|.+|
T Consensus 373 -~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 373 -LGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred -ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 3346666667788888876 56665
No 401
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.18 E-value=0.00046 Score=70.73 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=36.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CC-------CCCceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IA-------NYPFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia-------~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
..++++|.+|||||||+|+|++.... .+ ....||.... .+.+. ....++||||+.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~--~~~~~--~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE--LFPLP--GGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE--EEEcC--CCCEEEECCCCCc
Confidence 46899999999999999999976432 11 1122344332 23332 1347999999855
No 402
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.0004 Score=69.33 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=43.7
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccC---ceEEEEeCCC-CCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCS---ALVHVIDGSA-EQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerAD---vlL~VVDaS~-~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
.+.++|+|||.+-.... +.....++.+++.+ ++|.++|+-- .++-.-+..+...|...- ....|.|=|+.|+|
T Consensus 98 ~Y~lFDcPGQVELft~h-~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl--~melphVNvlSK~D 174 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHH-DSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATML--HMELPHVNVLSKAD 174 (290)
T ss_pred cEEEEeCCCcEEEEecc-chHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHH--hhcccchhhhhHhH
Confidence 68999999998743221 22334445555444 4555666532 223333333333332111 24689999999999
Q ss_pred CCCcc
Q 046233 465 LPEAY 469 (518)
Q Consensus 465 L~~~~ 469 (518)
+....
T Consensus 175 l~~~y 179 (290)
T KOG1533|consen 175 LLKKY 179 (290)
T ss_pred HHHhh
Confidence 97543
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.11 E-value=0.0029 Score=68.81 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=48.9
Q ss_pred eEEEEcCCCCccccccCCCcchh--hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHE--FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~--fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.++|+||||...... .+..+ .+..+..+|.+++|+|++... ..+. ..+.|...+ ...-+|+||+|-.
T Consensus 177 DvVIIDTAGr~~~d~---~lm~El~~l~~~~~pdevlLVvda~~gq--~av~----~a~~F~~~l--~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHALEE---DLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKN----QAKAFHEAV--GIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccchH---HHHHHHHHHHHHhcccceeEEEeccccH--HHHH----HHHHHHhcC--CCCEEEEecccCC
Confidence 789999999643111 11111 122244689999999997642 2222 223332211 1346788999975
Q ss_pred CcccchHHHHHHHHhcCCceEEEec
Q 046233 467 EAYEKWPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i~~ISA 491 (518)
..-- .+.......+.|+.+++.
T Consensus 246 a~~G---~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 246 AKGG---GALSAVAETGAPIKFIGT 267 (437)
T ss_pred Cccc---HHHHHHHHHCcCEEEEec
Confidence 4332 233344445677777754
No 404
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.09 E-value=0.0036 Score=68.82 Aligned_cols=142 Identities=13% Similarity=0.150 Sum_probs=75.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC------CCCCCCceeeece--------------ee--EEEec------------CC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP------TIANYPFTTLLPN--------------LG--VVSFD------------YD 387 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~------~Ia~ypfTTl~p~--------------lg--~v~~~------------~~ 387 (518)
-++|||.+||||||++..|..... ++. ..+.++. .+ ..... .+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~---LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVA---LLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEE---EEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 488999999999999999975321 111 1111110 00 00000 12
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
..++++||+|....... ......++.......-.++|+|++... ..+.+.++.|.. ...--+|+||+|-..
T Consensus 335 ~d~VLIDTaGr~~~d~~-~~e~~~~l~~~~~p~e~~LVLdAt~~~-----~~l~~i~~~f~~---~~~~g~IlTKlDet~ 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRM-VSEQIAMLHGAGAPVKRLLLLNATSHG-----DTLNEVVQAYRG---PGLAGCILTKLDEAA 405 (484)
T ss_pred CCeEEeCCCCcChhhHH-HHHHHHHHhccCCCCeeEEEEeCCCcH-----HHHHHHHHHhcc---CCCCEEEEeCCCCcc
Confidence 36899999995432110 000011222221122367888987532 233444444443 223456789999764
Q ss_pred cccchHHHHHHHHhcCCceEEEeccCCCCH-HHH
Q 046233 468 AYEKWPSFKEKLQARGIEPFCMSAVKREGT-HEV 500 (518)
Q Consensus 468 ~~e~~eel~~~l~~~g~~i~~ISAktgeGI-~eL 500 (518)
. .-.+...+...++++.+++ +|++| ++|
T Consensus 406 ~---~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 406 S---LGGALDVVIRYKLPLHYVS--NGQRVPEDL 434 (484)
T ss_pred c---chHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence 3 2345555556678888885 56777 443
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0037 Score=69.32 Aligned_cols=137 Identities=21% Similarity=0.288 Sum_probs=75.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC------CCCCCCCceeeec--------------eeeE--EEec------------C
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ------PTIANYPFTTLLP--------------NLGV--VSFD------------Y 386 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak------~~Ia~ypfTTl~p--------------~lg~--v~~~------------~ 386 (518)
..|+|+|.+|+||||++..|...- .++. +.+.++ .+++ .... .
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVa---LIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVA---LVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceE---EEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 368999999999999999986421 1110 111111 0111 1100 1
Q ss_pred CceEEEEcCCCCccccccCCCcch--hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGH--EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~--~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
+..++|+||||....... +.. .++.... ....++|+++.. ...++..+ ++.|.. ..+.-+|+||+|
T Consensus 428 ~~DLVLIDTaG~s~~D~~---l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~ei---i~~f~~---~~~~gvILTKlD 495 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRA---LAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEV---VRRFAH---AKPQGVVLTKLD 495 (559)
T ss_pred cCCEEEecCCCcchhhHH---HHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHH---HHHHHh---hCCeEEEEecCc
Confidence 357999999997532111 111 1222222 235677888764 23333333 333322 246789999999
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 465 LPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 465 L~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.... +-.+...+...++++..++ +|+.|
T Consensus 496 Et~~---lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 496 ETGR---FGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred Cccc---hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 7543 3455566666678888876 56666
No 406
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.01 E-value=0.00069 Score=69.96 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=34.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-C---CCC----CCceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-T---IAN----YPFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~---Ia~----ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
-.+|+|.+|||||||+|+|..... + |+. -.-||.... .+.++ ..=.|+||||+-+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~--l~~l~--~gG~iiDTPGf~~ 228 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVE--LFPLP--GGGWIIDTPGFRS 228 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEE--EEEcC--CCCEEEeCCCCCc
Confidence 478999999999999999986422 1 211 123333222 23332 2347999999854
No 407
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.97 E-value=0.0013 Score=51.91 Aligned_cols=48 Identities=31% Similarity=0.399 Sum_probs=28.4
Q ss_pred hhccccccCceEEEEeCCCC--CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 412 FLRHTERCSALVHVIDGSAE--QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 412 fLr~IerADvlL~VVDaS~~--~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
.++|+ .++++|++|+|.. -+.++-..|..+++.. ..++|+++|+||+|
T Consensus 9 AL~hL--~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~---F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHL--ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL---FPNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT---SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH---TTTS-EEEEE--TT
T ss_pred HHHhh--cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH---cCCCCEEEEEeccC
Confidence 45666 6899999999974 3444444455566532 24899999999998
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0078 Score=64.58 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=53.1
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+..++|+||+|..........-...++..+....-.++|+|++.. ..++. ..+..|.. -.+-=++++|.|-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~---~~~~~~~~---~~~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK---EIFHQFSP---FSYKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH---HHHHHhcC---CCCCEEEEEeccCC
Confidence 357999999997532110000011223322222257899999874 22222 33444431 12446789999976
Q ss_pred CcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 467 EAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
...- .+...+...++|+..++ +|++|
T Consensus 326 ~~~G---~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 326 TCVG---NLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred Ccch---HHHHHHHHHCCCEEEEe--CCCCC
Confidence 5432 34445555567877775 56777
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0055 Score=66.34 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=74.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccC------CCCCCCCceeeec--------------eeeE--EEec------------CC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ------PTIANYPFTTLLP--------------NLGV--VSFD------------YD 387 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak------~~Ia~ypfTTl~p--------------~lg~--v~~~------------~~ 387 (518)
.|+|||.+||||||++..|.+.. ..++ ..+.+. .+++ .... .+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~---~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVA---LLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEE---EEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 69999999999999999887531 1110 001000 0010 0000 12
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccc---cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHT---ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~I---erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
..+.++||+|....... + ...+..+ ....-.++|+|++.. ..+ +...+..|.. -..-=+|++|.|
T Consensus 270 ~d~VLIDTaGrsqrd~~---~-~~~l~~l~~~~~~~~~~LVl~at~~--~~~---~~~~~~~f~~---~~~~~~I~TKlD 337 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQM---L-AEQIAMLSQCGTQVKHLLLLNATSS--GDT---LDEVISAYQG---HGIHGCIITKVD 337 (420)
T ss_pred CCEEEecCCCCCcchHH---H-HHHHHHHhccCCCceEEEEEcCCCC--HHH---HHHHHHHhcC---CCCCEEEEEeee
Confidence 36899999997532111 1 1122222 223457789998753 222 3344444432 123467789999
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 465 LPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 465 L~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
-.... -.+...+...++++..++ +|.+|
T Consensus 338 Et~~~---G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 338 EAASL---GIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred CCCCc---cHHHHHHHHhCCCEEEEE--CCCCc
Confidence 76542 345555556677888775 56666
No 410
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.93 E-value=0.0031 Score=69.28 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=97.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
++++||...+|||+|+.++..........|-... ....++......-+.+.|-.|.-+ ......+|+
T Consensus 32 k~givg~~~sgktalvhr~ltgty~~~e~~e~~~-~kkE~vv~gqs~lLlirdeg~~~~------------aQft~wvda 98 (749)
T KOG0705|consen 32 KLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGR-FKKEVVVDGQSHLLLIRDEGGHPD------------AQFCQWVDA 98 (749)
T ss_pred heeeeecccCCceeeeeeeccceeccccCCcCcc-ceeeEEeeccceEeeeecccCCch------------hhhhhhccc
Confidence 7899999999999999997654322211110000 011112222223455556655211 222455899
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-cc--ch-HHHHHHHH-hcCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA-YE--KW-PSFKEKLQ-ARGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~-~e--~~-eel~~~l~-~~g~~i~~ISAktgeG 496 (518)
+|||+...+..+++..+.+...|..|.. ....|+++|+++ |+... .. .. .+-...+. ...+.+|+.+|.+|.+
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~-r~~i~l~lvgtq-d~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln 176 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRN-ISDLPLILVGTQ-DHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN 176 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccc-cccchHHhhcCc-chhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence 9999999999999988888777765543 456788888777 33321 11 11 11222222 2356889999999999
Q ss_pred HHHHHHHHHHHHHhhhH
Q 046233 497 THEVISAAYQLLQKNKE 513 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~~ 513 (518)
+...|..+...+...++
T Consensus 177 v~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 177 VERVFQEVAQKIVQLRK 193 (749)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999887765543
No 411
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0059 Score=65.40 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=73.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccC----CCC---CCCCcee--------eeceee--EEEe-c--------------CCce
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ----PTI---ANYPFTT--------LLPNLG--VVSF-D--------------YDST 389 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak----~~I---a~ypfTT--------l~p~lg--~v~~-~--------------~~~~ 389 (518)
-|+|+|+.||||||++..|...- ..+ ..-++.. .....+ +... + .+..
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D 287 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVD 287 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCC
Confidence 58899999999999999987421 111 1001100 000011 0000 0 1357
Q ss_pred EEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc
Q 046233 390 MVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY 469 (518)
Q Consensus 390 l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~ 469 (518)
++|+||||..........-...+... ...+.+++|+++.. ...+ +...+..|.. -.+--+|+||.|-....
T Consensus 288 ~VLIDTAGr~~~d~~~l~EL~~l~~~-~~p~~~~LVLsag~--~~~d---~~~i~~~f~~---l~i~glI~TKLDET~~~ 358 (407)
T PRK12726 288 HILIDTVGRNYLAEESVSEISAYTDV-VHPDLTCFTFSSGM--KSAD---VMTILPKLAE---IPIDGFIITKMDETTRI 358 (407)
T ss_pred EEEEECCCCCccCHHHHHHHHHHhhc-cCCceEEEECCCcc--cHHH---HHHHHHhcCc---CCCCEEEEEcccCCCCc
Confidence 89999999743111100000112222 23466677776643 2222 2233333431 12346779999976432
Q ss_pred cchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 470 EKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 470 e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
-.+.......+.|+..+| +|++|.+
T Consensus 359 ---G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 359 ---GDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred ---cHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 334455555677887776 4566654
No 412
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.90 E-value=0.001 Score=72.49 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=60.7
Q ss_pred CCCcchhhhccccccCceEEEEeCCCCCCH--HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSAEQPE--FEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR 482 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~~~s~--e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~ 482 (518)
+-.+.++.+|-++++|+||.+||+.++-.+ .+++....+. ...+..++++||+||..... ...+.+.+...
T Consensus 161 NLE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~------d~~K~~~LLvNKaDLl~~~q-r~aWa~YF~~~ 233 (562)
T KOG1424|consen 161 NLEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEV------DPSKANVLLVNKADLLPPEQ-RVAWAEYFRQN 233 (562)
T ss_pred CHHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcc------ccccceEEEEehhhcCCHHH-HHHHHHHHHhc
Confidence 334677888999999999999999987543 2222222222 13478899999999997754 35677788888
Q ss_pred CCceEEEeccC
Q 046233 483 GIEPFCMSAVK 493 (518)
Q Consensus 483 g~~i~~ISAkt 493 (518)
+++++..||..
T Consensus 234 ni~~vf~SA~~ 244 (562)
T KOG1424|consen 234 NIPVVFFSALA 244 (562)
T ss_pred CceEEEEeccc
Confidence 89999999976
No 413
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.86 E-value=0.0082 Score=61.40 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=76.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC----CCC---C--CCCc------eeeeceee--EEE-e--------------cCCc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ----PTI---A--NYPF------TTLLPNLG--VVS-F--------------DYDS 388 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak----~~I---a--~ypf------TTl~p~lg--~v~-~--------------~~~~ 388 (518)
.+++|+|.+++||||++..|...- ..+ . .+.. .+.....+ +.. . ..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 479999999999999999886531 111 0 0000 00000000 000 0 0134
Q ss_pred eEEEEcCCCCccccccCCCcchhhhcc--ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRH--TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~--IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.+.|+||||...... .+..++... ....+-+++|+|++... .+ +...++.|.. -.+-=++++|.|-.
T Consensus 156 D~ViIDt~Gr~~~~~---~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d---~~~~~~~f~~---~~~~~~I~TKlDet 224 (270)
T PRK06731 156 DYILIDTAGKNYRAS---ETVEEMIETMGQVEPDYICLTLSASMKS--KD---MIEIITNFKD---IHIDGIVFTKFDET 224 (270)
T ss_pred CEEEEECCCCCcCCH---HHHHHHHHHHhhhCCCeEEEEEcCccCH--HH---HHHHHHHhCC---CCCCEEEEEeecCC
Confidence 789999999753211 122222221 12346689999987531 12 2334445543 23446779999976
Q ss_pred CcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 467 EAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
...- .+.......+.|+..++ +|+++.
T Consensus 225 ~~~G---~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 225 ASSG---ELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred CCcc---HHHHHHHHHCcCEEEEe--CCCCCC
Confidence 5432 34445555677887775 566655
No 414
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.85 E-value=0.0024 Score=60.81 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=35.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR 482 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~ 482 (518)
|++++|+|+..+.....- .+.+.+. .. ..++|+|+|+||+|+..... ...+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~-~i~~~~~-l~--~~~kp~IlVlNK~DL~~~~~-l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCP-QVEEAVL-QA--GGNKKLVLVLNKIDLVPKEN-VEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCH-HHHHHHH-hc--cCCCCEEEEEehhhcCCHHH-HHHHHHHHHhh
Confidence 789999999875332221 2222211 10 13589999999999976533 44455555444
No 415
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.85 E-value=0.0049 Score=63.76 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=61.2
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktg 494 (518)
+...|-+|+|+.+.+++.-. ..|.+.|-... ..++.-+||+||+||....+.. ++....+...+++++.+||+++
T Consensus 77 v~n~d~~iiIvs~~~P~~~~--~~ldR~Lv~ae--~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~ 152 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNT--NLLDRYLVLAE--AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNG 152 (301)
T ss_pred ccccceEEEEEeccCCCCCH--HHHHHHHHHHH--HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCc
Confidence 34477788888888765432 22333333221 2456677789999999765544 3566677778999999999999
Q ss_pred CCHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQ 506 (518)
Q Consensus 495 eGI~eL~~~L~e 506 (518)
.++++|..++..
T Consensus 153 ~~~~~l~~~l~~ 164 (301)
T COG1162 153 DGLEELAELLAG 164 (301)
T ss_pred ccHHHHHHHhcC
Confidence 999999988753
No 416
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.0072 Score=65.40 Aligned_cols=140 Identities=15% Similarity=0.150 Sum_probs=73.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccC-----CCCCCCCceeeec--------------eee--EEEe-----------cCCce
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ-----PTIANYPFTTLLP--------------NLG--VVSF-----------DYDST 389 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak-----~~Ia~ypfTTl~p--------------~lg--~v~~-----------~~~~~ 389 (518)
-|+|+|.+||||||++..|.... ..+. ..+.++ ..+ .... ..+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~---Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVS---LYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEE---EecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 47899999999999999997421 0110 000000 000 0100 12357
Q ss_pred EEEEcCCCCccccccCCCcchhhhcccc--ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 390 MVVADLPGLLEGAHQGFGLGHEFLRHTE--RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 390 l~I~DTPGliegas~~~gLg~~fLr~Ie--rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
++|+||||..........-...+++.+. ...-.++|+|++... .+ +...+..|.. -.+-=+|++|.|-..
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~---~~~~~~~f~~---~~~~glIlTKLDEt~ 373 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HH---TLTVLKAYES---LNYRRILLTKLDEAD 373 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HH---HHHHHHHhcC---CCCCEEEEEcccCCC
Confidence 8999999975322211111122333321 133578899988642 12 2333344421 123467799999764
Q ss_pred cccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 468 AYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 468 ~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.. -.+.......+.|+..++ .|++|
T Consensus 374 ~~---G~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 374 FL---GSFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred Cc---cHHHHHHHHHCCCEEEEe--cCCCC
Confidence 33 234455555677887775 34444
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.74 E-value=0.01 Score=63.73 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=73.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC--C-CCCCCceeeece-ee-----------------EEEec----------CCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP--T-IANYPFTTLLPN-LG-----------------VVSFD----------YDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~--~-Ia~ypfTTl~p~-lg-----------------~v~~~----------~~~~l 390 (518)
-|+|||++||||||-|..|...-. . -....+.|++.. +| ++.-. .+..+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 589999999999999998865322 0 001112233211 00 00000 12379
Q ss_pred EEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc
Q 046233 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e 470 (518)
+++||.|.-........=...|.... ...-+.+|++++.. ..++. ..+..|.. . ..-=++++|+|-...
T Consensus 285 ILVDTaGrs~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K--~~dlk---ei~~~f~~--~-~i~~~I~TKlDET~s-- 353 (407)
T COG1419 285 ILVDTAGRSQYDKEKIEELKELIDVS-HSIEVYLVLSATTK--YEDLK---EIIKQFSL--F-PIDGLIFTKLDETTS-- 353 (407)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHhcc-ccceEEEEEecCcc--hHHHH---HHHHHhcc--C-CcceeEEEcccccCc--
Confidence 99999996431111000011222222 23445567777653 23333 34444432 1 122566899997644
Q ss_pred chHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 471 KWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 471 ~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+-.+...+...+.|+-.++ .|.+|.
T Consensus 354 -~G~~~s~~~e~~~PV~YvT--~GQ~VP 378 (407)
T COG1419 354 -LGNLFSLMYETRLPVSYVT--NGQRVP 378 (407)
T ss_pred -hhHHHHHHHHhCCCeEEEe--CCCCCC
Confidence 3345555666667777765 565554
No 418
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0037 Score=68.10 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=75.8
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCCCC-----CCCCc-----------eeeeceeeEEEec--------------
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQPTI-----ANYPF-----------TTLLPNLGVVSFD-------------- 385 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-----a~ypf-----------TTl~p~lg~v~~~-------------- 385 (518)
.-+.+.++.+|-....|||||...|...-.-+ ....| .|+..+.-.+.+.
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 34567788889999999999999986532211 11122 2222211111110
Q ss_pred -CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 386 -YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 386 -~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
.+.-+.++|.||+.++.++ ....++-+|..+.|+|+-+.-..+.-..|.+.+. ..+.-++|+||+|
T Consensus 95 ~~~FLiNLIDSPGHVDFSSE-------VTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~------ERIkPvlv~NK~D 161 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSE-------VTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA------ERIKPVLVMNKMD 161 (842)
T ss_pred CcceeEEeccCCCcccchhh-------hhheeEeccCcEEEEEccCceEechHHHHHHHHH------hhccceEEeehhh
Confidence 0124789999999885543 4556677999999999988777666666666665 2333466789999
Q ss_pred CC
Q 046233 465 LP 466 (518)
Q Consensus 465 L~ 466 (518)
..
T Consensus 162 RA 163 (842)
T KOG0469|consen 162 RA 163 (842)
T ss_pred HH
Confidence 64
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=96.63 E-value=0.0095 Score=64.78 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=45.6
Q ss_pred ceEEEEcCCCCccccccCCCcchhh--hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEF--LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~f--Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
..++|+||||....... +.... +..+-..+-+++|+|+... ...+... +.|...+ ...-+|+||+|-
T Consensus 184 ~DvVIIDTaGrl~~d~~---lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a----~~F~~~~--~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEE---LMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTA----KAFNEAL--GLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCcccCHH---HHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHH----HHHHhhC--CCCEEEEeCccC
Confidence 46899999996431111 11111 1122346778999998642 1222222 2222111 124567899996
Q ss_pred CCcccchHHHHHHHHhcCCceEEEec
Q 046233 466 PEAYEKWPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 466 ~~~~e~~eel~~~l~~~g~~i~~ISA 491 (518)
....-. +.......++|+..++.
T Consensus 253 ~~rgG~---alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 253 DARGGA---ALSIRAVTGKPIKFIGT 275 (433)
T ss_pred cccccH---HHHHHHHHCcCEEEEeC
Confidence 543322 33333444677776654
No 420
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.56 E-value=0.0035 Score=66.75 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=56.2
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceE
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPF 487 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~ 487 (518)
+-..|.+.++.+|+||.|+|+.+|......+.=...++. ..++..|+|+||+||+.. +.++.+...|+..+..++
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~----~gnKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv~ 210 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA----HGNKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTVA 210 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc----cCCceEEEEeehhccCCH-HHHHHHHHHHHhhCCcce
Confidence 345567778999999999999997654333221122221 145899999999999976 557788888888776666
Q ss_pred EEeccC
Q 046233 488 CMSAVK 493 (518)
Q Consensus 488 ~ISAkt 493 (518)
+.++..
T Consensus 211 fkast~ 216 (435)
T KOG2484|consen 211 FKASTQ 216 (435)
T ss_pred eecccc
Confidence 655443
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.54 E-value=0.013 Score=47.90 Aligned_cols=72 Identities=24% Similarity=0.191 Sum_probs=46.2
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCce
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSAL 422 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvl 422 (518)
+++.|.+|+||||+...|...-.. ..+. ++-++ .+.++|+|+....... + .......++.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~---------v~~~~---d~iivD~~~~~~~~~~---~---~~~~~~~~~~v 62 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKR---------VLLID---DYVLIDTPPGLGLLVL---L---CLLALLAADLV 62 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCe---------EEEEC---CEEEEeCCCCccchhh---h---hhhhhhhCCEE
Confidence 578899999999999998765221 1111 11112 6899999987542110 0 13345668999
Q ss_pred EEEEeCCCCCC
Q 046233 423 VHVIDGSAEQP 433 (518)
Q Consensus 423 L~VVDaS~~~s 433 (518)
+++++......
T Consensus 63 i~v~~~~~~~~ 73 (99)
T cd01983 63 IIVTTPEALAV 73 (99)
T ss_pred EEecCCchhhH
Confidence 99998876543
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.50 E-value=0.016 Score=62.87 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=47.1
Q ss_pred ceEEEEcCCCCccccccCCCcchhh--hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEF--LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~f--Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
..++|+||||....... +...+ +.++-..+-+++|+|+... ........ .|...+ ...=+|+||+|-
T Consensus 183 ~DvVIIDTaGr~~~d~~---l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~----~f~~~v--~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEE---LMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAK----TFNERL--GLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCccccCHH---HHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHH----HHHhhC--CCCEEEEeCccC
Confidence 46899999996431111 11111 1223357888999998743 22222222 221111 234667999996
Q ss_pred CCcccchHHHHHHHHhcCCceEEEec
Q 046233 466 PEAYEKWPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 466 ~~~~e~~eel~~~l~~~g~~i~~ISA 491 (518)
....-. +.......++|+.+++.
T Consensus 252 ~~~~G~---~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 252 DARGGA---ALSVRSVTGKPIKFIGV 274 (428)
T ss_pred cccccH---HHHHHHHHCcCEEEEeC
Confidence 543332 33344445677777654
No 423
>PRK13695 putative NTPase; Provisional
Probab=96.47 E-value=0.02 Score=53.81 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+|+|+|.+|+|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999997643
No 424
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.38 E-value=0.014 Score=49.84 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=44.9
Q ss_pred eeeeC-CCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 343 VGIVG-APNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 343 V~LVG-~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
|+++| ..|+||||+...|...-.. ... .+-.+..+....+.|+|+|+... ......+..||.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~-------~vl~~d~d~~~d~viiD~p~~~~---------~~~~~~l~~ad~ 64 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGK-------RVLLIDLDPQYDYIIIDTPPSLG---------LLTRNALAAADL 64 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCC-------cEEEEeCCCCCCEEEEeCcCCCC---------HHHHHHHHHCCE
Confidence 45666 6789999998887653211 111 12223333335789999998643 223344666999
Q ss_pred eEEEEeCCC
Q 046233 422 LVHVIDGSA 430 (518)
Q Consensus 422 lL~VVDaS~ 430 (518)
++++++.+.
T Consensus 65 viv~~~~~~ 73 (104)
T cd02042 65 VLIPVQPSP 73 (104)
T ss_pred EEEeccCCH
Confidence 999998865
No 425
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.36 E-value=0.005 Score=53.78 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.5
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
|.|.|+||+|||||++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999985
No 426
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.0099 Score=60.91 Aligned_cols=141 Identities=17% Similarity=0.173 Sum_probs=77.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC----CCCCceeeeceeeEEEe-cCCceEEEEcCCCCccccccCCCc------
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI----ANYPFTTLLPNLGVVSF-DYDSTMVVADLPGLLEGAHQGFGL------ 408 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----a~ypfTTl~p~lg~v~~-~~~~~l~I~DTPGliegas~~~gL------ 408 (518)
-.+|..||..|.|||||+..|.+.+... ..+|...+..+...+.- +....++|+||.|+.+...+...+
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdy 121 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDY 121 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHH
Confidence 3578999999999999999999875532 12222222222111110 112478999999987643322211
Q ss_pred -chhhh---------------ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch
Q 046233 409 -GHEFL---------------RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW 472 (518)
Q Consensus 409 -g~~fL---------------r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ 472 (518)
-.+|- -|=.+.++++|.|..+.. ++..++.+ .++.++ ....+|-|+-|.|.....+..
T Consensus 122 idaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLv--tmk~Ld---skVNIIPvIAKaDtisK~eL~ 195 (406)
T KOG3859|consen 122 IDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLV--TMKKLD---SKVNIIPVIAKADTISKEELK 195 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHH--HHHHHh---hhhhhHHHHHHhhhhhHHHHH
Confidence 01111 122467899999988753 33333322 122222 245567788899987654421
Q ss_pred ---HHHHHHHHhcCCce
Q 046233 473 ---PSFKEKLQARGIEP 486 (518)
Q Consensus 473 ---eel~~~l~~~g~~i 486 (518)
..+...|...++.+
T Consensus 196 ~FK~kimsEL~sngv~I 212 (406)
T KOG3859|consen 196 RFKIKIMSELVSNGVQI 212 (406)
T ss_pred HHHHHHHHHHHhcCcee
Confidence 23344444444444
No 427
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.32 E-value=0.0084 Score=62.68 Aligned_cols=102 Identities=25% Similarity=0.374 Sum_probs=69.4
Q ss_pred EEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc
Q 046233 391 VVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e 470 (518)
.+-+.||+...+. ..+.+.+..+|+++.|+|+.++.....- .+..+ ...+|.++|+||+||.....
T Consensus 13 ~i~~~~g~~~k~~------~~~~~~~~~~d~vvevvDar~P~~s~~~-----~l~~~---v~~k~~i~vlNK~DL~~~~~ 78 (322)
T COG1161 13 KIQWFPGHMKKAK------RQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERI---VKEKPKLLVLNKADLAPKEV 78 (322)
T ss_pred cccCCCCchHHHH------HHHHHhcccCCEEEEEEeccccccccCc-----cHHHH---HccCCcEEEEehhhcCCHHH
Confidence 3445588754322 3455567889999999999987543321 12221 13567799999999987654
Q ss_pred chHHHHHHHHhc-CCceEEEeccCCCCHHHHHHHHHHH
Q 046233 471 KWPSFKEKLQAR-GIEPFCMSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 471 ~~eel~~~l~~~-g~~i~~ISAktgeGI~eL~~~L~e~ 507 (518)
.+.+.+.+... +...+.+|++.+.+...+...+...
T Consensus 79 -~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 79 -TKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred -HHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHH
Confidence 55666666665 6778999999998888887655443
No 428
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.31 E-value=0.0071 Score=72.43 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=67.2
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCC--CCCceeeeceeeEEEecCCceEEEEcCCCCccccc----cCCCcchhhh---
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIA--NYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH----QGFGLGHEFL--- 413 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia--~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas----~~~gLg~~fL--- 413 (518)
-.+||+||+||||++...--..|-.. ....... +....+..-....-+++||.|-....+ .++.....|+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~-~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAG-PGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccC-CCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 56999999999999986543322110 1111111 111112221234688999999754322 1111222221
Q ss_pred ---ccccccCceEEEEeCCCC---CCHHH---HHHHHHHHHhcCCCC-CCCCEEEEEeCCCCCCc
Q 046233 414 ---RHTERCSALVHVIDGSAE---QPEFE---FDAVRLELEMFSPEI-AEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 414 ---r~IerADvlL~VVDaS~~---~s~e~---~~~L~~eL~~~~~~l-~~kPiIVVlNKiDL~~~ 468 (518)
|..+-.+.||+.+|+++- +..+. ...|+.-|+.....+ ...|+.|++||+|+...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 223457899999998762 22222 233433333322222 36899999999999853
No 429
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.09 E-value=0.096 Score=56.76 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=79.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC--C----------------CC-CCCCceeeec----eee-EEEecC--CceEEEEcC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ--P----------------TI-ANYPFTTLLP----NLG-VVSFDY--DSTMVVADL 395 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak--~----------------~I-a~ypfTTl~p----~lg-~v~~~~--~~~l~I~DT 395 (518)
-|++||+.-+||||||.++...- | +- +.....|..| +.. .+.+++ ..++.++|+
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDC 98 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDC 98 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEee
Confidence 58999999999999999986421 1 11 1122223333 222 233332 357899999
Q ss_pred CCCcc-ccccC------CCcchhhhcc---------------cc--ccCceEEEEeCCCC-----CCHHHHHHHHHHHHh
Q 046233 396 PGLLE-GAHQG------FGLGHEFLRH---------------TE--RCSALVHVIDGSAE-----QPEFEFDAVRLELEM 446 (518)
Q Consensus 396 PGlie-gas~~------~gLg~~fLr~---------------Ie--rADvlL~VVDaS~~-----~s~e~~~~L~~eL~~ 446 (518)
-|+.- +|.-. +-...-|..+ |. .+=.+|+--|.|-. +..+.-+....+|+.
T Consensus 99 VGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~ 178 (492)
T PF09547_consen 99 VGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKE 178 (492)
T ss_pred cceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHH
Confidence 99853 22110 0011112111 11 23344444455421 222333456667774
Q ss_pred cCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEEeccC
Q 046233 447 FSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCMSAVK 493 (518)
Q Consensus 447 ~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~ISAkt 493 (518)
.++|++|++|=.+-... + ...+.+.+.. .+++++++++..
T Consensus 179 -----igKPFvillNs~~P~s~-e-t~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 179 -----IGKPFVILLNSTKPYSE-E-TQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred -----hCCCEEEEEeCCCCCCH-H-HHHHHHHHHHHhCCcEEEeehHH
Confidence 36999999998874332 2 3445555543 488999998753
No 430
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.02 E-value=0.015 Score=62.02 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=61.3
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCce
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEP 486 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i 486 (518)
+..++++-|..+|++|.|+|+.++.-. .-..+...|+.- ...+.+|+|+|||||+..... ..+...|... ..-.
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGT-rc~~ve~ylkke---~phKHli~vLNKvDLVPtwvt-~~Wv~~lSkeyPTiA 277 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGT-RCKHVEEYLKKE---KPHKHLIYVLNKVDLVPTWVT-AKWVRHLSKEYPTIA 277 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCccc-ccHHHHHHHhhc---CCcceeEEEeeccccccHHHH-HHHHHHHhhhCccee
Confidence 455667778899999999999986321 122333344422 246889999999999876432 2233333322 2223
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
|-.|-.+..|--.|+..|.++...+
T Consensus 278 fHAsi~nsfGKgalI~llRQf~kLh 302 (572)
T KOG2423|consen 278 FHASINNSFGKGALIQLLRQFAKLH 302 (572)
T ss_pred eehhhcCccchhHHHHHHHHHHhhc
Confidence 4445556677777777777665544
No 431
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.86 E-value=0.024 Score=57.63 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-++|+|+.|||||||+++|++-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999984
No 432
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.82 E-value=0.03 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
..+.++|.+|+|||+|++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999753
No 433
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.80 E-value=0.029 Score=56.19 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhc-cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLR-HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr-~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
..++|+||.|.-. .+.. .+.++|++|.=+-.+..+..+..+.+....+........+|.-|++|++.-.
T Consensus 84 ~d~VlvDleG~as----------~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 84 FDFVLVDLEGGAS----------ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA 153 (231)
T ss_pred CCEEEEeCCCCCc----------hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc
Confidence 3689999999532 1222 2567998888766665554444444333222222223468999999999743
Q ss_pred CcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 467 EAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
........+.+.++ .+++|.+.-....-+.+++.
T Consensus 154 ~~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 154 RLTRAQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred hhhHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22222223334444 36777776665555555444
No 434
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.78 E-value=0.037 Score=48.20 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=56.3
Q ss_pred CCCCCChhHHHHHHhccCCCCCCCCceee--eceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceEE
Q 046233 347 GAPNAGKSTLLSVISAAQPTIANYPFTTL--LPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVH 424 (518)
Q Consensus 347 G~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl--~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~ 424 (518)
+..|+||||+...|..+-.....+...-+ ++.. ...+.|+|+|+... ......+..||.+++
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~-------~~D~IIiDtpp~~~---------~~~~~~l~~aD~vlv 70 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF-------GDDYVVVDLGRSLD---------EVSLAALDQADRVFL 70 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC-------CCCEEEEeCCCCcC---------HHHHHHHHHcCeEEE
Confidence 46789999988887654221111111111 1111 22689999998643 223334567999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 425 VIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 425 VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
|++.+.. +......+...++..... ....+.+|+|+
T Consensus 71 vv~~~~~-s~~~~~~~~~~l~~~~~~-~~~~~~lVvNr 106 (106)
T cd03111 71 VTQQDLP-SIRNAKRLLELLRVLDYS-LPAKIELVLNR 106 (106)
T ss_pred EecCChH-HHHHHHHHHHHHHHcCCC-CcCceEEEecC
Confidence 9987653 444455555555543321 13467788885
No 435
>PRK01889 GTPase RsgA; Reviewed
Probab=95.70 E-value=0.0091 Score=63.23 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.5
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++.--.++|+|.+|+|||||+|.|++..
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhc
Confidence 34333479999999999999999999754
No 436
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.68 E-value=0.15 Score=47.03 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=42.3
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
.++|+|+|+... ......+..||.+|+|++.+.. .......+.+.++.. ......+|+|++|...
T Consensus 64 d~viiD~p~~~~---------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~----~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIE---------RGFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL----GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCc---------HHHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc----CCceEEEEEeCCcccc
Confidence 699999998543 1233345679999999988754 444444455555432 2245778999998653
No 437
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.65 E-value=0.024 Score=51.66 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=57.8
Q ss_pred eeCCCCCChhHHHHHHhccCCCCC-CCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceE
Q 046233 345 IVGAPNAGKSTLLSVISAAQPTIA-NYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALV 423 (518)
Q Consensus 345 LVG~pNAGKSTLLn~Ls~ak~~Ia-~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL 423 (518)
.-+.+|+||||+-..+...-.... ..-....++....+ ...++|+|+|+... ......+..||.++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----~yd~VIiD~p~~~~---------~~~~~~l~~aD~vv 71 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----DYDYIIIDTGAGIS---------DNVLDFFLAADEVI 71 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----CCCEEEEECCCCCC---------HHHHHHHHhCCeEE
Confidence 446789999999777654311000 00001111111111 14689999998543 22333456699999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 424 HVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 424 ~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+|++.+.. +........+++... ....++.+|+|+++..
T Consensus 72 iv~~~~~~-s~~~~~~~l~~l~~~---~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 72 VVTTPEPT-SITDAYALIKKLAKQ---LRVLNFRVVVNRAESP 110 (139)
T ss_pred EEcCCChh-HHHHHHHHHHHHHHh---cCCCCEEEEEeCCCCH
Confidence 99998753 333333333344322 1345788999999743
No 438
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.50 E-value=0.1 Score=55.29 Aligned_cols=130 Identities=17% Similarity=0.226 Sum_probs=78.9
Q ss_pred eceeeEEEec---CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCH--H--HHHHHHHHHHhc-
Q 046233 376 LPNLGVVSFD---YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE--F--EFDAVRLELEMF- 447 (518)
Q Consensus 376 ~p~lg~v~~~---~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~--e--~~~~L~~eL~~~- 447 (518)
.++.|++.+. .+..+.+.|++||..- ...|...++.++++|||+++|.-+.. + ....+.+-+++|
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRse-------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~ 252 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSE-------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFE 252 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHH-------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHH
Confidence 4556665432 1468999999998542 23456677889999999999873211 0 111122222222
Q ss_pred ----CCCCCCCCEEEEEeCCCCCCcc----------------cchHHHHHHHH----h----c--CCceEEEeccCCCCH
Q 046233 448 ----SPEIAEKPYIVAFNKMDLPEAY----------------EKWPSFKEKLQ----A----R--GIEPFCMSAVKREGT 497 (518)
Q Consensus 448 ----~~~l~~kPiIVVlNKiDL~~~~----------------e~~eel~~~l~----~----~--g~~i~~ISAktgeGI 497 (518)
.+-..+.++|+.+||.||.... ...++....+. . . .+-+..+.|..-.+|
T Consensus 253 sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv 332 (354)
T KOG0082|consen 253 SICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNV 332 (354)
T ss_pred HHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHH
Confidence 2345678999999999986421 11122222221 1 1 233455688888999
Q ss_pred HHHHHHHHHHHHhhh
Q 046233 498 HEVISAAYQLLQKNK 512 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~ 512 (518)
+.+|+.+.+.+....
T Consensus 333 ~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 333 QFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988776543
No 439
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.88 E-value=0.025 Score=53.28 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=31.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
.-|+++|++|+|||||+.+|...-. .....++++..+. ..+.+ |+||-
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~--------~~g~~V~~iK~~~-~~~~~-d~~g~ 49 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS--------ARGLRVAVIKHDH-HDFDI-DTPGK 49 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEEEecC-Ccccc-cCccc
Confidence 3589999999999999999997421 1222346666542 33333 77774
No 440
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.82 E-value=0.035 Score=59.15 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC----------CHHHHHHHHHHHHhcCCCCCCCC
Q 046233 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ----------PEFEFDAVRLELEMFSPEIAEKP 455 (518)
Q Consensus 386 ~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~----------s~e~~~~L~~eL~~~~~~l~~kP 455 (518)
....+.++|+.|+.. -...|+.+++.+++||||+++++-+ ...+.-.+...+.. .+.+.+.|
T Consensus 234 ~~~~~~~~DvGGqr~-------eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~-~~~~~~~~ 305 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRS-------ERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN-NPWFKNTP 305 (389)
T ss_dssp TTEEEEEEEETSSGG-------GGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT-SGGGTTSE
T ss_pred cccccceecCCCCch-------hhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh-CcccccCc
Confidence 356899999999843 2356888888999999999998522 12222222222221 23446799
Q ss_pred EEEEEeCCCCCCc-----c--------------cchHHHHHHHHhc------------CCceEEEeccCCCCHHHHHHHH
Q 046233 456 YIVAFNKMDLPEA-----Y--------------EKWPSFKEKLQAR------------GIEPFCMSAVKREGTHEVISAA 504 (518)
Q Consensus 456 iIVVlNKiDL~~~-----~--------------e~~eel~~~l~~~------------g~~i~~ISAktgeGI~eL~~~L 504 (518)
+||++||+|+... . ...+...+++... .+.+..++|..-.++..+|..+
T Consensus 306 iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v 385 (389)
T PF00503_consen 306 IILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAV 385 (389)
T ss_dssp EEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHH
T ss_pred eEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHh
Confidence 9999999997521 0 1223333333221 1234577888888888888877
Q ss_pred HHHH
Q 046233 505 YQLL 508 (518)
Q Consensus 505 ~e~L 508 (518)
.+.+
T Consensus 386 ~~~i 389 (389)
T PF00503_consen 386 KDII 389 (389)
T ss_dssp HHHH
T ss_pred cCcC
Confidence 7643
No 441
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=1.1 Score=42.99 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=22.1
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+...+|++.|+||+|||||+..+...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHH
Confidence 34568999999999999999998753
No 442
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.1 Score=53.85 Aligned_cols=40 Identities=23% Similarity=0.475 Sum_probs=30.1
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCC
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLP 396 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTP 396 (518)
-++.|.+|+|||||||.+.+- +.|..|.+.++. -+++|+-
T Consensus 27 TAlFG~SGsGKTslin~IaGL-----------~rPdeG~I~lng---r~L~Ds~ 66 (352)
T COG4148 27 TALFGPSGSGKTSLINMIAGL-----------TRPDEGRIELNG---RVLVDAE 66 (352)
T ss_pred EEEecCCCCChhhHHHHHhcc-----------CCccccEEEECC---EEeeccc
Confidence 579999999999999999984 346666776662 4566654
No 443
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.45 E-value=0.026 Score=49.18 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.|+||||||.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.44 E-value=0.036 Score=53.43 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=31.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVV 382 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v 382 (518)
-|+|+|++|||||||+++|....+.+ ...+.||..|..+.+
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~ 47 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE 47 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC
Confidence 37899999999999999998875533 334667777766543
No 445
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.44 E-value=0.04 Score=50.31 Aligned_cols=50 Identities=24% Similarity=0.188 Sum_probs=31.3
Q ss_pred eeeeCCCCCChhHHHHHHhccCCC--CCCCCceeeeceeeEEEecCCceEEEEcC
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPT--IANYPFTTLLPNLGVVSFDYDSTMVVADL 395 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~--Ia~ypfTTl~p~lg~v~~~~~~~l~I~DT 395 (518)
|+|+|++|+|||||++.|....+. ....+.||..|..+.+ .+..+.++|.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~---~g~~~~~v~~ 53 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEV---DGVDYHFVSK 53 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCcc---CCceeEEeCH
Confidence 689999999999999999976331 1223345555544432 1334555553
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.33 E-value=0.021 Score=50.86 Aligned_cols=30 Identities=43% Similarity=0.526 Sum_probs=24.2
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.--.++|+|..|+|||||++.|++..
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 334444478999999999999999999863
No 447
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.24 E-value=0.26 Score=49.65 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=30.0
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
++.+|.+|.|+|.|.. +....+.+.+.-. .+.-+++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~-sl~taeri~~L~~----elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYK-SLRTAERIKELAE----ELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHH-HHHHHHHHHHHHH----HhCCceEEEEEeeccch
Confidence 4569999999999863 3333333332222 22248999999999854
No 448
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.20 E-value=0.049 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+-++|+|++|+|||||+.+|...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 45899999999999999999875
No 449
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.09 E-value=0.047 Score=51.10 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=27.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGV 381 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~ 381 (518)
-|+|+|++|||||||++.|....+.+ .....+|..|..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE 43 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence 47899999999999999999865432 22234455554443
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.05 E-value=0.034 Score=56.11 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-|+|||++|||||||++.+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 451
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.92 E-value=0.036 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
|.++|+||||||||+..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999864
No 452
>PRK08118 topology modulation protein; Reviewed
Probab=93.83 E-value=0.043 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+|.|+|.+|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 453
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.77 E-value=0.86 Score=46.31 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCceEEEeccCCCCHHHHHHHHHH
Q 046233 474 SFKEKLQARGIEPFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 474 el~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e 506 (518)
++.+.+...++.++.+|.+...-...+++++..
T Consensus 194 ~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~ 226 (300)
T PHA02530 194 ELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ 226 (300)
T ss_pred HHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH
Confidence 445556666889999999988777777776643
No 454
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.77 E-value=0.049 Score=54.92 Aligned_cols=31 Identities=42% Similarity=0.620 Sum_probs=26.2
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.+++..--.|+|||..|||||||++.|++.
T Consensus 46 isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi 76 (249)
T COG1134 46 ISFEIYKGERVGIIGHNGAGKSTLLKLIAGI 76 (249)
T ss_pred ceEEEeCCCEEEEECCCCCcHHHHHHHHhCc
Confidence 4455555668999999999999999999986
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.1 Score=55.76 Aligned_cols=89 Identities=19% Similarity=0.222 Sum_probs=50.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC----CC----CC----C--------CceeeeceeeEEEec---------------C
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP----TI----AN----Y--------PFTTLLPNLGVVSFD---------------Y 386 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~----~I----a~----y--------pfTTl~p~lg~v~~~---------------~ 386 (518)
-|.+||..|+||||.+..|..... +. ++ - ...+..|.++..... .
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence 588999999999999988753211 00 00 0 001112333321110 1
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhc--cccccCceEEEEeCCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLR--HTERCSALVHVIDGSAEQP 433 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr--~IerADvlL~VVDaS~~~s 433 (518)
...++|+||.|-. ++..+|-.+.+. ..-..|-+|||+|++-...
T Consensus 183 ~fdvIIvDTSGRh---~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 183 NFDVIIVDTSGRH---KQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred CCcEEEEeCCCch---hhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 3479999999953 233334433332 1234799999999987543
No 456
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.74 E-value=0.2 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=20.0
Q ss_pred eceeeeeeCCCCCChhHHHHHHhc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
....|.+||..|+||||..-.|..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~ 122 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAK 122 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHH
Confidence 345789999999999999888754
No 457
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=93.67 E-value=0.2 Score=52.06 Aligned_cols=26 Identities=35% Similarity=0.346 Sum_probs=21.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..++--.+.|+-|||||||+|.+...
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHcc
Confidence 44566679999999999999999754
No 458
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.66 E-value=0.037 Score=53.70 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=30.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVS 383 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~ 383 (518)
-++|.|++|||||||+++|.... .+ -+...||..|..|.+.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~ 47 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVD 47 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcC
Confidence 47899999999999999999876 32 2334667777666543
No 459
>PRK07261 topology modulation protein; Provisional
Probab=93.60 E-value=0.05 Score=51.47 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 460
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.57 E-value=0.085 Score=48.38 Aligned_cols=30 Identities=40% Similarity=0.595 Sum_probs=24.0
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.--.++|+|..|+|||||++.|++..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 334444468999999999999999999863
No 461
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.56 E-value=0.056 Score=54.44 Aligned_cols=30 Identities=40% Similarity=0.585 Sum_probs=24.2
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
+.+++..---|++||.+||||||||+.|.+
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 344444444699999999999999999987
No 462
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.37 E-value=0.063 Score=43.18 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.4
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
|++.|.+++||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 463
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.32 E-value=0.044 Score=50.75 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=18.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999975
No 464
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=93.30 E-value=0.25 Score=54.27 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.3
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-+|+|..|||||||++.|.+.
T Consensus 33 HaLLGENGAGKSTLm~iL~G~ 53 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGL 53 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCc
Confidence 479999999999999999985
No 465
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.12 E-value=0.3 Score=50.82 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=62.4
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccc-----------------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG----------------- 401 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg----------------- 401 (518)
.++.+.|||.+|.|||++++++....+...+... .. ..+.++.+|.--..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-~~------------~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-ER------------IPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-cc------------ccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 3568999999999999999999987764322111 11 13444444432110
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCC---CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAE---QPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~---~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
......+....+..++.+.+=++|||=-+. .+...-+...+.|+.+.. ....|+|.|+++
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N-eL~ipiV~vGt~ 189 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN-ELQIPIVGVGTR 189 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh-ccCCCeEEeccH
Confidence 000001222233446678888899996541 223333444455554433 346899999875
No 466
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.10 E-value=0.064 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|++|||||||+++|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.09 E-value=0.076 Score=45.25 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+.|+|++|+||||++..|...-
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 58899999999999999998764
No 468
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.054 Score=52.28 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=24.4
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.- .++|+|..|+|||||++.|++..
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444 78999999999999999999863
No 469
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=92.99 E-value=0.96 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=19.1
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
++|.|++|+||||.++.|+..
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999875
No 470
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.99 E-value=0.058 Score=52.25 Aligned_cols=30 Identities=37% Similarity=0.537 Sum_probs=24.2
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+..--.++|+|..|||||||++.|++..
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 334444478999999999999999999864
No 471
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.97 E-value=0.077 Score=51.63 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=24.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeec
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLP 377 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p 377 (518)
-|+|+|.+|||||||+++|....+.. -..+.||..+
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~ 51 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPK 51 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCC
Confidence 47899999999999999998654322 2233445443
No 472
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.95 E-value=0.061 Score=53.76 Aligned_cols=30 Identities=40% Similarity=0.571 Sum_probs=23.9
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.++++.---|+++|++|||||||+|.|.+-
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344444446999999999999999999875
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.94 E-value=0.07 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999775
No 474
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.94 E-value=0.06 Score=51.85 Aligned_cols=29 Identities=38% Similarity=0.408 Sum_probs=23.5
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++..--.++|+|..|||||||++.|++..
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 33333468999999999999999999864
No 475
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.92 E-value=0.06 Score=52.13 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=24.2
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+..--.++|+|..|||||||++.|++..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444468999999999999999999864
No 476
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.92 E-value=0.085 Score=42.38 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.2
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..+|.|..++|||||+.++.-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998643
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.91 E-value=0.081 Score=50.48 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=25.1
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.+.++.-..++|+|.+|||||||+++|++.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3344555567999999999999999999975
No 478
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.91 E-value=0.085 Score=54.28 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=27.8
Q ss_pred hhhhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 331 MWLELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 331 ~~l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..+.+++..-..|+++|..||||||+|..|++-
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence 345666666678999999999999999999985
No 479
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.91 E-value=0.064 Score=51.41 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=24.8
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+++..--.++|+|..|+|||||++.|++..
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444444479999999999999999999863
No 480
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.88 E-value=0.069 Score=46.35 Aligned_cols=21 Identities=33% Similarity=0.707 Sum_probs=19.4
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
|+|.|.+|||||||.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 481
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.061 Score=52.83 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=24.1
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++..--.++|+|..|||||||++.|++..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333334468999999999999999999864
No 482
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.83 E-value=0.019 Score=56.52 Aligned_cols=21 Identities=52% Similarity=0.722 Sum_probs=18.5
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-+++|+.|||||||++.+++-
T Consensus 30 Ts~IGPNGAGKSTLLS~~sRL 50 (252)
T COG4604 30 TSIIGPNGAGKSTLLSMMSRL 50 (252)
T ss_pred eEEECCCCccHHHHHHHHHHh
Confidence 469999999999999988764
No 483
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.83 E-value=0.071 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.|+++|+.|+|||||+..|.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 484
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.82 E-value=0.51 Score=49.75 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=54.2
Q ss_pred ceEEEEcCCCCccccccCCCcchhhh---ccccccCc-----eEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEE
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFL---RHTERCSA-----LVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIV 458 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fL---r~IerADv-----lL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIV 458 (518)
..+.|+||.|-.. ....|..++- |-+...+. +++|+|++.. +...+.+...+.+. --=+
T Consensus 222 ~DvvliDTAGRLh---nk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~---------l~Gi 289 (340)
T COG0552 222 IDVVLIDTAGRLH---NKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG---------LDGI 289 (340)
T ss_pred CCEEEEeCccccc---CchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC---------CceE
Confidence 4799999999643 2222333322 22333333 7888899874 34444443332221 1246
Q ss_pred EEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 459 AFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 459 VlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
+++|+|-...--.+-.+. ...++|+..+- -|+++++|..
T Consensus 290 IlTKlDgtAKGG~il~I~---~~l~~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 290 ILTKLDGTAKGGIILSIA---YELGIPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred EEEecccCCCcceeeeHH---HHhCCCEEEEe--CCCChhhccc
Confidence 789999654333333333 33457888774 4677777654
No 485
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.78 E-value=0.068 Score=51.75 Aligned_cols=32 Identities=41% Similarity=0.595 Sum_probs=27.1
Q ss_pred hhhhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 332 WLELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 332 ~l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+.+++.. -.++|+|..|+|||||++.|.+..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45566666 789999999999999999999864
No 486
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.77 E-value=0.067 Score=51.65 Aligned_cols=30 Identities=30% Similarity=0.394 Sum_probs=24.2
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.--.++|+|..|||||||++.|++..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444468999999999999999999864
No 487
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.75 E-value=0.066 Score=51.47 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.1
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++.--.++|+|..|||||||++.|++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334444468999999999999999999864
No 488
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.72 E-value=0.069 Score=51.59 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=24.6
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+++..--.++|+|..|||||||++.|++..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444469999999999999999999863
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.71 E-value=0.077 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.5
Q ss_pred eeeeCCCCCChhHHHHHHhcc
Q 046233 343 VGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~a 363 (518)
|+|+|.+|||||||.++|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999875
No 490
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.71 E-value=0.069 Score=51.78 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=24.8
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+++..--.++|+|..|||||||++.|.+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444579999999999999999999864
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.71 E-value=0.09 Score=50.33 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=27.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGV 381 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~ 381 (518)
-|+|+|++|||||||++.|.+..+.+ .....+|..|..+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE 47 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC
Confidence 48999999999999999998864321 12223454454443
No 492
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.70 E-value=0.068 Score=50.78 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=23.5
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+..--.++|+|..|||||||++.|++..
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33333468999999999999999999863
No 493
>PRK06217 hypothetical protein; Validated
Probab=92.63 E-value=0.088 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+|+|+|.+|||||||..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999865
No 494
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=0.073 Score=51.77 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=24.9
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++|+|..|||||||++.|++..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444468999999999999999999863
No 495
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.62 E-value=0.084 Score=50.68 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+|.|+|.|||||||+-..|+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999986
No 496
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=92.61 E-value=1.5 Score=46.82 Aligned_cols=48 Identities=25% Similarity=0.333 Sum_probs=36.0
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCC-ceeeeceeeEEEec
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYP-FTTLLPNLGVVSFD 385 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~yp-fTTl~p~lg~v~~~ 385 (518)
...++|.+||+.++|||||...|++--.+.+..| |+.+++..+.+.+.
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiP 149 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIP 149 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecc
Confidence 4578999999999999999999998755555444 55666666655554
No 497
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.60 E-value=0.075 Score=51.94 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=24.0
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++..--.++|+|..|||||||++.|++..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 333333469999999999999999999864
No 498
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.58 E-value=0.074 Score=51.70 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.3
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++.--.++|+|..|||||||++.|++..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444479999999999999999999864
No 499
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=92.57 E-value=0.23 Score=53.32 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=22.9
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
......|.+||+.+||||||...|++.
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 445678999999999999999888764
No 500
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.55 E-value=0.075 Score=51.70 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=23.9
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++..--.++|+|..|||||||++.|++..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333333468999999999999999999863
Done!