Query 046233
Match_columns 518
No_of_seqs 477 out of 2840
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 17:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lnz_A SPO0B-associated GTP-bi 100.0 1.6E-81 5.6E-86 650.4 24.8 329 183-512 1-332 (342)
2 1udx_A The GTP-binding protein 100.0 7.5E-75 2.6E-79 614.8 30.0 327 183-512 1-327 (416)
3 1xzp_A Probable tRNA modificat 100.0 7.2E-32 2.5E-36 290.6 -6.9 283 183-509 87-404 (482)
4 3tw8_B RAS-related protein RAB 99.9 4.9E-23 1.7E-27 186.7 17.1 167 339-515 8-176 (181)
5 3tkl_A RAS-related protein RAB 99.9 6.9E-23 2.4E-27 189.2 17.4 166 338-512 14-181 (196)
6 1g16_A RAS-related protein SEC 99.9 4.8E-23 1.6E-27 184.9 14.5 162 341-511 4-166 (170)
7 2fu5_C RAS-related protein RAB 99.9 5.1E-23 1.8E-27 188.4 13.1 167 339-514 7-175 (183)
8 3clv_A RAB5 protein, putative; 99.9 2.4E-22 8.4E-27 184.5 17.4 161 340-511 7-205 (208)
9 1wms_A RAB-9, RAB9, RAS-relate 99.9 3.6E-22 1.2E-26 181.1 17.6 164 340-510 7-174 (177)
10 1vg8_A RAS-related protein RAB 99.9 3.5E-22 1.2E-26 186.3 17.5 166 340-512 8-177 (207)
11 3q85_A GTP-binding protein REM 99.9 2.5E-22 8.5E-27 180.8 15.8 165 340-511 2-168 (169)
12 2bme_A RAB4A, RAS-related prot 99.9 2.2E-22 7.7E-27 184.2 15.6 165 339-512 9-175 (186)
13 1x3s_A RAS-related protein RAB 99.9 3.5E-22 1.2E-26 183.9 16.7 165 340-512 15-180 (195)
14 3cph_A RAS-related protein SEC 99.9 3.1E-22 1.1E-26 187.5 16.5 164 339-511 19-183 (213)
15 2hxs_A RAB-26, RAS-related pro 99.9 5.3E-23 1.8E-27 186.8 10.9 164 341-511 7-174 (178)
16 4dsu_A GTPase KRAS, isoform 2B 99.9 5.1E-22 1.7E-26 181.6 17.2 164 341-513 5-169 (189)
17 2bcg_Y Protein YP2, GTP-bindin 99.9 5E-22 1.7E-26 186.2 17.5 164 339-511 7-172 (206)
18 3bc1_A RAS-related protein RAB 99.9 6E-22 2E-26 181.3 17.5 166 340-513 11-188 (195)
19 2gf9_A RAS-related protein RAB 99.9 5.3E-22 1.8E-26 183.6 17.3 164 339-511 21-186 (189)
20 2efe_B Small GTP-binding prote 99.9 3.6E-22 1.2E-26 181.8 15.8 164 340-512 12-177 (181)
21 1z0f_A RAB14, member RAS oncog 99.9 4E-22 1.4E-26 180.4 15.9 161 340-509 15-177 (179)
22 2g6b_A RAS-related protein RAB 99.9 6.5E-22 2.2E-26 179.9 17.4 164 340-512 10-176 (180)
23 2q3h_A RAS homolog gene family 99.9 2.9E-22 1E-26 186.7 15.3 165 338-513 18-198 (201)
24 1z2a_A RAS-related protein RAB 99.9 2.4E-22 8.1E-27 180.1 13.9 161 340-510 5-167 (168)
25 2a5j_A RAS-related protein RAB 99.9 4.6E-22 1.6E-26 184.6 16.1 164 340-512 21-186 (191)
26 1z08_A RAS-related protein RAB 99.9 3.9E-22 1.3E-26 179.4 15.1 162 340-510 6-169 (170)
27 1r2q_A RAS-related protein RAB 99.9 3.2E-22 1.1E-26 179.1 14.2 160 341-509 7-168 (170)
28 1ky3_A GTP-binding protein YPT 99.9 6.9E-22 2.4E-26 179.3 16.4 165 340-511 8-179 (182)
29 2ew1_A RAS-related protein RAB 99.9 4.6E-22 1.6E-26 188.6 15.5 166 338-512 24-191 (201)
30 2y8e_A RAB-protein 6, GH09086P 99.9 2.4E-22 8.2E-27 181.9 12.7 161 341-510 15-177 (179)
31 2nzj_A GTP-binding protein REM 99.9 7.6E-22 2.6E-26 178.3 15.9 167 340-513 4-172 (175)
32 2qu8_A Putative nucleolar GTP- 99.9 5.4E-22 1.8E-26 190.3 15.6 168 341-512 30-207 (228)
33 2lkc_A Translation initiation 99.9 7.1E-22 2.4E-26 179.3 15.6 159 340-514 8-175 (178)
34 1zbd_A Rabphilin-3A; G protein 99.9 1.1E-21 3.6E-26 183.2 17.1 164 339-511 7-172 (203)
35 3q72_A GTP-binding protein RAD 99.9 4E-22 1.4E-26 179.0 13.6 160 341-511 3-165 (166)
36 2erx_A GTP-binding protein DI- 99.9 1.9E-22 6.5E-27 181.0 11.3 162 341-510 4-167 (172)
37 2hup_A RAS-related protein RAB 99.9 5.5E-22 1.9E-26 186.7 15.0 165 338-511 27-194 (201)
38 1z0j_A RAB-22, RAS-related pro 99.9 9.1E-22 3.1E-26 176.6 15.5 160 341-509 7-168 (170)
39 2il1_A RAB12; G-protein, GDP, 99.9 3.8E-22 1.3E-26 185.9 13.5 162 340-510 26-190 (192)
40 1ek0_A Protein (GTP-binding pr 99.9 4.6E-22 1.6E-26 178.1 13.4 160 341-509 4-168 (170)
41 2a9k_A RAS-related protein RAL 99.9 8.7E-22 3E-26 179.4 15.3 163 341-512 19-183 (187)
42 2bov_A RAla, RAS-related prote 99.9 1.6E-21 5.4E-26 181.4 17.4 163 340-511 14-178 (206)
43 2oil_A CATX-8, RAS-related pro 99.9 1.1E-21 3.8E-26 181.7 16.2 165 338-511 23-189 (193)
44 1c1y_A RAS-related protein RAP 99.9 7.6E-22 2.6E-26 176.6 14.6 160 341-509 4-166 (167)
45 2fn4_A P23, RAS-related protei 99.9 9.8E-22 3.3E-26 178.1 15.4 163 341-513 10-175 (181)
46 2wji_A Ferrous iron transport 99.9 3.4E-22 1.2E-26 181.9 12.3 158 341-508 4-163 (165)
47 2dyk_A GTP-binding protein; GT 99.9 4.6E-22 1.6E-26 177.3 12.9 158 340-508 1-160 (161)
48 4bas_A ADP-ribosylation factor 99.9 1.9E-21 6.6E-26 179.9 17.4 163 340-512 17-191 (199)
49 1u8z_A RAS-related protein RAL 99.9 7.9E-22 2.7E-26 175.9 14.2 161 341-510 5-167 (168)
50 2iwr_A Centaurin gamma 1; ANK 99.9 1E-21 3.5E-26 179.0 15.2 161 341-515 8-174 (178)
51 2ce2_X GTPase HRAS; signaling 99.9 1.7E-21 5.8E-26 173.0 16.2 161 341-510 4-165 (166)
52 4dkx_A RAS-related protein RAB 99.9 7.5E-22 2.6E-26 191.0 15.0 161 341-510 14-176 (216)
53 3t5g_A GTP-binding protein RHE 99.9 1.4E-21 4.7E-26 178.6 15.8 164 340-512 6-171 (181)
54 2o52_A RAS-related protein RAB 99.9 6.7E-22 2.3E-26 185.7 14.0 167 338-513 23-191 (200)
55 3t1o_A Gliding protein MGLA; G 99.9 3.3E-21 1.1E-25 177.1 18.1 167 339-513 13-195 (198)
56 2f7s_A C25KG, RAS-related prot 99.9 8.4E-22 2.9E-26 186.1 14.2 164 338-511 23-200 (217)
57 1kao_A RAP2A; GTP-binding prot 99.9 1E-21 3.5E-26 175.0 13.7 161 341-510 4-166 (167)
58 2gf0_A GTP-binding protein DI- 99.9 4.3E-22 1.5E-26 184.3 11.6 162 341-511 9-172 (199)
59 2h57_A ADP-ribosylation factor 99.9 1.7E-21 6E-26 180.2 15.6 162 340-512 21-189 (190)
60 3cbq_A GTP-binding protein REM 99.9 1.6E-21 5.5E-26 183.2 15.6 167 340-513 23-191 (195)
61 1upt_A ARL1, ADP-ribosylation 99.9 3.3E-21 1.1E-25 173.4 17.0 158 340-510 7-169 (171)
62 3cpj_B GTP-binding protein YPT 99.9 1.5E-21 5.1E-26 186.4 15.4 165 338-511 11-177 (223)
63 3con_A GTPase NRAS; structural 99.9 2.5E-21 8.6E-26 178.5 16.4 164 341-513 22-186 (190)
64 2fg5_A RAB-22B, RAS-related pr 99.9 1.2E-21 4.2E-26 182.2 14.3 162 339-511 22-187 (192)
65 3kkq_A RAS-related protein M-R 99.9 2.8E-21 9.5E-26 176.8 15.9 161 341-510 19-182 (183)
66 3reg_A RHO-like small GTPase; 99.9 2.1E-21 7.3E-26 180.2 15.2 162 340-512 23-190 (194)
67 3dz8_A RAS-related protein RAB 99.9 4.9E-22 1.7E-26 184.4 10.9 165 338-511 21-187 (191)
68 2yc2_C IFT27, small RAB-relate 99.9 7.2E-22 2.5E-26 183.6 11.8 167 339-512 19-194 (208)
69 3l0i_B RAS-related protein RAB 99.9 2.3E-23 7.7E-28 195.0 1.6 164 338-510 31-196 (199)
70 1z06_A RAS-related protein RAB 99.9 1.9E-21 6.6E-26 179.8 14.4 164 340-510 20-188 (189)
71 1ksh_A ARF-like protein 2; sma 99.9 2.9E-21 1E-25 177.5 15.5 159 340-511 18-181 (186)
72 3oes_A GTPase rhebl1; small GT 99.9 1.7E-21 5.9E-26 182.5 14.1 166 339-513 23-190 (201)
73 4dhe_A Probable GTP-binding pr 99.9 5.4E-22 1.9E-26 187.8 10.5 167 340-512 29-213 (223)
74 3iev_A GTP-binding protein ERA 99.9 1.5E-21 5.2E-26 197.9 14.5 165 341-510 11-182 (308)
75 1mh1_A RAC1; GTP-binding, GTPa 99.9 1.9E-21 6.5E-26 177.4 13.6 161 341-512 6-182 (186)
76 2p5s_A RAS and EF-hand domain 99.9 1.9E-21 6.4E-26 182.0 13.9 163 339-510 27-197 (199)
77 2atx_A Small GTP binding prote 99.9 7.6E-21 2.6E-25 176.2 17.6 159 340-509 18-192 (194)
78 1r8s_A ADP-ribosylation factor 99.9 3.8E-21 1.3E-25 172.3 15.0 156 342-510 2-162 (164)
79 2j0v_A RAC-like GTP-binding pr 99.9 2.2E-21 7.4E-26 182.6 14.0 161 341-512 10-182 (212)
80 3bwd_D RAC-like GTP-binding pr 99.9 1.7E-21 5.6E-26 177.5 11.4 158 341-509 9-180 (182)
81 1m2o_B GTP-binding protein SAR 99.9 5E-21 1.7E-25 178.6 14.9 154 341-507 24-189 (190)
82 1f6b_A SAR1; gtpases, N-termin 99.9 3E-21 1E-25 181.5 13.3 155 341-508 26-197 (198)
83 2gj8_A MNME, tRNA modification 99.9 7.4E-22 2.5E-26 181.7 8.8 161 341-511 5-167 (172)
84 1zj6_A ADP-ribosylation factor 99.9 4E-21 1.4E-25 177.3 13.7 161 339-512 15-180 (187)
85 4a9a_A Ribosome-interacting GT 99.9 2.5E-21 8.4E-26 202.7 13.3 125 339-466 71-195 (376)
86 3iby_A Ferrous iron transport 99.8 6.7E-22 2.3E-26 195.9 8.4 158 340-507 1-164 (256)
87 3q3j_B RHO-related GTP-binding 99.8 6E-21 2E-25 181.8 14.5 162 340-512 27-205 (214)
88 2atv_A RERG, RAS-like estrogen 99.8 6.9E-21 2.3E-25 177.4 14.6 161 341-511 29-192 (196)
89 1moz_A ARL1, ADP-ribosylation 99.8 4.8E-21 1.6E-25 174.9 13.1 159 340-511 18-181 (183)
90 2h17_A ADP-ribosylation factor 99.8 4.6E-21 1.6E-25 176.4 13.0 154 341-507 22-180 (181)
91 1zd9_A ADP-ribosylation factor 99.8 6.8E-21 2.3E-25 176.6 14.0 161 339-511 21-186 (188)
92 4djt_A GTP-binding nuclear pro 99.8 2.6E-21 8.8E-26 182.9 11.1 164 340-512 11-177 (218)
93 2wjg_A FEOB, ferrous iron tran 99.8 2.2E-21 7.5E-26 178.3 9.9 162 341-512 8-171 (188)
94 2gco_A H9, RHO-related GTP-bin 99.8 1.7E-20 5.8E-25 176.0 15.8 158 341-509 26-199 (201)
95 1fzq_A ADP-ribosylation factor 99.8 7.1E-21 2.4E-25 176.0 13.0 159 340-511 16-179 (181)
96 3ihw_A Centg3; RAS, centaurin, 99.8 2.4E-20 8.3E-25 173.3 15.9 157 341-512 21-182 (184)
97 2x77_A ADP-ribosylation factor 99.8 2.1E-20 7.3E-25 172.4 14.8 160 339-511 21-185 (189)
98 1svi_A GTP-binding protein YSX 99.8 1.4E-20 4.7E-25 173.9 13.2 160 340-509 23-194 (195)
99 2fv8_A H6, RHO-related GTP-bin 99.8 2.1E-20 7.1E-25 176.2 14.6 160 341-511 26-201 (207)
100 2j1l_A RHO-related GTP-binding 99.8 1.4E-20 4.7E-25 178.8 13.4 161 341-512 35-211 (214)
101 3pqc_A Probable GTP-binding pr 99.8 2.5E-20 8.5E-25 171.2 14.3 161 340-510 23-194 (195)
102 3a1s_A Iron(II) transport prot 99.8 1.3E-20 4.6E-25 186.6 13.1 159 341-509 6-166 (258)
103 3c5c_A RAS-like protein 12; GD 99.8 2.5E-20 8.5E-25 173.2 14.0 161 341-510 22-186 (187)
104 1m7b_A RND3/RHOE small GTP-bin 99.8 1.9E-20 6.5E-25 172.7 12.8 158 341-509 8-182 (184)
105 3b1v_A Ferrous iron uptake tra 99.8 8.2E-21 2.8E-25 190.0 11.0 158 341-509 4-163 (272)
106 4gzl_A RAS-related C3 botulinu 99.8 1.8E-20 6.2E-25 176.7 12.8 158 340-508 30-203 (204)
107 2g3y_A GTP-binding protein GEM 99.8 3E-20 1E-24 178.9 14.0 165 340-511 37-204 (211)
108 2cjw_A GTP-binding protein GEM 99.8 7E-20 2.4E-24 171.6 16.1 165 340-511 6-173 (192)
109 2b6h_A ADP-ribosylation factor 99.8 2.7E-20 9.1E-25 174.0 13.1 157 340-509 29-190 (192)
110 1wxq_A GTP-binding protein; st 99.8 2.2E-21 7.7E-26 204.1 6.2 160 342-502 2-262 (397)
111 3i8s_A Ferrous iron transport 99.8 2.2E-21 7.4E-26 193.5 5.4 160 341-509 4-168 (274)
112 1mky_A Probable GTP-binding pr 99.8 4E-20 1.4E-24 196.0 15.0 163 340-511 1-167 (439)
113 3gj0_A GTP-binding nuclear pro 99.8 8E-21 2.7E-25 180.5 8.0 159 341-511 16-176 (221)
114 2dby_A GTP-binding protein; GD 99.8 2.6E-20 8.8E-25 194.4 12.5 155 341-495 2-247 (368)
115 1jal_A YCHF protein; nucleotid 99.8 3E-20 1E-24 193.6 12.7 169 341-509 3-278 (363)
116 3gee_A MNME, tRNA modification 99.8 4.3E-20 1.5E-24 198.6 14.1 162 340-509 233-397 (476)
117 1gwn_A RHO-related GTP-binding 99.8 5.5E-20 1.9E-24 174.5 12.6 160 339-509 27-203 (205)
118 3lvq_E ARF-GAP with SH3 domain 99.8 6.5E-20 2.2E-24 196.3 14.3 161 340-513 322-487 (497)
119 2e87_A Hypothetical protein PH 99.8 2.5E-19 8.6E-24 184.9 18.0 168 339-511 166-337 (357)
120 1wf3_A GTP-binding protein; GT 99.8 3.1E-20 1E-24 188.3 10.2 163 341-509 8-172 (301)
121 3llu_A RAS-related GTP-binding 99.8 6.3E-20 2.1E-24 171.4 11.6 160 340-508 20-195 (196)
122 3r7w_A Gtpase1, GTP-binding pr 99.8 4.3E-20 1.5E-24 187.0 11.3 165 341-508 4-179 (307)
123 2fh5_B SR-beta, signal recogni 99.8 7.7E-20 2.6E-24 172.2 11.6 159 340-507 7-213 (214)
124 2hjg_A GTP-binding protein ENG 99.8 8.2E-20 2.8E-24 193.4 12.4 165 340-511 175-350 (436)
125 3k53_A Ferrous iron transport 99.8 6.8E-20 2.3E-24 181.5 10.6 163 340-511 3-167 (271)
126 2qtf_A Protein HFLX, GTP-bindi 99.8 2.2E-19 7.5E-24 186.9 14.4 167 340-511 179-355 (364)
127 3th5_A RAS-related C3 botulinu 99.7 3.3E-21 1.1E-25 180.6 0.0 159 339-508 29-203 (204)
128 4dcu_A GTP-binding protein ENG 99.8 1.3E-19 4.4E-24 193.0 12.0 166 340-512 195-371 (456)
129 2cxx_A Probable GTP-binding pr 99.8 1.3E-19 4.5E-24 166.0 10.4 163 340-514 1-188 (190)
130 2wkq_A NPH1-1, RAS-related C3 99.8 5.6E-19 1.9E-23 176.6 15.3 162 338-510 153-330 (332)
131 3lxw_A GTPase IMAP family memb 99.8 5.4E-19 1.8E-23 173.5 13.4 168 341-510 22-208 (247)
132 3o47_A ADP-ribosylation factor 99.8 5.2E-19 1.8E-23 181.0 13.7 158 341-511 166-328 (329)
133 2f9l_A RAB11B, member RAS onco 99.8 1.9E-18 6.6E-23 161.7 16.1 163 340-511 5-169 (199)
134 2zej_A Dardarin, leucine-rich 99.8 1.7E-19 5.9E-24 166.8 8.3 162 341-513 3-181 (184)
135 1ega_A Protein (GTP-binding pr 99.8 4.2E-19 1.4E-23 179.5 11.4 161 341-509 9-174 (301)
136 3qq5_A Small GTP-binding prote 99.8 1.4E-19 4.8E-24 192.0 7.2 162 340-510 34-196 (423)
137 3dpu_A RAB family protein; roc 99.8 4.8E-19 1.6E-23 192.0 10.6 159 340-511 41-209 (535)
138 2hjg_A GTP-binding protein ENG 99.8 2.9E-19 9.8E-24 189.3 8.5 159 341-510 4-165 (436)
139 1mky_A Probable GTP-binding pr 99.8 2.7E-18 9.3E-23 181.9 15.5 165 340-511 180-356 (439)
140 3lxx_A GTPase IMAP family memb 99.8 1.7E-18 5.7E-23 167.6 11.6 168 340-510 29-214 (239)
141 3geh_A MNME, tRNA modification 99.8 1E-18 3.5E-23 187.3 10.9 160 340-511 224-385 (462)
142 1oix_A RAS-related protein RAB 99.7 1.6E-17 5.6E-22 155.1 15.3 161 339-508 28-190 (191)
143 3c5h_A Glucocorticoid receptor 99.7 5.1E-18 1.7E-22 167.0 11.9 167 341-509 20-254 (255)
144 2xtp_A GTPase IMAP family memb 99.7 2.7E-18 9.3E-23 167.9 9.3 166 340-510 22-208 (260)
145 1wb1_A Translation elongation 99.7 8.9E-18 3E-22 180.7 13.6 156 341-510 20-189 (482)
146 3izy_P Translation initiation 99.7 7E-19 2.4E-23 191.7 4.2 158 340-510 4-168 (537)
147 3t5d_A Septin-7; GTP-binding p 99.7 6.9E-18 2.3E-22 167.5 10.1 163 341-509 9-203 (274)
148 1s0u_A EIF-2-gamma, translatio 99.7 2.6E-17 9E-22 172.8 14.4 159 340-510 8-198 (408)
149 3sjy_A Translation initiation 99.7 9.8E-18 3.4E-22 175.8 10.6 160 341-511 9-193 (403)
150 1kk1_A EIF2gamma; initiation o 99.7 2.4E-17 8.3E-22 173.0 13.1 160 339-510 9-200 (410)
151 3j2k_7 ERF3, eukaryotic polype 99.7 3.9E-17 1.3E-21 173.6 13.7 150 339-502 16-217 (439)
152 3tr5_A RF-3, peptide chain rel 99.7 2.3E-17 7.9E-22 179.5 12.2 119 336-468 9-149 (528)
153 4dcu_A GTP-binding protein ENG 99.7 5.7E-18 1.9E-22 180.3 6.8 161 340-510 23-185 (456)
154 2ywe_A GTP-binding protein LEP 99.7 8E-17 2.7E-21 177.6 14.6 159 338-511 4-185 (600)
155 3p26_A Elongation factor 1 alp 99.7 3.7E-17 1.3E-21 175.5 11.4 151 337-499 30-227 (483)
156 3cb4_D GTP-binding protein LEP 99.7 8E-17 2.7E-21 177.7 14.0 158 339-511 3-183 (599)
157 2ohf_A Protein OLA1, GTP-bindi 99.7 7E-17 2.4E-21 169.9 11.7 94 337-430 19-128 (396)
158 2c78_A Elongation factor TU-A; 99.7 6.1E-17 2.1E-21 169.7 10.3 156 340-509 11-211 (405)
159 2aka_B Dynamin-1; fusion prote 99.7 2.2E-17 7.6E-22 163.7 6.3 164 340-508 26-251 (299)
160 1zun_B Sulfate adenylate trans 99.7 1.2E-16 4.1E-21 169.2 11.9 151 338-501 22-215 (434)
161 1g7s_A Translation initiation 99.7 4.6E-16 1.6E-20 171.5 16.1 157 341-510 6-218 (594)
162 3r7w_B Gtpase2, GTP-binding pr 99.7 7.1E-17 2.4E-21 166.2 7.9 161 342-510 1-174 (331)
163 2elf_A Protein translation elo 99.7 2.5E-16 8.5E-21 164.2 12.2 146 342-511 23-181 (370)
164 1jwy_B Dynamin A GTPase domain 99.7 2.6E-16 8.9E-21 157.6 11.7 167 340-511 24-263 (315)
165 1d2e_A Elongation factor TU (E 99.7 2.5E-16 8.5E-21 164.9 11.9 156 341-510 4-195 (397)
166 1zo1_I IF2, translation initia 99.7 2.8E-17 9.5E-22 177.8 4.5 154 340-507 4-164 (501)
167 3izq_1 HBS1P, elongation facto 99.7 1.6E-16 5.5E-21 175.6 10.4 150 338-500 165-362 (611)
168 1nrj_B SR-beta, signal recogni 99.7 1E-16 3.6E-21 151.2 7.5 148 340-496 12-170 (218)
169 3mca_A HBS1, elongation factor 99.6 6.2E-17 2.1E-21 178.3 4.0 158 338-509 175-396 (592)
170 1jny_A EF-1-alpha, elongation 99.6 2.4E-16 8.1E-21 167.1 8.0 150 339-501 5-204 (435)
171 1ni3_A YCHF GTPase, YCHF GTP-b 99.6 1.6E-15 5.4E-20 159.5 13.6 170 340-509 20-306 (392)
172 1pui_A ENGB, probable GTP-bind 99.6 1E-15 3.4E-20 143.3 10.8 166 336-511 22-200 (210)
173 1r5b_A Eukaryotic peptide chai 99.6 2.8E-16 9.5E-21 168.3 7.6 152 336-501 39-243 (467)
174 1f60_A Elongation factor EEF1A 99.6 7.5E-16 2.6E-20 164.5 8.5 147 340-500 7-202 (458)
175 2j69_A Bacterial dynamin-like 99.6 4.9E-15 1.7E-19 166.0 14.1 164 339-511 68-326 (695)
176 3def_A T7I23.11 protein; chlor 99.6 8.1E-15 2.8E-19 144.5 13.2 123 340-467 36-165 (262)
177 1dar_A EF-G, elongation factor 99.6 1.1E-14 3.6E-19 163.2 15.2 117 338-468 10-144 (691)
178 2xex_A Elongation factor G; GT 99.6 7.4E-15 2.5E-19 164.5 13.5 116 339-468 9-142 (693)
179 2h5e_A Peptide chain release f 99.6 1.4E-14 5E-19 157.5 15.4 119 336-468 9-149 (529)
180 2ged_A SR-beta, signal recogni 99.6 4E-15 1.4E-19 137.2 8.6 122 340-470 48-173 (193)
181 3t34_A Dynamin-related protein 99.6 5.4E-15 1.9E-19 152.3 9.6 163 339-505 33-256 (360)
182 3avx_A Elongation factor TS, e 99.5 8.7E-15 3E-19 170.2 11.4 158 339-510 295-486 (1289)
183 2qag_A Septin-2, protein NEDD5 99.5 8.8E-15 3E-19 151.8 9.8 164 340-510 37-233 (361)
184 3p32_A Probable GTPase RV1496/ 99.5 2.7E-14 9.4E-19 147.3 11.9 104 387-510 171-284 (355)
185 2dy1_A Elongation factor G; tr 99.5 6E-14 2.1E-18 156.4 15.3 116 337-466 6-139 (665)
186 2rdo_7 EF-G, elongation factor 99.5 7.9E-14 2.7E-18 156.5 15.8 117 339-468 9-149 (704)
187 1h65_A Chloroplast outer envel 99.5 5.1E-14 1.7E-18 139.2 12.6 129 340-469 39-170 (270)
188 2x2e_A Dynamin-1; nitration, h 99.5 3.6E-15 1.2E-19 153.6 4.1 162 340-506 31-254 (353)
189 2www_A Methylmalonic aciduria 99.5 6.9E-14 2.3E-18 144.4 10.7 151 340-510 74-279 (349)
190 3vqt_A RF-3, peptide chain rel 99.5 2.4E-13 8.1E-18 148.6 14.2 123 332-468 23-167 (548)
191 2wsm_A Hydrogenase expression/ 99.5 1.1E-13 3.8E-18 130.9 9.8 156 338-513 28-217 (221)
192 3zvr_A Dynamin-1; hydrolase, D 99.4 1.4E-13 4.7E-18 155.3 8.2 163 339-506 50-274 (772)
193 1yrb_A ATP(GTP)binding protein 99.4 1.3E-12 4.5E-17 126.8 11.7 118 388-510 109-257 (262)
194 2p67_A LAO/AO transport system 99.4 9.8E-13 3.3E-17 135.1 10.0 153 337-509 53-260 (341)
195 2qnr_A Septin-2, protein NEDD5 99.4 1.2E-12 4.2E-17 132.3 9.8 161 341-510 19-214 (301)
196 1n0u_A EF-2, elongation factor 99.3 1.3E-12 4.4E-17 149.3 9.7 116 338-466 17-163 (842)
197 2qpt_A EH domain-containing pr 99.3 1.4E-12 4.9E-17 142.4 9.4 125 339-470 64-235 (550)
198 2hf9_A Probable hydrogenase ni 99.3 3.5E-12 1.2E-16 121.0 10.5 151 338-511 36-225 (226)
199 2qm8_A GTPase/ATPase; G protei 99.3 5.4E-12 1.9E-16 129.7 10.9 156 334-509 49-260 (337)
200 3j25_A Tetracycline resistance 99.3 1.2E-12 4.1E-17 145.3 6.4 158 340-511 2-240 (638)
201 2qag_C Septin-7; cell cycle, c 99.3 8.3E-12 2.8E-16 132.3 9.7 162 341-509 32-226 (418)
202 4fn5_A EF-G 1, elongation fact 99.2 4.8E-11 1.6E-15 133.9 14.4 118 337-467 10-151 (709)
203 3ec1_A YQEH GTPase; atnos1, at 99.2 4.3E-13 1.5E-17 139.5 -3.5 147 341-498 163-319 (369)
204 1cip_A Protein (guanine nucleo 99.1 5.7E-11 2E-15 123.2 6.3 121 382-511 188-345 (353)
205 3h2y_A GTPase family protein; 99.1 1.3E-12 4.4E-17 136.0 -6.2 142 341-493 161-313 (368)
206 4fid_A G protein alpha subunit 99.0 4.9E-10 1.7E-14 115.8 10.7 116 387-510 160-328 (340)
207 1u0l_A Probable GTPase ENGC; p 99.0 2.1E-10 7.3E-15 115.7 7.5 103 388-505 63-168 (301)
208 1zcb_A G alpha I/13; GTP-bindi 99.0 2.9E-10 1E-14 118.2 6.9 121 382-511 196-354 (362)
209 1azs_C GS-alpha; complex (lyas 98.9 2E-09 6.7E-14 113.6 9.6 122 382-512 212-387 (402)
210 2xtz_A Guanine nucleotide-bind 98.9 1.5E-09 5.3E-14 112.5 5.9 117 387-511 182-346 (354)
211 3ohm_A Guanine nucleotide-bind 98.8 2.9E-09 1E-13 109.4 5.6 117 387-511 166-319 (327)
212 3l82_B F-box only protein 4; T 98.8 9.8E-09 3.4E-13 99.7 7.5 103 408-511 115-224 (227)
213 2yv5_A YJEQ protein; hydrolase 98.8 1.4E-08 4.7E-13 102.6 8.6 86 415-505 76-164 (302)
214 1puj_A YLQF, conserved hypothe 98.7 1.5E-08 5.1E-13 101.6 7.1 105 392-511 3-107 (282)
215 2qag_B Septin-6, protein NEDD5 98.7 1.6E-08 5.6E-13 107.3 6.0 152 332-491 32-217 (427)
216 1tq4_A IIGP1, interferon-induc 98.6 9E-08 3.1E-12 101.3 11.3 156 342-512 71-255 (413)
217 2j37_W Signal recognition part 98.6 9.5E-09 3.2E-13 111.3 3.7 153 340-507 101-310 (504)
218 3l2o_B F-box only protein 4; s 98.6 5E-08 1.7E-12 98.8 6.5 103 408-511 200-309 (312)
219 3sop_A Neuronal-specific septi 98.6 1.2E-07 4.2E-12 94.4 9.2 141 341-488 3-178 (270)
220 3h2y_A GTPase family protein; 98.4 2.6E-07 9E-12 95.9 6.1 90 411-508 61-158 (368)
221 3ec1_A YQEH GTPase; atnos1, at 98.4 2.6E-07 8.9E-12 95.9 5.9 91 411-509 63-161 (369)
222 1puj_A YLQF, conserved hypothe 98.3 3E-07 1E-11 92.1 5.5 57 341-401 121-178 (282)
223 1f5n_A Interferon-induced guan 98.3 4.2E-07 1.4E-11 100.2 7.1 62 339-401 37-104 (592)
224 2v3c_C SRP54, signal recogniti 98.2 2.9E-07 1E-11 97.8 2.8 151 342-508 101-309 (432)
225 3cnl_A YLQF, putative uncharac 98.2 3.3E-07 1.1E-11 90.9 2.6 94 395-506 4-97 (262)
226 3cnl_A YLQF, putative uncharac 98.1 1.4E-06 4.8E-11 86.4 3.7 57 341-401 100-157 (262)
227 3dm5_A SRP54, signal recogniti 98.1 6.7E-06 2.3E-10 87.7 8.5 94 388-497 183-278 (443)
228 3szr_A Interferon-induced GTP- 97.8 6.4E-05 2.2E-09 82.9 10.6 25 340-364 45-69 (608)
229 1t9h_A YLOQ, probable GTPase E 97.7 8.2E-06 2.8E-10 83.0 2.2 86 415-504 83-171 (307)
230 3kl4_A SRP54, signal recogniti 97.7 3.8E-05 1.3E-09 81.7 6.8 97 387-497 179-277 (433)
231 1j8m_F SRP54, signal recogniti 97.7 0.0001 3.6E-09 74.2 9.2 97 387-500 180-281 (297)
232 2rcn_A Probable GTPase ENGC; Y 97.4 0.00032 1.1E-08 72.8 9.1 84 416-504 128-213 (358)
233 3q5d_A Atlastin-1; G protein, 97.3 0.00015 5E-09 77.5 5.0 62 339-400 66-152 (447)
234 3e70_C DPA, signal recognition 97.2 0.00045 1.5E-08 70.7 7.0 144 341-500 130-310 (328)
235 4dzz_A Plasmid partitioning pr 97.1 0.0022 7.5E-08 59.0 10.3 87 387-486 75-161 (206)
236 2xxa_A Signal recognition part 97.1 0.0017 5.9E-08 68.8 10.1 21 341-361 101-121 (433)
237 2px0_A Flagellar biosynthesis 96.8 0.0031 1.1E-07 63.3 9.1 134 342-490 107-273 (296)
238 1vma_A Cell division protein F 96.7 0.0032 1.1E-07 63.7 8.2 99 388-499 187-290 (306)
239 2yhs_A FTSY, cell division pro 96.5 0.0031 1.1E-07 68.1 6.5 143 341-499 294-479 (503)
240 1zu4_A FTSY; GTPase, signal re 96.5 0.0067 2.3E-07 61.7 8.6 142 341-498 106-294 (320)
241 1rj9_A FTSY, signal recognitio 96.4 0.0093 3.2E-07 60.2 9.5 144 342-498 104-287 (304)
242 1nij_A Hypothetical protein YJ 96.4 0.0018 6.2E-08 65.4 4.0 26 339-364 3-28 (318)
243 2yv5_A YJEQ protein; hydrolase 95.9 0.01 3.5E-07 59.5 6.5 53 342-399 167-227 (302)
244 3cwq_A Para family chromosome 95.8 0.035 1.2E-06 52.2 9.6 84 387-486 67-152 (209)
245 1ls1_A Signal recognition part 95.8 0.026 8.8E-07 56.5 8.8 95 388-498 181-277 (295)
246 2rcn_A Probable GTPase ENGC; Y 95.8 0.0035 1.2E-07 65.0 2.5 24 342-365 217-240 (358)
247 2ffh_A Protein (FFH); SRP54, s 95.8 0.034 1.2E-06 58.8 10.1 90 387-490 180-271 (425)
248 1t9h_A YLOQ, probable GTPase E 95.5 0.0037 1.3E-07 63.4 1.6 54 342-400 175-236 (307)
249 1kgd_A CASK, peripheral plasma 95.4 0.0065 2.2E-07 55.7 2.7 38 342-379 7-46 (180)
250 3ney_A 55 kDa erythrocyte memb 95.2 0.0074 2.5E-07 57.4 2.3 40 342-381 21-62 (197)
251 1u0l_A Probable GTPase ENGC; p 95.1 0.017 5.8E-07 57.7 5.0 23 342-364 171-193 (301)
252 1ye8_A Protein THEP1, hypothet 94.9 0.012 4.2E-07 54.4 2.8 23 342-364 2-24 (178)
253 3end_A Light-independent proto 94.8 0.22 7.4E-06 49.1 12.0 68 388-465 157-225 (307)
254 3k9g_A PF-32 protein; ssgcid, 94.7 0.24 8.1E-06 47.6 11.6 64 388-464 145-208 (267)
255 1lvg_A Guanylate kinase, GMP k 94.6 0.014 4.8E-07 54.5 2.7 23 342-364 6-28 (198)
256 3tr0_A Guanylate kinase, GMP k 94.6 0.014 4.8E-07 53.6 2.6 24 342-365 9-32 (205)
257 1zp6_A Hypothetical protein AT 94.5 0.015 5E-07 53.0 2.4 22 342-363 11-32 (191)
258 1znw_A Guanylate kinase, GMP k 94.5 0.016 5.5E-07 54.1 2.6 24 342-365 22-45 (207)
259 1ex7_A Guanylate kinase; subst 94.4 0.017 5.8E-07 54.3 2.6 39 343-381 4-44 (186)
260 1z6g_A Guanylate kinase; struc 94.4 0.017 5.8E-07 54.8 2.6 32 333-364 16-47 (218)
261 3a00_A Guanylate kinase, GMP k 94.3 0.018 6.1E-07 52.9 2.6 23 343-365 4-26 (186)
262 2onk_A Molybdate/tungstate ABC 94.3 0.023 7.8E-07 55.3 3.5 30 333-363 18-47 (240)
263 1s96_A Guanylate kinase, GMP k 94.3 0.017 5.8E-07 55.4 2.5 24 342-365 18-41 (219)
264 3c8u_A Fructokinase; YP_612366 94.1 0.02 7E-07 53.5 2.5 23 341-363 23-45 (208)
265 3tau_A Guanylate kinase, GMP k 94.1 0.021 7.3E-07 53.5 2.6 24 342-365 10-33 (208)
266 3tif_A Uncharacterized ABC tra 94.1 0.026 9E-07 54.5 3.2 30 335-364 26-55 (235)
267 3vaa_A Shikimate kinase, SK; s 94.0 0.025 8.5E-07 52.4 2.9 32 332-363 17-48 (199)
268 1kag_A SKI, shikimate kinase I 93.9 0.025 8.6E-07 50.5 2.7 22 342-363 6-27 (173)
269 2bdt_A BH3686; alpha-beta prot 93.7 0.028 9.7E-07 51.2 2.6 21 342-362 4-24 (189)
270 2cbz_A Multidrug resistance-as 93.7 0.036 1.2E-06 53.6 3.4 30 334-363 25-54 (237)
271 1htw_A HI0065; nucleotide-bind 93.7 0.034 1.2E-06 50.7 3.0 27 338-364 31-57 (158)
272 4gp7_A Metallophosphoesterase; 93.6 0.027 9.2E-07 51.2 2.3 22 341-362 10-31 (171)
273 1b0u_A Histidine permease; ABC 93.6 0.034 1.2E-06 54.7 3.2 30 335-364 27-56 (262)
274 2ff7_A Alpha-hemolysin translo 93.6 0.035 1.2E-06 54.1 3.2 31 334-364 29-59 (247)
275 2j41_A Guanylate kinase; GMP, 93.6 0.03 1E-06 51.3 2.6 23 342-364 8-30 (207)
276 3kb2_A SPBC2 prophage-derived 93.5 0.036 1.2E-06 49.1 2.7 22 342-363 3-24 (173)
277 1np6_A Molybdopterin-guanine d 93.5 0.036 1.2E-06 51.4 2.9 25 339-363 5-29 (174)
278 2olj_A Amino acid ABC transpor 93.4 0.04 1.4E-06 54.3 3.3 24 341-364 51-74 (263)
279 4eun_A Thermoresistant glucoki 93.4 0.035 1.2E-06 51.4 2.6 22 342-363 31-52 (200)
280 1ji0_A ABC transporter; ATP bi 93.3 0.041 1.4E-06 53.2 3.2 30 335-364 27-56 (240)
281 2pcj_A ABC transporter, lipopr 93.3 0.026 9E-07 54.0 1.7 30 335-364 25-54 (224)
282 1bif_A 6-phosphofructo-2-kinas 93.2 0.024 8.1E-07 60.1 1.4 102 341-446 40-147 (469)
283 2ihy_A ABC transporter, ATP-bi 93.2 0.045 1.5E-06 54.4 3.3 29 336-364 43-71 (279)
284 3asz_A Uridine kinase; cytidin 93.2 0.034 1.2E-06 51.5 2.2 22 342-363 8-29 (211)
285 1g6h_A High-affinity branched- 93.1 0.033 1.1E-06 54.4 2.2 30 335-364 28-57 (257)
286 2v9p_A Replication protein E1; 93.1 0.042 1.4E-06 55.7 2.8 30 334-363 120-149 (305)
287 3lw7_A Adenylate kinase relate 93.0 0.043 1.5E-06 48.2 2.6 19 342-360 3-21 (179)
288 1knq_A Gluconate kinase; ALFA/ 93.0 0.042 1.4E-06 49.3 2.6 22 342-363 10-31 (175)
289 1mv5_A LMRA, multidrug resista 93.0 0.035 1.2E-06 53.8 2.1 32 333-364 21-52 (243)
290 2ehv_A Hypothetical protein PH 93.0 0.044 1.5E-06 51.5 2.7 21 341-361 31-51 (251)
291 3b85_A Phosphate starvation-in 93.0 0.041 1.4E-06 52.3 2.5 23 341-363 23-45 (208)
292 2qor_A Guanylate kinase; phosp 92.9 0.044 1.5E-06 50.9 2.6 23 342-364 14-36 (204)
293 2jeo_A Uridine-cytidine kinase 92.9 0.049 1.7E-06 52.2 3.0 31 333-363 18-48 (245)
294 2pze_A Cystic fibrosis transme 92.9 0.037 1.3E-06 53.2 2.1 31 334-364 28-58 (229)
295 2bbw_A Adenylate kinase 4, AK4 92.9 0.047 1.6E-06 52.3 2.7 21 341-361 28-48 (246)
296 2if2_A Dephospho-COA kinase; a 92.8 0.045 1.5E-06 50.4 2.5 21 342-362 3-23 (204)
297 4g1u_C Hemin import ATP-bindin 92.8 0.037 1.3E-06 54.6 2.0 30 335-364 32-61 (266)
298 3gfo_A Cobalt import ATP-bindi 92.8 0.037 1.3E-06 55.0 2.0 31 334-364 28-58 (275)
299 4a74_A DNA repair and recombin 92.8 0.042 1.4E-06 51.0 2.2 22 342-363 27-48 (231)
300 1ly1_A Polynucleotide kinase; 92.7 0.051 1.7E-06 48.4 2.7 21 342-362 4-24 (181)
301 3lnc_A Guanylate kinase, GMP k 92.7 0.037 1.3E-06 52.4 1.8 30 335-364 22-52 (231)
302 1sgw_A Putative ABC transporte 92.7 0.038 1.3E-06 52.9 1.9 30 335-364 30-59 (214)
303 2d2e_A SUFC protein; ABC-ATPas 92.7 0.042 1.4E-06 53.5 2.2 29 335-363 24-52 (250)
304 1nks_A Adenylate kinase; therm 92.6 0.052 1.8E-06 48.8 2.6 23 341-363 2-24 (194)
305 1cke_A CK, MSSA, protein (cyti 92.6 0.057 1.9E-06 50.4 2.9 23 341-363 6-28 (227)
306 3uie_A Adenylyl-sulfate kinase 92.6 0.051 1.8E-06 50.3 2.6 24 340-363 25-48 (200)
307 2i3b_A HCR-ntpase, human cance 92.6 0.052 1.8E-06 50.8 2.6 23 342-364 3-25 (189)
308 3nh6_A ATP-binding cassette SU 92.5 0.04 1.4E-06 55.7 1.8 30 334-363 74-103 (306)
309 2qi9_C Vitamin B12 import ATP- 92.5 0.045 1.5E-06 53.5 2.1 29 335-363 21-49 (249)
310 2zu0_C Probable ATP-dependent 92.5 0.046 1.6E-06 53.9 2.1 23 341-363 47-69 (267)
311 2ghi_A Transport protein; mult 92.4 0.044 1.5E-06 53.8 1.9 31 334-364 40-70 (260)
312 3t61_A Gluconokinase; PSI-biol 92.4 0.057 1.9E-06 49.8 2.6 23 341-363 19-41 (202)
313 2ixe_A Antigen peptide transpo 92.4 0.044 1.5E-06 54.2 1.9 31 334-364 39-69 (271)
314 1vpl_A ABC transporter, ATP-bi 92.3 0.046 1.6E-06 53.6 2.0 28 337-364 38-65 (256)
315 3ec2_A DNA replication protein 92.3 0.057 1.9E-06 48.8 2.5 23 341-363 39-61 (180)
316 1via_A Shikimate kinase; struc 92.3 0.062 2.1E-06 48.4 2.6 23 341-363 5-27 (175)
317 1qhx_A CPT, protein (chloramph 92.3 0.063 2.2E-06 48.1 2.7 22 342-363 5-26 (178)
318 2eyu_A Twitching motility prot 92.3 0.059 2E-06 52.9 2.7 23 341-363 26-48 (261)
319 2nq2_C Hypothetical ABC transp 92.2 0.05 1.7E-06 53.2 2.0 30 335-364 26-55 (253)
320 2jaq_A Deoxyguanosine kinase; 92.2 0.07 2.4E-06 48.5 2.8 22 342-363 2-23 (205)
321 2f1r_A Molybdopterin-guanine d 92.1 0.032 1.1E-06 51.5 0.5 23 341-363 3-25 (171)
322 1jjv_A Dephospho-COA kinase; P 92.1 0.068 2.3E-06 49.3 2.7 21 342-362 4-24 (206)
323 2yz2_A Putative ABC transporte 92.0 0.053 1.8E-06 53.3 1.9 30 335-364 28-57 (266)
324 3tui_C Methionine import ATP-b 91.9 0.084 2.9E-06 54.8 3.4 30 335-364 49-78 (366)
325 3fvq_A Fe(3+) IONS import ATP- 91.9 0.09 3.1E-06 54.4 3.6 24 341-364 31-54 (359)
326 1lw7_A Transcriptional regulat 91.9 0.062 2.1E-06 54.9 2.3 24 340-363 170-193 (365)
327 3aez_A Pantothenate kinase; tr 91.8 0.069 2.4E-06 53.9 2.6 23 341-363 91-113 (312)
328 2pjz_A Hypothetical protein ST 91.8 0.058 2E-06 53.2 2.0 30 333-363 24-53 (263)
329 1kht_A Adenylate kinase; phosp 91.7 0.081 2.8E-06 47.6 2.6 21 342-362 5-25 (192)
330 1y63_A LMAJ004144AAA protein; 91.5 0.086 2.9E-06 48.1 2.7 23 341-363 11-33 (184)
331 2rhm_A Putative kinase; P-loop 91.5 0.077 2.6E-06 47.9 2.3 22 342-363 7-28 (193)
332 3trf_A Shikimate kinase, SK; a 91.4 0.093 3.2E-06 47.3 2.8 23 341-363 6-28 (185)
333 3cm0_A Adenylate kinase; ATP-b 91.4 0.093 3.2E-06 47.3 2.7 21 342-362 6-26 (186)
334 2kjq_A DNAA-related protein; s 91.2 0.085 2.9E-06 47.2 2.3 22 342-363 38-59 (149)
335 2qt1_A Nicotinamide riboside k 91.1 0.097 3.3E-06 48.4 2.6 23 341-363 22-44 (207)
336 1xjc_A MOBB protein homolog; s 91.1 0.11 3.7E-06 48.2 2.9 24 340-363 4-27 (169)
337 3n70_A Transport activator; si 91.0 0.52 1.8E-05 41.3 7.2 24 341-364 25-48 (145)
338 3fb4_A Adenylate kinase; psych 90.9 0.11 3.7E-06 48.2 2.8 22 342-363 2-23 (216)
339 2plr_A DTMP kinase, probable t 90.9 0.11 3.6E-06 47.6 2.7 22 342-363 6-27 (213)
340 2gza_A Type IV secretion syste 90.8 0.089 3.1E-06 54.0 2.3 31 333-363 168-198 (361)
341 1z47_A CYSA, putative ABC-tran 90.8 0.088 3E-06 54.4 2.2 32 333-364 34-65 (355)
342 4ido_A Atlastin-1; GTPase, GTP 90.8 0.28 9.5E-06 52.4 6.1 23 339-361 66-88 (457)
343 3dl0_A Adenylate kinase; phosp 90.7 0.12 3.9E-06 48.1 2.8 22 342-363 2-23 (216)
344 2pt7_A CAG-ALFA; ATPase, prote 90.7 0.09 3.1E-06 53.4 2.1 32 333-364 164-195 (330)
345 2bbs_A Cystic fibrosis transme 90.7 0.077 2.6E-06 53.1 1.6 30 335-364 59-88 (290)
346 1ixz_A ATP-dependent metallopr 90.6 0.11 3.8E-06 49.5 2.7 22 342-363 51-72 (254)
347 2yvu_A Probable adenylyl-sulfa 90.6 0.12 4E-06 47.0 2.7 22 342-363 15-36 (186)
348 1tev_A UMP-CMP kinase; ploop, 90.6 0.12 4.1E-06 46.5 2.7 22 342-363 5-26 (196)
349 2x8a_A Nuclear valosin-contain 90.6 0.11 3.8E-06 51.1 2.6 22 342-363 46-67 (274)
350 2yyz_A Sugar ABC transporter, 90.6 0.092 3.2E-06 54.3 2.1 30 335-364 24-53 (359)
351 2w0m_A SSO2452; RECA, SSPF, un 90.5 0.12 4E-06 47.8 2.6 22 342-363 25-46 (235)
352 2it1_A 362AA long hypothetical 90.5 0.096 3.3E-06 54.2 2.1 31 334-364 23-53 (362)
353 2v54_A DTMP kinase, thymidylat 90.5 0.13 4.3E-06 47.0 2.7 22 342-363 6-27 (204)
354 3iij_A Coilin-interacting nucl 90.5 0.13 4.5E-06 46.3 2.8 23 341-363 12-34 (180)
355 1sq5_A Pantothenate kinase; P- 90.4 0.1 3.5E-06 52.1 2.3 23 341-363 81-103 (308)
356 3rlf_A Maltose/maltodextrin im 90.4 0.097 3.3E-06 54.6 2.1 30 335-364 24-53 (381)
357 2pez_A Bifunctional 3'-phospho 90.4 0.13 4.3E-06 46.5 2.7 22 342-363 7-28 (179)
358 2pt5_A Shikimate kinase, SK; a 90.4 0.14 4.7E-06 45.4 2.9 22 342-363 2-23 (168)
359 1rz3_A Hypothetical protein rb 90.4 0.11 3.8E-06 48.2 2.3 22 341-362 23-44 (201)
360 1aky_A Adenylate kinase; ATP:A 90.3 0.14 4.6E-06 47.9 2.9 23 341-363 5-27 (220)
361 1g29_1 MALK, maltose transport 90.3 0.1 3.5E-06 54.2 2.2 30 335-364 24-53 (372)
362 3nwj_A ATSK2; P loop, shikimat 90.3 0.12 4.1E-06 50.6 2.6 30 333-362 38-70 (250)
363 1v43_A Sugar-binding transport 90.3 0.1 3.5E-06 54.2 2.1 30 335-364 32-61 (372)
364 2pbr_A DTMP kinase, thymidylat 90.3 0.13 4.4E-06 46.3 2.6 21 342-362 2-22 (195)
365 1e6c_A Shikimate kinase; phosp 90.3 0.14 4.7E-06 45.5 2.7 23 341-363 3-25 (173)
366 3jvv_A Twitching mobility prot 90.1 0.12 4.2E-06 53.2 2.6 22 342-363 125-146 (356)
367 2z0h_A DTMP kinase, thymidylat 90.1 0.13 4.6E-06 46.5 2.6 22 342-363 2-23 (197)
368 3a4m_A L-seryl-tRNA(SEC) kinas 90.1 0.15 5.2E-06 49.4 3.1 24 340-363 4-27 (260)
369 2c95_A Adenylate kinase 1; tra 90.1 0.12 4.3E-06 46.7 2.3 23 341-363 10-32 (196)
370 4e22_A Cytidylate kinase; P-lo 90.0 0.14 4.8E-06 49.5 2.7 21 341-361 28-48 (252)
371 1gtv_A TMK, thymidylate kinase 90.0 0.057 2E-06 49.8 -0.1 22 342-363 2-23 (214)
372 2bwj_A Adenylate kinase 5; pho 89.8 0.13 4.3E-06 46.7 2.1 24 340-363 12-35 (199)
373 2npi_A Protein CLP1; CLP1-PCF1 89.8 0.13 4.4E-06 54.9 2.4 29 335-363 133-161 (460)
374 2ewv_A Twitching motility prot 89.7 0.14 4.7E-06 52.9 2.6 23 341-363 137-159 (372)
375 3b9q_A Chloroplast SRP recepto 89.7 0.14 4.9E-06 51.3 2.6 23 341-363 101-123 (302)
376 2wwf_A Thymidilate kinase, put 89.7 0.13 4.6E-06 47.2 2.2 22 342-363 12-33 (212)
377 1iy2_A ATP-dependent metallopr 89.6 0.15 5.1E-06 49.6 2.7 22 342-363 75-96 (278)
378 3kta_A Chromosome segregation 89.6 0.15 5E-06 46.0 2.4 22 342-363 28-49 (182)
379 3gd7_A Fusion complex of cysti 89.6 0.11 3.7E-06 54.3 1.7 31 333-363 40-70 (390)
380 2iyv_A Shikimate kinase, SK; t 89.5 0.15 5.3E-06 45.9 2.5 22 342-363 4-25 (184)
381 1zd8_A GTP:AMP phosphotransfer 89.5 0.15 5.2E-06 47.9 2.6 23 341-363 8-30 (227)
382 2vli_A Antibiotic resistance p 89.5 0.13 4.6E-06 46.0 2.1 22 342-363 7-28 (183)
383 2vp4_A Deoxynucleoside kinase; 89.5 0.12 4.2E-06 49.0 1.9 22 342-363 22-43 (230)
384 1e4v_A Adenylate kinase; trans 89.5 0.15 5.1E-06 47.5 2.4 22 342-363 2-23 (214)
385 2cdn_A Adenylate kinase; phosp 89.4 0.17 5.8E-06 46.5 2.7 22 342-363 22-43 (201)
386 1nn5_A Similar to deoxythymidy 89.4 0.15 5.1E-06 46.9 2.3 22 342-363 11-32 (215)
387 3d31_A Sulfate/molybdate ABC t 89.3 0.092 3.1E-06 54.0 0.9 31 334-364 20-50 (348)
388 1qf9_A UMP/CMP kinase, protein 89.3 0.15 5.2E-06 45.7 2.2 23 341-363 7-29 (194)
389 1jbk_A CLPB protein; beta barr 89.2 0.18 6.1E-06 44.4 2.6 23 341-363 44-66 (195)
390 2yl4_A ATP-binding cassette SU 89.2 0.17 5.8E-06 55.2 3.0 31 334-364 364-394 (595)
391 1zak_A Adenylate kinase; ATP:A 89.2 0.15 5.2E-06 47.7 2.3 23 341-363 6-28 (222)
392 1cr0_A DNA primase/helicase; R 89.2 0.15 5.1E-06 50.0 2.2 28 336-363 31-58 (296)
393 3tqc_A Pantothenate kinase; bi 89.0 0.17 5.9E-06 51.4 2.7 22 342-363 94-115 (321)
394 1n0w_A DNA repair protein RAD5 89.0 0.18 6.3E-06 47.1 2.7 22 342-363 26-47 (243)
395 1in4_A RUVB, holliday junction 89.0 0.17 5.9E-06 50.8 2.6 23 341-363 52-74 (334)
396 1ukz_A Uridylate kinase; trans 88.9 0.2 6.8E-06 45.9 2.8 23 341-363 16-38 (203)
397 2oap_1 GSPE-2, type II secreti 88.8 0.16 5.5E-06 54.8 2.4 31 334-364 254-284 (511)
398 3b60_A Lipid A export ATP-bind 88.8 0.17 5.9E-06 55.1 2.6 31 333-363 362-392 (582)
399 3qf4_B Uncharacterized ABC tra 88.8 0.2 6.8E-06 54.8 3.2 31 334-364 375-405 (598)
400 1oxx_K GLCV, glucose, ABC tran 88.8 0.083 2.8E-06 54.4 0.1 31 334-364 25-55 (353)
401 1zuh_A Shikimate kinase; alpha 88.8 0.22 7.5E-06 44.3 2.9 24 340-363 7-30 (168)
402 2cvh_A DNA repair and recombin 88.6 0.2 6.8E-06 46.1 2.6 21 342-362 22-42 (220)
403 1xwi_A SKD1 protein; VPS4B, AA 88.6 1.2 3.9E-05 44.7 8.4 23 341-363 46-68 (322)
404 1p9r_A General secretion pathw 88.5 0.19 6.3E-06 53.0 2.6 23 342-364 169-191 (418)
405 1uf9_A TT1252 protein; P-loop, 88.5 0.18 6.3E-06 45.8 2.3 23 341-363 9-31 (203)
406 4b4t_L 26S protease subunit RP 88.4 0.74 2.5E-05 48.8 7.1 24 340-363 215-238 (437)
407 1gvn_B Zeta; postsegregational 88.3 0.2 6.9E-06 49.6 2.6 22 342-363 35-56 (287)
408 2xb4_A Adenylate kinase; ATP-b 88.2 0.24 8.3E-06 46.7 2.9 22 342-363 2-23 (223)
409 1odf_A YGR205W, hypothetical 3 88.1 0.22 7.4E-06 49.7 2.7 23 341-363 32-54 (290)
410 1vht_A Dephospho-COA kinase; s 88.1 0.26 8.9E-06 45.8 3.0 21 342-362 6-26 (218)
411 4a82_A Cystic fibrosis transme 88.1 0.17 5.9E-06 55.0 2.1 31 333-363 360-390 (578)
412 3euj_A Chromosome partition pr 88.0 0.18 6.1E-06 54.2 2.1 29 334-363 24-52 (483)
413 3tlx_A Adenylate kinase 2; str 88.0 0.3 1E-05 46.8 3.5 25 339-363 28-52 (243)
414 2ze6_A Isopentenyl transferase 88.0 0.26 8.8E-06 47.8 3.0 22 342-363 3-24 (253)
415 1yqt_A RNAse L inhibitor; ATP- 87.9 0.22 7.6E-06 53.9 2.8 23 342-364 49-71 (538)
416 2obl_A ESCN; ATPase, hydrolase 87.9 0.21 7.3E-06 51.1 2.5 30 335-364 66-95 (347)
417 1m7g_A Adenylylsulfate kinase; 87.9 0.28 9.6E-06 45.6 3.1 28 336-363 21-48 (211)
418 3ozx_A RNAse L inhibitor; ATP 87.8 0.22 7.4E-06 54.1 2.6 23 342-364 27-49 (538)
419 3be4_A Adenylate kinase; malar 87.7 0.23 8E-06 46.4 2.5 23 341-363 6-28 (217)
420 3b5x_A Lipid A export ATP-bind 87.6 0.21 7E-06 54.4 2.2 31 334-364 363-393 (582)
421 2og2_A Putative signal recogni 87.6 0.23 7.9E-06 51.3 2.5 23 341-363 158-180 (359)
422 2p5t_B PEZT; postsegregational 87.5 0.18 6.3E-06 48.6 1.6 23 341-363 33-55 (253)
423 1lv7_A FTSH; alpha/beta domain 87.4 0.26 8.9E-06 47.0 2.6 23 341-363 46-68 (257)
424 1ak2_A Adenylate kinase isoenz 87.3 0.29 9.9E-06 46.3 2.9 23 341-363 17-39 (233)
425 3qf4_A ABC transporter, ATP-bi 87.1 0.23 7.8E-06 54.3 2.3 31 333-363 362-392 (587)
426 3j16_B RLI1P; ribosome recycli 87.0 0.27 9.2E-06 54.2 2.8 23 342-364 105-127 (608)
427 4eaq_A DTMP kinase, thymidylat 86.9 0.29 9.8E-06 46.8 2.6 24 341-364 27-50 (229)
428 3bos_A Putative DNA replicatio 86.7 0.31 1E-05 45.0 2.6 24 340-363 52-75 (242)
429 2p65_A Hypothetical protein PF 86.4 0.25 8.4E-06 43.6 1.8 24 340-363 43-66 (187)
430 1ltq_A Polynucleotide kinase; 86.4 0.32 1.1E-05 47.5 2.7 21 342-362 4-24 (301)
431 1svm_A Large T antigen; AAA+ f 86.1 0.33 1.1E-05 50.4 2.8 23 341-363 170-192 (377)
432 3qf7_A RAD50; ABC-ATPase, ATPa 86.0 0.33 1.1E-05 49.7 2.7 21 342-362 25-45 (365)
433 2w58_A DNAI, primosome compone 86.0 0.35 1.2E-05 44.2 2.6 23 341-363 55-77 (202)
434 1f2t_A RAD50 ABC-ATPase; DNA d 86.0 0.37 1.3E-05 42.9 2.7 21 342-362 25-45 (149)
435 2dpy_A FLII, flagellum-specifi 86.0 0.31 1.1E-05 51.6 2.5 30 335-364 152-181 (438)
436 3bk7_A ABC transporter ATP-bin 86.0 0.31 1.1E-05 53.7 2.6 23 342-364 119-141 (607)
437 1qhl_A Protein (cell division 85.9 0.13 4.4E-06 49.8 -0.4 23 342-364 29-51 (227)
438 3u61_B DNA polymerase accessor 85.9 1.6 5.4E-05 42.9 7.5 42 420-464 105-147 (324)
439 3ozx_A RNAse L inhibitor; ATP 85.9 0.32 1.1E-05 52.8 2.6 23 342-364 296-318 (538)
440 3vfd_A Spastin; ATPase, microt 85.8 1.2 4.3E-05 45.4 6.9 23 341-363 149-171 (389)
441 3sr0_A Adenylate kinase; phosp 85.7 0.39 1.3E-05 45.5 2.8 22 342-363 2-23 (206)
442 1njg_A DNA polymerase III subu 85.6 0.37 1.3E-05 43.8 2.6 22 342-363 47-68 (250)
443 1uj2_A Uridine-cytidine kinase 85.5 0.42 1.4E-05 45.8 3.0 23 341-363 23-45 (252)
444 1yqt_A RNAse L inhibitor; ATP- 85.4 0.36 1.2E-05 52.2 2.8 24 342-365 314-337 (538)
445 4f4c_A Multidrug resistance pr 85.4 0.27 9.4E-06 58.8 2.0 29 335-363 1100-1128(1321)
446 3ake_A Cytidylate kinase; CMP 85.3 0.4 1.4E-05 43.7 2.6 22 342-363 4-25 (208)
447 2grj_A Dephospho-COA kinase; T 85.2 0.4 1.4E-05 44.8 2.6 23 341-363 13-35 (192)
448 2zan_A Vacuolar protein sortin 85.2 1.6 5.4E-05 45.8 7.5 23 341-363 168-190 (444)
449 1nlf_A Regulatory protein REPA 84.9 0.36 1.2E-05 46.9 2.2 21 342-362 32-52 (279)
450 3bk7_A ABC transporter ATP-bin 84.6 0.41 1.4E-05 52.7 2.8 23 342-364 384-406 (607)
451 2chg_A Replication factor C sm 84.6 0.45 1.5E-05 42.8 2.6 23 341-363 39-61 (226)
452 3j16_B RLI1P; ribosome recycli 84.1 0.45 1.6E-05 52.4 2.8 24 342-365 380-403 (608)
453 3pxi_A Negative regulator of g 83.9 3.7 0.00013 45.8 10.1 22 342-363 523-544 (758)
454 1q3t_A Cytidylate kinase; nucl 83.8 0.52 1.8E-05 44.6 2.8 21 342-362 18-38 (236)
455 3b9p_A CG5977-PA, isoform A; A 83.8 0.48 1.6E-05 46.0 2.6 23 341-363 55-77 (297)
456 2qz4_A Paraplegin; AAA+, SPG7, 83.7 0.51 1.8E-05 44.6 2.7 23 341-363 40-62 (262)
457 2qby_A CDC6 homolog 1, cell di 83.7 0.57 2E-05 46.4 3.2 23 341-363 46-68 (386)
458 2f6r_A COA synthase, bifunctio 83.6 0.45 1.6E-05 46.8 2.3 22 341-362 76-97 (281)
459 2dr3_A UPF0273 protein PH0284; 83.6 0.47 1.6E-05 44.2 2.4 21 342-362 25-45 (247)
460 2iw3_A Elongation factor 3A; a 83.5 0.55 1.9E-05 54.6 3.3 30 335-364 694-723 (986)
461 4b4t_H 26S protease regulatory 83.5 1.6 5.4E-05 46.7 6.6 25 339-363 242-266 (467)
462 3zvl_A Bifunctional polynucleo 83.4 0.52 1.8E-05 49.2 2.8 22 342-363 260-281 (416)
463 3h4m_A Proteasome-activating n 83.4 0.51 1.8E-05 45.4 2.6 24 340-363 51-74 (285)
464 3umf_A Adenylate kinase; rossm 83.0 0.61 2.1E-05 44.7 2.9 22 342-363 31-52 (217)
465 3r20_A Cytidylate kinase; stru 83.0 0.58 2E-05 45.4 2.7 23 341-363 10-32 (233)
466 1ojl_A Transcriptional regulat 82.8 1.7 5.8E-05 43.1 6.1 24 341-364 26-49 (304)
467 1sxj_E Activator 1 40 kDa subu 82.7 0.48 1.6E-05 47.1 2.1 24 340-363 36-59 (354)
468 3cf0_A Transitional endoplasmi 82.5 0.65 2.2E-05 45.8 3.0 23 341-363 50-72 (301)
469 1fnn_A CDC6P, cell division co 82.4 0.63 2.2E-05 46.4 2.9 22 342-363 46-67 (389)
470 1sxj_D Activator 1 41 kDa subu 82.4 0.81 2.8E-05 45.1 3.6 23 341-363 59-81 (353)
471 1sxj_C Activator 1 40 kDa subu 82.2 0.62 2.1E-05 46.5 2.7 25 339-363 45-69 (340)
472 4f4c_A Multidrug resistance pr 82.0 0.59 2E-05 56.0 2.8 31 333-363 437-467 (1321)
473 3g5u_A MCG1178, multidrug resi 81.8 0.62 2.1E-05 55.6 2.9 32 333-364 409-440 (1284)
474 1l8q_A Chromosomal replication 81.8 0.63 2.2E-05 46.0 2.6 23 341-363 38-60 (324)
475 2r62_A Cell division protease 81.7 0.54 1.8E-05 44.9 1.9 22 342-363 46-67 (268)
476 1zcb_A G alpha I/13; GTP-bindi 81.4 0.73 2.5E-05 47.4 3.0 24 338-361 31-54 (362)
477 1p5z_B DCK, deoxycytidine kina 81.4 0.57 2E-05 45.1 2.1 24 340-363 24-47 (263)
478 3qks_A DNA double-strand break 81.4 0.73 2.5E-05 43.1 2.7 20 342-361 25-44 (203)
479 3cr8_A Sulfate adenylyltranfer 81.4 0.39 1.3E-05 52.3 0.9 23 341-363 370-392 (552)
480 3gmt_A Adenylate kinase; ssgci 81.3 0.76 2.6E-05 44.6 2.8 23 341-363 9-31 (230)
481 1pzn_A RAD51, DNA repair and r 80.9 0.63 2.1E-05 47.4 2.2 23 341-363 132-154 (349)
482 4fcw_A Chaperone protein CLPB; 80.8 0.74 2.5E-05 44.7 2.6 23 341-363 48-70 (311)
483 1ofh_A ATP-dependent HSL prote 80.6 0.77 2.6E-05 44.3 2.7 23 341-363 51-73 (310)
484 3t15_A Ribulose bisphosphate c 80.0 0.72 2.5E-05 45.5 2.3 22 342-363 38-59 (293)
485 2ga8_A Hypothetical 39.9 kDa p 79.9 1 3.4E-05 46.7 3.4 24 340-363 24-47 (359)
486 1e69_A Chromosome segregation 79.8 0.77 2.6E-05 45.9 2.4 21 342-362 26-46 (322)
487 3ux8_A Excinuclease ABC, A sub 79.8 0.48 1.6E-05 52.4 1.0 28 334-361 342-369 (670)
488 4edh_A DTMP kinase, thymidylat 79.6 0.8 2.7E-05 43.4 2.4 22 342-363 8-29 (213)
489 2ocp_A DGK, deoxyguanosine kin 79.6 0.78 2.7E-05 43.4 2.3 22 342-363 4-25 (241)
490 4aby_A DNA repair protein RECN 79.5 0.24 8.3E-06 50.7 -1.4 27 335-362 56-82 (415)
491 3syl_A Protein CBBX; photosynt 79.5 0.77 2.6E-05 44.6 2.3 22 342-363 69-90 (309)
492 2v1u_A Cell division control p 79.3 0.84 2.9E-05 45.3 2.5 24 340-363 44-67 (387)
493 2h92_A Cytidylate kinase; ross 79.2 0.94 3.2E-05 41.8 2.7 22 342-363 5-26 (219)
494 2iw3_A Elongation factor 3A; a 79.2 0.69 2.4E-05 53.8 2.1 24 340-363 461-484 (986)
495 1tf7_A KAIC; homohexamer, hexa 79.2 0.75 2.6E-05 49.3 2.2 20 343-362 42-63 (525)
496 1d2n_A N-ethylmaleimide-sensit 79.2 0.9 3.1E-05 43.7 2.6 24 340-363 64-87 (272)
497 1tue_A Replication protein E1; 79.0 0.73 2.5E-05 44.3 1.9 22 342-363 60-81 (212)
498 3m6a_A ATP-dependent protease 78.5 0.89 3E-05 49.1 2.6 22 342-363 110-131 (543)
499 2qmh_A HPR kinase/phosphorylas 78.0 1.1 3.8E-05 42.9 2.8 22 342-363 36-57 (205)
500 1a7j_A Phosphoribulokinase; tr 78.0 0.72 2.5E-05 45.8 1.5 21 342-362 7-27 (290)
No 1
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=100.00 E-value=1.6e-81 Score=650.37 Aligned_cols=329 Identities=51% Similarity=0.874 Sum_probs=307.8
Q ss_pred ceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCC
Q 046233 183 RCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGA 262 (518)
Q Consensus 183 ~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~ 262 (518)
+|+|+++|+|+||+||+||+|||||||+|+|||||||||+||||||+++++++||++|++++||+|+||++|++++|+|+
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~~~r~~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~~~~~~~~a~~g~~g~~~~~~g~ 80 (342)
T 1lnz_A 1 MFVDQVKVYVKGGDGGNGMVAFRREKYVPKGGPAGGDGGKGGDVVFEVDEGLRTLMDFRYKKHFKAIRGEHGMSKNQHGR 80 (342)
T ss_dssp CEEEEEEEEEECCCCCCCCCCBCCCSSSCCCCBCCCCCCCCCCEEEEECTTCCCSCGGGTCCEEECCCCCCCCSTTCCCC
T ss_pred CCcceEEEEEEecCCCCceeeeehhhcccCCCCCCCCCCCCCeEEEEeCCCcChHHHhCccceEEcCCCCCCCCCCCcCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheecee
Q 046233 263 KGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVAD 342 (518)
Q Consensus 263 ~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia~ 342 (518)
+|+|++|+||+||+|+|.+++++|+||+.++|++++|+||+||+||++|+++++++|+++++|++|+++++.+|||.+++
T Consensus 81 ~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~ 160 (342)
T 1lnz_A 81 NADDMVIKVPPGTVVTDDDTKQVIADLTEHGQRAVIARGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLAD 160 (342)
T ss_dssp CCCCEEEEECTTEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCC
T ss_pred CCCCEEEEcCCccEEEeCCCCcEehhhhcCCcEEEEeCCCCCccCccccccccccccccccCCCCcchhhHhhhhhhcCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCce
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSAL 422 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvl 422 (518)
|+|||.|||||||||++|+++++.+++|+|+|+.|+++.+.++....++||||||++++++...++++.|++|+++|+++
T Consensus 161 V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~l 240 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVI 240 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEE
T ss_pred eeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEE
Confidence 99999999999999999999999999999999999999999886579999999999998888889999999999999999
Q ss_pred EEEEeCCC---CCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 423 VHVIDGSA---EQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 423 L~VVDaS~---~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|||||+++ .+++.++..|..+|..+.+.+..+|++||+||+|+....+..+.+.+.+.. .+++++|||+++.|+++
T Consensus 241 l~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~-~~~v~~iSA~tg~gi~e 319 (342)
T 1lnz_A 241 VHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD-DYPVFPISAVTREGLRE 319 (342)
T ss_dssp EEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS-CCCBCCCSSCCSSTTHH
T ss_pred EEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc-CCCEEEEECCCCcCHHH
Confidence 99999998 788899999999999988777889999999999998654333333333221 16899999999999999
Q ss_pred HHHHHHHHHHhhh
Q 046233 500 VISAAYQLLQKNK 512 (518)
Q Consensus 500 L~~~L~e~L~~~~ 512 (518)
|+.+|.+.+....
T Consensus 320 L~~~l~~~l~~~~ 332 (342)
T 1lnz_A 320 LLFEVANQLENTP 332 (342)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhhCc
Confidence 9999999987654
No 2
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=100.00 E-value=7.5e-75 Score=614.79 Aligned_cols=327 Identities=44% Similarity=0.751 Sum_probs=307.2
Q ss_pred ceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCC
Q 046233 183 RCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGA 262 (518)
Q Consensus 183 ~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~ 262 (518)
+|+|+++|+|+||+||+||+|||||||+|+|||||||||+||||||+++++++||++| +++||+|+||++|++++|+|+
T Consensus 1 ~f~d~~~i~~~~g~gg~g~~~f~re~~~~~ggp~gg~gg~gg~v~~~~~~~~~~l~~~-~~~~~~a~~g~~g~~~~~~g~ 79 (416)
T 1udx_A 1 MFQDVLVITVAAGRGGDGAVSFRREKFVPKGGPDGGDGGRGGSVYLRARGSVDSLSRL-SKRTYKAEDGEHGRGSQQHGR 79 (416)
T ss_dssp CCCSEEEEEEECCCCCCCCCCBCCBTTBSCCCBCCCCCCCCCCEEEEECTTCCSSTTS-CSSCEECCCCCCCBTTTBCCC
T ss_pred CCcceEEEEEEecCCCCceeeeeccccccCCCCCCCCCCCCCeEEEEeCCCcCchhhh-hhceEEcCCCCCCCCCCCcCC
Confidence 4999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCEEEEecCccEEEecccCcEEecccCCCcEEEEcCCCCCCCCCCCCCCCCCCCCccccCCCCCchhhhhhhheecee
Q 046233 263 KGQDVVVKVAPGTVIREAGKSKVLLELLVPGQKALLLPGGRGGRGNASFKSGTNKVPRIAENGEEGPEMWLELELKLVAD 342 (518)
Q Consensus 263 ~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g~~~l~a~GG~GG~Gn~~fks~~n~~P~~~~~G~~Ge~~~l~lELK~ia~ 342 (518)
+|+|++|+||+||+|++.+++++|+||+.++|++++|+||+||+||++|+++++++|+++++|++|+++.+.++++..++
T Consensus 80 ~g~d~~~~vp~gt~v~~~~~~~~~~dl~~~~~~~~~~~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~ 159 (416)
T 1udx_A 80 GGEDLVIEVPRGTRVFDADTGELLADLTEEGQTVLVARGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIAD 159 (416)
T ss_dssp CCCCEEEEECSSEEEEETTTCCEEEEECSTTCEEEEECCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCS
T ss_pred CCCCEEEecCCccEEEecCCCcEEeeccCCCceEEEecCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCce
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSAL 422 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvl 422 (518)
|+|||++||||||||++|++..+.+++|+|+|+.|+++.+.++....+++||+||+++.++...+++..|++++++|+.+
T Consensus 160 VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~l 239 (416)
T 1udx_A 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVL 239 (416)
T ss_dssp EEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEE
T ss_pred EEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998875578999999999998888888989999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHH
Q 046233 423 VHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 423 L~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~ 502 (518)
|+|+|++ ..+..++..+..++..+...+..+|.|+|+||+|+... ..++.+.+.+...+++++++||++++|+++|++
T Consensus 240 L~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 240 LYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp EEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred hEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 9999998 67888888888888877665667999999999999876 555666666766678999999999999999999
Q ss_pred HHHHHHHhhh
Q 046233 503 AAYQLLQKNK 512 (518)
Q Consensus 503 ~L~e~L~~~~ 512 (518)
+|.+.+....
T Consensus 318 ~i~~~l~~~~ 327 (416)
T 1udx_A 318 ALHALVRSTP 327 (416)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHhcc
Confidence 9999997653
No 3
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.96 E-value=7.2e-32 Score=290.61 Aligned_cols=283 Identities=21% Similarity=0.221 Sum_probs=208.7
Q ss_pred ceeeeEEEEEEeCCCCCCcccccccccCCCCCCCCCCCCCCccEEEEEcCCCCccccCCCcceEEcCCCCCCCCCCCCCC
Q 046233 183 RCFDRAKIFVKAGTGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNSVHFRAGRGSHGQGRMQSGA 262 (518)
Q Consensus 183 ~f~D~~~i~v~~G~GG~G~~sf~r~k~~~~ggP~GG~GG~GG~V~~~~~~~~~~l~~~~~~~~~~a~~G~~G~~~~~~G~ 262 (518)
+|+|++.|.+..| +.||+||+++|++ ||||.|+++ ..+++|+++. ...|+.|+.++...++|+
T Consensus 87 ~~iDe~~v~~~~~-----p~Sft~Ed~ve~~-------~hGg~~v~~--~~l~~l~~~g---~r~A~~Geft~raf~nGk 149 (482)
T 1xzp_A 87 EDVDEVVVVFYKS-----PKSYTGEDMVEVM-------CHGGPLVVK--KLLDLFLKSG---ARMAEPGEFTKRAFLNGK 149 (482)
T ss_dssp CCCCEEEEEEECT-----TSSSSSSCEEEEE-------ECSCHHHHH--HHHHHHHTTT---CEECCTTHHHHHHHHTTS
T ss_pred eeeeEEEEEEEeC-----CCcCCCCCEeeec-------CcCcHHHHH--HHHHHHHHcC---CEeCCCCCcCCcCCCcCC
Confidence 3889999999997 9999999999997 899999976 5588898873 467888887766666666
Q ss_pred CCCCEEEEecCccEEEecccCcEEecccCCC---cEEEEcCCCCCCCCCCC---------CCCCCCCCCccccCCCCC--
Q 046233 263 KGQDVVVKVAPGTVIREAGKSKVLLELLVPG---QKALLLPGGRGGRGNAS---------FKSGTNKVPRIAENGEEG-- 328 (518)
Q Consensus 263 ~g~d~~i~VP~GT~v~~~~~~~~~~dl~~~g---~~~l~a~GG~GG~Gn~~---------fks~~n~~P~~~~~G~~G-- 328 (518)
.|....+.++||.... +..+.++++.|+.++.. +....+..+.+++. -++
T Consensus 150 ---------------~Dl~qaE~i~dli~a~t~~~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i~~~~ 213 (482)
T 1xzp_A 150 ---------------MDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE-IETNT 213 (482)
T ss_dssp ---------------SCHHHHHHHHHHHHCCSHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-CCCCH
T ss_pred ---------------cCHHHHHHHHHHHhhccHHHHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc-ccchH
Confidence 2555567889998654 34467888888877642 11111112222221 121
Q ss_pred -----chhhhhhhheec-------------eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCce
Q 046233 329 -----PEMWLELELKLV-------------ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDST 389 (518)
Q Consensus 329 -----e~~~l~lELK~i-------------a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~ 389 (518)
....+..+|+.+ .+|+|||.||||||||+|+|++... .+.++++||.++....+.++ +..
T Consensus 214 ~~i~~~~~~l~~eL~~l~~~~~~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~-g~~ 292 (482)
T 1xzp_A 214 GEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-GIL 292 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC-CeE
Confidence 123344555544 7999999999999999999999864 57899999999999999886 678
Q ss_pred EEEEcCCCCc-cccccCCCcch-hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 390 MVVADLPGLL-EGAHQGFGLGH-EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 390 l~I~DTPGli-egas~~~gLg~-~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+.||||||+. +.......++. ..+.+++.||++|+|+|++++.+..+.+.+ ..+ ..+|+++|+||+|+..
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-------TTSSEEEEEEECSSCC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-------cCCCEEEEEECccccc
Confidence 9999999998 65544333432 346778899999999999998777665433 222 3689999999999975
Q ss_pred cccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 468 AYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 468 ~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
.. ..+++.+.+. ..+++++|||+++.||++|+++|.+.+.
T Consensus 365 ~~-~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 365 KI-NEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp CC-CHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred cc-CHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 42 2344443332 3468999999999999999999998754
No 4
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.90 E-value=4.9e-23 Score=186.74 Aligned_cols=167 Identities=16% Similarity=0.083 Sum_probs=126.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.+|||||+.... ..+..++.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 80 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYR 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhc
Confidence 4569999999999999999999987766666677777666666666532 579999999975422 22344567
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+.... ...|+++|+||+|+...... ...........+++++++||+++.|
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 7999999999999877777666666665433 46899999999999865433 2444555556688999999999999
Q ss_pred HHHHHHHHHHHHHhhhHhh
Q 046233 497 THEVISAAYQLLQKNKEAE 515 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~~~~ 515 (518)
+++++++|.+.+...+++.
T Consensus 158 i~~l~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 158 VEEMFNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 9999999999987765543
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.90 E-value=6.9e-23 Score=189.19 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=128.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
+...+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.||||||+.... ..+..++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~ 86 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYY 86 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHH
Confidence 34569999999999999999999987766666676677666666766532 479999999975422 2234456
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktge 495 (518)
..+|++|+|+|++++.++..+..|...+..+.. ...|++||+||+|+....... ..........+++++++||+++.
T Consensus 87 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 164 (196)
T 3tkl_A 87 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 164 (196)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCT
T ss_pred hhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 679999999999998777777777777765543 468999999999998654433 44555556668899999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 046233 496 GTHEVISAAYQLLQKNK 512 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~ 512 (518)
|++++|++|.+.+....
T Consensus 165 gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 165 NVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999887643
No 6
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.89 E-value=4.8e-23 Score=184.95 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=117.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+..... + +..+++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~---~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT----I---TTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC----C---CHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh----h---HHHHhccC
Confidence 5899999999999999999998765444445444444445555543 24799999999754221 2 33445679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++|+|+|++++.++..+..|...+..+.. ...|+++|+||+|+.......+...+.....+++++++||+++.|+++
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 154 (170)
T 1g16_A 77 MGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 154 (170)
T ss_dssp EEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999987777777666666654432 468999999999995443334455555566688999999999999999
Q ss_pred HHHHHHHHHHhh
Q 046233 500 VISAAYQLLQKN 511 (518)
Q Consensus 500 L~~~L~e~L~~~ 511 (518)
++.+|.+.+.+.
T Consensus 155 l~~~l~~~~~~~ 166 (170)
T 1g16_A 155 IFFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.89 E-value=5.1e-23 Score=188.41 Aligned_cols=167 Identities=12% Similarity=0.039 Sum_probs=100.2
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+.++.+.....+.++. ...+.||||||+..... + +..+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~ 79 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----I---TTAYYR 79 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh----h---HHHHHh
Confidence 356899999999999999999997655433344444444444555542 25799999999865322 2 334466
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+..+.. .+.|++||+||+|+...... .++..+.....+++++++||+++.|
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 80 GAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157 (183)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 79999999999998777777666666654422 46899999999999764433 3455556666688999999999999
Q ss_pred HHHHHHHHHHHHHhhhHh
Q 046233 497 THEVISAAYQLLQKNKEA 514 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~~~ 514 (518)
|++++.+|.+.+......
T Consensus 158 i~~l~~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 158 VENAFFTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999988765443
No 8
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.89 E-value=2.4e-22 Score=184.47 Aligned_cols=161 Identities=14% Similarity=0.009 Sum_probs=117.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC--------------------------------
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-------------------------------- 387 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-------------------------------- 387 (518)
..+|+|+|.+|||||||+++|++........+.++.......+.++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 358999999999999999999987654322232222333333333211
Q ss_pred ------ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 388 ------STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 388 ------~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
..+.||||||+.... ..+..++..+|++|+|+|++++.++..+..|...+..+. ..|+++|+|
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~N 155 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVAN 155 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEE
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEE
Confidence 579999999975522 223445667999999999999877777776666665442 389999999
Q ss_pred CCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 462 KMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 462 KiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
|+|+.......+++.+.+...+++++++||+++.|+++++++|.+.+.+.
T Consensus 156 K~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 156 KIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99943333345677777777889999999999999999999999887653
No 9
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.89 E-value=3.6e-22 Score=181.10 Aligned_cols=164 Identities=14% Similarity=0.047 Sum_probs=119.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+... ...+..++..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ 79 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFYRG 79 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGGTT
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHHhc
Confidence 46899999999999999999998765444444444444444555542 147999999997552 2233445677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcccchHHHHHHHH-hcCCceEEEeccCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-ARGIEPFCMSAVKRE 495 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-~~g~~i~~ISAktge 495 (518)
+|++++|+|+++..++..+..|...+..+.. .....|+++|+||+|+.......+++.+.+. ..+++++++||+++.
T Consensus 80 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159 (177)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 9999999999998777777666666654321 1246899999999999844334455555555 447899999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 046233 496 GTHEVISAAYQLLQK 510 (518)
Q Consensus 496 GI~eL~~~L~e~L~~ 510 (518)
|+++++++|.+.+..
T Consensus 160 gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 160 NVAAAFEEAVRRVLA 174 (177)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 10
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.89 E-value=3.5e-22 Score=186.32 Aligned_cols=166 Identities=19% Similarity=0.087 Sum_probs=121.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.||||||+..... + +..++..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~ 80 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS----L---GVAFYRG 80 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC----S---CCGGGTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH----h---HHHHHhC
Confidence 468999999999999999999987655444454455555555555432 4799999999755322 2 3344567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcccchHHHHHHHH-hcCCceEEEeccCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-ARGIEPFCMSAVKRE 495 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-~~g~~i~~ISAktge 495 (518)
+|++|+|+|++++.++..+..|..++..... .....|++||+||+|+.......+.+..... ..+++++++||+++.
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAI 160 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 9999999999998777777666665543321 1246899999999999854333445555554 457899999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 046233 496 GTHEVISAAYQLLQKNK 512 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~ 512 (518)
|+++++++|.+.+....
T Consensus 161 gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 161 NVEQAFQTIARNALKQE 177 (207)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886544
No 11
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.89 E-value=2.5e-22 Score=180.83 Aligned_cols=165 Identities=20% Similarity=0.135 Sum_probs=113.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
+.+|+++|.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+...... +...+ +..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~---~~~ 75 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW---LQDHC---LQT 75 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----------CHH---HHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh---hhhhh---hcc
Confidence 45899999999999999999997665555555555555555565553 247889999998653221 22222 455
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|++++.++..+..+...+..... ..+.|+++|+||+|+...... .++..+.....+++++++||+++.|+
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 154 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCH
Confidence 9999999999998887777777666654432 237899999999999854443 34455556666889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|.+.+...
T Consensus 155 ~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 155 RELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=2.2e-22 Score=184.25 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=126.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.+|||||+... ...+..++.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~ 81 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYYR 81 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTST
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHHh
Confidence 3569999999999999999999987765555565565555555665532 47999999997552 233455677
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+..+.. .+.|+++|+||+|+...... ..+..+.....+++++++||+++.|
T Consensus 82 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 82 GAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159 (186)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 89999999999998777777767666655432 46899999999999754332 3455566666788999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 046233 497 THEVISAAYQLLQKNK 512 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~ 512 (518)
++++|++|.+.+....
T Consensus 160 i~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 160 VEEAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998876543
No 13
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.5e-22 Score=183.92 Aligned_cols=165 Identities=14% Similarity=0.055 Sum_probs=121.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+.... ..+..++..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 87 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-------TLTPSYYRG 87 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-------CSHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-------hhhHHHhcc
Confidence 35899999999999999999998765444344434444444555542 2579999999975522 223444667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|++++.++..+..|..++..+.. ...+|++||+||+|+.......++..+.+...+++++++||+++.||+
T Consensus 88 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 9999999999987777766666666554321 246899999999999654333455666666778899999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 046233 499 EVISAAYQLLQKNK 512 (518)
Q Consensus 499 eL~~~L~e~L~~~~ 512 (518)
+++++|.+.+....
T Consensus 167 ~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 167 CAFEELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887543
No 14
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=3.1e-22 Score=187.55 Aligned_cols=164 Identities=14% Similarity=0.072 Sum_probs=122.2
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.||||||+.... ..+..++.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 91 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFR-------TITTAYYR 91 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGT-------CCCHHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhc
Confidence 3468999999999999999999987655455555555555555555521 579999999975422 12344566
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.+|++|+|+|++++.++..+..|...+..+.. ...|++||+||+|+.......+.........+++++++||+++.||
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNV 169 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 79999999999987777776666666654432 3689999999999954333344455555556789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++++.+|.+.+.+.
T Consensus 170 ~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 170 NEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 15
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.88 E-value=5.3e-23 Score=186.77 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=118.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+..... + +..+++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~---~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK----M---LDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT----T---HHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc----h---hhHHHhh
Confidence 5899999999999999999998754322222223344445555553 26899999999765321 2 3344667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
+|++|+|+|++++.++..+..|..++..+.......| +++|+||+|+...... .++........+++++++||+++.|
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (178)
T 2hxs_A 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159 (178)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999999998777777767666654322112456 7999999999764333 3445555556688999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
+++++++|.+.+...
T Consensus 160 i~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 160 VFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
No 16
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.88 E-value=5.1e-22 Score=181.63 Aligned_cols=164 Identities=19% Similarity=0.173 Sum_probs=121.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++... ...++.|+.......+.++.. ..+.+|||||+.+... + +..++..+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----M---RDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT----T---HHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH----H---HHHHHhcC
Confidence 4899999999999999999998653 445555555555555555421 3578899999765322 2 23335569
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++++|+|+++..++..+..+...+..+.. ..+.|+++|+||+|+.......+.........+++++++||+++.|+++
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 155 (189)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999998777777777666655432 2478999999999998655445556666666688999999999999999
Q ss_pred HHHHHHHHHHhhhH
Q 046233 500 VISAAYQLLQKNKE 513 (518)
Q Consensus 500 L~~~L~e~L~~~~~ 513 (518)
++++|.+.+.....
T Consensus 156 l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 156 AFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999876543
No 17
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.88 E-value=5e-22 Score=186.18 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=125.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+.++.+.....+.++. ...+.||||||+..... .+..++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 79 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYR 79 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhcc
Confidence 346899999999999999999998776555555555555555566553 24799999999765322 2344567
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+..+.. ...|++||+||+|+...... .+....+....+++++++||+++.|
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 79999999999998887777777776665432 46899999999999865433 3445555566688999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
|+++|.+|.+.+...
T Consensus 158 i~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 158 VEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 18
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.88 E-value=6e-22 Score=181.27 Aligned_cols=166 Identities=17% Similarity=0.107 Sum_probs=120.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeece-eeEEEecC----------CceEEEEcCCCCccccccCCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPN-LGVVSFDY----------DSTMVVADLPGLLEGAHQGFGL 408 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~-lg~v~~~~----------~~~l~I~DTPGliegas~~~gL 408 (518)
..+|+|+|.+|||||||+++|++........+..+.+.. ...+.+.. ...+.+|||||+.. +
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~ 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER-------F 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-------G
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH-------H
Confidence 468999999999999999999987653332332222222 23344432 24799999999854 2
Q ss_pred chhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceE
Q 046233 409 GHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPF 487 (518)
Q Consensus 409 g~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~ 487 (518)
...+..++..+|++|+|+|++++.++..+..+...+..+.. ....|+++|+||+|+...... .+.+.+.....+++++
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence 23345567789999999999998777777666666654431 246899999999999764333 3455555556688999
Q ss_pred EEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 488 CMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
++||+++.|+++++++|.+.+.+...
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998876543
No 19
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.88 E-value=5.3e-22 Score=183.57 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=120.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+..+.+.....+.... ...+.||||||+.... ..+..++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 93 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYR 93 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGT
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhcc
Confidence 456999999999999999999998765433333333333333344332 3579999999975422 22445567
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+..+. ....|++||+||+|+...... .++..+.....+++++++||+++.|
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 7999999999998877777777777666543 246899999999999764433 3445555566688999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
+++++++|.+.+.+.
T Consensus 172 i~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 172 VKQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988653
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=3.6e-22 Score=181.75 Aligned_cols=164 Identities=16% Similarity=0.021 Sum_probs=118.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+..+.......+.+.. ...+.||||||+.... ..+..++..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 84 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRG 84 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhcc
Confidence 35899999999999999999998765443333333333333444432 2479999999975422 223344667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|++++.++.....|...+..... ...|++||+||+|+...... .+++.+.+...+++++++||+++.|+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (181)
T 2efe_B 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNV 162 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCH
Confidence 9999999999988777777766666665432 47899999999999765443 34566666667889999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 046233 498 HEVISAAYQLLQKNK 512 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~ 512 (518)
++++++|.+.+....
T Consensus 163 ~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 163 KEIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998876543
No 21
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=4e-22 Score=180.41 Aligned_cols=161 Identities=14% Similarity=0.051 Sum_probs=118.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+... ...+..+++.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~ 87 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF-------RAVTRSYYRG 87 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT-------CHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh-------hhhHHHHhcc
Confidence 46899999999999999999998765332223222233333444432 247899999997542 2234455677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|+++..++..+..|...+..+.. .+.|+++|+||+|+...... .+++.+.+...+++++++||+++.|+
T Consensus 88 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENV 165 (179)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999998777777777666665432 46899999999999754333 35566666777889999999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 498 HEVISAAYQLLQ 509 (518)
Q Consensus 498 ~eL~~~L~e~L~ 509 (518)
++++++|.+.+.
T Consensus 166 ~~l~~~l~~~i~ 177 (179)
T 1z0f_A 166 EDAFLEAAKKIY 177 (179)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=6.5e-22 Score=179.86 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=116.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCC-CCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIAN-YPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~-ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
..+|+|+|.+|||||||+++|++....... .+.++.+.....+.++. ...+.+|||||+.... ..+..++.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 82 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYR 82 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHcc
Confidence 458999999999999999999987664322 33333433333444442 2479999999976522 22444567
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+..+.. ...|+++|+||+|+...... .++........+++++++||+++.|
T Consensus 83 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 79999999999998777777767666665432 46899999999999865433 3344455555688999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 046233 497 THEVISAAYQLLQKNK 512 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~ 512 (518)
+++++++|.+.+.+..
T Consensus 161 i~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887543
No 23
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=186.73 Aligned_cols=165 Identities=17% Similarity=0.060 Sum_probs=114.1
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++... ...+..|+.......+.++. ...+.||||||+.+... + +..++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~ 89 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----L---RPLCY 89 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS----S---GGGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH----H---hHhhc
Confidence 3456899999999999999999998653 34555555444444455542 13678999999865322 2 23346
Q ss_pred cccCceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc------------c-chHHHHHHHHhc
Q 046233 417 ERCSALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAY------------E-KWPSFKEKLQAR 482 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~------------e-~~eel~~~l~~~ 482 (518)
..+|++|+|+|++++.++..+. .|...+..+. ...|++||+||+|+.... . ..++........
T Consensus 90 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 90 TNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 6799999999999987777765 5666666543 378999999999997531 1 123344444444
Q ss_pred CC-ceEEEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 483 GI-EPFCMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 483 g~-~i~~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
+. ++++|||+++.||+++|++|.+.+...+.
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 65 89999999999999999999998876543
No 24
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=2.4e-22 Score=180.06 Aligned_cols=161 Identities=14% Similarity=0.022 Sum_probs=117.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||+++|++........+..+.+.....+.++. ...+.+|||||+.+... + +...+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~ 77 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----I---TKAYYRG 77 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----C---CHHHHTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH----H---HHHHhcC
Confidence 35899999999999999999998765433333333344444444442 24799999999754221 2 3334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|++++.++..+..|...+..+. .+.|+++|+||+|+...... .+++.+.....+++++++||+++.|+
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 78 AQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154 (168)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 999999999999777777666666655432 46899999999999764433 34555566666889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
++++++|.+.+.+
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987753
No 25
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.88 E-value=4.6e-22 Score=184.63 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=119.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+.++.+.....+.++. ...+.||||||+..... + +..++..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~ 93 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS----I---TRSYYRG 93 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC----C---CHHHHTT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh----h---HHHHhcc
Confidence 35899999999999999999998766544444444444445555542 24799999999755221 2 3344567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|+++..++..+..|...+..+.. .+.|++||+||+|+...... .++........+++++++||+++.||
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999998777777777666665432 47899999999999754333 34455555566889999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 046233 498 HEVISAAYQLLQKNK 512 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~ 512 (518)
+++|++|.+.+.+..
T Consensus 172 ~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 172 EEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998886543
No 26
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.88 E-value=3.9e-22 Score=179.36 Aligned_cols=162 Identities=14% Similarity=0.029 Sum_probs=115.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||+++|++........+..+.......+.++. ...+.+|||||+.+... .+..++..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 78 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYRD 78 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHhcc
Confidence 35899999999999999999998765433334333333334444442 24789999999765322 23334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|+++..++..+..|...+..... ...|+++|+||+|+...... .++..+.....+++++++||+++.|+
T Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGI 156 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 9999999999998777776666665553321 36899999999999764332 34555666666889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
++++++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (170)
T 1z08_A 157 EELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988753
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.88 E-value=3.2e-22 Score=179.15 Aligned_cols=160 Identities=16% Similarity=0.019 Sum_probs=115.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........+..+.......+.++. ...+.+|||||+.... ..+..++..+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCC
Confidence 5899999999999999999998654332222222222223334332 3579999999975522 2234456779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|++++.++.....|...+.... ....|+++|+||+|+...... .++..+.....+++++++||+++.|++
T Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (170)
T 1r2q_A 80 QAAIVVYDITNEESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999998877777766666665443 246899999999999754332 345556666678899999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
+++++|.+.+.
T Consensus 158 ~l~~~i~~~~~ 168 (170)
T 1r2q_A 158 EIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 28
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=6.9e-22 Score=179.28 Aligned_cols=165 Identities=18% Similarity=0.070 Sum_probs=112.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
..+|+++|.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+.... ..+..++.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 80 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYR 80 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCST
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhh
Confidence 46899999999999999999998765443344444444444554431 2578999999975422 22344567
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCccc--chHHHHHHHH-hcCCceEEEecc
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAYE--KWPSFKEKLQ-ARGIEPFCMSAV 492 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l~-~~g~~i~~ISAk 492 (518)
.+|++|+|+|++++.++..+..|...+..+.. .....|+++|+||+|+..... ..++..+... ..+++++++||+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 160 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAK 160 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecC
Confidence 79999999999998777777666665543321 225689999999999964322 2334444444 346799999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q 046233 493 KREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~~ 511 (518)
++.|+++++++|.+.+.+.
T Consensus 161 ~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 161 NAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999887654
No 29
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=4.6e-22 Score=188.58 Aligned_cols=166 Identities=14% Similarity=0.077 Sum_probs=124.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+..+.+.....+.++.. ..+.||||||+... ...+..++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~ 96 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYY 96 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHH
Confidence 34569999999999999999999987665444555455555555555532 47999999997542 22344556
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
+.+|++|+|+|+++..++..+..|..++..+.. ...|+++|+||+|+....+. .++........++++++|||+++.
T Consensus 97 ~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 97 RSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESD 174 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 789999999999998777777777776665432 46899999999999754433 334444455567899999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 046233 496 GTHEVISAAYQLLQKNK 512 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~ 512 (518)
||+++|.+|.+.+....
T Consensus 175 gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 175 NVEKLFLDLACRLISEA 191 (201)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999998886543
No 30
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=2.4e-22 Score=181.85 Aligned_cols=161 Identities=11% Similarity=-0.018 Sum_probs=120.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.+|||||+.... ..+..++..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 48999999999999999999987665555555565565556665532 479999999975522 2233446679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|++++.++.....+...+..... ...|+++|+||+|+...... .++....+...+++++++||+++.|++
T Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 88 TVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 999999999987777666666665553321 46899999999999765433 344555555668899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+++++|.+.+..
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999887644
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=7.6e-22 Score=178.26 Aligned_cols=167 Identities=19% Similarity=0.073 Sum_probs=110.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++...... ++.+..+.....+.++. ...+.+|||||+.... ...+. ..++..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--~~~~~---~~~~~~ 77 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD--KSWSQ---ESCLQG 77 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------CHHH---HHTTTS
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccc--hhhhH---Hhhccc
Confidence 35899999999999999999998765321 22222222333444542 2478999999985421 11111 223556
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|++++.++.....|...+..+.. ...+|+++|+||+|+....+. .++........+++++++||+++.||
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi 156 (175)
T 2nzj_A 78 GSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156 (175)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCH
Confidence 9999999999998887777777776664421 246899999999999865443 23344444555789999999999999
Q ss_pred HHHHHHHHHHHHhhhH
Q 046233 498 HEVISAAYQLLQKNKE 513 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~~ 513 (518)
++++++|.+.+...++
T Consensus 157 ~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 157 AELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999998876544
No 32
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=5.4e-22 Score=190.34 Aligned_cols=168 Identities=22% Similarity=0.277 Sum_probs=115.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCc--chhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGL--GHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gL--g~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++.......++++|.......+.+. ...+.||||||+.+........ ...+...+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET-TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC-CCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 589999999999999999999887666778888888877777665 4789999999996533221100 0111222466
Q ss_pred cCceEEEEeCCCCCCHH--HHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH----HHHHHHHhcC--CceEEEe
Q 046233 419 CSALVHVIDGSAEQPEF--EFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP----SFKEKLQARG--IEPFCMS 490 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e--~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e----el~~~l~~~g--~~i~~IS 490 (518)
+|++|+|+|+++..++. ....+...+. ......|+++|+||+|+........ .+.+.....+ +++++||
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~~~~~~l~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQINLFYSIK---SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHHHHHHHHH---TCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred ccEEEEEEecccccCcchHHHHHHHHHHH---HhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 89999999999876653 1222333333 2224789999999999986544332 2333334445 7899999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhh
Q 046233 491 AVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~~~~ 512 (518)
|+++.||++++++|.+.+...+
T Consensus 186 A~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887554
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.88 E-value=7.1e-22 Score=179.31 Aligned_cols=159 Identities=23% Similarity=0.209 Sum_probs=118.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+|+|.+|||||||+++|++........+.+|.+.....+.++ +..+.+|||||+..... .+.+++..+
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 79 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-DKKITFLDTPGHEAFTT-------MRARGAQVT 79 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET-TEEEEESCCCSSSSSSC-------SCCSSCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC-CceEEEEECCCCHHHHH-------HHHHHHhhC
Confidence 3589999999999999999999887766666766766666666666 57899999999865322 234567789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-------C--CceEEEe
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-------G--IEPFCMS 490 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-------g--~~i~~IS 490 (518)
|++|+|+|+++......+..+.. +. ..+.|+++|+||+|+.... .+.+...+... + +++++||
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~-~~-----~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINH-AK-----AANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHH-HG-----GGSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred CEEEEEEECCCCCcHHHHHHHHH-HH-----hCCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 99999999988766655554432 22 1368999999999997642 23333333322 1 4799999
Q ss_pred ccCCCCHHHHHHHHHHHHHhhhHh
Q 046233 491 AVKREGTHEVISAAYQLLQKNKEA 514 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~~~~~~ 514 (518)
|+++.|+++++++|.+.+...+..
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhccc
Confidence 999999999999999988775543
No 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.88 E-value=1.1e-21 Score=183.24 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=120.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+..+.......+.+.. ...+.||||||+... ...+..++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~ 79 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYYR 79 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhhc
Confidence 356999999999999999999998765433333333333333344432 357999999998542 223455577
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|++++.++..+..|...+..+. ....|++||+||+|+...... .+.........+++++++||+++.|
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 8999999999999877777777777776543 246899999999999765433 3444555555688999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
|++++++|.+.+...
T Consensus 158 i~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 158 VKQTFERLVDVICEK 172 (203)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 35
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=4e-22 Score=178.98 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=105.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++.... ....+.+|... .+.++ ....+.+|||||+..... + ...++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~----~---~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRW----L---PGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchh----h---hhhhhhh
Confidence 58999999999999999999976543 23344444432 22232 134789999999865322 2 2234567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|++++.++.....+...+.... ...+.|+++|+||+|+....... +.........+++++++||+++.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNV 151 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCH
Confidence 999999999999888777777777665432 23578999999999998654443 3344445556889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++++++|.+.+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 152 QALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988654
No 36
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.9e-22 Score=180.98 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=112.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........+ +........+..+. ...+.+|||||+.+.. ..+..++..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-TVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-CSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 4899999999999999999998654322222 11111112223331 2468999999976522 2233445669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|++++.++.....+...+..+.......|+++|+||+|+....+.. ..........+++++++||+++.|++
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155 (172)
T ss_dssp SEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHH
Confidence 99999999998777777666666666543334578999999999997654432 33344444557899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+++++|.+.+..
T Consensus 156 ~l~~~l~~~~~~ 167 (172)
T 2erx_A 156 ELFQELLNLEKR 167 (172)
T ss_dssp HHHHHHHHTCCS
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.87 E-value=5.5e-22 Score=186.72 Aligned_cols=165 Identities=11% Similarity=0.020 Sum_probs=118.8
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+.+.. ..+..++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~ 99 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYY 99 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHH
Confidence 4457999999999999999999998764332222222333344455542 2589999999985422 2234456
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCC-ceEEEeccCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGI-EPFCMSAVKR 494 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~-~i~~ISAktg 494 (518)
+.+|++|+|+|++++.++..+..|...+..+. ..+.|++||+||+|+...... .+++.+.+...++ ++++|||+++
T Consensus 100 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 100 RSANGAILAYDITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp TTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 77999999999998877777777766666543 246899999999999764332 3556666667788 9999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
.||+++|++|.+.+...
T Consensus 178 ~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 178 SNVEEAFLRVATELIMR 194 (201)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.87 E-value=9.1e-22 Score=176.59 Aligned_cols=160 Identities=16% Similarity=0.028 Sum_probs=115.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........+..........+.+.. ...+.+|||||+.... ..+..++..+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYRGS 79 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCcCC
Confidence 5899999999999999999998764322222222222222333332 2578999999985422 2233446679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++|+|+|++++.++.....|...+..+. ....|+++|+||+|+....+. .+.........+++++++||+++.|++
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (170)
T 1z0j_A 80 AAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 99999999999877777777777776543 246899999999999865443 334445555668899999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
+++++|.+.+.
T Consensus 158 ~l~~~i~~~i~ 168 (170)
T 1z0j_A 158 ELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 39
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=185.95 Aligned_cols=162 Identities=14% Similarity=0.053 Sum_probs=116.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+... ...+..++..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~ 98 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYYRS 98 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HHHHHHHhcC
Confidence 45899999999999999999998765444444444555555555542 247999999997542 2234445677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhc-CCceEEEeccCCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQAR-GIEPFCMSAVKREG 496 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~-g~~i~~ISAktgeG 496 (518)
+|++|+|+|+++..++..+..|...+..+.. .+.|++||+||+|+....+.. ++..+..... +++++++||+++.|
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 9999999999998887777777666665432 468999999999997654432 3444444442 78999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
|++++++|.+.+.+
T Consensus 177 i~~l~~~l~~~i~~ 190 (192)
T 2il1_A 177 VDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=4.6e-22 Score=178.12 Aligned_cols=160 Identities=15% Similarity=0.040 Sum_probs=116.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++........+..+.+.....+.++. ...+.+|||||+.... ..+..++..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 4899999999999999999998765433344444444444455542 2479999999975422 2234456779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc---ccch-HHHHHHHHhcCCceEEEeccCCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA---YEKW-PSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~---~e~~-eel~~~l~~~g~~i~~ISAktge 495 (518)
|++++|+|++++.++.....|...+.... ....|+++|+||+|+... .+.. +...+.....+++++++||+++.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 77 QAALVVYDVTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred cEEEEEEecCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999877777766666665443 246899999999999754 2222 33444445568899999999999
Q ss_pred CHHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLLQ 509 (518)
Q Consensus 496 GI~eL~~~L~e~L~ 509 (518)
|+++++++|.+.+.
T Consensus 155 gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 155 NVNDVFLGIGEKIP 168 (170)
T ss_dssp THHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987653
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.87 E-value=8.7e-22 Score=179.40 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=121.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++... ...++.|+.......+.++.. ..+.||||||+.+.. ..+..++..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhccC
Confidence 5899999999999999999998653 344555554444444454422 478999999976522 2233445679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|+++..++.....|...+..+.. ...+|++||+||+|+...... .+++.+.+...+++++++||+++.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 999999999988777776666665554322 246899999999999764332 455666677778899999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 046233 499 EVISAAYQLLQKNK 512 (518)
Q Consensus 499 eL~~~L~e~L~~~~ 512 (518)
+++++|.+.+...+
T Consensus 170 ~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 170 KVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887544
No 42
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=181.43 Aligned_cols=163 Identities=16% Similarity=0.102 Sum_probs=122.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++... ...++.|+.......+.++.. ..+.||||||+.+.. ..+..++..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 85 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRS 85 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHhh
Confidence 45899999999999999999998763 345555555554455555432 479999999976522 223334566
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|+++..++.....|...+..+.. ....|++||+||+|+....+. .+++.+.+...+++++++||+++.||
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 9999999999998777777666666654432 247899999999999764433 44566666666889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++++.+|.+.+...
T Consensus 165 ~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 165 DKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988654
No 43
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=181.70 Aligned_cols=165 Identities=16% Similarity=0.060 Sum_probs=118.7
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+..+.......+.+.. ...+.||||||+.... ..+..++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~ 95 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYY 95 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHh
Confidence 3456999999999999999999998765433333222222223333321 3578999999986522 2234446
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
..+|++|+|+|++++.++..+..|...+..+. ....|++||+||+|+...... .++...++...+++++++||+++.
T Consensus 96 ~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (193)
T 2oil_A 96 RGAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDST 173 (193)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 67999999999998777666666666665332 246899999999999764433 345555566678899999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
|+++++++|.+.+.+.
T Consensus 174 gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 174 NVELAFETVLKEIFAK 189 (193)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=7.6e-22 Score=176.58 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=113.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.++. ...+.+|||||+.+... + +..++..+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~---~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----M---RDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----H---HHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----H---HHHHhccC
Confidence 48999999999999999999986543 2333333333323333332 24689999999765322 2 23345669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhc-CCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQAR-GIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~-g~~i~~ISAktgeGI 497 (518)
|++++|+|++++.++.....+...+..+.. ..+.|+++|+||+|+...... .++........ +++++++||+++.|+
T Consensus 76 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (167)
T 1c1y_A 76 QGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154 (167)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCH
Confidence 999999999998777776666665543321 247899999999999765433 34455555555 789999999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 498 HEVISAAYQLLQ 509 (518)
Q Consensus 498 ~eL~~~L~e~L~ 509 (518)
++++++|.+.+.
T Consensus 155 ~~l~~~l~~~i~ 166 (167)
T 1c1y_A 155 NEIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
No 45
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.87 E-value=9.8e-22 Score=178.13 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=118.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++... ...+..|+.......+.++. ...+.+|||||+.+... +. ..++..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----~~---~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----MR---EQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----CH---HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----HH---HHHHhhC
Confidence 5899999999999999999998743 34455555444444455542 24789999999765321 32 3345569
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHH-HhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLEL-EMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL-~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
|++++|+|+++..++..+..+...+ .... ..+.|+++|+||+|+...... .++........+++++++||+++.|+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKD--RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHT--SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 9999999999987777766665555 3222 246899999999999865443 23444445556889999999999999
Q ss_pred HHHHHHHHHHHHhhhH
Q 046233 498 HEVISAAYQLLQKNKE 513 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~~ 513 (518)
++++++|.+.+....+
T Consensus 160 ~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 160 DEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999998876543
No 46
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=3.4e-22 Score=181.93 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=111.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++....+..+|++|.+...+.+.++ +..+.+|||||+....... ..+...+++. ..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~-~~ 81 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EK 81 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET-TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH-HC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC-CcEEEEEECCCcccCCCcchhHHHHHHHHhc-CC
Confidence 489999999999999999999987777788888888888888776 5789999999987632110 1122333321 36
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
++++++|+|+++. .....|..++.. .++|+++|+||+|+........+..+.....+++++++||+++.|++
T Consensus 82 ~~~~i~v~D~~~~---~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 82 PDLVVNIVDATAL---ERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CSEEEEEEETTCH---HHHHHHHHHHHH-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCEEEEEecCCch---hHhHHHHHHHHh-----cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999863 223334444432 36899999999998643322112233334446899999999999999
Q ss_pred HHHHHHHHHH
Q 046233 499 EVISAAYQLL 508 (518)
Q Consensus 499 eL~~~L~e~L 508 (518)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 47
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=4.6e-22 Score=177.31 Aligned_cols=158 Identities=27% Similarity=0.350 Sum_probs=109.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
+++|+++|.+|||||||+++|++.... ...++.+|.+.....+.+. +..+.+|||||+.........+...+...+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD-RGRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEET-TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC-CceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 468999999999999999999987654 4677778887777777766 46899999999876332111122334456788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI 497 (518)
+|++|+|+|+++...... ..+..++.. ...|+++|+||+|+....+...++ . ..++ +++++||+++.|+
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~---~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR-----KGKPVILVATKVDDPKHELYLGPL---Y-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH-----HTCCEEEEEECCCSGGGGGGCGGG---G-GGSSCSCEECBTTTTBSH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh-----cCCCEEEEEECcccccchHhHHHH---H-hCCCCCeEEEecccCCCh
Confidence 999999999998655433 233444443 368999999999998653332222 2 3455 8999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 498 HEVISAAYQLL 508 (518)
Q Consensus 498 ~eL~~~L~e~L 508 (518)
++++++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998765
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.87 E-value=1.9e-21 Score=179.89 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=114.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+|+|.+|||||||+++|++.......+. .|.......+... ...+.||||||+.... ..+..+++.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 87 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT-ATVGYNVETFEKG-RVAFTVFDMGGAKKFR-------GLWETYYDNI 87 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCC-CCSSEEEEEEEET-TEEEEEEEECCSGGGG-------GGGGGGCTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccc-cccceeEEEEEeC-CEEEEEEECCCCHhHH-------HHHHHHHhcC
Confidence 35899999999999999999998765442222 2333344444443 5789999999986532 2234456779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhc------CCCCCCCCEEEEEeCCCCCCcccchHHHHHHH------HhcCCceE
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMF------SPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL------QARGIEPF 487 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~------~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l------~~~g~~i~ 487 (518)
|++|+|+|+++..++.....+...+... .+.....|++||+||+|+..... .+++.+.+ ...+++++
T Consensus 88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-AAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-HHHHHHHHTHHHHHTTSCEEEE
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-HHHHHHHhcchhhccCCeeEEE
Confidence 9999999999988877776555544321 11113789999999999986532 23333332 33567899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 488 CMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
+|||+++.||+++|++|.+.+....
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EeeCCCccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 49
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=7.9e-22 Score=175.89 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=116.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++... ...+..|+.......+.++.. ..+.+|||||+.+.. ..+..++..+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhcC
Confidence 4899999999999999999998754 334444444444444444422 479999999975422 2233445679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|++++.++.....+...+..+.. ....|+++|+||+|+....+. .++..+.+...+++++++||+++.|++
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 77 EGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155 (168)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 999999999998777777666666554322 246899999999999764433 345566666668899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~i~~ 167 (168)
T 1u8z_A 156 KVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 50
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.87 E-value=1e-21 Score=178.96 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=115.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++..... +..|+.......+.++. ...+.+|||||+.. ..+ ++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~---~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------AKF---SGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------HHH---HHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch---------hHH---HHhC
Confidence 489999999999999999999876532 22232222233344442 24689999999754 223 4559
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCC--ccc-chHHHHHHHHhc-CCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSP-EIAEKPYIVAFNKMDLPE--AYE-KWPSFKEKLQAR-GIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-~l~~kPiIVVlNKiDL~~--~~e-~~eel~~~l~~~-g~~i~~ISAktg 494 (518)
|++|+|+|++++.++..+..|..++..+.. ...+.|+++|+||+|+.. ... ..++..+..... +++++++||+++
T Consensus 74 d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 74 DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 999999999998888888776666654322 124689999999999952 222 234444444444 679999999999
Q ss_pred CCHHHHHHHHHHHHHhhhHhh
Q 046233 495 EGTHEVISAAYQLLQKNKEAE 515 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~~~~~ 515 (518)
.|++++|++|.+.+....+..
T Consensus 154 ~~i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp BTHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhh
Confidence 999999999999887665543
No 51
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.87 E-value=1.7e-21 Score=172.98 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=116.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++.... ..+..++.......+.++. ...+.+|||||+.+.. ..+..++..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 48999999999999999999986542 2333333333333344432 2468999999975422 2233345679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++++|+|+++..++..+..|...+..+.. ..+.|+++|+||+|+.......+...+.....+++++++||+++.|+++
T Consensus 76 ~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 76 EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999987777776666666654422 2368999999999998744444555566666688999999999999999
Q ss_pred HHHHHHHHHHh
Q 046233 500 VISAAYQLLQK 510 (518)
Q Consensus 500 L~~~L~e~L~~ 510 (518)
++++|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 52
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.87 E-value=7.5e-22 Score=191.00 Aligned_cols=161 Identities=12% Similarity=-0.004 Sum_probs=115.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.||+|||.+|||||||+++|+...+.....|....+.....+..+. ...+.||||+|+.+... +... +++.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~----l~~~---~~~~a 86 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS----LIPS---YIRDS 86 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG----GHHH---HHTTC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh----HHHH---Hhccc
Confidence 3899999999999999999998654322222212222222333332 24789999999876332 3333 35569
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+++++|+|+++..++..+..|+..+..... .+.|++||+||+|+...... .++..++....++++++|||++|.||+
T Consensus 87 ~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 87 AAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred cEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence 999999999999999988888887765432 46899999999999865543 345555666678999999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
++|+.|.+.+..
T Consensus 165 e~F~~i~~~i~~ 176 (216)
T 4dkx_A 165 QLFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 53
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.87 E-value=1.4e-21 Score=178.57 Aligned_cols=164 Identities=15% Similarity=0.064 Sum_probs=119.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|+.... ...+..|+.......+.++. ...+.+|||||+..... +. ..+++.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~---~~~~~~ 77 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----FP---QTYSID 77 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC----CC---GGGTTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH----HH---HHHHhc
Confidence 35899999999999999999997653 44454444444444455542 14679999999865321 22 234556
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++++|+|++++.++..+..|..++..... ....|+++|+||+|+...... .++..+.....+++++++||+++.|+
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 78 INGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTA 156 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCH
Confidence 9999999999998887777777666643321 246899999999999755443 34555666667889999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 046233 498 HEVISAAYQLLQKNK 512 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~ 512 (518)
+++|++|.+.+....
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 157 VDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 54
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=6.7e-22 Score=185.69 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=117.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+..... + +..++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---~~~~~ 95 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS----V---TRSYY 95 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC----C---CHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH----H---HHHHh
Confidence 4456999999999999999999998766554455555555555555542 25899999999754221 2 33446
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
..+|++|+|+|++++.++..+..|...+..+.. ...|++||+||+|+...... ..+..+.....++++++|||+++.
T Consensus 96 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 173 (200)
T 2o52_A 96 RGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGE 173 (200)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 679999999999998777777666666654432 46899999999999754332 345555666678899999999999
Q ss_pred CHHHHHHHHHHHHHhhhH
Q 046233 496 GTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~~ 513 (518)
||+++|.+|.+.+.....
T Consensus 174 gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 174 NVEEAFLKCARTILNKID 191 (200)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999988765443
No 55
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.87 E-value=3.3e-21 Score=177.06 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=116.2
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCC--------CceeeeceeeEE---Eec-CCceEEEEcCCCCccccccCC
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANY--------PFTTLLPNLGVV---SFD-YDSTMVVADLPGLLEGAHQGF 406 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~y--------pfTTl~p~lg~v---~~~-~~~~l~I~DTPGliegas~~~ 406 (518)
...+|+|+|.+|||||||++.|.+........ ..+|........ .++ ....+.||||||+....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 34689999999999999998888754322110 111221111111 111 12479999999986522
Q ss_pred CcchhhhccccccCceEEEEeCCCCCC---HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcC
Q 046233 407 GLGHEFLRHTERCSALVHVIDGSAEQP---EFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARG 483 (518)
Q Consensus 407 gLg~~fLr~IerADvlL~VVDaS~~~s---~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g 483 (518)
..+..+++.+|++|+|+|++++.. ...+..+..++..+.....+.|++||+||+|+... ...+++.+.+...+
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEG 164 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC-CCHHHHHHHHCTTC
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc-cCHHHHHHHHHhcC
Confidence 223345677999999999995432 23445555666665555578999999999999765 33566777777778
Q ss_pred C-ceEEEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 484 I-EPFCMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 484 ~-~i~~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
+ +++++||+++.|++++|++|.+.+.+..+
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 8 99999999999999999999998876543
No 56
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.87 E-value=8.4e-22 Score=186.09 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=116.2
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-----------CceEEEEcCCCCccccccCC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-----------DSTMVVADLPGLLEGAHQGF 406 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-----------~~~l~I~DTPGliegas~~~ 406 (518)
....+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 3456999999999999999999998755322222222233333344432 257999999997542
Q ss_pred CcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcC
Q 046233 407 GLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEI--AEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARG 483 (518)
Q Consensus 407 gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l--~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g 483 (518)
...+..++..+|++|+|+|+++..++..+. .++..+.... ...|++||+||+|+...... .+...++....+
T Consensus 98 --~~~~~~~~~~~d~iilV~D~~~~~s~~~~~---~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 172 (217)
T 2f7s_A 98 --RSLTTAFFRDAMGFLLMFDLTSQQSFLNVR---NWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG 172 (217)
T ss_dssp --HHHHHHHHTTCCEEEEEEETTCHHHHHHHH---HHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred --HhHHHHHhcCCCEEEEEEECcCHHHHHHHH---HHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC
Confidence 223445567899999999999876655544 4444333222 57899999999999764433 345555666668
Q ss_pred CceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 484 IEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 484 ~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+++++|||+++.||++++++|.+.+...
T Consensus 173 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 173 IPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp CCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987654
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.87 E-value=1e-21 Score=174.98 Aligned_cols=161 Identities=17% Similarity=0.076 Sum_probs=115.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++..... .+..++.......+.++. ...+.+|||||+.+.. ..+..++..+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhccC
Confidence 489999999999999999999865432 333333333333444442 2358999999975522 2233346679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|++++|+|++++.++..+..+...+..+.. ....|+++|+||+|+....+. ..+........+++++++||+++.|++
T Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 154 (167)
T 1kao_A 76 QGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154 (167)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHH
Confidence 999999999988777777666665544321 247899999999999754443 234445555568899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+++++|.+.+.+
T Consensus 155 ~l~~~l~~~~~~ 166 (167)
T 1kao_A 155 ELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 58
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4.3e-22 Score=184.28 Aligned_cols=162 Identities=17% Similarity=0.102 Sum_probs=115.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeece-eeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPN-LGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~-lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++........+ |.... ...+..+. ...+.||||||+.... ..+..++..
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP--TIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCTTSC--CCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCcccC--ccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 5899999999999999999998654322222 22111 12222321 2478999999975422 223334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|++++.++..+..++..+..+.......|+++|+||+|+.......+.........+++++++||+++.|++
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence 99999999999877777766666666544333346899999999999864333445555555667899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
+++++|.+.+...
T Consensus 160 ~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 160 ELFQELLTLETRR 172 (199)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887543
No 59
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=180.24 Aligned_cols=162 Identities=20% Similarity=0.169 Sum_probs=116.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+|+|.+|||||||+++|++.......+. +|+......+.++ +..+.||||||+.... ..+..++..+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 91 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSS-SLSFTVFDMSGQGRYR-------NLWEHYYKEG 91 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECS-SCEEEEEEECCSTTTG-------GGGGGGGGGC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEEC-CEEEEEEECCCCHHHH-------HHHHHHHhcC
Confidence 35899999999999999999998763333332 4555555666666 5799999999976522 2344556779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCC--CCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEecc
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEI--AEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAV 492 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l--~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAk 492 (518)
|++|+|+|+++..++.....+...+.... .. .++|+++|+||+|+..... .+++.+.+. ..++++++|||+
T Consensus 92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAVT-SVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCCC-HHHHHHHhChhhccCCceEEEEccCC
Confidence 99999999998777666655555443321 12 4789999999999976432 345555553 235689999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q 046233 493 KREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~~~ 512 (518)
++.||++++++|.+.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp TTBTHHHHHHHHHHHC----
T ss_pred CCcCHHHHHHHHHHHHHHhc
Confidence 99999999999999876543
No 60
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=183.22 Aligned_cols=167 Identities=20% Similarity=0.152 Sum_probs=122.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|||.+|||||||+++|++........+.++.+.....+.++. ...+.+|||||+..... .+.. .++..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~~~---~~~~~ 96 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG---WLRD---HCLQT 96 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH---HHHH---HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh---hhHH---Hhhcc
Confidence 46899999999999999999987655555556666555555555553 24688999999854211 0112 23556
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
+|++|+|+|++++.++..+..|...+..... ....|+++|+||+|+...... .++...+....+++++++||+++.||
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 9999999999998887777777766654432 246899999999999764433 34455555566789999999999999
Q ss_pred HHHHHHHHHHHHhhhH
Q 046233 498 HEVISAAYQLLQKNKE 513 (518)
Q Consensus 498 ~eL~~~L~e~L~~~~~ 513 (518)
+++|++|.+.+...+.
T Consensus 176 ~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 176 RELFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999998876443
No 61
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=3.3e-21 Score=173.43 Aligned_cols=158 Identities=21% Similarity=0.196 Sum_probs=114.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+++|.+|||||||+++|++.... .. ..|.......+.+. ...+.+|||||+.... ..+..+++.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~-~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYK-NLKFQVWDLGGLTSIR-------PYWRCYYSNT 75 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEET-TEEEEEEEECCCGGGG-------GGGGGGCTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEEC-CEEEEEEECCCChhhh-------HHHHHHhccC
Confidence 358999999999999999999876542 11 22344444556665 5789999999986522 2344556789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktg 494 (518)
|++|+|+|++++.++.....+...+... ....+.|+++|+||+|+..... ..++...+. ..+++++++||+++
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAMLEE-EELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFKTSATKG 153 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhc-hhhCCCEEEEEEECCCCcCCCC-HHHHHHHhCchhccCCceEEEECcCCCC
Confidence 9999999999988877765554444321 1125789999999999986532 233444432 23568999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 046233 495 EGTHEVISAAYQLLQK 510 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~ 510 (518)
.|+++++++|.+.+.+
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999998865
No 62
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.5e-21 Score=186.36 Aligned_cols=165 Identities=15% Similarity=0.024 Sum_probs=117.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+..... + +..++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~ 83 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA----I---TSAYY 83 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC----C---CGGGT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh----h---HHHHh
Confidence 3456999999999999999999998776554445445444445555542 14799999999765322 2 33446
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
+.+|++|+|+|++++.++..+..|..++..+. ....|++||+||+|+...... .++...+....+++++++||+++.
T Consensus 84 ~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 84 RGAVGALIVYDISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSE 161 (223)
T ss_dssp TTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CC
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 67999999999999888777777777666543 246899999999999764333 344555566668899999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
||+++|++|.+.+...
T Consensus 162 gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 162 NVDKAFEELINTIYQK 177 (223)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.87 E-value=2.5e-21 Score=178.51 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=116.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++... ...+..|+.......+.++. ...+.||||||+.+... .+..++..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHhhCcC
Confidence 4899999999999999999998653 23444444444444444442 24589999999764222 233446679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
|++++|+|+++..++..+..|...+..+.. ....|++||+||+|+.......+++.+.....+++++++||+++.|+++
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999998777777766666654432 2368999999999998644344566666666788999999999999999
Q ss_pred HHHHHHHHHHhhhH
Q 046233 500 VISAAYQLLQKNKE 513 (518)
Q Consensus 500 L~~~L~e~L~~~~~ 513 (518)
++++|.+.+.+.+.
T Consensus 173 l~~~l~~~~~~~~~ 186 (190)
T 3con_A 173 AFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.2e-21 Score=182.18 Aligned_cols=162 Identities=16% Similarity=0.048 Sum_probs=118.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC--CCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI--ANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I--a~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
...+|+|+|.+|||||||+++|++..... .....++. ....+.+. ....+.||||||+.+.. ..+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNELHKFLIWDTAGQERFH-------SLAPMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSSEEEEEEEEECCSGGGG-------GGTHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCEEEEEEEEcCCCchhhH-------hhhHHh
Confidence 34689999999999999999999876432 22222222 22223333 23579999999975522 223445
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktg 494 (518)
+..+|++|+|+|++++.++..+..|...+..+. ....|++||+||+|+...... .+++.+.+...++++++|||+++
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 170 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA 170 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTT
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 667999999999999888887777777776553 246899999999999754332 45566666667889999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
.|+++++++|.+.+.+.
T Consensus 171 ~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 171 INIEELFQGISRQIPPL 187 (192)
T ss_dssp BSHHHHHHHHHHTCC--
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 99999999999877543
No 65
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=2.8e-21 Score=176.84 Aligned_cols=161 Identities=17% Similarity=0.065 Sum_probs=116.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++.... ..+..++.......+.++. ...+.+|||||+..... + +..+++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIFV-DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----M---REQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----S---HHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH----H---HHHHHhcC
Confidence 58999999999999999999976432 3343333333344444442 13467799999755221 2 23345569
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEecc-CCCCH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAV-KREGT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAk-tgeGI 497 (518)
|++|+|+|++++.++..+..|...+..+. .....|+++|+||+|+...... .++..+.....+++++++||+ ++.|+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 91 DGFLIVYSVTDKASFEHVDRFHQLILRVK-DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHH-TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 99999999999877777776666654321 1246899999999999864433 344555566668999999999 99999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 66
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.86 E-value=2.1e-21 Score=180.23 Aligned_cols=162 Identities=16% Similarity=0.088 Sum_probs=117.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++... ...+..|+.......+.++. ...+.||||||+.+.. ..+..++..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 94 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYAD 94 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccC
Confidence 45899999999999999999998764 23333333333333344432 2457999999975532 223345667
Q ss_pred cCceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc--c-cchHHHHHHHHhcCCc-eEEEeccC
Q 046233 419 CSALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEA--Y-EKWPSFKEKLQARGIE-PFCMSAVK 493 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~--~-e~~eel~~~l~~~g~~-i~~ISAkt 493 (518)
+|++|+|+|++++.++..+ ..|...+..+. .+.|++||+||+|+... . ...++..+.....++. ++++||++
T Consensus 95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 9999999999998777775 55666666443 46899999999999753 2 2234555566666777 99999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 046233 494 REGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~~~ 512 (518)
+.||+++|++|.+.+...+
T Consensus 172 ~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999886543
No 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.9e-22 Score=184.43 Aligned_cols=165 Identities=13% Similarity=0.045 Sum_probs=120.8
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+..+.......+.+. ....+.||||||+... ...+..++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~ 93 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAYY 93 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHH
Confidence 456799999999999999999999876433222222222233333333 2457999999996542 22344456
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
..+|++|+|+|+++..++..+..|...+..+. ....|++||+||+|+...... .++........+++++++||+++.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 77999999999999888877777777776554 247899999999999765433 334444555568899999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
||+++|++|.+.+.+.
T Consensus 172 gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 172 SVRQAFERLVDAICDK 187 (191)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.86 E-value=7.2e-22 Score=183.64 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=92.2
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCcee-eeceeeEEEecC---CceEEEEcCCCCccccccCCCcchhhh
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTT-LLPNLGVVSFDY---DSTMVVADLPGLLEGAHQGFGLGHEFL 413 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTT-l~p~lg~v~~~~---~~~l~I~DTPGliegas~~~gLg~~fL 413 (518)
...+|+|+|.+|||||||+++|++..... ..+..|+ .+.....+.++. ...+.||||||+.... ..+.
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~ 91 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQIS 91 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHH
Confidence 34689999999999999999999873322 2333333 345555666654 3579999999986522 2344
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCC-cccc-hHHHHHHHHhcCCceEEEe
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSP-EIAEKPYIVAFNKMDLPE-AYEK-WPSFKEKLQARGIEPFCMS 490 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-~l~~kPiIVVlNKiDL~~-~~e~-~eel~~~l~~~g~~i~~IS 490 (518)
.++..+|++|+|+|++++.++..+..|...+..+.. .....|++||+||+|+.. .... .++..+.+...+++++++|
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~S 171 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVS 171 (208)
T ss_dssp TTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECC
T ss_pred HHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEec
Confidence 557789999999999998877777777776665432 124789999999999986 3333 3556666677789999999
Q ss_pred ccC-CCCHHHHHHHHHHHHHhhh
Q 046233 491 AVK-REGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 491 Akt-geGI~eL~~~L~e~L~~~~ 512 (518)
|++ +.|+++++++|.+.+....
T Consensus 172 a~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 172 ANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp C-------CHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHHHH
Confidence 999 9999999999999876543
No 69
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.86 E-value=2.3e-23 Score=195.00 Aligned_cols=164 Identities=15% Similarity=0.098 Sum_probs=115.5
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
....+|+|+|.+|||||||+++|++........+.++.+.....+.++.. ..+.||||||+.... ..+..++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~ 103 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYY 103 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-------CCSCC--
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHh
Confidence 34569999999999999999999987665554555566666666666532 479999999975532 2234456
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge 495 (518)
..+|++|+|+|+++..++..+..|...+..+.. .+.|++||+||+|+...... .+.........+++++++||+++.
T Consensus 104 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 181 (199)
T 3l0i_B 104 RGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNAT 181 (199)
T ss_dssp CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---H
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 779999999999998888777777776664432 47899999999999754332 123344455567899999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 046233 496 GTHEVISAAYQLLQK 510 (518)
Q Consensus 496 GI~eL~~~L~e~L~~ 510 (518)
||+++|++|.+.+..
T Consensus 182 gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 182 NVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877653
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=1.9e-21 Score=179.81 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=116.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+..... .+ +..+++.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~---~~~~~~~ 93 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK---SM---VQHYYRN 93 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT---TT---HHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh---hh---hHHHhcC
Confidence 45899999999999999999998765444444444444445555543 25799999999754220 12 2334567
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCC---
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKR--- 494 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktg--- 494 (518)
+|++|+|+|+++..++..+..|..++..+.. ..+.|++||+||+|+....+. .+....+....+++++++||+++
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcc
Confidence 9999999999998777777666666654421 246899999999999765443 33444455556889999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 046233 495 EGTHEVISAAYQLLQK 510 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~ 510 (518)
.||+++|.+|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887653
No 71
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=2.9e-21 Score=177.49 Aligned_cols=159 Identities=20% Similarity=0.181 Sum_probs=116.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+++|.+|||||||+++|++.. ...+. .|.......+.++ ...+.+|||||+.+.. ..+..+++.+
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~-~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 86 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHR-GFKLNIWDVGGQKSLR-------SYWRNYFEST 86 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEET-TEEEEEEEECCSHHHH-------TTGGGGCTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEEC-CEEEEEEECCCCHhHH-------HHHHHHhcCC
Confidence 4689999999999999999999876 22222 2343444555555 5789999999986522 2234456779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktg 494 (518)
|++|+|+|++++.++.....+...+... ....+.|+++|+||+|+..... .+++.+.+. ..+++++++||+++
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVE-ERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhC-hhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEEEEeeCCCC
Confidence 9999999999988877766555544322 1234689999999999976533 344444443 23568999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
.|+++++++|.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 165 EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 72
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=182.47 Aligned_cols=166 Identities=17% Similarity=0.087 Sum_probs=117.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++.... ..+..|+.......+.+. ....+.||||||+.+... + +..++.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~ 94 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----L---PYSFII 94 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC----C---CGGGTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH----H---HHHHHh
Confidence 3468999999999999999999987654 333333333333333332 235789999999765322 2 334456
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|+++..++..+..|...+..+. ....+|++||+||+|+....... .+........+++++++||+++.|
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 95 GVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL 173 (201)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 7999999999999887777777766665332 12468999999999998654433 344455555688999999999999
Q ss_pred HHHHHHHHHHHHHhhhH
Q 046233 497 THEVISAAYQLLQKNKE 513 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~~ 513 (518)
++++|++|.+.+.....
T Consensus 174 v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 174 TQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999998876543
No 73
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=5.4e-22 Score=187.83 Aligned_cols=167 Identities=20% Similarity=0.209 Sum_probs=119.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC--CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC------CCcchh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP--TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG------FGLGHE 411 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~--~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~------~gLg~~ 411 (518)
.++|+|+|.+|||||||+++|++... .+..++++|.......+....+..+.||||||+....... ..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 45899999999999999999998762 5577788887766555543335789999999975531110 123345
Q ss_pred hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHHh-------
Q 046233 412 FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQA------- 481 (518)
Q Consensus 412 fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~~------- 481 (518)
+++....+|++|||+|+++....... .+..++.. ..+|+++|+||+|+....+. .+.+.+.+..
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~l~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~ 182 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELDR-RMIEWFAP-----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA 182 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHGG-----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHHH-HHHHHHHh-----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence 56666668999999999986554433 34445543 46899999999999865432 2334444443
Q ss_pred cCCceEEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 482 RGIEPFCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 482 ~g~~i~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
..++++++||+++.||++|+++|.+.+....
T Consensus 183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 183 GKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp SCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 3568999999999999999999999987654
No 74
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=1.5e-21 Score=197.91 Aligned_cols=165 Identities=24% Similarity=0.310 Sum_probs=126.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc--c-cCCCcchhhhccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA--H-QGFGLGHEFLRHT 416 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega--s-~~~gLg~~fLr~I 416 (518)
..|+++|.||||||||+|+|++.+.. +..++.||.....+.+....+.+++||||||+.+.. + .+..+...+..++
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 37999999999999999999998876 478889999888888887646899999999997643 1 0111223344567
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-hcC--CceEEEeccC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-ARG--IEPFCMSAVK 493 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-~~g--~~i~~ISAkt 493 (518)
..+|++|+|+|+++..+..+...|...+.. .+.|+++|+||+|+...........+.+. ..+ .+++++||++
T Consensus 91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred hcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 889999999999998887776665555553 36899999999999833333344444443 333 6899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 046233 494 REGTHEVISAAYQLLQK 510 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~ 510 (518)
+.|+++|+++|.+.++.
T Consensus 166 g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 166 GANLDELVKTILKYLPE 182 (308)
T ss_dssp TBSHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 99999999999998754
No 75
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=1.9e-21 Score=177.37 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=113.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.++. ...+.+|||||+..... + +..++..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----L---RPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT----T---GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH----H---HHHhccCC
Confidence 48999999999999999999976542 3333333333223333332 24678999999865321 2 23346679
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------------chHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-------------KWPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-------------~~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.++.... .|...+..+. ...|+++|+||+|+..... ..++........+.
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 154 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCc
Confidence 9999999999987777765 4666666543 2789999999999975421 12233444445565
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
++++|||+++.|+++++++|.+.+....
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 155 KYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred EEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 8999999999999999999999886543
No 76
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=181.95 Aligned_cols=163 Identities=12% Similarity=0.002 Sum_probs=112.4
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++........+..+.+.....+.++. ...+.||||||+... ...+..++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~ 99 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-------RSIAKSYFR 99 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC-------HHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-------hhhHHHHHh
Confidence 346999999999999999999998764322223223333334444442 246999999997542 223445567
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC------cccc-hHHHHHHHHhcCCceEEEe
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE------AYEK-WPSFKEKLQARGIEPFCMS 490 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~------~~e~-~eel~~~l~~~g~~i~~IS 490 (518)
.+|++|+|+|+++..++..+..|...+..+.. ...|++||+||+|+.. .... .+.........++++++||
T Consensus 100 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 177 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETS 177 (199)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECC
T ss_pred hCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEee
Confidence 79999999999998777777777666664432 3689999999999962 2222 2334444555688999999
Q ss_pred ccCCCCHHHHHHHHHHHHHh
Q 046233 491 AVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 491 AktgeGI~eL~~~L~e~L~~ 510 (518)
|+++.||++++.+|.+.+.+
T Consensus 178 A~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 178 AKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999988753
No 77
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=7.6e-21 Score=176.20 Aligned_cols=159 Identities=14% Similarity=0.072 Sum_probs=115.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||+++|++... ...+..|+.......+.++. ...+.||||||+.+... + +..+++.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----~---~~~~~~~ 89 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----L---RPLSYPM 89 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT----T---GGGGCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH----H---HHHhcCC
Confidence 45899999999999999999998753 23444444433333444442 25789999999865322 2 3344667
Q ss_pred cCceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc------------c-chHHHHHHHHhcCC
Q 046233 419 CSALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAY------------E-KWPSFKEKLQARGI 484 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~------------e-~~eel~~~l~~~g~ 484 (518)
+|++|+|+|++++.++..+. .|...+..+. .+.|++||+||+|+.... . ..++..+.....++
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 166 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA 166 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence 99999999999987777765 5666666543 378999999999997632 1 12344444555566
Q ss_pred -ceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 485 -EPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 485 -~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++++|||+++.||++++++|.+.+.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=3.8e-21 Score=172.25 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=110.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|||||||+++|++.... ...| |.......+.+. ...+.+|||||+... ...+..++..+|+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~-~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~ 70 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYK-NISFTVWDVGGQDKI-------RPLWRHYFQNTQG 70 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECS-SCEEEEEECCCCGGG-------HHHHHHHTTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEEC-CEEEEEEEcCCChhh-------HHHHHHHhccCCE
Confidence 7899999999999999999876542 2222 444444455554 578999999998552 2223345678999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCCCC
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKREG 496 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktgeG 496 (518)
+++|+|++++.++.....+...+... ....+.|+++|+||+|+..... ..++.+.+.. .++++++|||+++.|
T Consensus 71 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 71 LIFVVDSNDRERVNEAREELMRMLAE-DELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhc-hhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 99999999987777665554444321 1234789999999999976432 2344443322 245799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
No 79
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.86 E-value=2.2e-21 Score=182.65 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=116.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++... ...+..|+.......+.++. ...+.||||||+..... + +..++..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR----L---RPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH----H---HHhhccCC
Confidence 5899999999999999999998654 23444444433333444442 24799999999865322 2 23346679
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---------chHHHHHHHHhcCC-ceEE
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE---------KWPSFKEKLQARGI-EPFC 488 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---------~~eel~~~l~~~g~-~i~~ 488 (518)
|++|+|+|++++.++..+. .|..++..+. ...|++||+||+|+..... ..++..+.....+. ++++
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE 158 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence 9999999999987777765 5666666553 3789999999999976432 23444444555564 8999
Q ss_pred EeccCCCCHHHHHHHHHHHHHhhh
Q 046233 489 MSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
+||+++.||+++|++|.+.+....
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 159 CSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred ccCCCCCCHHHHHHHHHHHHhhhh
Confidence 999999999999999999887654
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=1.7e-21 Score=177.51 Aligned_cols=158 Identities=15% Similarity=0.083 Sum_probs=105.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|+..... ..+..|+.......+.++ ....+.+|||||+.+.. ..+..+++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 80 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRGA 80 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccCC
Confidence 58999999999999999999986532 333333322221112222 12467799999986532 2233456679
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-----------chHHHHHHHHhcCC-ce
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-----------KWPSFKEKLQARGI-EP 486 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-----------~~eel~~~l~~~g~-~i 486 (518)
|++++|+|++++.++..+. .|...+..+. .+.|+++|+||+|+..... ..++..+.....+. ++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 157 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY 157 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence 9999999999987777765 5666666553 3789999999999976433 22334444445565 89
Q ss_pred EEEeccCCCCHHHHHHHHHHHHH
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++|||+++.|++++|++|.+.+.
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 158 IECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 81
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=5e-21 Score=178.63 Aligned_cols=154 Identities=23% Similarity=0.290 Sum_probs=114.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|++.... .+ .+|..+....+.++ +..+.+|||||+..... + +..+++.+|
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~----~---~~~~~~~~d 92 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIG-NIKFTTFDLGGHIQARR----L---WKDYFPEVN 92 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEET-TEEEEEEECCCSGGGTT----S---GGGGCTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEEC-CEEEEEEECCCCHHHHH----H---HHHHHhcCC
Confidence 38999999999999999999987542 22 34555666777776 48999999999865321 2 333456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh------------cCCceEE
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA------------RGIEPFC 488 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~------------~g~~i~~ 488 (518)
++++|+|++++.++.....+...+... ....+.|+++|+||+|+... ...+++.+.+.. .++++++
T Consensus 93 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 93 GIVFLVDAADPERFDEARVELDALFNI-AELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHcc-hhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccccceEEEEE
Confidence 999999999988877776655555322 12357899999999999863 223455555432 2457999
Q ss_pred EeccCCCCHHHHHHHHHHH
Q 046233 489 MSAVKREGTHEVISAAYQL 507 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~ 507 (518)
|||+++.|+++++++|.+.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 9999999999999999764
No 82
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=3e-21 Score=181.53 Aligned_cols=155 Identities=25% Similarity=0.294 Sum_probs=110.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+++|.+|||||||+++|++.... .+ .+|+.+..+.+.++ +..+.+|||||+..... + +..+++.+|
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~----~---~~~~~~~~d 94 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIA-GMTFTTFDLGGHIQARR----V---WKNYLPAIN 94 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEET-TEEEEEEEECC----CC----G---GGGGGGGCS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEEC-CEEEEEEECCCcHhhHH----H---HHHHHhcCC
Confidence 48999999999999999999986542 22 23555566777776 47999999999865322 2 334456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----------------cC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----------------RG 483 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----------------~g 483 (518)
++|+|+|++++.++.....+...+.... ...++|+++|+||+|+... ...+++.+.+.. ..
T Consensus 95 ~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 95 GIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCcccc-CCHHHHHHHhCcccccccccccccccccCce
Confidence 9999999999888777666555543221 2357899999999999763 234555555542 24
Q ss_pred CceEEEeccCCCCHHHHHHHHHHHH
Q 046233 484 IEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 484 ~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
+++++|||+++.||+++|++|.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999998653
No 83
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.85 E-value=7.4e-22 Score=181.69 Aligned_cols=161 Identities=21% Similarity=0.206 Sum_probs=116.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCc-chhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGL-GHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gL-g~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++... .+..++++|.+...+.+.++ +..+.+|||||+.+.......+ ....+.+++.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-GMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 83 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-CeEEEEEECCCcccchhHHHHHHHHHHHHHHHh
Confidence 4799999999999999999998764 35778888988877888876 5679999999986532211001 0112345788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|+++..++... .|..++.... ..++|+++|+||+|+....... ....++++++|||+++.||+
T Consensus 84 ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~--~~~~p~ilv~NK~Dl~~~~~~~------~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 84 ADRVLFMVDGTTTDAVDPA-EIWPEFIARL--PAKLPITVVRNKADITGETLGM------SEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp CSEEEEEEETTTCCCCSHH-HHCHHHHHHS--CTTCCEEEEEECHHHHCCCCEE------EEETTEEEEECCTTTCTTHH
T ss_pred CCEEEEEEECCCCCCHHHH-HHHHHHHHhc--ccCCCEEEEEECccCCcchhhh------hhccCCceEEEeCCCCCCHH
Confidence 9999999999987776543 3444444332 2468999999999996432111 11135689999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
+++++|.+.+...
T Consensus 155 ~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 155 VLRNHLKQSMGFD 167 (172)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887643
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4e-21 Score=177.35 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=114.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
...+|+++|.+|||||||+++|++.... . + ..|.......+.++ +..+.+|||||+.+.. ..+..+++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~-~-~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 83 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-H-T-SPTIGSNVEEIVIN-NTRFLMWDIGGQESLR-------SSWNTYYTN 83 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-E-E-ECCSCSSCEEEEET-TEEEEEEECCC----C-------GGGHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-c-C-cCCCccceEEEEEC-CEEEEEEECCCCHhHH-------HHHHHHhcC
Confidence 3468999999999999999999976542 1 1 22333444555665 5789999999986522 223344677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVK 493 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAkt 493 (518)
+|++|+|+|++++.++.....+...+.... ...+.|+++|+||+|+..... .+++.+.+. ..++++++|||++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 999999999999988887766665554321 125789999999999976432 344444443 2356899999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 046233 494 REGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~~~ 512 (518)
+.|+++++++|.+.+....
T Consensus 162 g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp TBTHHHHHHHHHHHHCC--
T ss_pred CcCHHHHHHHHHHHHHHHh
Confidence 9999999999999886543
No 85
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.5e-21 Score=202.66 Aligned_cols=125 Identities=32% Similarity=0.541 Sum_probs=111.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
-.++|+|||+||||||||+|+|+++++.+++|||||++|+.|++.+. +.+++++||||++++++.+.+++.+|+.+++.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~-~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-GAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET-TEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC-CcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999998 68999999999999999999999999999999
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
||++++|+|+++ +..+++.+..+|..+...+..+|.++++||+|..
T Consensus 150 ad~il~vvD~~~--p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNK--PLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTS--HHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCc--cHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999999999985 5778888999999888878889999999999974
No 86
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.85 E-value=6.7e-22 Score=195.89 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=118.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc------CCCcchhhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ------GFGLGHEFL 413 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~------~~gLg~~fL 413 (518)
+++|+|+|.+|||||||+|+|++....+.++|++|.+...+.+.+. +..+.||||||+...... ...+...++
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-EHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-TEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-CeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3689999999999999999999988788899999999999988887 468999999999764321 111222333
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccC
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAkt 493 (518)
. ...+|++|+|+|+++. +....+..++.. ..+|+++|+||+|+.........+.......+++++++||++
T Consensus 80 ~-~~~~d~vi~VvDas~~---~~~~~l~~~l~~-----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 I-DLEYDCIINVIDACHL---ERHLYLTSQLFE-----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp H-HSCCSEEEEEEEGGGH---HHHHHHHHHHTT-----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGG
T ss_pred h-hCCCCEEEEEeeCCCc---hhHHHHHHHHHH-----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 1 1679999999999873 223334444432 368999999999997544332223333344578999999999
Q ss_pred CCCHHHHHHHHHHH
Q 046233 494 REGTHEVISAAYQL 507 (518)
Q Consensus 494 geGI~eL~~~L~e~ 507 (518)
+.|+++|+++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999875
No 87
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=6e-21 Score=181.85 Aligned_cols=162 Identities=15% Similarity=0.078 Sum_probs=116.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++.... ..+..|+.......+.++. ...+.||||||+..... + +..++..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN----V---RPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT----T---GGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH----H---HHHHcCC
Confidence 358999999999999999999987653 3333333322222333332 25789999999865322 2 2334567
Q ss_pred cCceEEEEeCCCCCCHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc-------------ccchHHHHHHHHhcCC
Q 046233 419 CSALVHVIDGSAEQPEFE-FDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA-------------YEKWPSFKEKLQARGI 484 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~-~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~-------------~e~~eel~~~l~~~g~ 484 (518)
+|++|+|+|++++.++.. +..|...+..+. .+.|++||+||+|+... ....++........++
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 999999999999888877 577777777653 47899999999999752 1223445555666678
Q ss_pred -ceEEEeccCCCC-HHHHHHHHHHHHHhhh
Q 046233 485 -EPFCMSAVKREG-THEVISAAYQLLQKNK 512 (518)
Q Consensus 485 -~i~~ISAktgeG-I~eL~~~L~e~L~~~~ 512 (518)
++++|||+++.| |+++|++|.+.+....
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 999999999998 9999999999886554
No 88
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.9e-21 Score=177.38 Aligned_cols=161 Identities=17% Similarity=0.087 Sum_probs=116.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++..... .+..|+.......+.++. ...+.+|||||+.. . ..+..++..+
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~~~~~~~ 99 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQREGHMRWG 99 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchhhhhccC
Confidence 589999999999999999999876432 233332222223344432 25699999999865 1 1233445669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCC-CH
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKRE-GT 497 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktge-GI 497 (518)
|++|+|+|++++.++..+..|..++..+.. ....|++||+||+|+...... .++..+.....++++++|||+++. |+
T Consensus 100 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 999999999998887777776666654321 247899999999999764333 344455555568899999999999 99
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
+++|++|.+.+.+.
T Consensus 179 ~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 179 TEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988653
No 89
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=4.8e-21 Score=174.92 Aligned_cols=159 Identities=20% Similarity=0.193 Sum_probs=110.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+++|.+|||||||+++|++.... .+ ..|.......+.++ +..+.+|||||+.... ..+..++..+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 86 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVV--TT-KPTIGFNVETLSYK-NLKLNVWDLGGQTSIR-------PYWRCYYADT 86 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE--EE-CSSTTCCEEEEEET-TEEEEEEEEC----CC-------TTGGGTTTTE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcC--cc-CCcCccceEEEEEC-CEEEEEEECCCCHhHH-------HHHHHHhccC
Confidence 458999999999999999999975441 11 12222334445554 5789999999986522 2234456779
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktg 494 (518)
|++++|+|++++.++.....+...+... ....+.|+++|+||+|+..... .+++.+.+.. .++++++|||+++
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQE-EELQDAALLVFANKQDQPGALS-ASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTS-STTSSCEEEEEEECTTSTTCCC-HHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcC-hhhCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEEccCCCC
Confidence 9999999999988877766555444321 1135789999999999976432 3444444432 2457999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
.|+++++++|.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 165 EGITEGLDWLIDVIKEE 181 (183)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 90
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.85 E-value=4.6e-21 Score=176.40 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=110.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+|+|.+|||||||+++|++.... ....|.......+.++ +..+.+|||||+.+.. ..+..+++.+|
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 90 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVIN-NTRFLMWDIGGQESLR-------SSWNTYYTNTE 90 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEET-TEEEEEEEESSSGGGT-------CGGGGGGTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEEC-CEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 58999999999999999999987541 1112333334445555 5789999999986522 22445567799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktge 495 (518)
++|+|+|+++..++.....+...+... .....+|+++|+||+|+..... .+++.+.+. ..++++++|||+++.
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKECMT-VAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhC-hhhCCCeEEEEEECCCcccCCC-HHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999988877766555544321 1135789999999999976422 334444432 225589999999999
Q ss_pred CHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQL 507 (518)
Q Consensus 496 GI~eL~~~L~e~ 507 (518)
|+++++++|.+.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=6.8e-21 Score=176.57 Aligned_cols=161 Identities=21% Similarity=0.208 Sum_probs=112.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
...+|+|+|.+|||||||+++|++........ .|.......+... ...+.||||||+.+.. ..+..++..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 90 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKG-NVTIKLWDIGGQPRFR-------SMWERYCRG 90 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEET-TEEEEEEEECCSHHHH-------TTHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeC-CEEEEEEECCCCHhHH-------HHHHHHHcc
Confidence 34589999999999999999999876542222 2333334444444 5789999999986522 223344677
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVK 493 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAkt 493 (518)
+|++|+|+|+++..++.....+...+... ....+.|++||+||+|+..... ..++.+.+.. .++++++|||++
T Consensus 91 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 91 VSAIVYMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCeeEEEEECCC
Confidence 99999999999988777665555444321 1125789999999999976432 2334333321 245789999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 046233 494 REGTHEVISAAYQLLQKN 511 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~~ 511 (518)
+.||++++++|.+.+...
T Consensus 169 g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999877543
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.85 E-value=2.6e-21 Score=182.87 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=111.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC--ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD--STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~--~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
..+|+|+|.+|||||||+++|++........+..+.......+....+ ..+.||||||+..... +.. ..+.
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~---~~~~ 83 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV----LKD---VYYI 83 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC----CCH---HHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch----HHH---HHhh
Confidence 358999999999999999999976543211111111111111222211 4699999999754221 222 3355
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchH-HHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWP-SFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~e-el~~~l~~~g~~i~~ISAktgeG 496 (518)
.+|++|+|+|+++..++..+..|...+..... ...|+++|+||+|+........ .........++++++|||+++.|
T Consensus 84 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 84 GASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 69999999999998777777766666654432 3589999999999986544333 33344455688999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q 046233 497 THEVISAAYQLLQKNK 512 (518)
Q Consensus 497 I~eL~~~L~e~L~~~~ 512 (518)
+++++++|.+.+....
T Consensus 162 v~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 162 FGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987654
No 93
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.85 E-value=2.2e-21 Score=178.28 Aligned_cols=162 Identities=23% Similarity=0.348 Sum_probs=119.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++.......++++|.++..+.+.+. +..+.+|||||+....... ..+...+++. ..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~ 85 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-GEKFKVVDLPGVYSLTANSIDEIIARDYIIN-EK 85 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-TEEEEEEECCCCSCCSSSSHHHHHHHHHHHH-HC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC-CcEEEEEECCCcCccccccHHHHHHHHHHhc-cC
Confidence 489999999999999999999877666778888888888888876 5789999999987642110 0122233322 35
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
++++++|+|+++ ......+..++.. .+.|+++|+||+|+...........+.....+++++++||+++.|++
T Consensus 86 ~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 86 PDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 157 (188)
T ss_dssp CSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHH
Confidence 899999999975 3334444444442 46899999999999754332223334444457899999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 046233 499 EVISAAYQLLQKNK 512 (518)
Q Consensus 499 eL~~~L~e~L~~~~ 512 (518)
+++++|.+.+....
T Consensus 158 ~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 158 ELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
No 94
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.84 E-value=1.7e-20 Score=175.97 Aligned_cols=158 Identities=19% Similarity=0.135 Sum_probs=112.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++...... +..|+.......+.++. ...+.||||||+.+.. ..+..+++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCchhHH-------HHHHHhcCCC
Confidence 4899999999999999999998765332 32233222223344442 2478999999975522 1233456779
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------------chHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-------------KWPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-------------~~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.++..+ ..|...+..+. .+.|+++|+||+|+..... ..++..+.....+.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAF 174 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCc
Confidence 999999999988777766 45666665543 3689999999999976421 12234444445565
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++++|||+++.||++++++|.+.+.
T Consensus 175 ~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 175 GYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998764
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.84 E-value=7.1e-21 Score=176.00 Aligned_cols=159 Identities=22% Similarity=0.169 Sum_probs=110.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+++|.+|||||||+++|++.... .+ ..|.......+.++ ...+.+|||||+... ...+..++..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~-~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 84 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS--HI-TPTQGFNIKSVQSQ-GFKLNVWDIGGQRKI-------RPYWRSYFENT 84 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE--EE-EEETTEEEEEEEET-TEEEEEEECSSCGGG-------HHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cc-cCcCCeEEEEEEEC-CEEEEEEECCCCHHH-------HHHHHHHhCCC
Confidence 358999999999999999999986421 11 11222223345555 578999999998542 22344556789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAktg 494 (518)
|++++|+|++++.++.....+...+.. .....+.|+++|+||+|+..... .+++.+.+. ..++++++|||+++
T Consensus 85 ~~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 85 DILIYVIDSADRKRFEETGQELTELLE-EEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHTT-CGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEEEccCCCC
Confidence 999999999998777666554443321 11235789999999999986533 334444432 12467999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
.|++++|++|.+.+.+.
T Consensus 163 ~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 163 EGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TTHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999877543
No 96
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=2.4e-20 Score=173.35 Aligned_cols=157 Identities=17% Similarity=0.069 Sum_probs=114.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++........+ |.......+.++. ...+.||||||+.... ++..+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------FAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSCCHH------------HHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEEEEEEEEECCCChhhh------------eecCC
Confidence 4899999999999999999998765332222 2222233445542 2467889999975411 45569
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC--ccc-chHHHHHHHHhcC-CceEEEeccCCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE--AYE-KWPSFKEKLQARG-IEPFCMSAVKRE 495 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~--~~e-~~eel~~~l~~~g-~~i~~ISAktge 495 (518)
|++++|+|++++.++..+..|...+..+. .....|++||+||+|+.. ... ..++..+.....+ +++++|||+++.
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTS-CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 99999999999888887777777666442 124689999999999952 222 2344555556665 899999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q 046233 496 GTHEVISAAYQLLQKNK 512 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~~ 512 (518)
||+++|++|.+.+...+
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999876543
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.84 E-value=2.1e-20 Score=172.43 Aligned_cols=160 Identities=21% Similarity=0.174 Sum_probs=114.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
...+|+++|.+|||||||+++|+..... ...| |.......+.+. ...+.+|||||+..... .+..+++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~-------~~~~~~~~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYK-NISFEVWDLGGQTGVRP-------YWRCYFSD 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEET-TEEEEEEEECCSSSSCC-------CCSSSSTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEEC-CEEEEEEECCCCHhHHH-------HHHHHhhc
Confidence 3468999999999999999999875432 1112 333344455555 57899999999865322 23344667
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-----hcCCceEEEeccC
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-----ARGIEPFCMSAVK 493 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-----~~g~~i~~ISAkt 493 (518)
+|++|+|+|++++.++.....+...+... ....+.|+++|+||+|+..... ..++.+.+. ..++++++|||++
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDE-DELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTC-STTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhh-hhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999988877765544444321 2235789999999999976532 234444332 1245799999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 046233 494 REGTHEVISAAYQLLQKN 511 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~~ 511 (518)
+.|+++++++|.+.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999988754
No 98
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=1.4e-20 Score=173.91 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=106.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC--CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc------cCCCcchh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP--TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH------QGFGLGHE 411 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~--~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas------~~~gLg~~ 411 (518)
..+|+|+|.+|||||||+++|++... .....+.+|...... ..+ ..+.+|||||+..... ....+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--IIN--DELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EET--TTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EEC--CcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 46899999999999999999998752 334555656544332 233 4799999999654211 11112334
Q ss_pred hhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch---HHHHHHHHh-cCCceE
Q 046233 412 FLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQA-RGIEPF 487 (518)
Q Consensus 412 fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~---eel~~~l~~-~g~~i~ 487 (518)
+++....+|++++|+|+++..+..+.. +..++.. ...|+++|+||+|+....+.. +++.+.+.. .+++++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELI 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceE
Confidence 455545569999999999887766644 3344442 468999999999998754432 233333332 257899
Q ss_pred EEeccCCCCHHHHHHHHHHHHH
Q 046233 488 CMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++||+++.|+++++++|.+.++
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998774
No 99
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=2.1e-20 Score=176.16 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=110.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++..... .+..|+.......+.++. ...+.||||||+.+.. ..+..++..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCT-------TTGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHhhcCCC
Confidence 489999999999999999999876532 233333322223344442 2478999999986532 2233456779
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc------------c-hHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE------------K-WPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e------------~-~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.++..+ ..|...+..+. ..+|+++|+||+|+..... . .++........+.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 174 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAY 174 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCC
Confidence 999999999987777666 45666665443 3689999999999975421 1 1223333334455
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
++++|||+++.||++|+++|.+.+...
T Consensus 175 ~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 175 DYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999987543
No 100
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=178.81 Aligned_cols=161 Identities=19% Similarity=0.152 Sum_probs=104.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++.... ..+..|+.......+.++. ...+.||||||+.+... + +...+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----~---~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR----L---RPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH----H---HHHHhccC
Confidence 58999999999999999999986542 3333344333333444442 23789999999765322 2 22345679
Q ss_pred CceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------------chHHHHHHHHhcCC-
Q 046233 420 SALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-------------KWPSFKEKLQARGI- 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-------------~~eel~~~l~~~g~- 484 (518)
|++|+|+|++++.++..+. .|...+..+. ...|++||+||+|+..... ..++........++
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 183 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAV 183 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCC
Confidence 9999999999887777664 4666665443 4689999999999976431 12333444555566
Q ss_pred ceEEEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 485 EPFCMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 485 ~i~~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
++++|||+++.||+++|++|.+.+.+.+
T Consensus 184 ~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 184 AYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999887654
No 101
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=2.5e-20 Score=171.18 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=112.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc------ccCCCcchhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA------HQGFGLGHEF 412 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega------s~~~gLg~~f 412 (518)
.++|+|+|.+|||||||+++|++... .....+.+|...... .. ...+.+|||||+.... .....+...+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY--LV--NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE--EE--TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE--EE--CCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 35899999999999999999998763 234555555544332 22 3579999999964321 1111233445
Q ss_pred hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHHhc-CCceEE
Q 046233 413 LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQAR-GIEPFC 488 (518)
Q Consensus 413 Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~~~-g~~i~~ 488 (518)
++....++++++|+|++......... +..++... +.|+++|+||+|+....+. .+.+.+.+... .+++++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP 172 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHH-HHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence 55666679999999998865554443 44555532 6899999999999865432 23334444442 469999
Q ss_pred EeccCCCCHHHHHHHHHHHHHh
Q 046233 489 MSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+||+++.||++++++|.+.+.+
T Consensus 173 ~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 173 TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCTTTCTTHHHHHHHHHHHHC-
T ss_pred EecCCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999998754
No 102
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=1.3e-20 Score=186.58 Aligned_cols=159 Identities=23% Similarity=0.305 Sum_probs=119.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|++....+.++|++|.....+.+... +..+.||||||+....... ..+...|+.. ..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~ 83 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-GYTINLIDLPGTYSLGYSSIDEKIARDYLLK-GD 83 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-TEEEEEEECCCCSSCCSSSHHHHHHHHHHHH-SC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC-CeEEEEEECCCcCccCCCCHHHHHHHHHHhh-cC
Confidence 589999999999999999999988778889999998888888875 5789999999987533210 1122334432 57
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++++|+|+++... ...+...+.. ...|+++|+||+|+.................+++++++||+++.|++
T Consensus 84 ~d~ii~V~D~t~~~~---~~~~~~~l~~-----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (258)
T 3a1s_A 84 ADLVILVADSVNPEQ---SLYLLLEILE-----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE 155 (258)
T ss_dssp CSEEEEEEETTSCHH---HHHHHHHHHT-----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred CCEEEEEeCCCchhh---HHHHHHHHHh-----cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence 999999999997533 2223344432 36899999999999754332222344444557899999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
+|+++|.+.+.
T Consensus 156 el~~~i~~~~~ 166 (258)
T 3a1s_A 156 ELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998775
No 103
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=173.19 Aligned_cols=161 Identities=18% Similarity=0.087 Sum_probs=113.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++... ...+..|+.......+.++. ...+.||||||+..... + .+++..+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~----~~~~~~~ 92 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----C----ERYLNWA 92 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----T----HHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----H----HHHHhhC
Confidence 5899999999999999999998763 23444443332222333332 24788999999865321 2 2345669
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCC-CCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEec-cCCCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSP-EIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSA-VKREG 496 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~-~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISA-ktgeG 496 (518)
|++|+|+|++++.++..+..|..++..+.. .....|++||+||+|+...... .++..+.....++++++||| +++.|
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 999999999988777777766666654310 1146899999999999754433 34455566666889999999 89999
Q ss_pred HHHHHHHHHHHHHh
Q 046233 497 THEVISAAYQLLQK 510 (518)
Q Consensus 497 I~eL~~~L~e~L~~ 510 (518)
|+++|++|.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987753
No 104
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.83 E-value=1.9e-20 Score=172.70 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=111.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+++|.+|||||||+++|++.... ..+..|+.......+.++. ...+.+|||||+..... + ...++..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~---~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT----T---GGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh----h---HHhhcCCC
Confidence 58999999999999999999986543 2233232222222333332 25789999999855321 2 23345679
Q ss_pred CceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------cc-chHHHHHHHHhcC-C
Q 046233 420 SALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEA------------YE-KWPSFKEKLQARG-I 484 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~------------~e-~~eel~~~l~~~g-~ 484 (518)
|++|+|+|++++.++..+ ..|..++..+. ...|+++|+||+|+... .. ..++..++....+ +
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 156 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA 156 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCc
Confidence 999999999998777776 55666666543 36899999999999742 11 1233444444445 6
Q ss_pred ceEEEecc-CCCCHHHHHHHHHHHHH
Q 046233 485 EPFCMSAV-KREGTHEVISAAYQLLQ 509 (518)
Q Consensus 485 ~i~~ISAk-tgeGI~eL~~~L~e~L~ 509 (518)
++++|||+ ++.||+++|++|.+.+.
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 89999999 68999999999998764
No 105
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=8.2e-21 Score=190.04 Aligned_cols=158 Identities=21% Similarity=0.376 Sum_probs=117.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc--CCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ--GFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~--~~gLg~~fLr~Ier 418 (518)
.+|+|+|.||||||||+|+|++....+.++|++|..+..+.+.. +..+.+|||||+...... ...+...+++. ..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~-~~ 80 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS-QR 80 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT-TC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCChHHHHHHHHHhc-CC
Confidence 58999999999999999999998878899999999887777654 568999999998753211 11233344432 46
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|+++.. ....|..++.. ..+|+++|+||+|+............+....++++++|||+++.||+
T Consensus 81 ~d~vi~V~D~t~~e---~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 81 ADSILNVVDATNLE---RNLYLTTQLIE-----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp CSEEEEEEEGGGHH---HHHHHHHHHHH-----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CCEEEEEecCCchH---hHHHHHHHHHh-----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 99999999998742 23334444432 36899999999999754322222333334457899999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
+|+++|.+.+.
T Consensus 153 el~~~i~~~~~ 163 (272)
T 3b1v_A 153 QVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 106
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.83 E-value=1.8e-20 Score=176.72 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=112.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+++|.+|||||||+++|+.... ...+..|+.......+.++. ...+.||||||+.... ..+..+++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhcc
Confidence 35899999999999999999997654 33444455444444444442 2356699999985522 223445677
Q ss_pred cCceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------------chHHHHHHHHhcCC
Q 046233 419 CSALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-------------KWPSFKEKLQARGI 484 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-------------~~eel~~~l~~~g~ 484 (518)
+|++|+|+|++++.++.... .|...+..+. .+.|++||+||+|+..... ..++........+.
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCC
Confidence 99999999999988877765 5666666543 4689999999999976432 12233344444454
Q ss_pred -ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 485 -EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 485 -~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
++++|||+++.||+++|++|.+.+
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 699999999999999999998753
No 107
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3e-20 Score=178.89 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=113.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
..+|+|||.+|||||||+++|++....+ ..++.++.+.....+.++.. ..+.+|||+|+... ...+. ..+++
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---~~~l~---~~~~~ 110 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---NEWLH---DHCMQ 110 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---HHHHH---HCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---hhhHH---HHHHh
Confidence 4689999999999999999999754433 33444433333344555422 36789999997431 00111 12345
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.++++|+|+|+++..++.....|...+.... ...++|+|||+||+||....... ++........++++++|||+++.|
T Consensus 111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 111 VGDAYLIVYSITDRASFEKASELRIQLRRAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHHHTSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 6899999999999888877777766665321 12468999999999997543332 233333344578999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
|+++|++|.+.+...
T Consensus 190 v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 190 VKELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988644
No 108
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=7e-20 Score=171.59 Aligned_cols=165 Identities=15% Similarity=0.098 Sum_probs=112.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
..+|+|||.+|||||||+++|++....+ ..++.++.+.....+.++.. ..+.+|||+|.... ...+...+ ++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---~~~~~~~~---~~ 79 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE---NEWLHDHC---MQ 79 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-------CTTGGGH---HH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch---hhhHHHhh---cc
Confidence 3689999999999999999999754432 34444444433344555422 36789999996431 11132222 34
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-HHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-PSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.++++++|+|+++..++.....|...+..... ..+.|+++|+||+|+....... ++........++++++|||+++.|
T Consensus 80 ~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~ 158 (192)
T 2cjw_A 80 VGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158 (192)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCC
Confidence 58999999999998888877777666654321 2468999999999997543332 222233344577999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 046233 497 THEVISAAYQLLQKN 511 (518)
Q Consensus 497 I~eL~~~L~e~L~~~ 511 (518)
|+++|++|.+.+...
T Consensus 159 v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 159 VKELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887543
No 109
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.83 E-value=2.7e-20 Score=173.96 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=107.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+|+|.+|||||||+++|+..... . ...|+......+.+. ...+.+|||||+.... ..+..++..+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~--~~~t~~~~~~~~~~~-~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-T--TIPTIGFNVETVEYK-NICFTVWDVGGQDKIR-------PLWRHYFQNT 97 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-E--EEEETTEEEEEEEET-TEEEEEEECC-----C-------TTHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-c--cCCcCceeEEEEEEC-CEEEEEEECCCCHhHH-------HHHHHHhccC
Confidence 358999999999999999999876432 1 122443344445554 5789999999986522 2233446679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktg 494 (518)
|++|+|+|++++.++.....+...+... ....+.|++||+||+|+..... .+++.+.+.. .++++++|||+++
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~-~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQE-DELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcc-cccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEECcCCCc
Confidence 9999999999988777665554444321 1234789999999999976532 3344443332 2457999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 046233 495 EGTHEVISAAYQLLQ 509 (518)
Q Consensus 495 eGI~eL~~~L~e~L~ 509 (518)
.|+++++++|.+.+.
T Consensus 176 ~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 176 TGLYDGLDWLSHELS 190 (192)
T ss_dssp BTHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 110
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.83 E-value=2.2e-21 Score=204.15 Aligned_cols=160 Identities=33% Similarity=0.501 Sum_probs=101.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec---------------------C--CceEEEEcCCCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD---------------------Y--DSTMVVADLPGL 398 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~---------------------~--~~~l~I~DTPGl 398 (518)
+|+|||.||||||||+|+|++....++++||||+.++.+.+.+. . ..++.||||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 78999999999999999999988667899999999999975421 1 147999999999
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCC-----------CCHHHHHHHHHHHHhcC-------------------
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAE-----------QPEFEFDAVRLELEMFS------------------- 448 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~-----------~s~e~~~~L~~eL~~~~------------------- 448 (518)
..+++.+++++..|+.+++.||++++|+|+++. ++..+++.|..+|..++
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~~~~ 161 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQK 161 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTTSSC
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcC
Confidence 998888888999999999999999999999886 67777766666664330
Q ss_pred -----------------------------C-------------------CCCCCCEEEEEeCCCCCCcccchHHHHHHHH
Q 046233 449 -----------------------------P-------------------EIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ 480 (518)
Q Consensus 449 -----------------------------~-------------------~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~ 480 (518)
. ....+|+|+|+||+|+. ....+..+.+.+.
T Consensus 162 ~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~~l~~~~~ 240 (397)
T 1wxq_A 162 IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIKRLVREEE 240 (397)
T ss_dssp CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHHHHHHHHh
Confidence 0 01248999999999987 3333455555555
Q ss_pred hcCCceEEEeccCCCCHHHHHH
Q 046233 481 ARGIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 481 ~~g~~i~~ISAktgeGI~eL~~ 502 (518)
..+.+++++||+.+.++.+|++
T Consensus 241 ~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 241 KRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HTTCEEEEECHHHHHHHHSCSS
T ss_pred hcCCcEEEEeccchhhHHHHHh
Confidence 4467899999999999987643
No 111
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.83 E-value=2.2e-21 Score=193.54 Aligned_cols=160 Identities=22% Similarity=0.315 Sum_probs=118.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhcc---
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRH--- 415 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~--- 415 (518)
.+|+|+|.+|||||||+|+|++....+++++++|.++..+.+.+. +..+.+|||||+....... ..+...+.++
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT-DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS-SCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC-CCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 489999999999999999999988777899999999988888876 5789999999997643211 0111122222
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKRE 495 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktge 495 (518)
.+.+|++|+|+|+++.. ....+..++... ++|+++|+||+|+.........+.......+++++++||+++.
T Consensus 83 ~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~ 154 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE---RNLYLTLQLLEL-----GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR 154 (274)
T ss_dssp HTCCSEEEEEEEGGGHH---HHHHHHHHHHHH-----TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred hcCCCEEEEEecCCChH---HHHHHHHHHHhc-----CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 26799999999998732 233344444432 6899999999999754332222333334457899999999999
Q ss_pred CHHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLLQ 509 (518)
Q Consensus 496 GI~eL~~~L~e~L~ 509 (518)
|+++|+++|.+.+.
T Consensus 155 gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 155 GIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987664
No 112
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=4e-20 Score=196.00 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=111.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRHT 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~I 416 (518)
+++|+|||.||||||||+|+|++.+.. +.++|++|.+...+.+.+. +..+.||||||+....... ..+...+..++
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY-GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET-TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC-CeEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 368999999999999999999988764 5889999999999998887 5789999999987532211 11334455668
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCC
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKRE 495 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktge 495 (518)
+.||++|+|+|++...+..+. .+..+|+. .++|+++|+||+|+.... .......+...++ ++++|||++|.
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~-~i~~~l~~-----~~~p~ilv~NK~D~~~~~--~~~~~~~~~~lg~~~~~~iSA~~g~ 151 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE-SLADFLRK-----STVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNI 151 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH-HHHHHHHH-----HTCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTB
T ss_pred HhCCEEEEEEECCCCCCHHHH-HHHHHHHH-----cCCCEEEEEeCCCCcccc--HHHHHHHHHhcCCCCEEEEeccCCC
Confidence 889999999999886655443 34445543 368999999999986431 1122122334455 78999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
|+.+|+++|.+.++..
T Consensus 152 gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 152 NLDTMLETIIKKLEEK 167 (439)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcccc
Confidence 9999999999988743
No 113
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=8e-21 Score=180.46 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=114.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC--CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP--TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~--~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
.+|+|+|.+|||||||+++|+.... .......+|.......+... ...+.||||||+.... .+.. .++..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~----~~~~---~~~~~ 87 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-PIKFNVWDTAGQEKFG----GLRD---GYYIQ 87 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE-EEEEEEEEECSGGGTS----CCCH---HHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-EEEEEEEeCCChHHHh----HHHH---HHHhc
Confidence 5899999999999999999654332 22344445554433222111 3579999999975422 1333 34556
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|+++..++..+..|...+..+. .+.|+++|+||+|+...... .+........++++++|||+++.|++
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSC-GGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccccc-HHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999888777777777766543 37899999999999764332 23334445557899999999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
++|.+|.+.+...
T Consensus 164 ~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 164 KPFLWLARKLIGD 176 (221)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987654
No 114
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.82 E-value=2.6e-20 Score=194.42 Aligned_cols=155 Identities=35% Similarity=0.560 Sum_probs=120.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--------------------CceEEEEcCCCCcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--------------------DSTMVVADLPGLLE 400 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--------------------~~~l~I~DTPGlie 400 (518)
.+|+|||.||||||||+|+|++..+.+++|||+|+.|+.+.+.+.+ ...+.+|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 4799999999999999999999887789999999999999987642 24699999999999
Q ss_pred ccccCCCcchhhhccccccCceEEEEeCCCC----------CCHHHHHHHHHHHHhc-----------------------
Q 046233 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSAE----------QPEFEFDAVRLELEMF----------------------- 447 (518)
Q Consensus 401 gas~~~gLg~~fLr~IerADvlL~VVDaS~~----------~s~e~~~~L~~eL~~~----------------------- 447 (518)
+++.+.+++..|+.+++.||++++|+|+++. ++..++..+..+|..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 9998889999999999999999999999862 4555655554444200
Q ss_pred ----------------CC------------------CCCCCCEEEEEeCCCC--CCc--ccchHHHHHHHHhcCCceEEE
Q 046233 448 ----------------SP------------------EIAEKPYIVAFNKMDL--PEA--YEKWPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 448 ----------------~~------------------~l~~kPiIVVlNKiDL--~~~--~e~~eel~~~l~~~g~~i~~I 489 (518)
.+ .+..+|+++|+||+|. ... ....+.+++..+..+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 1345899999999974 332 334566666666667899999
Q ss_pred eccCCC
Q 046233 490 SAVKRE 495 (518)
Q Consensus 490 SAktge 495 (518)
||+...
T Consensus 242 SAk~E~ 247 (368)
T 2dby_A 242 SARLEA 247 (368)
T ss_dssp CHHHHH
T ss_pred echhHH
Confidence 998743
No 115
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.82 E-value=3e-20 Score=193.56 Aligned_cols=169 Identities=33% Similarity=0.455 Sum_probs=130.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC----------------ceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD----------------STMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~----------------~~l~I~DTPGliegas~ 404 (518)
.+|+|||.||||||||+|+|++....+++|||+|+.|+.+.+.+++. ..+.+|||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 47999999999999999999998877899999999999999888642 47999999999999888
Q ss_pred CCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhc---------------------------
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMF--------------------------- 447 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~--------------------------- 447 (518)
+++++..|+.+++.||++++|+|+++ .++..+++.+..+|.++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 88899999999999999999999986 25667776666555210
Q ss_pred ----------C---------------------CCCCCCCEEEEEeCCCCCC-cccchHHHHHHHHhcCCceEEEeccC--
Q 046233 448 ----------S---------------------PEIAEKPYIVAFNKMDLPE-AYEKWPSFKEKLQARGIEPFCMSAVK-- 493 (518)
Q Consensus 448 ----------~---------------------~~l~~kPiIVVlNKiDL~~-~~e~~eel~~~l~~~g~~i~~ISAkt-- 493 (518)
. .-+..+|+++|+||.|..- .......+++.....+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~ 242 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIES 242 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHH
Confidence 0 0134599999999998642 22345666666666678999999763
Q ss_pred --------------------CCCHHHHHHHHHHHHH
Q 046233 494 --------------------REGTHEVISAAYQLLQ 509 (518)
Q Consensus 494 --------------------geGI~eL~~~L~e~L~ 509 (518)
..|++.|+..++++|.
T Consensus 243 el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~ 278 (363)
T 1jal_A 243 EIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278 (363)
T ss_dssp HGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhC
Confidence 3788888888887765
No 116
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.82 E-value=4.3e-20 Score=198.63 Aligned_cols=162 Identities=20% Similarity=0.209 Sum_probs=101.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCc-chhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGL-GHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gL-g~~fLr~Ie 417 (518)
-.+|+|+|.||||||||+|+|++... .+.++++||.+.....+.++ +..+.||||||+.+....-..+ ....+.++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~ 311 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA 311 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEET-TEEEEEEC--------------------CCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence 35799999999999999999998754 46889999999988888886 5789999999996633221111 123455678
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-CCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-GIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-g~~i~~ISAktgeG 496 (518)
.||++|+|+|++++.+......+..++.... ++|+++|+||+|+...... . . +.+... ..++++|||+++.|
T Consensus 312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~~-~-~-~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 312 EADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANADA-L-I-RAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp SCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTHH-H-H-HHHHHHHTSCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccch-h-H-HHHHhcCCCceEEEEECCCCC
Confidence 8999999999999888765555555555432 6899999999999865432 1 1 223222 36899999999999
Q ss_pred HHHHHHHHHHHHH
Q 046233 497 THEVISAAYQLLQ 509 (518)
Q Consensus 497 I~eL~~~L~e~L~ 509 (518)
|++|+++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999887
No 117
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.82 E-value=5.5e-20 Score=174.51 Aligned_cols=160 Identities=16% Similarity=0.105 Sum_probs=112.2
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|+|.+|||||||+++|++.... ..+..|+.......+.++. ...+.||||||+..... + ...++.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~ 98 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----V---RPLSYP 98 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT----T---GGGGCT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH----H---HHhhcc
Confidence 3468999999999999999999987553 2233232222222334332 25799999999865321 2 223456
Q ss_pred ccCceEEEEeCCCCCCHHHH-HHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc------------ccc-hHHHHHHHHhcC
Q 046233 418 RCSALVHVIDGSAEQPEFEF-DAVRLELEMFSPEIAEKPYIVAFNKMDLPEA------------YEK-WPSFKEKLQARG 483 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~-~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~------------~e~-~eel~~~l~~~g 483 (518)
.+|++|+|+|++++.++..+ ..|..++..+. ...|++||+||+|+... ... .++..++.+..+
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 79999999999998777776 56666666543 36899999999999742 111 233444444445
Q ss_pred -CceEEEecc-CCCCHHHHHHHHHHHHH
Q 046233 484 -IEPFCMSAV-KREGTHEVISAAYQLLQ 509 (518)
Q Consensus 484 -~~i~~ISAk-tgeGI~eL~~~L~e~L~ 509 (518)
+++++|||+ ++.||+++|++|.+.+-
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 689999999 68999999999988764
No 118
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=6.5e-20 Score=196.28 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=119.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
..+|+|||.+|||||||+++|++... . ..++|+......+.+. +..+.||||||+.... ..+..+++.+
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~--~~~~T~~~~~~~~~~~-~~~~~l~Dt~G~~~~~-------~~~~~~~~~a 390 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-V--TTIPTVGFNVETVTYK-NVKFNVWDVGGQDKIR-------PLWRHYYTGT 390 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-C--CCCCCSSEEEEEEESS-SCEEEEEEECCCGGGS-------GGGGGGGTTC
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-C--CcCCccceeEEEEEeC-CEEEEEEECCCcHHHH-------HHHHHHhccC
Confidence 35899999999999999999998763 2 2345777777777775 5799999999976532 3355667889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-----cCCceEEEeccCC
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-----RGIEPFCMSAVKR 494 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-----~g~~i~~ISAktg 494 (518)
|++|+|||++++.++.....++..+... ....++|+|||+||+|+..... ..++...+.. .++++++|||++|
T Consensus 391 d~~i~V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 391 QGLIFVVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred CEEEEEEECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 9999999999988877776665555321 2235799999999999976432 2344443322 1446999999999
Q ss_pred CCHHHHHHHHHHHHHhhhH
Q 046233 495 EGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~~~ 513 (518)
.||+++|++|.+.+.....
T Consensus 469 ~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp BTHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHHhcCC
Confidence 9999999999998866543
No 119
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.81 E-value=2.5e-19 Score=184.86 Aligned_cols=168 Identities=27% Similarity=0.364 Sum_probs=125.7
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCC-cc-hhhhccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFG-LG-HEFLRHT 416 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~g-Lg-~~fLr~I 416 (518)
...+|+++|.+|||||||+++|++..+.+..++++|.....+.+... ...+.+|||||+......... +. ..+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG-YFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET-TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec-CceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 34689999999999999999999988777888999998888877765 578999999998763221110 00 1112223
Q ss_pred cccCceEEEEeCCCCC--CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCC
Q 046233 417 ERCSALVHVIDGSAEQ--PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKR 494 (518)
Q Consensus 417 erADvlL~VVDaS~~~--s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktg 494 (518)
..+|++|+|+|+++.. .......+..++.... .++|+++|+||+|+..... ++++.+.+...++++++|||++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDVADEEN-IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTTCCHHH-HHHHHHHHHHTTCCCEECBTTTT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc---CCCCEEEEEECcccCChHH-HHHHHHHHHhcCCCeEEEeCCCC
Confidence 3589999999998865 4555555555555332 2789999999999986543 34455555566789999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q 046233 495 EGTHEVISAAYQLLQKN 511 (518)
Q Consensus 495 eGI~eL~~~L~e~L~~~ 511 (518)
+|+++|+++|.+.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 120
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=3.1e-20 Score=188.31 Aligned_cols=163 Identities=25% Similarity=0.277 Sum_probs=117.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~Ier 418 (518)
.+|+|||.||||||||+|+|++.+..+ +..|.||.....+++... +.++.||||||+.+..+. +..+...+..+++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~-~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG-RRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC-CcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 379999999999999999999987754 677888888777776654 679999999998753221 01122334456788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
+|++|+|+|+++.....+ ..+...+.... .+.|+++|+||+|+......+....+.+ ....+++++||+++.|++
T Consensus 87 ad~il~VvD~~~~~~~~~-~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~ 161 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPED-ELVARALKPLV---GKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQVA 161 (301)
T ss_dssp CSEEEEEEETTSCCCHHH-HHHHHHHGGGT---TTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHHH
T ss_pred CCEEEEEEECCCCCChHH-HHHHHHHHhhc---CCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCHH
Confidence 999999999998655443 23334454331 3689999999999975433111222222 123478999999999999
Q ss_pred HHHHHHHHHHH
Q 046233 499 EVISAAYQLLQ 509 (518)
Q Consensus 499 eL~~~L~e~L~ 509 (518)
+|+++|.+.++
T Consensus 162 ~l~~~l~~~l~ 172 (301)
T 1wf3_A 162 ELKADLLALMP 172 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhcc
Confidence 99999987664
No 121
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.81 E-value=6.3e-20 Score=171.43 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=105.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEE--e--cCCceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVS--F--DYDSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~--~--~~~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
..+|+|+|.+|||||||+++|++..... +..+..+....+. + .....+.||||||+..... +......+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD----PTFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC----TTCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh----hhhhcccc
Confidence 3589999999999999999998743211 2222222222222 2 2346899999999865322 11000244
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------hHHHHHHHH-----hcC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------WPSFKEKLQ-----ARG 483 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------~eel~~~l~-----~~g 483 (518)
+..+|++|+|+|+++. ..+.+..+..++........+.|++||+||+|+...... .....+.+. ..+
T Consensus 93 ~~~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH 171 (196)
T ss_dssp HHTCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred cccCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence 5669999999999986 555666666666543212347899999999998763211 111222222 346
Q ss_pred CceEEEeccCCCCHHHHHHHHHHHH
Q 046233 484 IEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 484 ~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
+++++|||++ .||+++|..|.+.+
T Consensus 172 ~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 172 LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cceEEEEech-hhHHHHHHHHHHHh
Confidence 7899999999 99999999998764
No 122
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.81 E-value=4.3e-20 Score=187.03 Aligned_cols=165 Identities=17% Similarity=0.104 Sum_probs=120.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC-CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ-PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak-~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.+|+|+|.+|||||||+++|++.. .....++.+|+....+.+.+.....+.||||||+....... +.......++.+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~a 81 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENY--FTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHH--HTTTHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhh--hhhHHHHHhccC
Confidence 489999999999999999998764 34456888999988888887557899999999986531100 011122234679
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------hHHHHHHHHhcC---CceEEE
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------WPSFKEKLQARG---IEPFCM 489 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------~eel~~~l~~~g---~~i~~I 489 (518)
|++|+|+|+++..++.++..|..++..+.....+.|+++|+||+|+...... .+++.+.....+ ++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 9999999999999888887776665543222346899999999999873221 133444445555 799999
Q ss_pred eccCCCCHHHHHHHHHHHH
Q 046233 490 SAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L 508 (518)
||++ .++.++|..+.+.+
T Consensus 162 Sa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTT
T ss_pred eecC-ChHHHHHHHHHHHH
Confidence 9999 88999988877643
No 123
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=7.7e-20 Score=172.25 Aligned_cols=159 Identities=19% Similarity=0.145 Sum_probs=101.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
..+|+|+|.+|||||||+++|++... ...++.++ .....+.++. ...+.||||||+...... .+..++.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~ 77 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHESLRFQ------LLDRFKS 77 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCS--CEEEEEECSSTTCCEEEEEECCCCHHHHHH------HHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcc--eeeEEEEecCCCccEEEEEECCCChhHHHH------HHHHHHh
Confidence 35899999999999999999998763 34454333 3333455553 467999999998652210 1222366
Q ss_pred ccCceEEEEeCCCCC-CHHH-HHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHH------------
Q 046233 418 RCSALVHVIDGSAEQ-PEFE-FDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQ------------ 480 (518)
Q Consensus 418 rADvlL~VVDaS~~~-s~e~-~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~------------ 480 (518)
.+|++|+|+|+++.. .... ...|...+..........|++||+||+|+...... .+.+.+.+.
T Consensus 78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~ 157 (214)
T 2fh5_B 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPST 157 (214)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccc
Confidence 799999999998732 1222 22333333321112246899999999999865331 122222222
Q ss_pred -------h--------------c--CCceEEEeccCC------CCHHHHHHHHHHH
Q 046233 481 -------A--------------R--GIEPFCMSAVKR------EGTHEVISAAYQL 507 (518)
Q Consensus 481 -------~--------------~--g~~i~~ISAktg------eGI~eL~~~L~e~ 507 (518)
. . .+++++|||+++ .||+++|++|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 158 LDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 1 457999999999 9999999999875
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=8.2e-20 Score=193.44 Aligned_cols=165 Identities=20% Similarity=0.260 Sum_probs=115.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc----hhhhc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG----HEFLR 414 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg----~~fLr 414 (518)
..+|++||.||||||||+|+|++.... +.++++||.+.....+.++ +..+.||||||+.+.......+. ...++
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-QQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEET-TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC-CeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 358999999999999999999987764 5788999998887777776 56899999999865433211111 11234
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHh-----cCCceEE
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQA-----RGIEPFC 488 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~-----~g~~i~~ 488 (518)
+++.||++|+|+|+++..+.++.. |...+.. .++|+++|+||+|+...... .+++.+.+.. .++++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHH-HHHHHHH-----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 678899999999999988877764 3333332 46899999999999865432 2333333322 2579999
Q ss_pred EeccCCCCHHHHHHHHHHHHHhh
Q 046233 489 MSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+||++|.|++++++.|.+.+...
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999888754
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=6.8e-20 Score=181.51 Aligned_cols=163 Identities=22% Similarity=0.360 Sum_probs=117.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC--CCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG--FGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~--~gLg~~fLr~Ie 417 (518)
..+|+|+|.+|||||||+++|++....+..++++|.+...+.+.+. +..+.+|||||+....... ..+...|+. ..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-EKEFLVVDLPGIYSLTAHSIDELIARNFIL-DG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET-TEEEEEEECCCCSCCCSSCHHHHHHHHHHH-TT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC-CceEEEEeCCCccccccCCHHHHHHHHhhh-cc
Confidence 3589999999999999999999988777889999998888888876 5689999999987532211 001222221 25
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.+|++|+|+|+++.. .... +...+... ...|+++|+||+|+..............+..+++++++||+++.|+
T Consensus 81 ~~d~vi~v~D~~~~~--~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 81 NADVIVDIVDSTCLM--RNLF-LTLELFEM----EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp CCSEEEEEEEGGGHH--HHHH-HHHHHHHT----TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTH
T ss_pred CCcEEEEEecCCcch--hhHH-HHHHHHhc----CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCH
Confidence 799999999998742 2222 22333221 2389999999999864332222233333445789999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++++++|.+.+...
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987643
No 126
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=2.2e-19 Score=186.91 Aligned_cols=167 Identities=21% Similarity=0.296 Sum_probs=114.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc---hhhhccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG---HEFLRHT 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg---~~fLr~I 416 (518)
++.|+|+|++|||||||+|+|++....+.+++++|+++..+.+.++ +..+.+|||||++..... .+. ...+..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~-g~~v~l~DT~G~i~~lp~--~lve~f~~tl~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN-NRKIMLVDTVGFIRGIPP--QIVDAFFVTLSEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET-TEEEEEEECCCBCSSCCG--GGHHHHHHHHHGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC-CEEEEEEeCCCchhcCCH--HHHHHHHHHHHHH
Confidence 4459999999999999999999988777889999999999999987 478999999998653211 121 2335567
Q ss_pred cccCceEEEEeCCCCC--CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc--hHHHHHHHHhc---CCceEEE
Q 046233 417 ERCSALVHVIDGSAEQ--PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK--WPSFKEKLQAR---GIEPFCM 489 (518)
Q Consensus 417 erADvlL~VVDaS~~~--s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~--~eel~~~l~~~---g~~i~~I 489 (518)
..+|++++|+|++++. ....+..+...|..+. ...+|+|+|+||+|+...... ...+....... ..+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 8899999999998875 4455555555665543 246899999999999754311 11111112222 2468999
Q ss_pred eccCCCCHHHHHHHHHHHHHhh
Q 046233 490 SAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~~~ 511 (518)
||+++.|+++|+++|.+.+...
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHhccc
Confidence 9999999999999999987654
No 127
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=3.3e-21 Score=180.62 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=108.4
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec-CCceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD-YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~-~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+++|.+|||||||+++|++... ...+..|+.......+.++ ....+.+|||||+.+... .+..+++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~ 100 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYP 100 (204)
Confidence 345899999999999999999997654 2333334433333333332 124677999999865322 2333466
Q ss_pred ccCceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-------------hHHHHHHHHhcC
Q 046233 418 RCSALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-------------WPSFKEKLQARG 483 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-------------~eel~~~l~~~g 483 (518)
.+|++|+|+|++++.++.... .|...+..+. .+.|+++|+||+|+...... .++........+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 799999999999988777664 4555554322 37899999999999754311 122222333335
Q ss_pred C-ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 484 I-EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 484 ~-~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
+ ++++|||+++.||++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 5 899999999999999999998754
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.3e-19 Score=192.98 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=118.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCC----Ccchhhhc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGF----GLGHEFLR 414 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~----gLg~~fLr 414 (518)
..+|+++|.+|||||||+++|++... .+..+++||.+.....+.++ +..++||||||+.+...... ......+.
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-QQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET-TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC-CceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 45899999999999999999998753 45889999999888888876 56899999999865432211 11122345
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhc-----CCceEE
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQAR-----GIEPFC 488 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~-----g~~i~~ 488 (518)
+++.||++|+|+|+++.....+.. +..++.. .++|++||+||+|+...... .+++.+.+... .+++++
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~-~~~~~~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKR-IAGYAHE-----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHH-HHHHHHH-----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 678899999999999866654443 3444432 46899999999999864432 34444444433 579999
Q ss_pred EeccCCCCHHHHHHHHHHHHHhhh
Q 046233 489 MSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
|||++|.||++|+++|.+.+....
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999999886543
No 129
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.80 E-value=1.3e-19 Score=166.02 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=102.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccc-------cCCCcchhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAH-------QGFGLGHEF 412 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas-------~~~gLg~~f 412 (518)
+.+|+++|.+|||||||+++|++........+++|..... +.+. .+.+|||||+..... ....+...+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC---CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999987766667766654432 3333 799999999643110 001122233
Q ss_pred hcc-ccccCceEEEEeCCCCCCHHHH-HHHHH---------HHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh
Q 046233 413 LRH-TERCSALVHVIDGSAEQPEFEF-DAVRL---------ELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA 481 (518)
Q Consensus 413 Lr~-IerADvlL~VVDaS~~~s~e~~-~~L~~---------eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~ 481 (518)
++. ...++++++|+|.+ ++... ..|.. .+.... ....|+++|+||+|+.... .+...+....
T Consensus 76 ~~~~~~~~~~v~~v~d~~---s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~--~~~~~~~~~~ 148 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGK---AAPEIIKRWEKRGEIPIDVEFYQFLR--ELDIPTIVAVNKLDKIKNV--QEVINFLAEK 148 (190)
T ss_dssp HHHHGGGCCEEEEEEETT---HHHHHHHHHHHTTCCCHHHHHHHHHH--HTTCCEEEEEECGGGCSCH--HHHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcch---hhhhHHHhhhccCccHHHHHHHHHHH--hcCCceEEEeehHhccCcH--HHHHHHHHHH
Confidence 333 44455666666654 33332 22211 111111 1468999999999998653 2223333333
Q ss_pred cCC-------ceEEEeccCCCCHHHHHHHHHHHHHhhhHh
Q 046233 482 RGI-------EPFCMSAVKREGTHEVISAAYQLLQKNKEA 514 (518)
Q Consensus 482 ~g~-------~i~~ISAktgeGI~eL~~~L~e~L~~~~~~ 514 (518)
.+. ++++|||+++.|+++++++|.+.+...+..
T Consensus 149 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 149 FEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp HTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 343 479999999999999999999988765443
No 130
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=5.6e-19 Score=176.57 Aligned_cols=162 Identities=17% Similarity=0.105 Sum_probs=116.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC-CceEEEEcCCCCccccccCCCcchhhhccc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY-DSTMVVADLPGLLEGAHQGFGLGHEFLRHT 416 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~-~~~l~I~DTPGliegas~~~gLg~~fLr~I 416 (518)
+...+|+++|.+|||||||+++|+.... ...+..|+.......+.++. ...+.+|||||+.... ..+..++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~ 224 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSY 224 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhc
Confidence 4456899999999999999999997654 34455555544444444442 2356699999986532 2233456
Q ss_pred cccCceEEEEeCCCCCCHHHHH-HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc-------------cchHHHHHHHHhc
Q 046233 417 ERCSALVHVIDGSAEQPEFEFD-AVRLELEMFSPEIAEKPYIVAFNKMDLPEAY-------------EKWPSFKEKLQAR 482 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~-~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~-------------e~~eel~~~l~~~ 482 (518)
..+|++|+|+|++++.++..+. .|...+..+. .++|+++|+||+|+.... ...++........
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 301 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 301 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc
Confidence 7799999999999987777665 4556666543 278999999999997531 1123344455555
Q ss_pred CC-ceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 483 GI-EPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 483 g~-~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
++ ++++|||+++.||++++++|.+.+..
T Consensus 302 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 302 GAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 65 89999999999999999999987753
No 131
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=5.4e-19 Score=173.51 Aligned_cols=168 Identities=18% Similarity=0.108 Sum_probs=116.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCc--eeeeceeeEEEecCCceEEEEcCCCCccccccC-CCcchhhhccc-
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPF--TTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG-FGLGHEFLRHT- 416 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypf--TTl~p~lg~v~~~~~~~l~I~DTPGliegas~~-~gLg~~fLr~I- 416 (518)
.+|+|||.+|||||||+|+|++....+..+++ +|..+..+.+... +..++||||||+.+..... ..+...+.+.+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD-KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET-TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC-CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 48999999999999999999998877765554 7777877877776 6799999999997543321 22333333333
Q ss_pred ---cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--ch-----HHHHHHHHhcCCce
Q 046233 417 ---ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KW-----PSFKEKLQARGIEP 486 (518)
Q Consensus 417 ---erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~-----eel~~~l~~~g~~i 486 (518)
..+|++|+|+|++. ....+...+......+.......|+|||+||+|+..... .+ +.+...++..+..+
T Consensus 101 ~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~ 179 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRV 179 (247)
T ss_dssp HHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred hcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeE
Confidence 78999999999985 344444444444445555555789999999999975321 11 23555566667777
Q ss_pred EEEeccC-----CCCHHHHHHHHHHHHHh
Q 046233 487 FCMSAVK-----REGTHEVISAAYQLLQK 510 (518)
Q Consensus 487 ~~ISAkt-----geGI~eL~~~L~e~L~~ 510 (518)
+.+++.. +.|+.+|++.|.+++.+
T Consensus 180 ~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 180 CAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 7777654 58999999999999876
No 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.2e-19 Score=181.00 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=111.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
.+|+|+|.+|||||||+++|++... ...+ .|+......+... ...+.||||||+.... ..+..+++.+|
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~--pT~~~~~~~~~~~-~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 234 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTI--PTIGFNVETVEYK-NISFTVWDVGGQDKIR-------PLWRHYFQNTQ 234 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSSCC-EEEE--EETTEEEEEEEET-TEEEEEEECC-----C-------CSHHHHHTTEE
T ss_pred ceEEEECCCCccHHHHHHHHhCCCC-CCcc--cccceEEEEEecC-cEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 4899999999999999999988653 2222 3555555555554 5789999999975522 22334466799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhc-----CCceEEEeccCCC
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQAR-----GIEPFCMSAVKRE 495 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~-----g~~i~~ISAktge 495 (518)
++|+|+|+++..++.....++..+.. .....++|+|||+||+|+..... .+++...+... ++++++|||+++.
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~-~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHh-hhccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 99999999999888777655544432 11234789999999999986543 34455444332 4579999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 046233 496 GTHEVISAAYQLLQKN 511 (518)
Q Consensus 496 GI~eL~~~L~e~L~~~ 511 (518)
||++||++|.+.+...
T Consensus 313 gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 313 GLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp THHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999987653
No 133
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.78 E-value=1.9e-18 Score=161.67 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=118.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++........+..+.++..+.+.++.. ..+.+|||||+.... .+...+ +..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~~~~---~~~ 77 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYR----RITSAY---YRG 77 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTT----CCCHHH---HTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhh----hhhHHH---Hhc
Confidence 468999999999999999999997665544555556666777777632 467899999975422 133333 345
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
++++++|+|+++..++.....|...+.... ....|+++|+||+|+...... ......++...++.++.+||+++.|+
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNV 155 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 899999999998766666655555554332 246899999999999754332 33445555566788999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++++++|.+.+...
T Consensus 156 ~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 156 EEAFKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 134
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.78 E-value=1.7e-19 Score=166.83 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=102.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEe------cCCceEEEEcCCCCccccccCCCcchhhh
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSF------DYDSTMVVADLPGLLEGAHQGFGLGHEFL 413 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~------~~~~~l~I~DTPGliegas~~~gLg~~fL 413 (518)
.+|+|+|.+|||||||+++|++.... ...+. +|+........+ .....+.+|||||+.+... +...+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----~~~~~- 76 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS-ATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----THPHF- 76 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHHHHT----TSHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcc-eeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----hhHHH-
Confidence 37999999999999999999985322 22222 222222111111 1245899999999865322 22333
Q ss_pred ccccccCceEEEEeCCCC-CCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch---HHHHHHHH-hcCCc---
Q 046233 414 RHTERCSALVHVIDGSAE-QPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW---PSFKEKLQ-ARGIE--- 485 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~-~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~---eel~~~l~-~~g~~--- 485 (518)
+..++++++|+|++++ .++..+..|..++.... .+.|+++|+||+|+....... ....+.+. ..+++
T Consensus 77 --~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
T 2zej_A 77 --MTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIR 151 (184)
T ss_dssp --HHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEE
T ss_pred --ccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchh
Confidence 4458999999999886 35555555555554332 368999999999997653321 12222222 23565
Q ss_pred -eEEEeccCCC-CHHHHHHHHHHHHHhhhH
Q 046233 486 -PFCMSAVKRE-GTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 486 -i~~ISAktge-GI~eL~~~L~e~L~~~~~ 513 (518)
++++||+++. ++++|++.|.+.+...+.
T Consensus 152 ~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 152 DYHFVNATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp EEEECCTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred heEEEecccCchhHHHHHHHHHHHHhcccc
Confidence 8999999997 999999999998876544
No 135
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=4.2e-19 Score=179.54 Aligned_cols=161 Identities=21% Similarity=0.225 Sum_probs=114.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCc-cccc-cCCCcchhhhcccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL-EGAH-QGFGLGHEFLRHTE 417 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGli-egas-~~~gLg~~fLr~Ie 417 (518)
..|+|||.||||||||+|+|++.+..+ +..+.||.....+++... ..++.+|||||+. .... .+..+.......++
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~-~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC-CeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 379999999999999999999987643 567888887777877765 5789999999986 2111 01112233455678
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHH-hcCC-ceEEEeccCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQ-ARGI-EPFCMSAVKRE 495 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~-~~g~-~i~~ISAktge 495 (518)
.+|++++|+|+++ -...+ ..+...+.. ...|+++|+||+|+...........+.+. ..++ .++++||+++.
T Consensus 88 ~~D~vl~Vvd~~~-~~~~~-~~i~~~l~~-----~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 88 DVELVIFVVEGTR-WTPDD-EMVLNKLRE-----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CEEEEEEEEETTC-CCHHH-HHHHHHHHS-----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred cCCEEEEEEeCCC-CCHHH-HHHHHHHHh-----cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 8999999999987 33333 233333431 36899999999999862222223333333 3354 69999999999
Q ss_pred CHHHHHHHHHHHHH
Q 046233 496 GTHEVISAAYQLLQ 509 (518)
Q Consensus 496 GI~eL~~~L~e~L~ 509 (518)
|+++|+++|.+.++
T Consensus 161 ~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 161 NVDTIAAIVRKHLP 174 (301)
T ss_dssp THHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999987654
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=1.4e-19 Score=192.03 Aligned_cols=162 Identities=19% Similarity=0.183 Sum_probs=115.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ier 418 (518)
..+|+|+|.+|||||||+++|++... .+..++++|.++....+.+.....+.||||||+.+....+......++..+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 46899999999999999999998876 35788999999988888887555899999999987544333233345566778
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
||++|+|+|++. ......+..++... ++|+++|+||+|+...... +...+.....+++++++||+++.|++
T Consensus 114 aD~vllVvD~~~---~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 114 ADCGILVTDSAP---TPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp CSEEEEECSSSC---CHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred CCEEEEEEeCCC---hHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 999999999922 23345566666543 6899999999999876543 22222223347899999999999999
Q ss_pred HHHHHHHHHHHh
Q 046233 499 EVISAAYQLLQK 510 (518)
Q Consensus 499 eL~~~L~e~L~~ 510 (518)
+++++|.+.+..
T Consensus 185 eL~~~L~~~l~~ 196 (423)
T 3qq5_A 185 DIGKTISEILPG 196 (423)
T ss_dssp THHHHHHHHSCC
T ss_pred HHHHHHHHhhhh
Confidence 999999998843
No 137
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.77 E-value=4.8e-19 Score=191.99 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=111.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC------CCCCCCceeeeceeeEEEecC---CceEEEEcCCCCccccccCCCcch
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP------TIANYPFTTLLPNLGVVSFDY---DSTMVVADLPGLLEGAHQGFGLGH 410 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~------~Ia~ypfTTl~p~lg~v~~~~---~~~l~I~DTPGliegas~~~gLg~ 410 (518)
..+|+|||.+|||||||+++|++... .++.+.+++..++.+.+.+.. ...+.+|||||+.... .+..
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----~~~~ 116 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----ASHQ 116 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT----TTCH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH----HHHH
Confidence 35899999999999999999998763 334444444444444444432 4689999999975432 2444
Q ss_pred hhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEE
Q 046233 411 EFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCM 489 (518)
Q Consensus 411 ~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~I 489 (518)
.|+++ +|++|+|+|+++. +....|..++..+.+ ++|+|||+||+|+...... .+.+.+.+...++++++|
T Consensus 117 ~~l~~---~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~v 187 (535)
T 3dpu_A 117 FFMTR---SSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRI 187 (535)
T ss_dssp HHHHS---SEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEEC
T ss_pred HHccC---CcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEE
Confidence 55544 9999999999864 456667777776653 6899999999999865443 445666666668899999
Q ss_pred eccCCCCHHHHHHHHHHHHHhh
Q 046233 490 SAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 490 SAktgeGI~eL~~~L~e~L~~~ 511 (518)
||+++.||++|+++|.+.+...
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCT
T ss_pred ecCcccCHHHHHHHHHHHHhcc
Confidence 9999999999999999988654
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=2.9e-19 Score=189.26 Aligned_cols=159 Identities=20% Similarity=0.269 Sum_probs=102.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTER 418 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~Ier 418 (518)
++|+|||.||||||||+|+|++.+.. +.+++++|.+...+.+.+. +..+.||||||+...... ...+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTC-SSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-CceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 58999999999999999999988765 4788999998887777765 578999999998632211 01133344556788
Q ss_pred cCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCC-ceEEEeccCCCCH
Q 046233 419 CSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGI-EPFCMSAVKREGT 497 (518)
Q Consensus 419 ADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~-~i~~ISAktgeGI 497 (518)
||++|+|+|+++..+..+.. +...|. ..++|+++|+||+|+........+ ++ ..++ +++++||++|.|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~-~~~~l~-----~~~~pvilv~NK~D~~~~~~~~~~---~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEE-VAKILY-----RTKKPVVLAVNKLDNTEMRANIYD---FY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHH-HHHHHT-----TCCSCEEEEEECCCC-----CCCS---SG-GGSSCCCEECBTTTTBTH
T ss_pred CCEEEEEEeCCCCCCHHHHH-HHHHHH-----HcCCCEEEEEECccCccchhhHHH---HH-HcCCCCeEEEeCcCCCCh
Confidence 99999999999876655432 334443 146899999999999754322111 11 2344 7899999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
.+|+++|.+.++.
T Consensus 153 ~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 153 GDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHHhcCc
Confidence 9999999988864
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.7e-18 Score=181.92 Aligned_cols=165 Identities=25% Similarity=0.232 Sum_probs=113.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC-C----Ccchhhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG-F----GLGHEFL 413 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~-~----gLg~~fL 413 (518)
..+|+|||.+|||||||+|+|++... .+.++++||.++..+.+.++ +..+.+|||||+....... . -.....+
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-TEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-CEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 35899999999999999999998765 36889999999999988887 5689999999985432211 0 0111224
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHH----h-cCCceE
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQ----A-RGIEPF 487 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~----~-~g~~i~ 487 (518)
.+++.+|++++|+|++...+..+.. +...+.. ..+|+++|+||+|+...... .+++.+.+. . ...+++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~-----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQR-MAGLMER-----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH-----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 5677899999999999876665533 3333332 46899999999999864331 233333332 1 246899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHhh
Q 046233 488 CMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
++||++|.|+++|++.|.+.+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999887654
No 140
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=167.62 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=110.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCC--ceeeeceeeEEEecCCceEEEEcCCCCccccccCCC----cchhhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYP--FTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFG----LGHEFL 413 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~yp--fTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~g----Lg~~fL 413 (518)
..+|+|||.+|||||||+|+|++.......++ ++|..+....+.+. +..+.||||||+.+....... +...+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET-TEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC-CceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999887666666 67777777777776 578999999999765433222 222333
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccch-------HHHHHHHHhcCCce
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKW-------PSFKEKLQARGIEP 486 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~-------eel~~~l~~~g~~i 486 (518)
..+..+|++|+|+|++.... .+...+...+..+... ..+|++||+||+|+....... +.+...++..+..+
T Consensus 108 ~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~ 185 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRY 185 (239)
T ss_dssp HTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC------------CHHHHHHHHHHSSSE
T ss_pred hcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEE
Confidence 34556799999999986444 3344444444333211 236999999999997543221 24555566667778
Q ss_pred EEEeccCC-----CCHHHHHHHHHHHHHh
Q 046233 487 FCMSAVKR-----EGTHEVISAAYQLLQK 510 (518)
Q Consensus 487 ~~ISAktg-----eGI~eL~~~L~e~L~~ 510 (518)
+.+++..+ .++.+|+..|.+++..
T Consensus 186 ~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 186 CALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88877644 6899999999888765
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.76 E-value=1e-18 Score=187.27 Aligned_cols=160 Identities=22% Similarity=0.259 Sum_probs=109.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcc-hhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLG-HEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg-~~fLr~Ie 417 (518)
-.+|+|+|.||||||||+|+|++.... +.++++||.+.....+.++ +..+.||||||+.+....-..++ ...+..+.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~ 302 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-GIPVQVLDTAGIRETSDQVEKIGVERSRQAAN 302 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-TEEEEECC--------------------CCCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-CEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence 357999999999999999999987654 5788999998877777776 57899999999865332211111 23445678
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.+|++|+|+|++++...... .+...+. .+|+++|+||+|+....... .+.+ +. ...++++|||+++.|+
T Consensus 303 ~aD~vl~VvD~s~~~~~~~~-~i~~~l~-------~~piivV~NK~Dl~~~~~~~-~~~~-~~-~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 303 TADLVLLTIDAATGWTTGDQ-EIYEQVK-------HRPLILVMNKIDLVEKQLIT-SLEY-PE-NITQIVHTAAAQKQGI 371 (462)
T ss_dssp SCSEEEEEEETTTCSCHHHH-HHHHHHT-------TSCEEEEEECTTSSCGGGST-TCCC-CT-TCCCEEEEBTTTTBSH
T ss_pred cCCEEEEEeccCCCCCHHHH-HHHHhcc-------CCcEEEEEECCCCCcchhhH-HHHH-hc-cCCcEEEEECCCCCCH
Confidence 89999999999987665542 2333332 37999999999998654321 1100 00 2468999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 046233 498 HEVISAAYQLLQKN 511 (518)
Q Consensus 498 ~eL~~~L~e~L~~~ 511 (518)
++|+++|.+.+...
T Consensus 372 ~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 372 DSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 142
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.75 E-value=1.6e-17 Score=155.08 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=117.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCC-ceEEEEcCCCCccccccCCCcchhhhcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYD-STMVVADLPGLLEGAHQGFGLGHEFLRHTE 417 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~-~~l~I~DTPGliegas~~~gLg~~fLr~Ie 417 (518)
...+|+|||.+|||||||+++|++........+..+.+...+.+.++.. ..+.+|||||+.... .+...+ ++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~~~~---~~ 100 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----AITSAY---YR 100 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----CCCHHH---HT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----hhhHHH---hh
Confidence 4568999999999999999999998765555666666667777777631 356779999975421 232333 45
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEeccCCCC
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSAVKREG 496 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISAktgeG 496 (518)
.++++++|+|+++..++..+..|...+.... ....|+++|+||+|+...... ......++...++.++.+||+++.|
T Consensus 101 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~ 178 (191)
T 1oix_A 101 GAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178 (191)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 5899999999988766655555555554332 246799999999999754332 3344455555678899999999999
Q ss_pred HHHHHHHHHHHH
Q 046233 497 THEVISAAYQLL 508 (518)
Q Consensus 497 I~eL~~~L~e~L 508 (518)
+++++++|.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 143
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=166.96 Aligned_cols=167 Identities=16% Similarity=0.057 Sum_probs=106.4
Q ss_pred eeeeeeCCC---------CCChhHHHHHHhccC--CCCCCCCcee--eeceeeEEE--------------e-cCCceEEE
Q 046233 341 ADVGIVGAP---------NAGKSTLLSVISAAQ--PTIANYPFTT--LLPNLGVVS--------------F-DYDSTMVV 392 (518)
Q Consensus 341 a~V~LVG~p---------NAGKSTLLn~Ls~ak--~~Ia~ypfTT--l~p~lg~v~--------------~-~~~~~l~I 392 (518)
.+|+|||.+ |||||||+++|++.+ .....+..|| .+.....+. + +....+.|
T Consensus 20 ~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i 99 (255)
T 3c5h_A 20 YNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHI 99 (255)
T ss_dssp EEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEE
T ss_pred eEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEE
Confidence 589999999 999999999999842 2233444443 222111111 1 12357889
Q ss_pred Ec------CCCCcccccc--------------------------CCCcchhhhcccc-----ccCceEEEEeCCCC--CC
Q 046233 393 AD------LPGLLEGAHQ--------------------------GFGLGHEFLRHTE-----RCSALVHVIDGSAE--QP 433 (518)
Q Consensus 393 ~D------TPGliegas~--------------------------~~gLg~~fLr~Ie-----rADvlL~VVDaS~~--~s 433 (518)
|| |||....... ..++...|.+++. .||++|+|+|++++ .+
T Consensus 100 ~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s 179 (255)
T 3c5h_A 100 VEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRN 179 (255)
T ss_dssp EEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----C
T ss_pred EEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhh
Confidence 98 5544321110 0112222222222 69999999999998 88
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 434 EFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 434 ~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
+..+..|..++..+. ...+.|++||+||+|+..... +++..+.... .++++++|||+++.||+++|++|.+.+.
T Consensus 180 ~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~~~~-v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 180 FDDQLKFVSNLYNQL-AKTKKPIVVVLTKCDEGVERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCCEEEEEECGGGBCHHH-HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ccCCCCEEEEEEcccccccHH-HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 888777766665331 013689999999999976433 2444444444 3789999999999999999999998764
No 144
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=2.7e-18 Score=167.90 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=109.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCC-Cc-eeeeceeeEEEecCCceEEEEcCCCCccccccCCCc----chhhh
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANY-PF-TTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGL----GHEFL 413 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~y-pf-TTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gL----g~~fL 413 (518)
..+|+|+|.+|||||||+++|++....+..+ +. +|.....+.+.+. +..+.||||||+.+.......+ ...+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~ 100 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-NREIVIIDTPDMFSWKDHCEALYKEVQRCYL 100 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-TEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-CCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999877544333 33 5666666777765 5789999999987644321111 12223
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEe-CCCCCCcccchHH---------HHHHHHhcC
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN-KMDLPEAYEKWPS---------FKEKLQARG 483 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN-KiDL~~~~e~~ee---------l~~~l~~~g 483 (518)
..+..+|++|+|+|++.. .. ....+..++..+.......|.++|+| |+|+... . ... +...+...+
T Consensus 101 ~~~~~~d~il~V~d~~~~-~~-~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~-~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 101 LSAPGPHVLLLVTQLGRY-TS-QDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-S-LMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHTTCCSEEEEEEETTCC-CH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-C-HHHHHHHCCCHHHHHHHHHTT
T ss_pred hcCCCCcEEEEEEeCCCC-CH-HHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-c-HHHHHHhcchHHHHHHHHHhC
Confidence 356779999999999862 22 22233344443211112467777777 9999743 2 222 222333332
Q ss_pred -----CceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 484 -----IEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 484 -----~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+..+++||+++.|+++||++|.+.+..
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 222789999999999999999998875
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.74 E-value=8.9e-18 Score=180.67 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=110.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC-------CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhh
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ-------PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFL 413 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak-------~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fL 413 (518)
.+|+++|.+++|||||+++|++.. ......+++|++.....+.++ +..+.||||||+.+ +...+.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~i~iiDtPGh~~-------~~~~~~ 91 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE-NYRITLVDAPGHAD-------LIRAVV 91 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET-TEEEEECCCSSHHH-------HHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC-CEEEEEEECCChHH-------HHHHHH
Confidence 589999999999999999999865 122345567777766666665 57899999999754 445567
Q ss_pred ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---chHHHHHHHHhc----CCce
Q 046233 414 RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE---KWPSFKEKLQAR----GIEP 486 (518)
Q Consensus 414 r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---~~eel~~~l~~~----g~~i 486 (518)
..+..||++|+|+|+++....+..+.+. .+.. .+.|+++|+||+|+..... ..+++.+.+... .+++
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~-----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHML-ILDH-----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH-----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHHH-HHHH-----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 7788899999999999865545544443 3332 3578899999999986421 223444555444 5789
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHh
Q 046233 487 FCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 487 ~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+++||++|.||++|+++|.+.++.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhcC
Confidence 999999999999999999998763
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=7e-19 Score=191.72 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=118.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.++|+++|.+|+|||||+++|++........+++|.+.....+.++.+..++||||||+.. +...+.+.+..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~-------f~~~~~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAA-------FSAMRARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCC-------TTTSBBSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHH-------HHHHHHHHHccC
Confidence 4689999999999999999999877666677788887777666665567899999999765 333455667789
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHHH---HHhc--CCceEEEecc
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKEK---LQAR--GIEPFCMSAV 492 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~~---l~~~--g~~i~~ISAk 492 (518)
|++|+|+|+++....+..+.+..... .+.|++||+||+|+.... .....+... +... .++++++||+
T Consensus 77 D~vILVVDa~dg~~~qt~e~l~~~~~------~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 77 DIVILVVAADDGVMKQTVESIQHAKD------AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSCEEECBSSSCCCHHHHHHHHHHHT------TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHH------cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 99999999999777666665543322 468999999999997532 112222211 0111 2478999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 046233 493 KREGTHEVISAAYQLLQK 510 (518)
Q Consensus 493 tgeGI~eL~~~L~e~L~~ 510 (518)
+|.|+++|+++|..+++.
T Consensus 151 tG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 151 TGENMMALAEATIALAEM 168 (537)
T ss_dssp SSCSSHHHHHHHHHHHTT
T ss_pred CCCCchhHHHHHHHhhhc
Confidence 999999999999988764
No 147
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.73 E-value=6.9e-18 Score=167.53 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=93.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCC------ceeeeceeeEEEecCC---ceEEEEcCCCCccccccCCC---c
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYP------FTTLLPNLGVVSFDYD---STMVVADLPGLLEGAHQGFG---L 408 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~yp------fTTl~p~lg~v~~~~~---~~l~I~DTPGliegas~~~g---L 408 (518)
.+|+|||.+|||||||+|+|++.......++ .+|+........+... ..++||||||+.+....... +
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 5899999999999999999998776665553 4455444444444322 38999999998543221111 1
Q ss_pred c-------hhhhcc----------ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc
Q 046233 409 G-------HEFLRH----------TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK 471 (518)
Q Consensus 409 g-------~~fLr~----------IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~ 471 (518)
. ..+++. -.++|+++|+++.+.......-..+..++. ..+|+|+|+||+|+....+.
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~------~~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH------EKVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT------TTSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh------ccCCEEEEEeccCCCCHHHH
Confidence 1 111211 124789999998776332222223344443 16899999999999764332
Q ss_pred ---hHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 472 ---WPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 472 ---~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
...+.+.+...+++++++||++++|+++++++|.+.++
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 23455566667889999999999999999999987654
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=2.6e-17 Score=172.77 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=103.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC---CCCCCceeeeceeeEEEe---------------c--C-----CceEEEEc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT---IANYPFTTLLPNLGVVSF---------------D--Y-----DSTMVVAD 394 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~ypfTTl~p~lg~v~~---------------~--~-----~~~l~I~D 394 (518)
..+|+++|.+++|||||+++|++.... ....+..|+........+ + . ...+.|||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 458999999999999999999965321 122234455443322221 0 0 15799999
Q ss_pred CCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---
Q 046233 395 LPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--- 470 (518)
Q Consensus 395 TPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--- 470 (518)
|||+.+ +...+++.+..+|++|+|+|+++.. ..+..+.+. .+..+ ..+|+++|+||+|+.....
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~l----~~~~iivv~NK~Dl~~~~~~~~ 155 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-ALEIL----GIDKIIIVQNKIDLVDEKQAEE 155 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHT----TCCCEEEEEECTTSSCTTTTTT
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HHHHc----CCCeEEEEEEccCCCCHHHHHH
Confidence 999754 4456777788899999999999764 334444443 23322 2368999999999986542
Q ss_pred chHHHHHHHHh---cCCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 471 KWPSFKEKLQA---RGIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 471 ~~eel~~~l~~---~g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
..+++.+.+.. ..++++++||+++.||++|+++|.+.++.
T Consensus 156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 34555565554 26789999999999999999999987764
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.72 E-value=9.8e-18 Score=175.77 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=109.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeec--------------eeeEEEec----CCceEEEEcCCCCccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLP--------------NLGVVSFD----YDSTMVVADLPGLLEG 401 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p--------------~lg~v~~~----~~~~l~I~DTPGlieg 401 (518)
.+|+++|.+|+|||||+++|++.... ...+..+|... ......+. ....+.||||||+.+
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~- 87 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV- 87 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG-
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH-
Confidence 58999999999999999999985321 11222222210 00000000 015799999999754
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEK 478 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~ 478 (518)
+...+...+..+|++|+|+|+++..+..+...+...+..+ ..+|+++|+||+|+....+. .+++.+.
T Consensus 88 ------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~----~~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 88 ------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII----GVKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp ------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH----TCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc----CCCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 4556777788999999999999876555555454555433 23699999999999865432 2333333
Q ss_pred HHhc---CCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 479 LQAR---GIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 479 l~~~---g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+... .++++++||+++.||++|+++|.+.++..
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 3322 56899999999999999999999877543
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.72 E-value=2.4e-17 Score=173.02 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=111.5
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCC---CCCCCceeeeceeeEEEec-----------------C-----CceEEEE
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPT---IANYPFTTLLPNLGVVSFD-----------------Y-----DSTMVVA 393 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~ypfTTl~p~lg~v~~~-----------------~-----~~~l~I~ 393 (518)
...+|+++|.+++|||||+++|++.... ....+..|+........+. . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4568999999999999999999964321 1222444554433322220 0 1579999
Q ss_pred cCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--
Q 046233 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-- 470 (518)
Q Consensus 394 DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-- 470 (518)
||||+.+ +...+++.+..+|++|+|+|+++.. ..+..+.+. .+..+ ..+|+++|+||+|+.....
T Consensus 89 DtPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~~----~~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 89 DAPGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQII----GQKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp ECSSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHHHH----TCCCEEEEEECGGGSCHHHHH
T ss_pred ECCChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc----CCCcEEEEEECccCCCHHHHH
Confidence 9999754 4456777788899999999999764 334444443 23322 2368999999999987542
Q ss_pred -chHHHHHHHHh---cCCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 471 -KWPSFKEKLQA---RGIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 471 -~~eel~~~l~~---~g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
..+++.+++.. ..++++++||+++.||++|+++|.+.++.
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 23445555543 36799999999999999999999987764
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.71 E-value=3.9e-17 Score=173.63 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=102.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEecCC
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFDYD 387 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~~~ 387 (518)
...+|+++|.+|+|||||+++|+.....+ ...+++|++.....+... +
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~-~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE-K 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-C
Confidence 34689999999999999999996542211 112456777666666665 5
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCC-------HHHHHHHHHHHHhcCCCCCCCC-EEEE
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQP-------EFEFDAVRLELEMFSPEIAEKP-YIVA 459 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s-------~e~~~~L~~eL~~~~~~l~~kP-iIVV 459 (518)
..+.||||||+.+ +...+...+..||++|+|||+++... .+..+.+.. +.. ...| +|+|
T Consensus 95 ~~~~iiDTPGh~~-------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~-~~~-----~~v~~iIvv 161 (439)
T 3j2k_7 95 KHFTILDAPGHKS-------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAML-AKT-----AGVKHLIVL 161 (439)
T ss_pred eEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHH-HHH-----cCCCeEEEE
Confidence 6899999999865 44556677888999999999988543 123333322 221 3456 8999
Q ss_pred EeCCCCCCcc---cc----hHHHHHHHHhc------CCceEEEeccCCCCHHHHHH
Q 046233 460 FNKMDLPEAY---EK----WPSFKEKLQAR------GIEPFCMSAVKREGTHEVIS 502 (518)
Q Consensus 460 lNKiDL~~~~---e~----~eel~~~l~~~------g~~i~~ISAktgeGI~eL~~ 502 (518)
+||+|+.... +. .+++..+++.. .++++++||++|.|+.++.+
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999996421 11 22333344333 35799999999999999665
No 152
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.71 E-value=2.3e-17 Score=179.49 Aligned_cols=119 Identities=17% Similarity=0.233 Sum_probs=88.3
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCCC----------------CC------CCCceeeeceeeEEEecCCceEEEE
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQPT----------------IA------NYPFTTLLPNLGVVSFDYDSTMVVA 393 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~----------------Ia------~ypfTTl~p~lg~v~~~~~~~l~I~ 393 (518)
+++.+.+|+|+|.+|||||||+++|+..... +. ..+++|+......+.+. +..+.||
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~i~li 87 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK-DYLINLL 87 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET-TEEEEEE
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC-CEEEEEE
Confidence 4556789999999999999999999632111 11 12345666666666665 5789999
Q ss_pred cCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 394 DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
||||+.+ +...+.+++..+|++|+|+|+++.........|. .+.. .++|+++|+||+|+...
T Consensus 88 DTPG~~d-------f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~-----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 88 DTPGHAD-------FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL-----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT-----TTCCEEEEEECTTSCCS
T ss_pred ECCCchh-------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH-----cCCCEEEEEeCCCCccc
Confidence 9999866 4445777888899999999999977766665443 3332 36899999999999753
No 153
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.71 E-value=5.7e-18 Score=180.30 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=101.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC-CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc-CCCcchhhhcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT-IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ-GFGLGHEFLRHTE 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~-Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~-~~gLg~~fLr~Ie 417 (518)
.++|+|||.+|||||||+|+|++.+.. +.+++++|.+...+.+.+. +..+.||||||+...... ...+...+..+++
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTC-SSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-CceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 468999999999999999999987764 5788999998887777665 578999999997632211 1112233445577
Q ss_pred ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 418 RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 418 rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
.||++|+|+|+.......+. .+..+|.. .++|+++|+||+|+...... ..+.+......++++||+++.|+
T Consensus 102 ~ad~il~VvD~~~~~~~~d~-~l~~~l~~-----~~~pvilV~NK~D~~~~~~~---~~e~~~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAADE-EVAKILYR-----TKKPVVLAVNKLDNTEMRAN---IYDFYSLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HCSEEEEEEESSSCSCHHHH-HHHHHHTT-----CCSCEEEEEECC------------CCSGGGSSSSEEECCTTTCTTH
T ss_pred hCCEEEEEEeCCCCCChHHH-HHHHHHHH-----cCCCEEEEEECccchhhhhh---HHHHHHcCCCceEEeecccccch
Confidence 89999999999876554443 23444442 47899999999998754221 11112211236789999999999
Q ss_pred HHHHHHHHHHHHh
Q 046233 498 HEVISAAYQLLQK 510 (518)
Q Consensus 498 ~eL~~~L~e~L~~ 510 (518)
.+|++++.+.+..
T Consensus 173 ~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 173 GDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHTTGGG
T ss_pred HHHHHHHHhhccc
Confidence 9999999887754
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.70 E-value=8e-17 Score=177.63 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=111.2
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCC---------C------CCceeeeceeeEEEec--C--CceEEEEcCCCC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIA---------N------YPFTTLLPNLGVVSFD--Y--DSTMVVADLPGL 398 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia---------~------ypfTTl~p~lg~v~~~--~--~~~l~I~DTPGl 398 (518)
+.+.+|+++|.+++|||||+++|+.....+. + ....|+......+.+. + ...+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4567999999999999999999976422111 0 1233444433344443 1 257889999999
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHH
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEK 478 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~ 478 (518)
.+ +...+.+.+..||++|+|+|+++....++...|...+. .+.|+|+|+||+|+.... .+...+.
T Consensus 84 ~d-------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~a~--~~~v~~e 148 (600)
T 2ywe_A 84 VD-------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPSAD--VDRVKKQ 148 (600)
T ss_dssp GG-------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHHHH
T ss_pred Hh-------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccccC--HHHHHHH
Confidence 76 34456677888999999999999877777776665544 468999999999998653 2333334
Q ss_pred HHh-cCC---ceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 479 LQA-RGI---EPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 479 l~~-~g~---~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+.. .++ +++++||++|.||++|+++|.+.++..
T Consensus 149 l~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 149 IEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 433 244 589999999999999999999988653
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.70 E-value=3.7e-17 Score=175.47 Aligned_cols=151 Identities=18% Similarity=0.135 Sum_probs=99.7
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEec
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFD 385 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~ 385 (518)
.+...+|+++|.+|+|||||+++|+.....+ ...+++|++.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 3556799999999999999999997652111 122355666555555554
Q ss_pred CCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCH------HHHHHHHHHHHhcCCCCCCCCEEEE
Q 046233 386 YDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE------FEFDAVRLELEMFSPEIAEKPYIVA 459 (518)
Q Consensus 386 ~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~------e~~~~L~~eL~~~~~~l~~kPiIVV 459 (518)
...+.||||||+.+ +...+...+..||++|+|||+++.... .........+.. +..+|+|||
T Consensus 110 -~~~~~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~----~~~~~iIvv 177 (483)
T 3p26_A 110 -RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS----LGIHNLIIA 177 (483)
T ss_dssp -SCEEEEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH----TTCCCEEEE
T ss_pred -CceEEEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH----cCCCcEEEE
Confidence 57899999999865 455677778899999999999986432 122222222222 123679999
Q ss_pred EeCCCCCCcc-cchHHH----HHHHHhc-----CCceEEEeccCCCCHHH
Q 046233 460 FNKMDLPEAY-EKWPSF----KEKLQAR-----GIEPFCMSAVKREGTHE 499 (518)
Q Consensus 460 lNKiDL~~~~-e~~eel----~~~l~~~-----g~~i~~ISAktgeGI~e 499 (518)
+||+|+.... ...+++ ...+... .++++++||++|.||++
T Consensus 178 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 178 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 9999998632 222333 3333322 35789999999999985
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.69 E-value=8e-17 Score=177.65 Aligned_cols=158 Identities=19% Similarity=0.245 Sum_probs=106.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCC---------C------CCceeeeceeeEEEecC----CceEEEEcCCCCc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIA---------N------YPFTTLLPNLGVVSFDY----DSTMVVADLPGLL 399 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia---------~------ypfTTl~p~lg~v~~~~----~~~l~I~DTPGli 399 (518)
.+.+|+++|.+++|||||+++|+.....+. + ....|+......+.+.. ...+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 467999999999999999999986432221 1 12344444444444431 2578999999986
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHH
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKL 479 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l 479 (518)
+ +...+.+.+..||++|+|+|+++....++...|...+. .+.|+|+|+||+|+.... .+...+.+
T Consensus 83 d-------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~a~--~~~v~~ei 147 (599)
T 3cb4_D 83 D-------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPAAD--PERVAEEI 147 (599)
T ss_dssp G-------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTTCC--HHHHHHHH
T ss_pred H-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccccc--HHHHHHHH
Confidence 6 34456677888999999999999877777776665554 468999999999998643 22222233
Q ss_pred H-hcCC---ceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 480 Q-ARGI---EPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 480 ~-~~g~---~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
. ..++ +++++||+++.|+++|+++|.+.++..
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 2 2243 599999999999999999999987653
No 157
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.68 E-value=7e-17 Score=169.95 Aligned_cols=94 Identities=37% Similarity=0.684 Sum_probs=60.5
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecC----------------CceEEEEcCCCCcc
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDY----------------DSTMVVADLPGLLE 400 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~----------------~~~l~I~DTPGlie 400 (518)
++.-.+|+|||.||||||||+|+|++....++++||+|+.|+.+.+.+++ ...+.+|||||+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 34445899999999999999999999888889999999999999988753 12599999999999
Q ss_pred ccccCCCcchhhhccccccCceEEEEeCCC
Q 046233 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSA 430 (518)
Q Consensus 401 gas~~~gLg~~fLr~IerADvlL~VVDaS~ 430 (518)
+++.+.+++..|+.+++.||++++|+|+++
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 999888999999999999999999999975
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.68 E-value=6.1e-17 Score=169.73 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=106.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC------CCCC-----------CCceeeeceeeEEEecCCceEEEEcCCCCcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP------TIAN-----------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA 402 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~------~Ia~-----------ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega 402 (518)
..+|+++|.+|+|||||+++|++... .... ....|+......+... ...+.||||||+.+
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA-KRHYSHVDCPGHAD-- 87 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECS-SCEEEEEECCCSGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccC-CeEEEEEECCChHH--
Confidence 46899999999999999999987310 0000 1233444332223322 47899999999865
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccch----HHHHH
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKW----PSFKE 477 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~----eel~~ 477 (518)
+...+.+.+..+|++|+|+|+++....+..+.+ ..+.. .+.| +++|+||+|+....+.. +++.+
T Consensus 88 -----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l-~~~~~-----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 88 -----YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ-----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp -----GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH-----cCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 344566778889999999999987655444333 33432 3567 88999999998532222 23444
Q ss_pred HHHhcC-----CceEEEeccCCCC------------------HHHHHHHHHHHHH
Q 046233 478 KLQARG-----IEPFCMSAVKREG------------------THEVISAAYQLLQ 509 (518)
Q Consensus 478 ~l~~~g-----~~i~~ISAktgeG------------------I~eL~~~L~e~L~ 509 (518)
.+...+ ++++++||+++.| +.+|+++|.++++
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 555443 6899999999987 7788888877665
No 159
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.68 E-value=2.2e-17 Score=163.67 Aligned_cols=164 Identities=19% Similarity=0.260 Sum_probs=100.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC------CCCCCc----------------------eeeece-------------
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT------IANYPF----------------------TTLLPN------------- 378 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~------Ia~ypf----------------------TTl~p~------------- 378 (518)
.++|+|||.+|||||||+|+|++.... +...|. +|.+..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 469999999999999999999987642 233343 332210
Q ss_pred --ee--------EEEecCCceEEEEcCCCCccccc----cC--CCcchhhhccccccCceE-EEEeCCCCCCHHHHHHHH
Q 046233 379 --LG--------VVSFDYDSTMVVADLPGLLEGAH----QG--FGLGHEFLRHTERCSALV-HVIDGSAEQPEFEFDAVR 441 (518)
Q Consensus 379 --lg--------~v~~~~~~~l~I~DTPGliegas----~~--~gLg~~fLr~IerADvlL-~VVDaS~~~s~e~~~~L~ 441 (518)
.+ .+.......++||||||+..... .. ..+...+..++..++.+| +|+|++......+...+.
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 00 01111136899999999875321 10 012233445566777665 799998754433332233
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHH-HHHHHhc--C-CceEEEeccCCCCHHHHHHHHHHHH
Q 046233 442 LELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSF-KEKLQAR--G-IEPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 442 ~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel-~~~l~~~--g-~~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
.++. + ..+|+++|+||+|+.......... ...+... + .+++++||+++.|+++|+++|.+..
T Consensus 186 ~~~~---~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 186 KEVD---P--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHC---T--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHhC---C--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3332 2 468999999999998654322222 1111111 2 3678899999999999999987643
No 160
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=1.2e-16 Score=169.20 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=100.3
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC-----------CCCCc----------------------eeeeceeeEEEe
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI-----------ANYPF----------------------TTLLPNLGVVSF 384 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-----------a~ypf----------------------TTl~p~lg~v~~ 384 (518)
+...+|+++|.+|+|||||+++|+.....+ +.++. .|++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 445699999999999999999998764211 11122 233322223333
Q ss_pred cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 385 DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 385 ~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
. ...+.||||||+.+ +...+.+.+..||++|+|+|+++....+..+.+ ..+... ..+|+|+|+||+|
T Consensus 102 ~-~~~~~iiDtpGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l-~~~~~~----~~~~iIvviNK~D 168 (434)
T 1zun_B 102 A-KRKFIIADTPGHEQ-------YTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASLL----GIKHIVVAINKMD 168 (434)
T ss_dssp S-SEEEEEEECCCSGG-------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHHT----TCCEEEEEEECTT
T ss_pred C-CceEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHHc----CCCeEEEEEEcCc
Confidence 3 46899999999865 344566678889999999999987654444333 233322 2246999999999
Q ss_pred CCCcc-cc----hHHHHHHHHhcC-----CceEEEeccCCCCHHHHH
Q 046233 465 LPEAY-EK----WPSFKEKLQARG-----IEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 465 L~~~~-e~----~eel~~~l~~~g-----~~i~~ISAktgeGI~eL~ 501 (518)
+.... +. .+++.++++..+ ++++++||++|.|+++++
T Consensus 169 l~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 169 LNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 98632 21 233444455555 689999999999999843
No 161
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.67 E-value=4.6e-16 Score=171.49 Aligned_cols=157 Identities=22% Similarity=0.230 Sum_probs=102.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEec----------C-------CceEEEEcCCCCccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFD----------Y-------DSTMVVADLPGLLEGAH 403 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~----------~-------~~~l~I~DTPGliegas 403 (518)
++|+++|.+|+|||||+++|++...........|.+.....+.+. . ...++||||||+.+...
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~ 85 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHH
Confidence 589999999999999999998764321111122222111111111 0 12599999999866432
Q ss_pred cCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc------------
Q 046233 404 QGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK------------ 471 (518)
Q Consensus 404 ~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~------------ 471 (518)
...+.+..||++|+|+|+++....+++..|.. +.. .+.|+++|+||+|+......
T Consensus 86 -------~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-l~~-----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 86 -------LRKRGGALADLAILIVDINEGFKPQTQEALNI-LRM-----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp -------SBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-HHH-----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred -------HHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-HHH-----cCCeEEEEecccccccccccccCCchHHHHHH
Confidence 23455677999999999998655555555543 332 46899999999999742110
Q ss_pred ------------hHHHHHHHHhcC---------------CceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 472 ------------WPSFKEKLQARG---------------IEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 472 ------------~eel~~~l~~~g---------------~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+.++.+.+...+ ++++++||++|.|+++|+++|..+++.
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 011222332222 379999999999999999999988764
No 162
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.66 E-value=7.1e-17 Score=166.17 Aligned_cols=161 Identities=21% Similarity=0.136 Sum_probs=103.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCC-CCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCS 420 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerAD 420 (518)
||+++|..|||||||++++.+..... .....+|+......+ +....+.||||||+.+.... .+ ....+++.|+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~--~l--~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP--SY--DSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCC--SH--HHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccch--hh--hhhhhccCCC
Confidence 58899999999999999987643211 111223443333332 33478999999999774210 01 1123456799
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc-------chHHHHHHHHh-----cCCceEE
Q 046233 421 ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE-------KWPSFKEKLQA-----RGIEPFC 488 (518)
Q Consensus 421 vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e-------~~eel~~~l~~-----~g~~i~~ 488 (518)
++|+|+|+++. ....+..|..++........+.|+++|+||+||..... ...+..+.+.. .++.+++
T Consensus 75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 99999999987 44555555444432211124689999999999986432 11222223333 3578999
Q ss_pred EeccCCCCHHHHHHHHHHHHHh
Q 046233 489 MSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 489 ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+||++ .+|.+.|..|.+.+..
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSST
T ss_pred eccCC-CcHHHHHHHHHHHHHh
Confidence 99998 5899999998876543
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.66 E-value=2.5e-16 Score=164.19 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=105.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhccccccCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSA 421 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADv 421 (518)
+|+++|.+|+|||||+++|+ ...+|++.....+.+. +..+.||||||+.+ +.....+.+..+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~-~~~i~iiDtPGh~~-------f~~~~~~~~~~aD~ 86 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKE-GRNMVFVDAHSYPK-------TLKSLITALNISDI 86 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSS-SSEEEEEECTTTTT-------CHHHHHHHHHTCSE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecC-CeEEEEEECCChHH-------HHHHHHHHHHHCCE
Confidence 89999999999999999999 2345665555445444 46899999999865 44456667788999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCE-EEEEe-CCCCCCccc---chHHHHHHHHhc---CCceEE--Eec
Q 046233 422 LVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPY-IVAFN-KMDLPEAYE---KWPSFKEKLQAR---GIEPFC--MSA 491 (518)
Q Consensus 422 lL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPi-IVVlN-KiDL~~~~e---~~eel~~~l~~~---g~~i~~--ISA 491 (518)
+|+|+| +.. ...+...+...+.. .+.|. |+|+| |+|+ .... ..+++.+.++.. .+++++ +||
T Consensus 87 ailVvd-~~g-~~~qt~e~~~~~~~-----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA 158 (370)
T 2elf_A 87 AVLCIP-PQG-LDAHTGECIIALDL-----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNK 158 (370)
T ss_dssp EEEEEC-TTC-CCHHHHHHHHHHHH-----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCT
T ss_pred EEEEEc-CCC-CcHHHHHHHHHHHH-----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 999999 543 33333334344442 35677 99999 9999 5322 113344444433 368999 999
Q ss_pred cC---CCCHHHHHHHHHHHHHhh
Q 046233 492 VK---REGTHEVISAAYQLLQKN 511 (518)
Q Consensus 492 kt---geGI~eL~~~L~e~L~~~ 511 (518)
++ +.|+++|++.|.+.++..
T Consensus 159 ~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 159 SAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TSSSTTTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCCCHHHHHHHHHhhcccc
Confidence 99 999999999999988754
No 164
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.66 E-value=2.6e-16 Score=157.56 Aligned_cols=167 Identities=15% Similarity=0.197 Sum_probs=99.5
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCC------CCCC---ceeeece--------------------------------
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTI------ANYP---FTTLLPN-------------------------------- 378 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------a~yp---fTTl~p~-------------------------------- 378 (518)
+++|+|+|.+|||||||+|+|++..... ...| .++..+.
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 4689999999999999999999876411 2223 1222110
Q ss_pred ------e----e------E--EEecCCceEEEEcCCCCcccccc------CCCcchhhhccccccCceEEEEeCCCCCCH
Q 046233 379 ------L----G------V--VSFDYDSTMVVADLPGLLEGAHQ------GFGLGHEFLRHTERCSALVHVIDGSAEQPE 434 (518)
Q Consensus 379 ------l----g------~--v~~~~~~~l~I~DTPGliegas~------~~gLg~~fLr~IerADvlL~VVDaS~~~s~ 434 (518)
. + . +.......++||||||+...... ...+...+..++..+|++|+|+|+++....
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 0 0 0 11222458999999998752211 111334455677889999999998543321
Q ss_pred -HHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc-hHHHHHHHHhcCCceEEEec---cC---CCCHHHHHHHHHH
Q 046233 435 -FEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK-WPSFKEKLQARGIEPFCMSA---VK---REGTHEVISAAYQ 506 (518)
Q Consensus 435 -e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~-~eel~~~l~~~g~~i~~ISA---kt---geGI~eL~~~L~e 506 (518)
.+...+..++. . ..+|+++|+||+|+...... .+.+...+......++++|+ .+ +.|+.++++.+.+
T Consensus 184 ~~~~~~i~~~~~---~--~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 184 NSDALQLAKEVD---P--EGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp TCSHHHHHHHHC---S--SCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHhC---C--CCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 22223334443 1 46899999999999865442 22222111111245566554 45 7899999999998
Q ss_pred HHHhh
Q 046233 507 LLQKN 511 (518)
Q Consensus 507 ~L~~~ 511 (518)
+++..
T Consensus 259 ~~~~~ 263 (315)
T 1jwy_B 259 YFKNH 263 (315)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 88753
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.66 E-value=2.5e-16 Score=164.93 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=108.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC----------------CCCCceeeeceeeEEEecCCceEEEEcCCCCcccccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI----------------ANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQ 404 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~ 404 (518)
.+|+++|.+++|||||+++|++..... ......|+......+... ...+.||||||+.+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~~~iiDtpG~~~---- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-ARHYAHTDCPGHAD---- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-SCEEEEEECSSHHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-CeEEEEEECCChHH----
Confidence 489999999999999999998741100 012334554432223222 47899999999865
Q ss_pred CCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccch----HHHHHHH
Q 046233 405 GFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKW----PSFKEKL 479 (518)
Q Consensus 405 ~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~----eel~~~l 479 (518)
+...+.+.+..+|++|+|+|+++....+..+.+ ..+.. .+.| +++|+||+|+....+.. +++.+.+
T Consensus 79 ---f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 79 ---YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp ---HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 334456677889999999999987665555554 33332 3577 68999999998532222 3444555
Q ss_pred HhcC-----CceEEEeccCCCC----------HHHHHHHHHHHHHh
Q 046233 480 QARG-----IEPFCMSAVKREG----------THEVISAAYQLLQK 510 (518)
Q Consensus 480 ~~~g-----~~i~~ISAktgeG----------I~eL~~~L~e~L~~ 510 (518)
+..+ ++++++||+++.| +.+|++.|.++++.
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5544 5899999999775 89999999887764
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.66 E-value=2.8e-17 Score=177.82 Aligned_cols=154 Identities=21% Similarity=0.200 Sum_probs=105.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERC 419 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerA 419 (518)
.++|+++|.+++|||||+++|++........+++|.+.....+.++ +..++||||||+... ...+.+.+..|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~-~~~i~~iDTPGhe~f-------~~~~~~~~~~a 75 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE-NGMITFLDTPGHAAF-------TSMRARGAQAT 75 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT-SSCCCEECCCTTTCC-------TTSBCSSSBSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC-CEEEEEEECCCcHHH-------HHHHHHHHhhC
Confidence 3589999999999999999998765444444556655444444444 468999999998653 23355667889
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc--cchHHHHH--HH-Hhc--CCceEEEecc
Q 046233 420 SALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY--EKWPSFKE--KL-QAR--GIEPFCMSAV 492 (518)
Q Consensus 420 DvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~--e~~eel~~--~l-~~~--g~~i~~ISAk 492 (518)
|++|+|+|+++....+..+.+.. +.. .+.|+++|+||+|+.... .....+.+ .+ ... .++++++||+
T Consensus 76 D~aILVVda~~g~~~qT~e~l~~-~~~-----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 76 DIVVLVVAADDGVMPQTIEAIQH-AKA-----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSEEEEEETTTBSCTTTHHHHHH-HHH-----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred CEEEEEeecccCccHHHHHHHHH-HHh-----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 99999999988544344444432 221 468999999999997532 11111100 00 111 2689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 046233 493 KREGTHEVISAAYQL 507 (518)
Q Consensus 493 tgeGI~eL~~~L~e~ 507 (518)
+|.|+++|+++|...
T Consensus 150 tG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 150 AGTGIDELLDAILLQ 164 (501)
T ss_dssp TCTTCTTHHHHTTTT
T ss_pred eccCcchhhhhhhhh
Confidence 999999999998753
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.6e-16 Score=175.61 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=104.0
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCC-------------------------------CCceeeeceeeEEEecC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIAN-------------------------------YPFTTLLPNLGVVSFDY 386 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~-------------------------------ypfTTl~p~lg~v~~~~ 386 (518)
+...+|++||.+|||||||+++|+.....+.. .+++|++.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 44569999999999999999999976443322 1466777777767665
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-------CHHHHHHHHHHHHhcCCCCCCCCEEEE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-------PEFEFDAVRLELEMFSPEIAEKPYIVA 459 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-------s~e~~~~L~~eL~~~~~~l~~kPiIVV 459 (518)
...++||||||+.+ +...++..+..||++|+|||+++.. ..+....+ ..+.. +..+|+|||
T Consensus 244 ~~~~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~----lgi~~iIVV 311 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASS----LGIHNLIIA 311 (611)
T ss_dssp SCEEEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHT----TTCCEEEEE
T ss_pred CceEEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHH----cCCCeEEEE
Confidence 57999999999865 4556777888999999999998631 11222222 22221 123569999
Q ss_pred EeCCCCCCcc-cch----HHHHHHHHhc-----CCceEEEeccCCCCHHHH
Q 046233 460 FNKMDLPEAY-EKW----PSFKEKLQAR-----GIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 460 lNKiDL~~~~-e~~----eel~~~l~~~-----g~~i~~ISAktgeGI~eL 500 (518)
+||+|+.... ... ..+...+... .+++++|||++|.||.++
T Consensus 312 vNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 312 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9999998632 122 2333333333 358999999999999876
No 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=1e-16 Score=151.18 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=84.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcc-ccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRH-TER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~-Ier 418 (518)
..+|+|+|.+|||||||+++|++...... .++..++.+.. + ....+.+|||||+..... +...+++. +..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~~-~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~~ 82 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAAD-Y-DGSGVTLVDFPGHVKLRY----KLSDYLKTRAKF 82 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETT-G-GGSSCEEEECCCCGGGTH----HHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEEE-e-eCceEEEEECCCcHHHHH----HHHHHHHhcccc
Confidence 45899999999999999999998764321 01111111110 1 245799999999865322 22333322 334
Q ss_pred cCceEEEEeCC-CCCCHHHHHHHHHHHHhcCC--CCCCCCEEEEEeCCCCCCcccch-------HHHHHHHHhcCCceEE
Q 046233 419 CSALVHVIDGS-AEQPEFEFDAVRLELEMFSP--EIAEKPYIVAFNKMDLPEAYEKW-------PSFKEKLQARGIEPFC 488 (518)
Q Consensus 419 ADvlL~VVDaS-~~~s~e~~~~L~~eL~~~~~--~l~~kPiIVVlNKiDL~~~~e~~-------eel~~~l~~~g~~i~~ 488 (518)
+|++|+|+|++ +..++.....+...+..... .....|+++|+||+|+....... +++.......++++++
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE 162 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 89999999999 66676655544444322100 12468999999999998654321 1122222222456777
Q ss_pred EeccCCCC
Q 046233 489 MSAVKREG 496 (518)
Q Consensus 489 ISAktgeG 496 (518)
+||+++.+
T Consensus 163 ~Sa~~~~~ 170 (218)
T 1nrj_B 163 VERKINEE 170 (218)
T ss_dssp --------
T ss_pred cccccccc
Confidence 77776653
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.63 E-value=6.2e-17 Score=178.30 Aligned_cols=158 Identities=21% Similarity=0.182 Sum_probs=87.1
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------------CCCCceeeeceeeEEEecC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------------ANYPFTTLLPNLGVVSFDY 386 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------------a~ypfTTl~p~lg~v~~~~ 386 (518)
+.+.+|++||.+|+|||||+++|+.....+ ...+++|++.....+.+.
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 456799999999999999999996432111 113456776666656554
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-------CHHHHHHHHHHHHhcCCCCCCCC-EEE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-------PEFEFDAVRLELEMFSPEIAEKP-YIV 458 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-------s~e~~~~L~~eL~~~~~~l~~kP-iIV 458 (518)
+..+.||||||+.+ +...+...+..||++|+|||++... ..+....+. .+.. ...| +||
T Consensus 254 ~~~i~iiDTPGh~~-------f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-~~~~-----lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRD-------FISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-LLRA-----LGISEIVV 320 (592)
T ss_dssp -----CCEEESSSE-------EEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-HHHH-----SSCCCEEE
T ss_pred CeEEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-HHHH-----cCCCeEEE
Confidence 46899999999876 3344566778899999999998642 222233322 2222 2455 999
Q ss_pred EEeCCCCCCc-ccc----hHHHHHHH-HhcCC-----ceEEEeccCCCCHH--------------HHHHHHHHHHH
Q 046233 459 AFNKMDLPEA-YEK----WPSFKEKL-QARGI-----EPFCMSAVKREGTH--------------EVISAAYQLLQ 509 (518)
Q Consensus 459 VlNKiDL~~~-~e~----~eel~~~l-~~~g~-----~i~~ISAktgeGI~--------------eL~~~L~e~L~ 509 (518)
|+||+|+... .+. ..++...+ ...++ ++++|||++|.||. .|++.|...++
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 9999999752 122 23344444 33343 79999999999998 67777766543
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.63 E-value=2.4e-16 Score=167.06 Aligned_cols=150 Identities=16% Similarity=0.140 Sum_probs=96.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCC-------------------------------CCCceeeeceeeEEEecCC
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIA-------------------------------NYPFTTLLPNLGVVSFDYD 387 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia-------------------------------~ypfTTl~p~lg~v~~~~~ 387 (518)
...+|+++|.+|+|||||+++|+.....+. ..+.+|++.....+... .
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~-~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK-K 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS-S
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC-C
Confidence 346899999999999999999986421110 12445666555555544 5
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHH-------HHHHHHHHHHhcCCCCCCCCEEEEE
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEF-------EFDAVRLELEMFSPEIAEKPYIVAF 460 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e-------~~~~L~~eL~~~~~~l~~kPiIVVl 460 (518)
..+.||||||+.+ +...+...+..+|++|+|||+++ .+++ +.......+... ...|++||+
T Consensus 84 ~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~----~~~~iivvi 151 (435)
T 1jny_A 84 YFFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM----GLDQLIVAV 151 (435)
T ss_dssp CEEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT----TCTTCEEEE
T ss_pred eEEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc----CCCeEEEEE
Confidence 7899999999866 33456777889999999999998 4333 222222222221 224689999
Q ss_pred eCCCCCCcc---c----chHHHHHHHHhcC-----CceEEEeccCCCCHHHHH
Q 046233 461 NKMDLPEAY---E----KWPSFKEKLQARG-----IEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 461 NKiDL~~~~---e----~~eel~~~l~~~g-----~~i~~ISAktgeGI~eL~ 501 (518)
||+|+.... + ..+++.+.+...+ ++++++||++|.|+.+++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999998631 1 1234555555544 679999999999998544
No 171
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=1.6e-15 Score=159.53 Aligned_cols=170 Identities=27% Similarity=0.406 Sum_probs=129.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCC----------------ceEEEEcCCCCcccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYD----------------STMVVADLPGLLEGA 402 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~----------------~~l~I~DTPGliega 402 (518)
-..|+|||.||||||||+|+|++... .++++||+|+.|+.|.+.+.+. ..+.+||+||+..++
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 35899999999999999999999887 7899999999999999988631 358999999999999
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCCC----------CCHHHHHHH--------------------------------
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSAE----------QPEFEFDAV-------------------------------- 440 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~~----------~s~e~~~~L-------------------------------- 440 (518)
+.+.+++..|+.+++.+|++++|+|+.+. ++..++..+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~s 179 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEM 179 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 98888999999999999999999998751 221111100
Q ss_pred -------------HHHHHhc-C------------------CCCCCCCEEEEEeCCCCC---CcccchHHHHHHHHhcC--
Q 046233 441 -------------RLELEMF-S------------------PEIAEKPYIVAFNKMDLP---EAYEKWPSFKEKLQARG-- 483 (518)
Q Consensus 441 -------------~~eL~~~-~------------------~~l~~kPiIVVlNKiDL~---~~~e~~eel~~~l~~~g-- 483 (518)
...|... . ..+..+|+++|+|+.|.. .....+..+++.+...+
T Consensus 180 h~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~ 259 (392)
T 1ni3_A 180 KAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPG 259 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTT
T ss_pred ccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchhhcccchHHHHHHHHHHHhcCCC
Confidence 0011111 0 012358999999999842 22445667777776654
Q ss_pred CceEEEeccC---------------------CCCHHHHHHHHHHHHH
Q 046233 484 IEPFCMSAVK---------------------REGTHEVISAAYQLLQ 509 (518)
Q Consensus 484 ~~i~~ISAkt---------------------geGI~eL~~~L~e~L~ 509 (518)
.+++++||+. ..|++.|+...+++|.
T Consensus 260 ~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~ 306 (392)
T 1ni3_A 260 DTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALN 306 (392)
T ss_dssp CCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred CeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhC
Confidence 6899999986 6889998888887765
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=1e-15 Score=143.34 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=103.2
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCC--CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccC------CC
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQP--TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQG------FG 407 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~--~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~------~g 407 (518)
.+..-.+|+|+|.+|||||||+++|++..+ .+.+.+++|.. .+.+.+.. .+.+|||||+....... ..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD--GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET--TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC--CEEEEECcCCcccccCHHHHHHHHH
Confidence 344456899999999999999999998752 22344555543 23444442 68999999985421000 00
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc---hHHHHHHHHhc--
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK---WPSFKEKLQAR-- 482 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~---~eel~~~l~~~-- 482 (518)
....++.+...++.+++|+|++...+.... .+..++.. ...|+++|+||+|+....+. ...+...+...
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 112233444578999999999886654332 23344432 46899999999999864321 23444444443
Q ss_pred CCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 483 GIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 483 g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.+.++++||+++.|+++++++|.+.+...
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 35778999999999999999999887653
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=2.8e-16 Score=168.26 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=90.6
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCCCC-------------------------C------CCCceeeeceeeEEEe
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQPTI-------------------------A------NYPFTTLLPNLGVVSF 384 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-------------------------a------~ypfTTl~p~lg~v~~ 384 (518)
.-+...+|+++|.+++|||||+++|+.....+ . ....+|++.....+.+
T Consensus 39 ~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~ 118 (467)
T 1r5b_A 39 YGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET 118 (467)
T ss_dssp SCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC
T ss_pred cCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec
Confidence 34566799999999999999999997532111 0 1234555555445555
Q ss_pred cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCC-------HHHHHHHHHHHHhcCCCCCCCC-E
Q 046233 385 DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQP-------EFEFDAVRLELEMFSPEIAEKP-Y 456 (518)
Q Consensus 385 ~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s-------~e~~~~L~~eL~~~~~~l~~kP-i 456 (518)
+ +..+.||||||+.+ +...+.+.+..+|++|+|||+++... .+..+.+. .+.. .+.| +
T Consensus 119 ~-~~~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~-----~~vp~i 184 (467)
T 1r5b_A 119 E-HRRFSLLDAPGHKG-------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LART-----QGINHL 184 (467)
T ss_dssp S-SEEEEECCCCC------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHH-----TTCSSE
T ss_pred C-CeEEEEEECCCcHH-------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHH-----cCCCEE
Confidence 5 57899999999865 33456677788999999999987521 11222222 2221 3566 9
Q ss_pred EEEEeCCCCCCcc---c----chHHHHHHHHhc-------CCceEEEeccCCCCHHHHH
Q 046233 457 IVAFNKMDLPEAY---E----KWPSFKEKLQAR-------GIEPFCMSAVKREGTHEVI 501 (518)
Q Consensus 457 IVVlNKiDL~~~~---e----~~eel~~~l~~~-------g~~i~~ISAktgeGI~eL~ 501 (518)
|||+||+|+.... + ...++.+.+... .++++++||++|.|+.+++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999999996421 1 122345555444 3569999999999998765
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.60 E-value=7.5e-16 Score=164.54 Aligned_cols=147 Identities=19% Similarity=0.135 Sum_probs=98.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCC-------------------------C------CCceeeeceeeEEEecCCc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIA-------------------------N------YPFTTLLPNLGVVSFDYDS 388 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia-------------------------~------ypfTTl~p~lg~v~~~~~~ 388 (518)
..+|+++|.+|+|||||+++|+.....+. + ...+|++.....+... ..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~-~~ 85 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-KY 85 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS-SE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC-Cc
Confidence 35899999999999999999986421110 0 1345665555445544 46
Q ss_pred eEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCH-------HHHHHHHHHHHhcCCCCCCCC-EEEEE
Q 046233 389 TMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPE-------FEFDAVRLELEMFSPEIAEKP-YIVAF 460 (518)
Q Consensus 389 ~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~-------e~~~~L~~eL~~~~~~l~~kP-iIVVl 460 (518)
.+.||||||+.+ +...+...+..+|++|+|||+++.... +..+.+ ..+.. .+.| +|||+
T Consensus 86 ~~~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~-----~~v~~iivvi 152 (458)
T 1f60_A 86 QVTVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-----LGVRQLIVAV 152 (458)
T ss_dssp EEEEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-----TTCCEEEEEE
T ss_pred eEEEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH-----cCCCeEEEEE
Confidence 899999999764 445567778899999999999864211 222222 22221 2455 89999
Q ss_pred eCCCCCCc-ccc----hHHHHHHHHhcC-----CceEEEeccCCCCHHHH
Q 046233 461 NKMDLPEA-YEK----WPSFKEKLQARG-----IEPFCMSAVKREGTHEV 500 (518)
Q Consensus 461 NKiDL~~~-~e~----~eel~~~l~~~g-----~~i~~ISAktgeGI~eL 500 (518)
||+|+... .+. .+++.+++...+ ++++++||++|.|+.++
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99999842 122 233444444443 68999999999999754
No 175
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.59 E-value=4.9e-15 Score=166.02 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=109.0
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC-CCCCce--------------eeece-------------------------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI-ANYPFT--------------TLLPN------------------------- 378 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I-a~ypfT--------------Tl~p~------------------------- 378 (518)
...+|+|+|.+|||||||+|+|++..... +..|.| |+...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 45689999999999999999999876533 444544 22100
Q ss_pred ------------eeE--EEecCC---ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHH
Q 046233 379 ------------LGV--VSFDYD---STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVR 441 (518)
Q Consensus 379 ------------lg~--v~~~~~---~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~ 441 (518)
+.. +.++.. ..+.||||||+..... ....+..++..||++|||+|+++..+..+...|.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~ 223 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPCTLGERRYLE 223 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH
Confidence 000 001100 3699999999865321 2234556677899999999999887777666554
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCCcc----cc---hH----HHH----HHHHh---------cCCceEEEecc-----
Q 046233 442 LELEMFSPEIAEKPYIVAFNKMDLPEAY----EK---WP----SFK----EKLQA---------RGIEPFCMSAV----- 492 (518)
Q Consensus 442 ~eL~~~~~~l~~kPiIVVlNKiDL~~~~----e~---~e----el~----~~l~~---------~g~~i~~ISAk----- 492 (518)
..+.. ..+|+++|+||+|+.... +. ++ .+. ..+.. ...++++|||+
T Consensus 224 ~~l~~-----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~ 298 (695)
T 2j69_A 224 NYIKG-----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRR 298 (695)
T ss_dssp HHTTT-----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHH
T ss_pred HHHHh-----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHh
Confidence 44431 357899999999997542 10 11 121 11221 12379999999
Q ss_pred ---------CCCCHHHHHHHHHHHHHhh
Q 046233 493 ---------KREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 493 ---------tgeGI~eL~~~L~e~L~~~ 511 (518)
++.|+++|+.+|.+.+...
T Consensus 299 ~~~~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 299 RLKNPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp HHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred hccCchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999887543
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=8.1e-15 Score=144.46 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=87.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcccc-
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTE- 417 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~Ie- 417 (518)
-.+|+|+|.+|||||||+++|++... .+..++.+|.......+.++ +..+.||||||+.+.... ...+++.+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~liDTpG~~~~~~~----~~~~~~~i~~ 110 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG-GFTINIIDTPGLVEAGYV----NHQALELIKG 110 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET-TEEEEEEECCCSEETTEE----CHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC-CeeEEEEECCCCCCcccc----hHHHHHHHHH
Confidence 35899999999999999999998775 45778888888877777776 579999999999775432 233443332
Q ss_pred -----ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 418 -----RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 418 -----rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
.+|++|||+|+...........+..++.........+|+++|+||+|+..
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 78999999988764432222344445543221112359999999999963
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.58 E-value=1.1e-14 Score=163.20 Aligned_cols=117 Identities=24% Similarity=0.222 Sum_probs=82.8
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCC------------CC------CCceeeeceeeEEEecCCceEEEEcCCCCc
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTI------------AN------YPFTTLLPNLGVVSFDYDSTMVVADLPGLL 399 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------------a~------ypfTTl~p~lg~v~~~~~~~l~I~DTPGli 399 (518)
+.+.+|+|+|.+|||||||+++|+.....+ .+ ...+|+......+.+. +..+.||||||+.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~-~~~i~liDTPG~~ 88 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK-DHRINIIDTPGHV 88 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET-TEEEEEECCCSST
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC-CeEEEEEECcCcc
Confidence 346799999999999999999998422111 11 2345665555556655 5789999999986
Q ss_pred cccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 400 EGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 400 egas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+ +...+.+.+..||++|+|+|+++.........|.. +.. .+.|+++|+||+|+...
T Consensus 89 d-------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 D-------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK-----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp T-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTTC
T ss_pred c-------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH-----cCCCEEEEEECCCcccC
Confidence 5 34456777888999999999999877776665544 332 36899999999999753
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=7.4e-15 Score=164.51 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=83.3
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCC------------CCC------CCceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPT------------IAN------YPFTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~------------Ia~------ypfTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
.+.+|+|+|.+|||||||+++|+..... +.+ .+.+|+......+.+. +..+.||||||+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE-GHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET-TEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC-CeeEEEEECcCCcc
Confidence 3568999999999999999999853211 111 2456666666666665 57899999999866
Q ss_pred ccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 401 GAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 401 gas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+...+.+.+..||++|+|+|+++.....+...|.. +.. .+.|+++|+||+|+...
T Consensus 88 -------f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 -------FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp -------CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTTC
T ss_pred -------hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEECCCcccc
Confidence 34456777888999999999998777666655543 332 36899999999999753
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.57 E-value=1.4e-14 Score=157.53 Aligned_cols=119 Identities=17% Similarity=0.241 Sum_probs=80.6
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccCCCC----------------C------CCCceeeeceeeEEEecCCceEEEE
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQPTI----------------A------NYPFTTLLPNLGVVSFDYDSTMVVA 393 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I----------------a------~ypfTTl~p~lg~v~~~~~~~l~I~ 393 (518)
+.+...+|+++|.+|||||||+++|+.....+ . .....|+......+.+. +..+.||
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~li 87 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH-DCLVNLL 87 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET-TEEEEEE
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC-CeEEEEE
Confidence 44556799999999999999999998642211 0 12223333333444544 5789999
Q ss_pred cCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 394 DLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 394 DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
||||+.+ +...+.+++..+|++|+|+|+++...... ..++..+. ..+.|+++|+||+|+...
T Consensus 88 DTPG~~d-------f~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~-----~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 88 DTPGHED-------FSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR-----LRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCCSTT-------CCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT-----TTTCCEEEEEECTTSCCS
T ss_pred ECCCChh-------HHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH-----HcCCCEEEEEcCcCCccc
Confidence 9999865 33456777888999999999998654433 22333332 246899999999999753
No 180
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4e-15 Score=137.21 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=74.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhh-ccccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFL-RHTER 418 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fL-r~Ier 418 (518)
..+|+++|.+|||||||+++|++...... ..+..+.... .+ ....+.+|||||+..... ....++ ..+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~---~~~~~~~~~~-~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~~ 118 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA-DY-DGSGVTLVDFPGHVKLRY----KLSDYLKTRAKF 118 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC-CCTTCSEEEETTCCBSSC----CHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcc---cccCCCceee-ee-cCCeEEEEECCCCchHHH----HHHHHHHhhccc
Confidence 45899999999999999999998754221 1111222111 11 246799999999865322 222333 23456
Q ss_pred cCceEEEEeCC-CCCCHHHHHHHHHHHHhc-CC-CCCCCCEEEEEeCCCCCCccc
Q 046233 419 CSALVHVIDGS-AEQPEFEFDAVRLELEMF-SP-EIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 419 ADvlL~VVDaS-~~~s~e~~~~L~~eL~~~-~~-~l~~kPiIVVlNKiDL~~~~e 470 (518)
+|++|+|+|++ +..++.....+...+... .. .....|+++|+||+|+.....
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999998 555554444333332211 00 124689999999999986543
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.56 E-value=5.4e-15 Score=152.30 Aligned_cols=163 Identities=14% Similarity=0.106 Sum_probs=98.7
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeecee---------------------------------------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNL--------------------------------------- 379 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~l--------------------------------------- 379 (518)
.++.|+|||.+|||||||+++|++...........|..|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999965311111111111100
Q ss_pred ---------------eEEEecCCceEEEEcCCCCccccccC------CCcchhhhccccccCceEEEEeCCCCCCHHHHH
Q 046233 380 ---------------GVVSFDYDSTMVVADLPGLLEGAHQG------FGLGHEFLRHTERCSALVHVIDGSAEQPEFEFD 438 (518)
Q Consensus 380 ---------------g~v~~~~~~~l~I~DTPGliegas~~------~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~ 438 (518)
-.+.......++||||||+......+ ..+......++..+|++|+|+|.++.+... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00111223479999999998743211 111233445678899999999987644322 1
Q ss_pred HHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHH-HHHhcCCceEEEeccCCCCHHHHHHHHH
Q 046233 439 AVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKE-KLQARGIEPFCMSAVKREGTHEVISAAY 505 (518)
Q Consensus 439 ~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~-~l~~~g~~i~~ISAktgeGI~eL~~~L~ 505 (518)
.+...+..+.+ ..+|+|+|+||+|+.........+.+ .....+..++++|++++.++++.+.++.
T Consensus 191 ~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 22333444433 46799999999999865443322211 1112367899999999888877655443
No 182
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.55 E-value=8.7e-15 Score=170.18 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=104.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCC----------------CCCCCceeeeceeeEEEecCCceEEEEcCCCCcccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPT----------------IANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGA 402 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~----------------Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliega 402 (518)
...+|+++|.+++|||||+++|++.... .....+.|++.....+... ...+.||||||+.+
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~-~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP-TRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-SCEEEEEECCCHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-CEEEEEEECCChHH--
Confidence 3468999999999999999999874110 0012233443322222222 47899999999865
Q ss_pred ccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEeCCCCCCcccch----HHHHH
Q 046233 403 HQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFNKMDLPEAYEKW----PSFKE 477 (518)
Q Consensus 403 s~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlNKiDL~~~~e~~----eel~~ 477 (518)
+...+.+.+..+|++|+|||+++....+..+.+ ..+.. .+.| +|||+||+|+....+.. +++.+
T Consensus 372 -----F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL-~ll~~-----lgIP~IIVVINKiDLv~d~e~le~i~eEi~e 440 (1289)
T 3avx_A 372 -----YVKNMITGAAQMDGAILVVAATDGPMPQTREHI-LLGRQ-----VGVPYIIVFLNKCDMVDDEELLELVEMEVRE 440 (1289)
T ss_dssp -----HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH-HHHHH-----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH-HHHHH-----cCCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence 334566678889999999999986544444433 33332 2577 78999999998633222 34445
Q ss_pred HHHhcC-----CceEEEeccCC--------CCHHHHHHHHHHHHHh
Q 046233 478 KLQARG-----IEPFCMSAVKR--------EGTHEVISAAYQLLQK 510 (518)
Q Consensus 478 ~l~~~g-----~~i~~ISAktg--------eGI~eL~~~L~e~L~~ 510 (518)
.+...+ ++++++||+++ .||.+|+++|.+.++.
T Consensus 441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 555443 68999999999 4688999998876653
No 183
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=8.8e-15 Score=151.77 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=78.7
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCCCCCCC-------ceeeeceeeE--EEecC-CceEEEEcCCCCccccc---cCC
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPTIANYP-------FTTLLPNLGV--VSFDY-DSTMVVADLPGLLEGAH---QGF 406 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~yp-------fTTl~p~lg~--v~~~~-~~~l~I~DTPGliegas---~~~ 406 (518)
..+|+|||.+|||||||+++|++.......+. ..|+...... +.... ...+++|||||+.+... ...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 35899999999999999999887644332221 1222211111 11111 13689999999954221 111
Q ss_pred Ccch-------hhhcccc----------ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc
Q 046233 407 GLGH-------EFLRHTE----------RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY 469 (518)
Q Consensus 407 gLg~-------~fLr~Ie----------rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~ 469 (518)
.+.. .+++... +++++||+++.+. .++..... .+++... ...|+|+|+||+|+....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-~~l~~~d~--~~~~~l~---~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIH---NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHTC---S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-CCcchhHH--HHHHHhc---cCCCEEEEEECCCCCCHH
Confidence 2322 3333211 2356777777532 22223321 2222222 468999999999998754
Q ss_pred cch---HHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 470 EKW---PSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 470 e~~---eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
+.. +.+.+.+...+++++++||+++.+ ++.|.++.+.+..
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 432 244444555688999999999998 7777777766643
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.53 E-value=2.7e-14 Score=147.31 Aligned_cols=104 Identities=15% Similarity=0.088 Sum_probs=71.6
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
+..++||||||+.. .....+..+|++|+|+|+...+....+ ...+..+|+++|+||+|+.
T Consensus 171 ~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~~~~~l----------~~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 171 GFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGDQLQGI----------KKGVLELADIVVVNKADGE 230 (355)
T ss_dssp TCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTCTTTTC----------CTTSGGGCSEEEEECCCGG
T ss_pred CCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCccHHHH----------HHhHhhcCCEEEEECCCCc
Confidence 46899999999643 122234679999999998765432211 1223457999999999997
Q ss_pred Ccccc---hHHHHHHHHhc-------CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 467 EAYEK---WPSFKEKLQAR-------GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 467 ~~~e~---~eel~~~l~~~-------g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
..... ..++...+... +.++++|||+++.||++|+++|.+.+..
T Consensus 231 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 231 HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 54221 12233333211 4689999999999999999999998765
No 185
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.53 E-value=6e-14 Score=156.41 Aligned_cols=116 Identities=20% Similarity=0.209 Sum_probs=80.7
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCCCC------------CCC------CceeeeceeeEEEecCCceEEEEcCCCC
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQPTI------------ANY------PFTTLLPNLGVVSFDYDSTMVVADLPGL 398 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------------a~y------pfTTl~p~lg~v~~~~~~~l~I~DTPGl 398 (518)
++...+|+|+|.+|||||||+++|+.....+ .++ ...|+......+.+. ...+.||||||+
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~nliDTpG~ 84 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRVFLLDAPGY 84 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEEEEEECCCS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC-CEEEEEEeCCCc
Confidence 3456789999999999999999998543211 111 123444444444444 578999999998
Q ss_pred ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 399 LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 399 iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
.+ +...+.+.+..+|++++|+|+++........ ++..+.. .+.|+++|+||+|+.
T Consensus 85 ~~-------f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~-~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GD-------FVGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GG-------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH-----TTCCEEEEEECGGGC
T ss_pred cc-------hHHHHHHHHhhcCcEEEEEcCCcccchhHHH-HHHHHHH-----ccCCEEEEecCCchh
Confidence 65 3344666778899999999998765544443 3333432 368999999999997
No 186
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.52 E-value=7.9e-14 Score=156.48 Aligned_cols=117 Identities=20% Similarity=0.109 Sum_probs=80.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCC------------CC------CCceeeeceeeEEEecC------CceEEEEc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTI------------AN------YPFTTLLPNLGVVSFDY------DSTMVVAD 394 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~I------------a~------ypfTTl~p~lg~v~~~~------~~~l~I~D 394 (518)
.+.+|+|+|.+|+|||||+++|+.....+ .+ ....|+......+.+.. ...+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45689999999999999999997532111 11 12344444444444442 16899999
Q ss_pred CCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 395 LPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 395 TPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
|||+.+ +...+.+.+..||++|+|+|+++.........|.. +.. .+.|+++|+||+|+...
T Consensus 89 TPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~-----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVD-------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK-----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccc-------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEeCCCcccc
Confidence 999876 33345667778999999999998766555544433 321 36899999999998753
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.52 E-value=5.1e-14 Score=139.16 Aligned_cols=129 Identities=17% Similarity=0.076 Sum_probs=83.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhcc--c
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRH--T 416 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~--I 416 (518)
..+|+++|.+|||||||+|+|++... .+..++.+|..+....+... +..+.||||||+.+.......+...+.++ .
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 117 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-GFTLNIIDTPGLIEGGYINDMALNIIKSFLLD 117 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-TEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-CeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence 46899999999999999999998765 34667777776665555554 57899999999976433211111111111 2
Q ss_pred cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcc
Q 046233 417 ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAY 469 (518)
Q Consensus 417 erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~ 469 (518)
..+|++|||+|++..........+...+.........+|+++|+||+|+....
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 46999999998865322222223444443221111126999999999997543
No 188
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.52 E-value=3.6e-15 Score=153.57 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=94.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC------CCCCCc----------------------eeeec-----------e--
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT------IANYPF----------------------TTLLP-----------N-- 378 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~------Ia~ypf----------------------TTl~p-----------~-- 378 (518)
.++|+|||.+|||||||+|+|++.... +...|. +|.+. .
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 469999999999999999999987642 122233 22210 0
Q ss_pred --eeE------E--EecCCceEEEEcCCCCccccccC--C----Ccchhhhcccc-ccCceEEEEeCCCCCCHHHHHHHH
Q 046233 379 --LGV------V--SFDYDSTMVVADLPGLLEGAHQG--F----GLGHEFLRHTE-RCSALVHVIDGSAEQPEFEFDAVR 441 (518)
Q Consensus 379 --lg~------v--~~~~~~~l~I~DTPGliegas~~--~----gLg~~fLr~Ie-rADvlL~VVDaS~~~s~e~~~~L~ 441 (518)
.++ + .......++||||||+......+ . .+......++. .++++++|+|++......+...+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i- 189 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV- 189 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH-
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH-
Confidence 010 1 11123579999999987532110 0 11112223333 34566677777653222222222
Q ss_pred HHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHH-HHHh--cC-CceEEEeccCCCCHHHHHHHHHH
Q 046233 442 LELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKE-KLQA--RG-IEPFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 442 ~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~-~l~~--~g-~~i~~ISAktgeGI~eL~~~L~e 506 (518)
++.+.+ ...|+++|+||+|+.........+.+ .... .+ .+++++||+++.|+++|++++.+
T Consensus 190 --~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 --AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp --HHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred --HHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 333332 46899999999999865432222211 0000 12 25788999999999999998876
No 189
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.48 E-value=6.9e-14 Score=144.43 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=89.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccC------CCC-C-------------------------CCCceeeeceeeEE---E-
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQ------PTI-A-------------------------NYPFTTLLPNLGVV---S- 383 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak------~~I-a-------------------------~ypfTTl~p~lg~v---~- 383 (518)
...|+|+|+||||||||+|+|++.. ..+ + +..+.|..+..+.+ .
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 5689999999999999999998631 111 1 11122222211111 0
Q ss_pred --------e-cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCC
Q 046233 384 --------F-DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK 454 (518)
Q Consensus 384 --------~-~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~k 454 (518)
+ ..+..+.|+||||+... .....+.+|++++|+|++....... +.. .+...
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----------~~~l~~~~d~vl~V~d~~~~~~~~~---i~~-------~il~~ 213 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----------EFAVADMVDMFVLLLPPAGGDELQG---IKR-------GIIEM 213 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----------HHHHHTTCSEEEEEECCC----------------------CCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----------hhhHHhhCCEEEEEEcCCcchhHHH---hHH-------HHHhc
Confidence 0 12467899999997431 1222457999999999986532211 111 12356
Q ss_pred CEEEEEeCCCCCCccc---chHHHHHHHHh-------cCCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 455 PYIVAFNKMDLPEAYE---KWPSFKEKLQA-------RGIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 455 PiIVVlNKiDL~~~~e---~~eel~~~l~~-------~g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
|.++|+||+|+..... ....+...+.. ...+++++||+++.|+++|+++|.+.+..
T Consensus 214 ~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 214 ADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 8899999999974321 11222222221 13478999999999999999999987653
No 190
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.47 E-value=2.4e-13 Score=148.58 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=90.5
Q ss_pred hhhhhheeceeeeeeCCCCCChhHHHHHHhccCC----------------CC------CCCCceeeeceeeEEEecCCce
Q 046233 332 WLELELKLVADVGIVGAPNAGKSTLLSVISAAQP----------------TI------ANYPFTTLLPNLGVVSFDYDST 389 (518)
Q Consensus 332 ~l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak~----------------~I------a~ypfTTl~p~lg~v~~~~~~~ 389 (518)
.+..|...+.+|+|||...+|||||..+|+...- .+ ......|+......+.+. +..
T Consensus 23 ~~~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~-~~~ 101 (548)
T 3vqt_A 23 RLEREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYR-DRV 101 (548)
T ss_dssp HHHHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEET-TEE
T ss_pred hhhhcccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEEC-CEE
Confidence 3555677889999999999999999999953211 11 122355666666667776 589
Q ss_pred EEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 390 MVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 390 l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+.|+||||+.+ +..+..+.++-||.+|+|||+...-..++...|....+ .+.|.|+++||+|...+
T Consensus 102 iNlIDTPGHvD-------F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~------~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 102 VNLLDTPGHQD-------FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM------RATPVMTFVNKMDREAL 167 (548)
T ss_dssp EEEECCCCGGG-------CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCCEEEEEECTTSCCC
T ss_pred EEEEeCCCcHH-------HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH------hCCceEEEEecccchhc
Confidence 99999999987 55567888889999999999998766666655544443 47899999999998754
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.47 E-value=1.1e-13 Score=130.87 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=95.6
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCC------CCCCCceeeec------eeeEEEec-------------------C
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPT------IANYPFTTLLP------NLGVVSFD-------------------Y 386 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~------Ia~ypfTTl~p------~lg~v~~~-------------------~ 386 (518)
+.++.|+|+|.+|||||||+++|+..... +...++++.+. ....+.++ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 45678999999999999999999875211 11122221111 00011111 1
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
...+.+|||+|+..... ++. ..++.+++|+|++..... . ...+.. ...|+++|+||+|+.
T Consensus 108 ~~d~iiidt~G~~~~~~--------~~~--~~~~~~i~vvd~~~~~~~--~---~~~~~~-----~~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV--------DFD--LGENYRVVMVSVTEGDDV--V---EKHPEI-----FRVADLIVINKVALA 167 (221)
T ss_dssp TCSEEEEEEEEBSSGGG--------GCC--CSCSEEEEEEEGGGCTTH--H---HHCHHH-----HHTCSEEEEECGGGH
T ss_pred CCCEEEEeCCCCCCCCc--------hhc--cccCcEEEEEeCCCcchh--h---hhhhhh-----hhcCCEEEEecccCC
Confidence 34688899988522110 111 135789999999875421 1 111111 247899999999996
Q ss_pred Ccc-cchHHHHHHHHhc--CCceEEEeccCCCCHHHHHHHHHHHHHhhhH
Q 046233 467 EAY-EKWPSFKEKLQAR--GIEPFCMSAVKREGTHEVISAAYQLLQKNKE 513 (518)
Q Consensus 467 ~~~-e~~eel~~~l~~~--g~~i~~ISAktgeGI~eL~~~L~e~L~~~~~ 513 (518)
... ...+.+.+.+... .++++++||+++.|+++|+++|.+.+.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 168 EAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp HHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred cchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 432 2345555555543 4689999999999999999999998866543
No 192
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=1.4e-13 Score=155.28 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=101.1
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeec-----------------------------------------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLP----------------------------------------- 377 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p----------------------------------------- 377 (518)
.+++|+|||.+|||||||+|+|++...-......+|..|
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 467999999999999999999999754111111122111
Q ss_pred ----------eeeEEEecCCceEEEEcCCCCccccccC------CCcchhhhccc-cccCceEEEEeCCCCCCHHHHHHH
Q 046233 378 ----------NLGVVSFDYDSTMVVADLPGLLEGAHQG------FGLGHEFLRHT-ERCSALVHVIDGSAEQPEFEFDAV 440 (518)
Q Consensus 378 ----------~lg~v~~~~~~~l~I~DTPGliegas~~------~gLg~~fLr~I-erADvlL~VVDaS~~~s~e~~~~L 440 (518)
..-.+......+++|+||||+....... ..+......++ ..+|++|+|+|++......+...+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 1111222333479999999998632110 01111112222 578999999999875444443234
Q ss_pred HHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHH-HHh--cC-CceEEEeccCCCCHHHHHHHHHH
Q 046233 441 RLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEK-LQA--RG-IEPFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 441 ~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~-l~~--~g-~~i~~ISAktgeGI~eL~~~L~e 506 (518)
..++. + ..+|+|+|+||+|+.........+... +.. .+ .+++++||+++.|+++|++.|.+
T Consensus 210 l~~L~---~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 210 AKEVD---P--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHC---T--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHH---h--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 44443 2 468999999999998654433322210 000 12 36788999999999999999986
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.39 E-value=1.3e-12 Score=126.84 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHH-HHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRL-ELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~-eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
..+.||||||+.+..... .++..+.+++.. +++|+|+|++......++..... .+... ....+|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~-~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFH-EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHS-HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhh-hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEeccccc
Confidence 379999999987643211 123334456666 89999999876544443322211 11100 01358999999999997
Q ss_pred CcccchHHHHH----------H------------------HHhc--CCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 467 EAYEKWPSFKE----------K------------------LQAR--GIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 467 ~~~e~~eel~~----------~------------------l~~~--g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
...+ .+.+.+ . +... ..+++++||+++.|+++|+++|.+.+..
T Consensus 185 ~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 185 SEEE-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CHHH-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccc-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 6432 111111 1 1222 2489999999999999999999988764
No 194
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.37 E-value=9.8e-13 Score=135.09 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=91.6
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccC------CC-CCCCCceeee-----------------ceeeEEEe--------
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQ------PT-IANYPFTTLL-----------------PNLGVVSF-------- 384 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak------~~-Ia~ypfTTl~-----------------p~lg~v~~-------- 384 (518)
......|+++|.+|||||||+++|+... .. +...+++|.. +...+...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 3455689999999999999999997431 11 1122222210 11000000
Q ss_pred -------------cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCC
Q 046233 385 -------------DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEI 451 (518)
Q Consensus 385 -------------~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l 451 (518)
..+..+.||||||+..... . ....+|++|+|+|++..+.... +....
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~-------~---~~~~aD~vl~Vvd~~~~~~~~~---l~~~~------- 192 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET-------E---VARMVDCFISLQIAGGGDDLQG---IKKGL------- 192 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH-------H---HHTTCSEEEEEECC------CC---CCHHH-------
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH-------H---HHHhCCEEEEEEeCCccHHHHH---HHHhh-------
Confidence 1246899999999865221 1 2467999999999976432111 11110
Q ss_pred CCCCEEEEEeCCCCCCcccch---HHHHHHHHhc-------CCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 452 AEKPYIVAFNKMDLPEAYEKW---PSFKEKLQAR-------GIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 452 ~~kPiIVVlNKiDL~~~~e~~---eel~~~l~~~-------g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
...|.++|+||+|+....... .++.+.+... ..++++|||+++.|+++|+++|.+.+.
T Consensus 193 ~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 193 MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 146889999999997642211 2333333221 347899999999999999999998765
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.36 E-value=1.2e-12 Score=132.32 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=81.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCC-C------ceeee-ceeeEEEe--cCCceEEEEcCCCCccccc---cCCC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANY-P------FTTLL-PNLGVVSF--DYDSTMVVADLPGLLEGAH---QGFG 407 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~y-p------fTTl~-p~lg~v~~--~~~~~l~I~DTPGliegas---~~~g 407 (518)
.+|+|||.+|||||||+++|.+.......+ + ..|.. ...+.+.. .....+++|||||+..... ....
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 477999999999999999988752211111 0 01111 11222211 1124789999999842210 1111
Q ss_pred cch-------hhhcc----------ccccCceEEEEeCCC--CCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 408 LGH-------EFLRH----------TERCSALVHVIDGSA--EQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 408 Lg~-------~fLr~----------IerADvlL~VVDaS~--~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+.. .+++. +.+++++||+++.+. .++.. . ..++... ...|+++|+||+|+...
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~-~----~~l~~l~---~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD-V----AFMKAIH---NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH-H----HHHHHHT---TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH-H----HHHHHHH---hcCCEEEEEEeCCCCCH
Confidence 221 22222 123455677766543 23322 2 2233322 35799999999999865
Q ss_pred ccc---hHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHh
Q 046233 469 YEK---WPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQK 510 (518)
Q Consensus 469 ~e~---~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~ 510 (518)
.+. .+++.+.+...+++++++||+++ |++++|.++.+.+..
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 432 23556666777899999999999 999999999887754
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.34 E-value=1.3e-12 Score=149.31 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=83.0
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCC----------------CCCceeeeceeeEEEec---------------C
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIA----------------NYPFTTLLPNLGVVSFD---------------Y 386 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia----------------~ypfTTl~p~lg~v~~~---------------~ 386 (518)
..+.+|+|+|.+|||||||+++|+.....+. .....|+......+.+. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4567999999999999999999986532111 11233444433333332 1
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
...+.||||||+.+ +...+.+.++.||++|+|||+++....++...|...+. .+.|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCS-------SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchh-------hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCeEEEEECCCcc
Confidence 35799999999976 33456677788999999999999878777665554433 368999999999987
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.34 E-value=1.4e-12 Score=142.42 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=80.9
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCC---CCCCCceeeeceeeEEE--------------------------------
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPT---IANYPFTTLLPNLGVVS-------------------------------- 383 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~ypfTTl~p~lg~v~-------------------------------- 383 (518)
..+.|+|+|.+|||||||+|+|++.+.. ++..|.|+... +++.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE--EEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE--EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3568999999999999999999998753 56666654311 1110
Q ss_pred ------ecCC--ceEEEEcCCCCcccccc--CCC--cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCC
Q 046233 384 ------FDYD--STMVVADLPGLLEGAHQ--GFG--LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEI 451 (518)
Q Consensus 384 ------~~~~--~~l~I~DTPGliegas~--~~g--Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l 451 (518)
+... ..++||||||+...... .+. +.......+..+|++|+|+|+++.........+...+. .
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-----~ 216 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-----G 216 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-----T
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-----h
Confidence 0000 36899999999763221 111 11223345678999999999988544444444444443 1
Q ss_pred CCCCEEEEEeCCCCCCccc
Q 046233 452 AEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 452 ~~kPiIVVlNKiDL~~~~e 470 (518)
...|+++|+||+|+....+
T Consensus 217 ~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp CGGGEEEEEECGGGSCHHH
T ss_pred cCCCEEEEEECCCccCHHH
Confidence 3579999999999986543
No 198
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.33 E-value=3.5e-12 Score=120.96 Aligned_cols=151 Identities=16% Similarity=0.184 Sum_probs=90.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeee--ce------------eeEEEecC-----------------
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLL--PN------------LGVVSFDY----------------- 386 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~--p~------------lg~v~~~~----------------- 386 (518)
+...+|+|+|.+|||||||+++|+...... +...|+. +. ...+.++.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALED 113 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHH
Confidence 346799999999999999999998764321 1111221 11 11111110
Q ss_pred ----CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 387 ----DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 387 ----~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
...+.++|++|.+.... .| . ...+.++.|+|+.... ....+. . + ..+|.++|+|
T Consensus 114 l~~~~~d~~~id~~g~i~~~~-------s~-~--~~~~~~~~v~~~~~~~~~~~~~~---~-~-------~~~~~iiv~N 172 (226)
T 2hf9_A 114 LNLDEIDLLFIENVGNLICPA-------DF-D--LGTHKRIVVISTTEGDDTIEKHP---G-I-------MKTADLIVIN 172 (226)
T ss_dssp SCGGGCSEEEEECCSCSSGGG-------GC-C--CSCSEEEEEEEGGGCTTTTTTCH---H-H-------HTTCSEEEEE
T ss_pred HhcCCCCEEEEeCCCCccCcc-------hh-h--hccCcEEEEEecCcchhhHhhhh---h-H-------hhcCCEEEEe
Confidence 11577778877532111 11 1 1234566777754321 111110 1 1 1478999999
Q ss_pred CCCCCCcc-cchHHHHHHHHhc--CCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 462 KMDLPEAY-EKWPSFKEKLQAR--GIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 462 KiDL~~~~-e~~eel~~~l~~~--g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
|+|+.... ...+.+.+.+... .++++++||+++.|+++|+++|.+.+...
T Consensus 173 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 173 KIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp CGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred ccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 99997542 2345555555543 56899999999999999999999887653
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.31 E-value=5.4e-12 Score=129.71 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=91.4
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhcc------CCCC-CCCCceee-----------------eceeeEEE------
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAA------QPTI-ANYPFTTL-----------------LPNLGVVS------ 383 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a------k~~I-a~ypfTTl-----------------~p~lg~v~------ 383 (518)
.+.++....|+|+|.+|||||||+++|++. +..+ +..+.++. .+......
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT 128 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccc
Confidence 344555567999999999999999999842 2111 11111110 01111000
Q ss_pred --------------e-cCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcC
Q 046233 384 --------------F-DYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFS 448 (518)
Q Consensus 384 --------------~-~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~ 448 (518)
+ ..+..++|+||||+.... ....+.+|++++|+|++..+. .+.+..
T Consensus 129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~---~~~i~~------ 189 (337)
T 2qm8_A 129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDE---LQGIKK------ 189 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC---------CCT------
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCccc---HHHHHH------
Confidence 0 025689999999985421 112357899999999864322 111100
Q ss_pred CCCCCCCEEEEEeCCCCCCcccch----HHHHHHHHhc-------CCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 449 PEIAEKPYIVAFNKMDLPEAYEKW----PSFKEKLQAR-------GIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 449 ~~l~~kPiIVVlNKiDL~~~~e~~----eel~~~l~~~-------g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
.....|.++|+||+|+....... +.+...+... ..+++++||+++.|+++|++.|.+.+.
T Consensus 190 -~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 190 -GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11124668888999975432211 2222222111 357899999999999999999998776
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.30 E-value=1.2e-12 Score=145.32 Aligned_cols=158 Identities=16% Similarity=0.201 Sum_probs=109.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccCCC------C------CCC------CceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQPT------I------ANY------PFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak~~------I------a~y------pfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
|.+|+|||+..+|||||..+|+...-. + .++ ...|+......+.+. +..++|+||||+.+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~-~~~iNlIDTPGH~D- 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWE-NTKVNIIDTPGHMD- 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCS-SCBCCCEECCCSSS-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEEC-CEEEEEEECCCcHH-
Confidence 568999999999999999998632211 1 111 133444444445555 57899999999987
Q ss_pred cccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--chHHHHHHH
Q 046233 402 AHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KWPSFKEKL 479 (518)
Q Consensus 402 as~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l 479 (518)
+..+..+.++-||.+|+|||+...-..++...|....+ .+.|.|+++||+|....+- .++++.+.+
T Consensus 80 ------F~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~------~~lp~i~~INKmDr~~a~~~~~~~~i~~~l 147 (638)
T 3j25_A 80 ------FLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK------MGIPTIFFINKIDQNGIDLSTVYQDIKEKL 147 (638)
T ss_dssp ------THHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH------HTCSCEECCEECCSSSCCSHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH------cCCCeEEEEeccccccCCHHHHHHHHHHHh
Confidence 45567888889999999999998766555555544433 3588999999999864321 011111100
Q ss_pred -------------------------------------------------------------HhcCCceEEEeccCCCCHH
Q 046233 480 -------------------------------------------------------------QARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 480 -------------------------------------------------------------~~~g~~i~~ISAktgeGI~ 498 (518)
...-.|++..||+++.|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~ 227 (638)
T 3j25_A 148 SAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGID 227 (638)
T ss_dssp CCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHH
T ss_pred CCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCch
Confidence 0012478888999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
.|++.|.+.++..
T Consensus 228 ~LLd~i~~~~p~p 240 (638)
T 3j25_A 228 NLIEVITNKFYSS 240 (638)
T ss_dssp HHHHHHHHSCCCS
T ss_pred hHhhhhhccccCc
Confidence 9999999877654
No 201
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=8.3e-12 Score=132.29 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=75.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCC-------ceeeeceeeEEEecC--CceEEEEcCCCCccccccCC---Cc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYP-------FTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGF---GL 408 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~yp-------fTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~---gL 408 (518)
.+|+|||.+|||||||+++|++.......+. .++....++.+.... ...+++|||||+........ .+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 3679999999999999999998754222111 111111112211111 13689999999865321100 00
Q ss_pred c-------hhhh-------c-cccc--cCceEEEEeCC-CCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc
Q 046233 409 G-------HEFL-------R-HTER--CSALVHVIDGS-AEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE 470 (518)
Q Consensus 409 g-------~~fL-------r-~Ier--ADvlL~VVDaS-~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e 470 (518)
. ..++ + .+.. ++++||+++.+ ......+. .+...|. ...|+|+|+||+|+....+
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------~~v~iIlVinK~Dll~~~e 184 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------EKVNIIPLIAKADTLTPEE 184 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHHT------TTSEEEEEEESTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHHh------ccCcEEEEEEcccCccHHH
Confidence 0 0000 1 1223 44566666654 22222222 2334443 3689999999999986543
Q ss_pred ch---HHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 471 KW---PSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 471 ~~---eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
.. ..+.+.+...+++++.+||+++.++++++..|.+.++
T Consensus 185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 32 3455666667899999999999999998888876543
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.23 E-value=4.8e-11 Score=133.91 Aligned_cols=118 Identities=20% Similarity=0.161 Sum_probs=82.6
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccCC------CC------C------CCCceeeeceeeEEEecC------CceEEE
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQP------TI------A------NYPFTTLLPNLGVVSFDY------DSTMVV 392 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak~------~I------a------~ypfTTl~p~lg~v~~~~------~~~l~I 392 (518)
+..+.+|+|||+..+|||||..+|+...- .+ . -....|+....-.+.+.. +..+.|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 45678999999999999999999863210 11 1 112344444444444431 357999
Q ss_pred EcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC
Q 046233 393 ADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE 467 (518)
Q Consensus 393 ~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~ 467 (518)
+||||+.+ +..+..+.++-||.+|+|||+...-..++...|+..++ .+.|.++++||+|...
T Consensus 90 IDTPGHvD-------F~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVD-------FTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK------YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH------HTCCEEEEEECSSSTT
T ss_pred EeCCCCcc-------cHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEccccccC
Confidence 99999988 44567788888999999999999877776666666554 4689999999999864
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.21 E-value=4.3e-13 Score=139.51 Aligned_cols=147 Identities=16% Similarity=0.072 Sum_probs=97.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc------CCCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA------QPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLR 414 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a------k~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr 414 (518)
.+|+++|.+|||||||+|+|++. ...++.+|+||...... .+. ..+.++||||+.........+....++
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~--~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI--PLE--SGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE--ECS--TTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE--EeC--CCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 47999999999999999999986 44567899999876543 233 358999999998765444456666777
Q ss_pred cc---cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEEe
Q 046233 415 HT---ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCMS 490 (518)
Q Consensus 415 ~I---erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~IS 490 (518)
++ .+.+.++|+++.........+.. +.... ....|+++|+||+|..+..+. +...+.+++ .+..+.+.+
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~--~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIK--GGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEE--SSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred HHhcccccCceEEEEcCCceEEECCEEE----EEEcc--CCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence 66 78999999999843211111110 11111 135799999999999865443 333334433 355666666
Q ss_pred ccCCCCHH
Q 046233 491 AVKREGTH 498 (518)
Q Consensus 491 AktgeGI~ 498 (518)
+....++.
T Consensus 312 ~~~~~~~~ 319 (369)
T 3ec1_A 312 KRYAAEFP 319 (369)
T ss_dssp GGGTTTCC
T ss_pred chhhhhcc
Confidence 66555443
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.10 E-value=5.7e-11 Score=123.15 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=84.7
Q ss_pred EEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCC----------CCHHHHHHHHHHHHhcCCCC
Q 046233 382 VSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAE----------QPEFEFDAVRLELEMFSPEI 451 (518)
Q Consensus 382 v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~----------~s~e~~~~L~~eL~~~~~~l 451 (518)
+.++ ...+.||||+|+... ...|..+++.++++|||+|+++. .++.....|...+... +..
T Consensus 188 ~~~~-~~~l~iwDt~GQe~~-------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~-~~~ 258 (353)
T 1cip_A 188 FTFK-DLHFKMFDVGGQRSE-------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN-KWF 258 (353)
T ss_dssp EEET-TEEEEEEEECCSGGG-------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC-GGG
T ss_pred EeeC-CeeEEEEeCCCchhh-------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC-ccc
Confidence 3444 578999999998653 33456667889999999999984 3444444444444321 223
Q ss_pred CCCCEEEEEeCCCCCCcc----------------cchHHHHHHHH-----------hcCCceEEEeccCCCCHHHHHHHH
Q 046233 452 AEKPYIVAFNKMDLPEAY----------------EKWPSFKEKLQ-----------ARGIEPFCMSAVKREGTHEVISAA 504 (518)
Q Consensus 452 ~~kPiIVVlNKiDL~~~~----------------e~~eel~~~l~-----------~~g~~i~~ISAktgeGI~eL~~~L 504 (518)
.+.|+|||+||+|+.... ...++..+.+. ...+.+++|||+++.||+++|.++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 578999999999995321 12344444443 245688999999999999999999
Q ss_pred HHHHHhh
Q 046233 505 YQLLQKN 511 (518)
Q Consensus 505 ~e~L~~~ 511 (518)
.+.+...
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887543
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.10 E-value=1.3e-12 Score=135.96 Aligned_cols=142 Identities=18% Similarity=0.135 Sum_probs=87.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC-------CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccccccCCCcchhhh
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ-------PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHQGFGLGHEFL 413 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak-------~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGliegas~~~gLg~~fL 413 (518)
.+|+++|.+|||||||+|+|++.. ..++.+|+||...... .+. ..+.++||||+.........+....+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~--~~~--~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI--PLD--EESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE--ESS--SSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE--Eec--CCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 479999999999999999999862 2357889999876543 333 34899999999875433334555555
Q ss_pred cc---ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHHHHHh-cCCceEEE
Q 046233 414 RH---TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKEKLQA-RGIEPFCM 489 (518)
Q Consensus 414 r~---IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~~l~~-~g~~i~~I 489 (518)
++ ....+.++|++|.........+.. ...|. ....|+++|+||+|..+..+ .+...+.+++ .+..+.+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~-----~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS-----GGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE-----SSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSS
T ss_pred HHhccccccCceEEEEcCCCEEEEcceEE-EEEec-----CCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCC
Confidence 54 467889999999843211111110 01111 13579999999999986544 3444444443 35555555
Q ss_pred eccC
Q 046233 490 SAVK 493 (518)
Q Consensus 490 SAkt 493 (518)
++..
T Consensus 310 ~~~~ 313 (368)
T 3h2y_A 310 TPEE 313 (368)
T ss_dssp CHHH
T ss_pred chhh
Confidence 5543
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.05 E-value=4.9e-10 Score=115.79 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=79.6
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCC----------CCCCHHHHHHHHHHHHhcCCCCCCCCE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGS----------AEQPEFEFDAVRLELEMFSPEIAEKPY 456 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS----------~~~s~e~~~~L~~eL~~~~~~l~~kPi 456 (518)
...+.||||+|+.. ....|..+++.++++|||+|++ +..++.....++..+.. .+...+.|+
T Consensus 160 ~v~l~iwDtaGQe~-------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~-~~~~~~~pi 231 (340)
T 4fid_A 160 DIPFHLIDVGGQRS-------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT-NEFLKGAVK 231 (340)
T ss_dssp SCEEEEEECCSCHH-------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH-CGGGTTSEE
T ss_pred eeeeccccCCCccc-------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh-hhccCCCeE
Confidence 46899999999865 2334666678899999999998 44555554444444332 223457899
Q ss_pred EEEEeCCCCCCcc----------------cchHHHHHHHHh---------------------------cCCceEEEeccC
Q 046233 457 IVAFNKMDLPEAY----------------EKWPSFKEKLQA---------------------------RGIEPFCMSAVK 493 (518)
Q Consensus 457 IVVlNKiDL~~~~----------------e~~eel~~~l~~---------------------------~g~~i~~ISAkt 493 (518)
|||+||+|+.... ...++..+++.. ..+.++++||+.
T Consensus 232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d 311 (340)
T 4fid_A 232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD 311 (340)
T ss_dssp EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence 9999999986421 012222222211 235678999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q 046233 494 REGTHEVISAAYQLLQK 510 (518)
Q Consensus 494 geGI~eL~~~L~e~L~~ 510 (518)
..||+.+|..+.+.+-.
T Consensus 312 t~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 312 GSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.04 E-value=2.1e-10 Score=115.70 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=74.1
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
..+.+||| +.+... +.. .+++.+|++|+|+|++++. ++..+..|..+++. .++|++||+||+||.
T Consensus 63 ~~~~iwD~--qer~~~----l~~---~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 63 GSGVIENV--LHRKNL----LTK---PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLY 128 (301)
T ss_dssp SSEEEEEE--CCCSCE----ETT---TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGC
T ss_pred CeEEEEEE--ccccce----eec---cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcC
Confidence 47999999 433222 333 3466799999999999887 56666666555543 368999999999997
Q ss_pred CcccchHHHHHHHHhcC--CceEEEeccCCCCHHHHHHHHH
Q 046233 467 EAYEKWPSFKEKLQARG--IEPFCMSAVKREGTHEVISAAY 505 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g--~~i~~ISAktgeGI~eL~~~L~ 505 (518)
..... ++..+.+.... +++++|||+++.||+++|.++.
T Consensus 129 ~~~~v-~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 129 DEDDL-RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CHHHH-HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CchhH-HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 65331 23333333334 7999999999999999998875
No 208
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.00 E-value=2.9e-10 Score=118.21 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=80.2
Q ss_pred EEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhcCCCC
Q 046233 382 VSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMFSPEI 451 (518)
Q Consensus 382 v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~~~~l 451 (518)
+.+. ...+.||||+|+... ...|..+++.++++|||+|+++ ..++.....+...+... ...
T Consensus 196 ~~~~-~~~l~i~Dt~Gq~~~-------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~-~~~ 266 (362)
T 1zcb_A 196 FEIK-NVPFKMVDVGGQRSE-------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVF 266 (362)
T ss_dssp EEET-TEEEEEEEECC--------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGG
T ss_pred eeeC-CeEEEEEeccchhhh-------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc-hhh
Confidence 4444 578999999998552 2345556778999999999998 44555555454444321 123
Q ss_pred CCCCEEEEEeCCCCCCcc-----------------cchHHHHHHH--------H---hcCCceEEEeccCCCCHHHHHHH
Q 046233 452 AEKPYIVAFNKMDLPEAY-----------------EKWPSFKEKL--------Q---ARGIEPFCMSAVKREGTHEVISA 503 (518)
Q Consensus 452 ~~kPiIVVlNKiDL~~~~-----------------e~~eel~~~l--------~---~~g~~i~~ISAktgeGI~eL~~~ 503 (518)
.+.|+|||+||+||.... ...++..+++ . ...+.+++|||+++.||+++|.+
T Consensus 267 ~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 267 SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 578999999999986321 1233444333 1 23567899999999999999999
Q ss_pred HHHHHHhh
Q 046233 504 AYQLLQKN 511 (518)
Q Consensus 504 L~e~L~~~ 511 (518)
+.+.+...
T Consensus 347 v~~~i~~~ 354 (362)
T 1zcb_A 347 VKDTILHD 354 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887543
No 209
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.93 E-value=2e-09 Score=113.57 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=84.1
Q ss_pred EEecCCceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCC----------CCCHHHHHHHHHHHHhcCCCC
Q 046233 382 VSFDYDSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSA----------EQPEFEFDAVRLELEMFSPEI 451 (518)
Q Consensus 382 v~~~~~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~----------~~s~e~~~~L~~eL~~~~~~l 451 (518)
+.+. ...+.||||+|+.... ..|..+++.++++|||+|+++ ..++.....|...+... ...
T Consensus 212 ~~~~-~v~l~iwDtaGQe~~r-------~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~-~~~ 282 (402)
T 1azs_C 212 FQVD-KVNFHMFDVGGQRDER-------RKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-RWL 282 (402)
T ss_dssp EEET-TEEEEEEEECCSGGGG-------GGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-TTC
T ss_pred eecC-Cccceecccchhhhhh-------hhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc-ccC
Confidence 3444 5789999999986532 335556778999999999998 66666666665555432 224
Q ss_pred CCCCEEEEEeCCCCCCccc---c----------------------------hHHHHHHH-----Hh--------cCCceE
Q 046233 452 AEKPYIVAFNKMDLPEAYE---K----------------------------WPSFKEKL-----QA--------RGIEPF 487 (518)
Q Consensus 452 ~~kPiIVVlNKiDL~~~~e---~----------------------------~eel~~~l-----~~--------~g~~i~ 487 (518)
.+.|+|||+||+||..... . .++...++ .. ..+.++
T Consensus 283 ~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~ 362 (402)
T 1azs_C 283 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH 362 (402)
T ss_dssp SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEE
T ss_pred CCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEE
Confidence 5789999999999853211 0 12222221 11 245677
Q ss_pred EEeccCCCCHHHHHHHHHHHHHhhh
Q 046233 488 CMSAVKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 488 ~ISAktgeGI~eL~~~L~e~L~~~~ 512 (518)
++||+++.||+++|.++.+.+....
T Consensus 363 ~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 363 FTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876543
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.86 E-value=1.5e-09 Score=112.48 Aligned_cols=117 Identities=13% Similarity=0.133 Sum_probs=78.4
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCC----------CCCCHHHHHHHHHHHHhcCCCCCCCCE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGS----------AEQPEFEFDAVRLELEMFSPEIAEKPY 456 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS----------~~~s~e~~~~L~~eL~~~~~~l~~kPi 456 (518)
...+.||||+|+.... ..+..+++.++++|+|+|++ +..++.....+...+... ....+.|+
T Consensus 182 ~v~l~iwDtaGQe~~r-------~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~-~~~~~~pi 253 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNER-------RKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ-PCFEKTSF 253 (354)
T ss_dssp --EEEEEEECCSTTGG-------GGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC-GGGSSCEE
T ss_pred ceeeEEEECCCchhhh-------HHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc-cccCCCeE
Confidence 3679999999986532 33555677899999999998 555665555555544321 12357899
Q ss_pred EEEEeCCCCCCccc----------------------chHHHHHHHHh----------------cCCceEEEeccCCCCHH
Q 046233 457 IVAFNKMDLPEAYE----------------------KWPSFKEKLQA----------------RGIEPFCMSAVKREGTH 498 (518)
Q Consensus 457 IVVlNKiDL~~~~e----------------------~~eel~~~l~~----------------~g~~i~~ISAktgeGI~ 498 (518)
|||+||+||..... ..++..+++.. ..+.+++|||+++.||+
T Consensus 254 iLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~ 333 (354)
T 2xtz_A 254 MLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK 333 (354)
T ss_dssp EEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHH
T ss_pred EEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHH
Confidence 99999999853211 01222222221 12346899999999999
Q ss_pred HHHHHHHHHHHhh
Q 046233 499 EVISAAYQLLQKN 511 (518)
Q Consensus 499 eL~~~L~e~L~~~ 511 (518)
++|.++.+.+...
T Consensus 334 ~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 334 KTFKLVDETLRRR 346 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887543
No 211
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.80 E-value=2.9e-09 Score=109.41 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=79.7
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCC----------CCCCHHHHHHHHHHHHhcCCCCCCCCE
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGS----------AEQPEFEFDAVRLELEMFSPEIAEKPY 456 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS----------~~~s~e~~~~L~~eL~~~~~~l~~kPi 456 (518)
...+.+|||+|+.... ..|..+++.++++|||+|++ +.+++.....+...+.. .+...+.|+
T Consensus 166 ~v~l~iwDtgGQe~~R-------~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~-~~~~~~~~i 237 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSER-------RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT-YPWFQNSSV 237 (327)
T ss_dssp TEEEEEEEECCSHHHH-------TTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT-SGGGTTCEE
T ss_pred ceeeEEEEcCCchhHH-------HHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh-hhccCCceE
Confidence 5789999999986532 33556678899999999776 33444444333333321 123457899
Q ss_pred EEEEeCCCCCCcc-----------------cchHHHHHHHH----------hcCCceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 457 IVAFNKMDLPEAY-----------------EKWPSFKEKLQ----------ARGIEPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 457 IVVlNKiDL~~~~-----------------e~~eel~~~l~----------~~g~~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
++++||+|+.... ...++..+++. ...+.++++||+++.||+.+|..+.+.+.
T Consensus 238 iL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 238 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp EEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 9999999986422 12333443332 23567789999999999999999998876
Q ss_pred hh
Q 046233 510 KN 511 (518)
Q Consensus 510 ~~ 511 (518)
+.
T Consensus 318 ~~ 319 (327)
T 3ohm_A 318 QL 319 (327)
T ss_dssp HT
T ss_pred HH
Confidence 53
No 212
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.76 E-value=9.8e-09 Score=99.75 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=71.4
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCC--CCCCCEEEEEeCC-CCCCcccchHHHHHHHHh---
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPE--IAEKPYIVAFNKM-DLPEAYEKWPSFKEKLQA--- 481 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~--l~~kPiIVVlNKi-DL~~~~e~~eel~~~l~~--- 481 (518)
+...|-.+++.+|++|||||+++....+....+.......... +.+.|++|.+||. |++.+.. ..++.+.+..
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams-~~EI~e~L~L~~l 193 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNLL 193 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-HHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-HHHHHHHcCCcCC
Confidence 4444555678899999999999876544333332212233332 4688999999995 7876543 3455555432
Q ss_pred -cCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 482 -RGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 482 -~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+.|.+.+|||++|+||.+-++||.+.+...
T Consensus 194 ~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 194 NHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 468899999999999999999999877544
No 213
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.75 E-value=1.4e-08 Score=102.62 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred cccccCceEEEEeCCCCC-CHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--chHHHHHHHHhcCCceEEEec
Q 046233 415 HTERCSALVHVIDGSAEQ-PEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KWPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~-s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l~~~g~~i~~ISA 491 (518)
.++.+|++|+|+|++++. ++..+..|..++.. .++|++||+||+||....+ ..+++.+.+...+++++++||
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSA 150 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEEC
Confidence 467799999999999875 66655555555442 4689999999999986532 134555666666889999999
Q ss_pred cCCCCHHHHHHHHH
Q 046233 492 VKREGTHEVISAAY 505 (518)
Q Consensus 492 ktgeGI~eL~~~L~ 505 (518)
+++.|+++|+..+.
T Consensus 151 ~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 151 KTGEGIDELVDYLE 164 (302)
T ss_dssp TTCTTHHHHHHHTT
T ss_pred CCCCCHHHHHhhcc
Confidence 99999999998764
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.71 E-value=1.5e-08 Score=101.64 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=75.5
Q ss_pred EEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccc
Q 046233 392 VADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEK 471 (518)
Q Consensus 392 I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~ 471 (518)
|-..||+...+ ..+++++++++|++++|+|+.++.+.... .+...+ .++|.++|+||+||.... .
T Consensus 3 i~w~PGhm~ka------~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-~l~~~l-------~~kp~ilVlNK~DL~~~~-~ 67 (282)
T 1puj_A 3 IQWFPGHMAKA------RREVTEKLKLIDIVYELVDARIPMSSRNP-MIEDIL-------KNKPRIMLLNKADKADAA-V 67 (282)
T ss_dssp ------CTTHH------HHHHHHHGGGCSEEEEEEETTSTTTTSCH-HHHHHC-------SSSCEEEEEECGGGSCHH-H
T ss_pred CcCCchHHHHH------HHHHHHHHhhCCEEEEEEeCCCCCccCCH-HHHHHH-------CCCCEEEEEECcccCCHH-H
Confidence 45689986533 35788899999999999999987654321 122222 479999999999998642 3
Q ss_pred hHHHHHHHHhcCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 472 WPSFKEKLQARGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 472 ~eel~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
.+.+.+.++..+++++++||+++.|+++|++.|.+.+...
T Consensus 68 ~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 68 TQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 4455666666678999999999999999999999888754
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.66 E-value=1.6e-08 Score=107.28 Aligned_cols=152 Identities=13% Similarity=0.132 Sum_probs=80.1
Q ss_pred hhhhhheec--eeeeeeCCCCCChhHHHHHHhccCCC---CCC-CCceeeeceeeEEEecCC--ceEEEEcCCCCccccc
Q 046233 332 WLELELKLV--ADVGIVGAPNAGKSTLLSVISAAQPT---IAN-YPFTTLLPNLGVVSFDYD--STMVVADLPGLLEGAH 403 (518)
Q Consensus 332 ~l~lELK~i--a~V~LVG~pNAGKSTLLn~Ls~ak~~---Ia~-ypfTTl~p~lg~v~~~~~--~~l~I~DTPGliegas 403 (518)
.+.+.++.- +.|+|||.+|||||||++.|++.... +.. .+..+.. .++.+.-... ..++++|++|+.....
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~ltv~D~~~~g~~~~ 110 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKLTIVSTVGFGDQIN 110 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEEEEEEEECCCC-CC
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCccccccchhhhhhhhhccc
Confidence 344555443 45999999999999999999986421 111 1223332 3333332222 2689999999864211
Q ss_pred cCC-------Ccchh---hhc----------cccccC---ceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEE
Q 046233 404 QGF-------GLGHE---FLR----------HTERCS---ALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAF 460 (518)
Q Consensus 404 ~~~-------gLg~~---fLr----------~IerAD---vlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVl 460 (518)
... .+... ++. .+..++ +++||+|+.......++..+ ..| . ...|+|+|+
T Consensus 111 ~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieil-k~L---~---~~~~vI~Vi 183 (427)
T 2qag_B 111 KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTM-KKL---D---SKVNIIPII 183 (427)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHH-HHT---C---SCSEEEEEE
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHH-HHH---h---hCCCEEEEE
Confidence 000 00011 111 112233 46677777765555554322 222 2 468999999
Q ss_pred eCCCCCCcccc---hHHHHHHHHhcCCceEEEec
Q 046233 461 NKMDLPEAYEK---WPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 461 NKiDL~~~~e~---~eel~~~l~~~g~~i~~ISA 491 (518)
||+|.....+. ...+.+.+...++++|.+|.
T Consensus 184 ~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 184 AKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred cchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 99999865442 12333334445777777774
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.65 E-value=9e-08 Score=101.26 Aligned_cols=156 Identities=15% Similarity=0.144 Sum_probs=90.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC----CCC-CCCceeeeceeeEEE-ecCCceEEEEcCCCCccccccCCCcchhhhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP----TIA-NYPFTTLLPNLGVVS-FDYDSTMVVADLPGLLEGAHQGFGLGHEFLRH 415 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~----~Ia-~ypfTTl~p~lg~v~-~~~~~~l~I~DTPGliegas~~~gLg~~fLr~ 415 (518)
.|+|+|.+|||||||+|.|++... .+. ...-+|.. +.+. ......++++|+||+... ......++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~---~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~ 143 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME---RHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEK 143 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC---CEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee---EEeccccccCCeeehHhhcccch----HHHHHHHHHH
Confidence 799999999999999999998432 111 11111211 2222 221236899999997532 1122334433
Q ss_pred --ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCC------------cccchHHHHHHH--
Q 046233 416 --TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPE------------AYEKWPSFKEKL-- 479 (518)
Q Consensus 416 --IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~------------~~e~~eel~~~l-- 479 (518)
+...+..++ ++.... ...... +...|.. ..+|+++|+||.|+.- .....+.+.+..
T Consensus 144 ~~L~~~~~~~~-lS~G~~-~kqrv~-la~aL~~-----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 144 MKFYEYDFFII-ISATRF-KKNDID-IAKAISM-----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp TTGGGCSEEEE-EESSCC-CHHHHH-HHHHHHH-----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred cCCCccCCeEE-eCCCCc-cHHHHH-HHHHHHh-----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 333344444 665431 222333 3344442 3589999999999751 112222333332
Q ss_pred --HhcC---CceEEEec--cCCCCHHHHHHHHHHHHHhhh
Q 046233 480 --QARG---IEPFCMSA--VKREGTHEVISAAYQLLQKNK 512 (518)
Q Consensus 480 --~~~g---~~i~~ISA--ktgeGI~eL~~~L~e~L~~~~ 512 (518)
...+ ..++.+|+ ..+.|+++|.+.|.+.++...
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 2222 36899999 677789999999998887654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.64 E-value=9.5e-09 Score=111.27 Aligned_cols=153 Identities=17% Similarity=0.133 Sum_probs=86.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHh------ccCCCC-CC--CCcee--------eeceeeEEE-----------------ec
Q 046233 340 VADVGIVGAPNAGKSTLLSVIS------AAQPTI-AN--YPFTT--------LLPNLGVVS-----------------FD 385 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls------~ak~~I-a~--ypfTT--------l~p~lg~v~-----------------~~ 385 (518)
...|+|+|.+||||||++++|. +.++.+ +. +...+ ....+.++. +.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999999998 333221 11 00000 000011111 00
Q ss_pred -CCceEEEEcCCCCccccccCCCcchhhhc--cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCE-EEEEe
Q 046233 386 -YDSTMVVADLPGLLEGAHQGFGLGHEFLR--HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPY-IVAFN 461 (518)
Q Consensus 386 -~~~~l~I~DTPGliegas~~~gLg~~fLr--~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPi-IVVlN 461 (518)
.+..++|+||||...... .+...+.+ .+..+|.+++|+|+..... .+..+ ..+.. ..|+ +||+|
T Consensus 181 ~~~~DvvIIDTpG~~~~~~---~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a-~~~~~------~~~i~gvVlN 248 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQED---SLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQA-KAFKD------KVDVASVIVT 248 (504)
T ss_dssp HTTCCEEEEEECCCCTTCH---HHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHH-HHHHH------HHCCCCEEEE
T ss_pred HCCCcEEEEeCCCCcccch---hHHHHHHHHHhhhcCceEEEEEecccccc--HHHHH-HHHHh------hcCceEEEEe
Confidence 246799999999864211 11111111 1226899999999987533 22222 22221 1564 89999
Q ss_pred CCCCCCcccchHHHHHHHHhcCCc------------------eEEEeccCCCC-HHHHHHHHHHH
Q 046233 462 KMDLPEAYEKWPSFKEKLQARGIE------------------PFCMSAVKREG-THEVISAAYQL 507 (518)
Q Consensus 462 KiDL~~~~e~~eel~~~l~~~g~~------------------i~~ISAktgeG-I~eL~~~L~e~ 507 (518)
|+|..........+.. ..+.+ .+++||+.|.| +.+|++++.+.
T Consensus 249 K~D~~~~~g~~l~~~~---~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGGALSAVA---ATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTHHHHHHH---HHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHHHHHHHH---HhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9998754332222222 22222 34579999999 99999999866
No 218
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.58 E-value=5e-08 Score=98.85 Aligned_cols=103 Identities=12% Similarity=0.013 Sum_probs=71.8
Q ss_pred cchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCC--CCCCCEEEEEeC-CCCCCcccchHHHHHHHHh---
Q 046233 408 LGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPE--IAEKPYIVAFNK-MDLPEAYEKWPSFKEKLQA--- 481 (518)
Q Consensus 408 Lg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~--l~~kPiIVVlNK-iDL~~~~e~~eel~~~l~~--- 481 (518)
+...|-.+++.+|++|||||+++.+..+..+.+.+........ +.+.|++|.+|| .|++.+.. ..++.+.+..
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams-~~EI~e~L~L~~l 278 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP-CFYLAHELHLNLL 278 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-HHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-HHHHHHHcCCccC
Confidence 4445556678899999999999977654333332111222221 367899999996 68876543 3455555432
Q ss_pred -cCCceEEEeccCCCCHHHHHHHHHHHHHhh
Q 046233 482 -RGIEPFCMSAVKREGTHEVISAAYQLLQKN 511 (518)
Q Consensus 482 -~g~~i~~ISAktgeGI~eL~~~L~e~L~~~ 511 (518)
+.|.+.+|||++|+|+.+-++||.+.+...
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 367899999999999999999999887654
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.57 E-value=1.2e-07 Score=94.41 Aligned_cols=141 Identities=21% Similarity=0.255 Sum_probs=78.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCC-C-------CCCceeeeceeeEEEecC--CceEEEEcCCCCccccccCCC---
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTI-A-------NYPFTTLLPNLGVVSFDY--DSTMVVADLPGLLEGAHQGFG--- 407 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~I-a-------~ypfTTl~p~lg~v~~~~--~~~l~I~DTPGliegas~~~g--- 407 (518)
..|+|||.+|||||||++.|++..... + +.+.++....++.+.-.. ...++++|+||+.........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 478999999999999999999764321 1 111122222233322111 237899999998543221100
Q ss_pred c----chhhhc--------------cccccCceEEEEeCC-CCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 408 L----GHEFLR--------------HTERCSALVHVIDGS-AEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 408 L----g~~fLr--------------~IerADvlL~VVDaS-~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
+ ...+.. .+.+++++++++|.. .+....+... ..+|. ...++|+|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~-l~~L~------~~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEF-MKHLS------KVVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHH-HHHHH------TTSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHH-HHHHH------hcCcEEEEEeccccCCH
Confidence 0 001110 135678899999965 3444444433 33444 12799999999999865
Q ss_pred ccc---hHHHHHHHHhcCCceEE
Q 046233 469 YEK---WPSFKEKLQARGIEPFC 488 (518)
Q Consensus 469 ~e~---~eel~~~l~~~g~~i~~ 488 (518)
.+. ...+++.+...++.+++
T Consensus 156 ~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 EEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHcCccccC
Confidence 432 23444555556666654
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.38 E-value=2.6e-07 Score=95.94 Aligned_cols=90 Identities=21% Similarity=0.178 Sum_probs=63.1
Q ss_pred hhhcccc-ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHH----HHHHhcCC-
Q 046233 411 EFLRHTE-RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFK----EKLQARGI- 484 (518)
Q Consensus 411 ~fLr~Ie-rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~----~~l~~~g~- 484 (518)
.+++++. .++++|+|+|++++. ..|..+|..+. .++|+++|+||+||.......+.+. ..++..++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 4555554 466999999998732 23444444442 3789999999999976543222332 33445566
Q ss_pred --ceEEEeccCCCCHHHHHHHHHHHH
Q 046233 485 --EPFCMSAVKREGTHEVISAAYQLL 508 (518)
Q Consensus 485 --~i~~ISAktgeGI~eL~~~L~e~L 508 (518)
+++.+||+++.|+++|+++|.++.
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 799999999999999999998765
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.37 E-value=2.6e-07 Score=95.95 Aligned_cols=91 Identities=23% Similarity=0.277 Sum_probs=64.5
Q ss_pred hhhccc-cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHHHHH----HHHhcCC-
Q 046233 411 EFLRHT-ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPSFKE----KLQARGI- 484 (518)
Q Consensus 411 ~fLr~I-erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~eel~~----~l~~~g~- 484 (518)
.+++++ ++++++|+|+|++++.. .+..++..+ +.++|+++|+||+||.......+.+.+ .+...++
T Consensus 63 ~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~---l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~ 134 (369)
T 3ec1_A 63 SMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF---AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLC 134 (369)
T ss_dssp HHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH---CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH---hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCC
Confidence 456665 77899999999998653 122233332 237899999999999865332223333 3444565
Q ss_pred --ceEEEeccCCCCHHHHHHHHHHHHH
Q 046233 485 --EPFCMSAVKREGTHEVISAAYQLLQ 509 (518)
Q Consensus 485 --~i~~ISAktgeGI~eL~~~L~e~L~ 509 (518)
+++.+||+++.|+++|++.|.+++.
T Consensus 135 ~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 135 PVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp CSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 7899999999999999999987653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.35 E-value=3e-07 Score=92.15 Aligned_cols=57 Identities=28% Similarity=0.399 Sum_probs=37.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC-CCCCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ-PTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak-~~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
.+|+++|.||||||||+|+|++.. ..+++.|++|..... +..+ ..+.++||||+...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~--~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVG--KELELLDTPGILWP 178 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEET--TTEEEEECCCCCCS
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEeC--CCEEEEECcCcCCC
Confidence 479999999999999999999876 456888999987652 3333 47999999999764
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.35 E-value=4.2e-07 Score=100.17 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=48.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe------cCCceEEEEcCCCCccc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF------DYDSTMVVADLPGLLEG 401 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~------~~~~~l~I~DTPGlieg 401 (518)
.+..|+|||.||||||||+|+|++....+ .++++|...+.+++.+ ..+..+.|+||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 35689999999999999999999986544 6677776666666543 23568999999999753
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.25 E-value=2.9e-07 Score=97.80 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=82.7
Q ss_pred eeeeeCCCCCChhHHHHHHhcc------CCCC-CCCCc------------------------eeeece-e---eEEEecC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA------QPTI-ANYPF------------------------TTLLPN-L---GVVSFDY 386 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a------k~~I-a~ypf------------------------TTl~p~-l---g~v~~~~ 386 (518)
.|+++|.+||||||+++.|... ++.+ ..-++ ++.+|. + ....+ .
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~-~ 179 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF-K 179 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT-S
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh-h
Confidence 6899999999999999999763 1111 00000 222221 0 00011 2
Q ss_pred CceEEEEcCCCCccccccCCCcchhh--hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCC-C-EEEEEeC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEF--LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEK-P-YIVAFNK 462 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~f--Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~k-P-iIVVlNK 462 (518)
...+.|+||||....... +.... +..+..+|.+++|+|+.... .... .+..+.. .. | ..+|+||
T Consensus 180 ~~D~vIIDT~G~~~~~~~---l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~----~~~~~~~---~~~~i~gvVlnK 247 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKG---LLEEMKQIKEITNPDEIILVIDGTIGQ--QAGI----QAKAFKE---AVGEIGSIIVTK 247 (432)
T ss_dssp SCSEEEEECCCSCSSHHH---HHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHH----HHHHHHT---TSCSCEEEEEEC
T ss_pred CCCEEEEcCCCCccccHH---HHHHHHHHHHHhcCcceeEEeeccccH--HHHH----HHHHHhh---cccCCeEEEEeC
Confidence 457999999997642110 11111 22334689999999987642 2222 1222322 24 5 8899999
Q ss_pred CCCCCcccchHHHHHHHHhcCCceE------------------EEeccCCCC-HHHHHHHHHHHH
Q 046233 463 MDLPEAYEKWPSFKEKLQARGIEPF------------------CMSAVKREG-THEVISAAYQLL 508 (518)
Q Consensus 463 iDL~~~~e~~eel~~~l~~~g~~i~------------------~ISAktgeG-I~eL~~~L~e~L 508 (518)
+|...... .........+.++. ++||..|.| +..|++.+.+.+
T Consensus 248 ~D~~~~~g---~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~ 309 (432)
T 2v3c_C 248 LDGSAKGG---GALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV 309 (432)
T ss_dssp SSSCSTTH---HHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS
T ss_pred CCCccchH---HHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 99864322 22233343444443 346777777 666666554443
No 225
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.23 E-value=3.3e-07 Score=90.92 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=66.4
Q ss_pred CCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCcccchHH
Q 046233 395 LPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYEKWPS 474 (518)
Q Consensus 395 TPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e~~ee 474 (518)
.||+...+ ..+++++++++|++|+|+|+.++.+.... .+. + + ++|.++|+||+||.... ..+.
T Consensus 4 ~PGhm~ka------~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-l---l-~k~~iivlNK~DL~~~~-~~~~ 66 (262)
T 3cnl_A 4 YPGHIEKA------KRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-F---S-RKETIILLNKVDIADEK-TTKK 66 (262)
T ss_dssp -----CCT------THHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-C---T-TSEEEEEEECGGGSCHH-HHHH
T ss_pred CchHHHHH------HHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-h---c-CCCcEEEEECccCCCHH-HHHH
Confidence 47765432 35678889999999999999987554321 111 1 2 78999999999998653 2445
Q ss_pred HHHHHHhcCCceEEEeccCCCCHHHHHHHHHH
Q 046233 475 FKEKLQARGIEPFCMSAVKREGTHEVISAAYQ 506 (518)
Q Consensus 475 l~~~l~~~g~~i~~ISAktgeGI~eL~~~L~e 506 (518)
+.+.++..+.++ .+||+++.|+++|++.|.+
T Consensus 67 ~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 67 WVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 566676667888 9999999999999887754
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=1.4e-06 Score=86.38 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=38.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC-CCCCCCceeeeceeeEEEecCCceEEEEcCCCCccc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP-TIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEG 401 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypfTTl~p~lg~v~~~~~~~l~I~DTPGlieg 401 (518)
.+|+++|.||||||||+|+|++... .++..+++|.... .+.. ...+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~--~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL--ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC--TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe--CCCEEEEECCCcccC
Confidence 5899999999999999999998765 4567777777553 2333 357899999998764
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.06 E-value=6.7e-06 Score=87.66 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=54.0
Q ss_pred ceEEEEcCCCCccccccCCCcchhh--hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEF--LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~f--Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
..+.|+||||...... .+.... +..+..+|.+++|+|+..... ..... ..+. . .-.+..||+||+|.
T Consensus 183 ~DvVIIDTaGrl~~d~---~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a-~~f~---~--~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDK---ALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQA-LAFK---E--ATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHH-HHHH---H--SCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccchH---HHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHH-HHHH---h--hCCCeEEEEECCCC
Confidence 5799999999643111 111111 122345799999999986422 22222 2222 1 12456799999998
Q ss_pred CCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 466 PEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 466 ~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
..... .+.......+.|+.+++. |+++
T Consensus 252 ~~~gG---~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 252 SAKGG---GALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp CSSHH---HHHHHHHTTCCCEEEEEC--SSST
T ss_pred ccccc---HHHHHHHHHCCCEEEEEc--CCCh
Confidence 65432 233444556788888876 5444
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.79 E-value=6.4e-05 Score=82.93 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=22.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhccC
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++.|+|||.+|||||||++.|++..
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 4579999999999999999999863
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.74 E-value=8.2e-06 Score=83.02 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=62.0
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc---chHHHHHHHHhcCCceEEEec
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE---KWPSFKEKLQARGIEPFCMSA 491 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e---~~eel~~~l~~~g~~i~~ISA 491 (518)
.+.++|.+++|+|+..+..... .+...|.... ..++|.+||+||+||....+ .++.+.+.+...+.+++.+||
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~--~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa 158 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA--LLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS 158 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH--HHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH--HHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEec
Confidence 3678999999999987655433 3344443211 14689999999999986533 245666777667889999999
Q ss_pred cCCCCHHHHHHHH
Q 046233 492 VKREGTHEVISAA 504 (518)
Q Consensus 492 ktgeGI~eL~~~L 504 (518)
+++.|+++|+..+
T Consensus 159 ~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 159 KDQDSLADIIPHF 171 (307)
T ss_dssp HHHTTCTTTGGGG
T ss_pred CCCCCHHHHHhhc
Confidence 9999988876543
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.71 E-value=3.8e-05 Score=81.69 Aligned_cols=97 Identities=19% Similarity=0.135 Sum_probs=53.6
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhc--cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLR--HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr--~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
+..+.|+||||..... ....+..+... .....+.+++|+|+..... ... +...+.. .-.+..||+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~--a~~-~a~~f~~-----~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVLKPDDVILVIDASIGQK--AYD-LASRFHQ-----ASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--GHH-HHHHHHH-----HCSSEEEEEECGG
T ss_pred CCCEEEEECCCCcccc-CCHHHHHHHHHHHHhhCCcceEEEEeCccchH--HHH-HHHHHhc-----ccCCcEEEEeccc
Confidence 3578999999963300 11112122111 1224689999999986422 122 2222221 1246789999999
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEeccCCCCH
Q 046233 465 LPEAYEKWPSFKEKLQARGIEPFCMSAVKREGT 497 (518)
Q Consensus 465 L~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI 497 (518)
..... ..........+.|+.+++. |+++
T Consensus 250 ~~a~~---G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 250 GTAKG---GGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp GCSCH---HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ccccc---hHHHHHHHHHCCCEEEEEC--CCCh
Confidence 86432 2333444455788888886 6555
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.68 E-value=0.0001 Score=74.24 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=55.9
Q ss_pred CceEEEEcCCCCcc--ccccCCCcchhh--hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCC-EEEEEe
Q 046233 387 DSTMVVADLPGLLE--GAHQGFGLGHEF--LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKP-YIVAFN 461 (518)
Q Consensus 387 ~~~l~I~DTPGlie--gas~~~gLg~~f--Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kP-iIVVlN 461 (518)
...+.|+||||... ... .+.... +..+..+|.+++|+|+... ...+..+ ..+. . ..| ..+|+|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~---~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~-~~~~---~---~~~i~gvVln 247 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEA---ALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLA-SKFN---Q---ASKIGTIIIT 247 (297)
T ss_dssp TCSEEEEECCCSCCTTCHH---HHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHH-HHHH---H---TCTTEEEEEE
T ss_pred CCCEEEEeCCCCcccccHH---HHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHH-HHHH---h---hCCCCEEEEe
Confidence 45799999999754 110 011100 1223468999999998742 2222222 2222 1 245 788999
Q ss_pred CCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHH
Q 046233 462 KMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 462 KiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL 500 (518)
|+|.... ...+.......+.++..++ .|+++++|
T Consensus 248 k~D~~~~---~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 248 KMDGTAK---GGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp CGGGCTT---HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred CCCCCcc---hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 9997543 2233445555678888876 56666543
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.44 E-value=0.00032 Score=72.84 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=56.7
Q ss_pred ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCccc--chHHHHHHHHhcCCceEEEeccC
Q 046233 416 TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEAYE--KWPSFKEKLQARGIEPFCMSAVK 493 (518)
Q Consensus 416 IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~~e--~~eel~~~l~~~g~~i~~ISAkt 493 (518)
++++|.+++|.. ..+.+... .+...|.... ..++|.+||+||+||..... .++.+...+...+++++.+||++
T Consensus 128 ~anvD~v~iv~a-~~P~~~~~--~i~r~L~~a~--~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 128 AANIDQIVIVSA-ILPELSLN--IIDRYLVGCE--TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EECCCEEEEEEE-STTTCCHH--HHHHHHHHHH--HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HhcCCEEEEEEe-CCCCCCHH--HHHHHHHHHH--hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 577899997754 44443222 3333332110 13578899999999986543 13445566667789999999999
Q ss_pred CCCHHHHHHHH
Q 046233 494 REGTHEVISAA 504 (518)
Q Consensus 494 geGI~eL~~~L 504 (518)
+.|+++|...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999987654
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.32 E-value=0.00015 Score=77.50 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=44.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhcc---------------CCCCCCCCceeeeceeeEEEecC----------CceEEEE
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAA---------------QPTIANYPFTTLLPNLGVVSFDY----------DSTMVVA 393 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~a---------------k~~Ia~ypfTTl~p~lg~v~~~~----------~~~l~I~ 393 (518)
.+.-|+|+|.+++|||||||+|.+. +..+-....||...+.|++.+.. ...+.++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 3567999999999999999999864 22222222356666778876641 2469999
Q ss_pred cCCCCcc
Q 046233 394 DLPGLLE 400 (518)
Q Consensus 394 DTPGlie 400 (518)
||||+..
T Consensus 146 DTeG~~~ 152 (447)
T 3q5d_A 146 DTQGTFD 152 (447)
T ss_dssp EEECCCS
T ss_pred cCCcccc
Confidence 9999865
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.20 E-value=0.00045 Score=70.71 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=76.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCC-CCCceeee--------------ceee--EEEec------------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIA-NYPFTTLL--------------PNLG--VVSFD------------------ 385 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia-~ypfTTl~--------------p~lg--~v~~~------------------ 385 (518)
.-|+|+|++|||||||++.|.+...... ...+...+ ...+ ++...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 3589999999999999999976421100 00000000 0111 11100
Q ss_pred CCceEEEEcCCCCccccccCCCcchhhh--ccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCC
Q 046233 386 YDSTMVVADLPGLLEGAHQGFGLGHEFL--RHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKM 463 (518)
Q Consensus 386 ~~~~l~I~DTPGliegas~~~gLg~~fL--r~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKi 463 (518)
....+.++||+|....... +..++. ...-..|-.++|+|+.... ..+..+ ..+.. ....-+|++||+
T Consensus 210 ~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~-~~~~~-----~~~it~iilTKl 278 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNRN---LMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQA-RQFNE-----AVKIDGIILTKL 278 (328)
T ss_dssp HTCSEEEEEECCSCCTTTC---HHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHH-HHHHH-----HSCCCEEEEECG
T ss_pred ccchhhHHhhccchhHHHH---HHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHH-HHHHH-----hcCCCEEEEeCc
Confidence 1235788999997532211 211111 1112368889999987642 222222 22221 012347889999
Q ss_pred CCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHHH
Q 046233 464 DLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHEV 500 (518)
Q Consensus 464 DL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~eL 500 (518)
|.... .-.+...+...+.++..++ +|+++++|
T Consensus 279 D~~a~---~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 279 DADAR---GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp GGCSC---CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred CCccc---hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 96432 2334455556678998887 67766543
No 235
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.13 E-value=0.0022 Score=59.01 Aligned_cols=87 Identities=10% Similarity=0.027 Sum_probs=54.7
Q ss_pred CceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLP 466 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~ 466 (518)
...++|+|+|+... ......+..||.+|+++..+... .....+...++.........++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCCC---------HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35799999998642 22333455699999999987655 55666666666443223346779999999854
Q ss_pred CcccchHHHHHHHHhcCCce
Q 046233 467 EAYEKWPSFKEKLQARGIEP 486 (518)
Q Consensus 467 ~~~e~~eel~~~l~~~g~~i 486 (518)
.. ....+.+.++..+.++
T Consensus 144 ~~--~~~~~~~~l~~~~~~v 161 (206)
T 4dzz_A 144 AT--MLNVLKESIKDTGVKA 161 (206)
T ss_dssp EE--EEHHHHHHHHHHTCCB
T ss_pred ch--HHHHHHHHHHHcCCce
Confidence 32 2234555555444433
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.06 E-value=0.0017 Score=68.79 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.8
Q ss_pred eeeeeeCCCCCChhHHHHHHh
Q 046233 341 ADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls 361 (518)
..|+++|.+||||||+...|.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999987
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.82 E-value=0.0031 Score=63.34 Aligned_cols=134 Identities=20% Similarity=0.176 Sum_probs=70.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-----CC----CC-CCceee---ec---eee--E-------------EEecCCceE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-----TI----AN-YPFTTL---LP---NLG--V-------------VSFDYDSTM 390 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-----~I----a~-ypfTTl---~p---~lg--~-------------v~~~~~~~l 390 (518)
.|+|+|.+||||||++..|...-. ++ .+ +..+.. .. ..+ . ... .+..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dl 185 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDH 185 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCE
Confidence 588999999999999999864211 11 00 000000 00 000 0 001 13579
Q ss_pred EEEcCCCCccccccCCCcchhhhcccc--ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCCCCc
Q 046233 391 VVADLPGLLEGAHQGFGLGHEFLRHTE--RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDLPEA 468 (518)
Q Consensus 391 ~I~DTPGliegas~~~gLg~~fLr~Ie--rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL~~~ 468 (518)
.|+||||....... +...+.+.+. .++.+++|+|++.. ...+. .....+. . . ...-+|+||+|....
T Consensus 186 vIiDT~G~~~~~~~---~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~---~~~~~~~-~-l-~~~giVltk~D~~~~ 254 (296)
T 2px0_A 186 VFVDTAGRNFKDPQ---YIDELKETIPFESSIQSFLVLSATAK--YEDMK---HIVKRFS-S-V-PVNQYIFTKIDETTS 254 (296)
T ss_dssp EEEECCCCCTTSHH---HHHHHHHHSCCCTTEEEEEEEETTBC--HHHHH---HHTTTTS-S-S-CCCEEEEECTTTCSC
T ss_pred EEEeCCCCChhhHH---HHHHHHHHHhhcCCCeEEEEEECCCC--HHHHH---HHHHHHh-c-C-CCCEEEEeCCCcccc
Confidence 99999998642111 1112222222 35677899998753 22222 2233332 1 1 234567799997643
Q ss_pred ccchHHHHHHHHhcCCceEEEe
Q 046233 469 YEKWPSFKEKLQARGIEPFCMS 490 (518)
Q Consensus 469 ~e~~eel~~~l~~~g~~i~~IS 490 (518)
...+...+...+.++..++
T Consensus 255 ---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---CHHHHHHHHTCSCCCSEEC
T ss_pred ---hhHHHHHHHHHCcCEEEEE
Confidence 2345555666677776664
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.70 E-value=0.0032 Score=63.71 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccc-----cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHT-----ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNK 462 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~I-----erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNK 462 (518)
..+.|+||||.......-......+.+.+ ..++.+++|+|+... ...+.......+. -...-+|+||
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~------~~i~gvVlTk 258 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA------VNVTGIILTK 258 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH------SCCCEEEEEC
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc------CCCCEEEEeC
Confidence 46999999996321110000001111111 237888999999732 2233333222221 1234567899
Q ss_pred CCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 463 MDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 463 iDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
+|-..... .+.......+.|+.+++. |+.+++
T Consensus 259 ~D~~~~gG---~~l~~~~~~~~Pi~~i~~--Ge~~~d 290 (306)
T 1vma_A 259 LDGTAKGG---ITLAIARELGIPIKFIGV--GEKAED 290 (306)
T ss_dssp GGGCSCTT---HHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred CCCccchH---HHHHHHHHHCCCEEEEeC--CCChhh
Confidence 99754322 344555556788888854 444443
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.47 E-value=0.0031 Score=68.13 Aligned_cols=143 Identities=19% Similarity=0.182 Sum_probs=73.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC------CCCC-CCCcee----------eeceeeEEEec------------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ------PTIA-NYPFTT----------LLPNLGVVSFD------------------ 385 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak------~~Ia-~ypfTT----------l~p~lg~v~~~------------------ 385 (518)
.-|+|||.+|||||||++.|.+.. ..+. ...+.. ....++++...
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 358999999999999999997531 1111 111110 01112232211
Q ss_pred CCceEEEEcCCCCccccccCCCcchh---hhcccc-----ccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEE
Q 046233 386 YDSTMVVADLPGLLEGAHQGFGLGHE---FLRHTE-----RCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYI 457 (518)
Q Consensus 386 ~~~~l~I~DTPGliegas~~~gLg~~---fLr~Ie-----rADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiI 457 (518)
.+..+.|+||+|....... +... +.+.++ ..+-+++|+|++... ..+..+....... . .-.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~---lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~-----~-itg 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSH---LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV-----G-LTG 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHH---HHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHT-----C-CSE
T ss_pred cCCCEEEEeCCCccchhhh---HHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhc-----C-CCE
Confidence 1246889999997532111 1111 111111 245678999987542 2222222222111 1 235
Q ss_pred EEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHHH
Q 046233 458 VAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTHE 499 (518)
Q Consensus 458 VVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~e 499 (518)
||+||+|-... .-.+...+...+.++.++. +|+++++
T Consensus 443 vIlTKLD~tak---gG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 443 ITLTKLDGTAK---GGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp EEEECGGGCSC---CTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred EEEEcCCCccc---ccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 78999996432 2334445555577887764 4555543
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.46 E-value=0.0067 Score=61.67 Aligned_cols=142 Identities=17% Similarity=0.106 Sum_probs=74.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCC----CC----CCCCc-------eee-----eceeeEEEe----------------
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQP----TI----ANYPF-------TTL-----LPNLGVVSF---------------- 384 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~----~I----a~ypf-------TTl-----~p~lg~v~~---------------- 384 (518)
.-|+++|.+|+||||++..|...-. ++ .+... .+. ...+.++..
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK 185 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHH
Confidence 3588999999999999999864311 11 11100 000 122333310
Q ss_pred ---cCCceEEEEcCCCCccccccCCCcchhh---hccc-----cccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 046233 385 ---DYDSTMVVADLPGLLEGAHQGFGLGHEF---LRHT-----ERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAE 453 (518)
Q Consensus 385 ---~~~~~l~I~DTPGliegas~~~gLg~~f---Lr~I-----erADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~ 453 (518)
.....++|+||||....... +...+ .+.+ ..+|.+++|+|+... ...+... +.+... -
T Consensus 186 ~~~~~~yD~VIIDTpg~l~~~~~---l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~----~~~~~~--~ 254 (320)
T 1zu4_A 186 KAKEQNYDLLLIDTAGRLQNKTN---LMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQA----EEFSKV--A 254 (320)
T ss_dssp HHHHTTCSEEEEECCCCGGGHHH---HHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHH----HHHTTT--S
T ss_pred HHHhcCCCEEEEcCCCcccccHH---HHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHH----HHHhhc--C
Confidence 12357999999997542110 10010 0111 237889999998742 3333332 233322 1
Q ss_pred CCEEEEEeCCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 454 KPYIVAFNKMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 454 kPiIVVlNKiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
...-+|+||+|..... ..+.......+.|+.++. .|+.++
T Consensus 255 ~i~GvVltk~d~~~~~---g~~~~~~~~~~~Pi~~i~--~Ge~~~ 294 (320)
T 1zu4_A 255 DVSGIILTKMDSTSKG---GIGLAIKELLNIPIKMIG--VGEKVD 294 (320)
T ss_dssp CCCEEEEECGGGCSCT---THHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred CCcEEEEeCCCCCCch---hHHHHHHHHHCcCEEEEe--CCCCcc
Confidence 2345789999975432 234444555577887775 344443
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.43 E-value=0.0093 Score=60.17 Aligned_cols=144 Identities=15% Similarity=0.079 Sum_probs=71.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC------CCCCCCce---------ee--eceeeEEEec------------------C
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP------TIANYPFT---------TL--LPNLGVVSFD------------------Y 386 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~------~Ia~ypfT---------Tl--~p~lg~v~~~------------------~ 386 (518)
-|+|+|++|||||||++.|.+... .+...... +. ...++++... .
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~~ 183 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKAR 183 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 588999999999999999975311 11000000 00 0112222111 0
Q ss_pred CceEEEEcCCCCccccccC-CCcchh---hhcc-ccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEe
Q 046233 387 DSTMVVADLPGLLEGAHQG-FGLGHE---FLRH-TERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFN 461 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~-~gLg~~---fLr~-IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlN 461 (518)
...+.++||+|........ ..+... ..+. ....+.+++++|+..... .+..+....+.. ...+|++|
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~------~~t~iivT 255 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAV------GLTGVIVT 255 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHH------CCSEEEEE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHc------CCcEEEEE
Confidence 2357799999975321110 001100 0011 124677888999876532 222222222211 13477899
Q ss_pred CCCCCCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 462 KMDLPEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 462 KiDL~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
|.|....... +.......+.++.+++ .|++++
T Consensus 256 h~d~~a~gg~---~l~i~~~~~~pi~~ig--~Ge~~~ 287 (304)
T 1rj9_A 256 KLDGTAKGGV---LIPIVRTLKVPIKFVG--VGEGPD 287 (304)
T ss_dssp CTTSSCCCTT---HHHHHHHHCCCEEEEE--CSSSTT
T ss_pred CCcccccccH---HHHHHHHHCCCeEEEe--CCCChh
Confidence 9987543332 2333444567887775 444443
No 242
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.41 E-value=0.0018 Score=65.37 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=22.6
Q ss_pred eceeeeeeCCCCCChhHHHHHHhccC
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++-++|+|+.|||||||++.|.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35678999999999999999999753
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.88 E-value=0.01 Score=59.47 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=32.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCCc-------eeeeceeeEEEecCCceEEEEcCCCCc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYPF-------TTLLPNLGVVSFDYDSTMVVADLPGLL 399 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~ypf-------TTl~p~lg~v~~~~~~~l~I~DTPGli 399 (518)
-++|+|.+|||||||+|+|. ... ..+...+ +|..+ ..+... ..-.++|+||+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~--~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFG--KGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEET--TTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcC--CCcEEEECcCcC
Confidence 58999999999999999999 532 2222222 22221 112221 134688999975
No 244
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.83 E-value=0.035 Score=52.19 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=50.3
Q ss_pred CceEEEEcCCCC-ccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 387 DSTMVVADLPGL-LEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 387 ~~~l~I~DTPGl-iegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
...++|+|+|+. .. ......+..||.+|+++..+. ........+...+.... ..++.+|+|++|.
T Consensus 67 ~yD~viiD~p~~~~~---------~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~----~~~~~vv~N~~~~ 132 (209)
T 3cwq_A 67 KYQNIVIDTQARPED---------EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG----NNRFRILLTIIPP 132 (209)
T ss_dssp GCSEEEEEEECCCSS---------SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC----SSSEEEEECSBCC
T ss_pred cCCEEEEeCCCCcCc---------HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc----CCCEEEEEEecCC
Confidence 357999999985 32 122334556999999998754 23344444445555322 4568899999986
Q ss_pred CC-cccchHHHHHHHHhcCCce
Q 046233 466 PE-AYEKWPSFKEKLQARGIEP 486 (518)
Q Consensus 466 ~~-~~e~~eel~~~l~~~g~~i 486 (518)
.. .. ..++.+.++..+.++
T Consensus 133 ~~~~~--~~~~~~~l~~~g~~v 152 (209)
T 3cwq_A 133 YPSKD--GDEARQLLTTAGLPL 152 (209)
T ss_dssp TTSCH--HHHHHHHHHHTTCCB
T ss_pred ccchH--HHHHHHHHHHcCCch
Confidence 54 21 234455555444433
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.77 E-value=0.026 Score=56.48 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=48.0
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhc--cccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLR--HTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMDL 465 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr--~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiDL 465 (518)
..+.|+||||...-... +...+.. ..-.++.+++|+|+... ...+..+.. +.+. -...-+|+||+|.
T Consensus 181 ~D~viiDtpp~~~~d~~---~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~----~~~~--~~i~givlnk~d~ 249 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEP---LMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARA----FDEK--VGVTGLVLTKLDG 249 (295)
T ss_dssp CCEEEEECCCCSSCCHH---HHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHH----HHHH--TCCCEEEEECGGG
T ss_pred CCEEEEeCCCCccccHH---HHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHH----Hhhc--CCCCEEEEECCCC
Confidence 47999999986431100 1111111 11247888999998742 233332222 2111 1234578999997
Q ss_pred CCcccchHHHHHHHHhcCCceEEEeccCCCCHH
Q 046233 466 PEAYEKWPSFKEKLQARGIEPFCMSAVKREGTH 498 (518)
Q Consensus 466 ~~~~e~~eel~~~l~~~g~~i~~ISAktgeGI~ 498 (518)
... .......+...+.|+..++ .|++++
T Consensus 250 ~~~---~g~~~~~~~~~~~pi~~i~--~g~~~~ 277 (295)
T 1ls1_A 250 DAR---GGAALSARHVTGKPIYFAG--VSEKPE 277 (295)
T ss_dssp CSS---CHHHHHHHHHHCCCEEEEC--------
T ss_pred Ccc---HHHHHHHHHHHCcCEEEEe--CCCCcc
Confidence 543 2334455555678888875 344443
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.76 E-value=0.0035 Score=65.02 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=21.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
.++|+|.+|||||||+|.|++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998643
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.76 E-value=0.034 Score=58.83 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=47.5
Q ss_pred CceEEEEcCCCCccccccCCCcchhh--hccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 387 DSTMVVADLPGLLEGAHQGFGLGHEF--LRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 387 ~~~l~I~DTPGliegas~~~gLg~~f--Lr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
...++|+||||...... .+..+. +..+-.++.+++|+|+... ...+..+ +.+.+. -...-||+||+|
T Consensus 180 ~~DvVIIDTaG~l~~d~---~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a----~~f~~~--l~i~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDE---PLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVA----RAFDEK--VGVTGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHH----HHHHHH--TCCCEEEEESGG
T ss_pred CCCEEEEcCCCcccccH---HHHHHHHHhhhccCCceEEEEEeccch--HHHHHHH----HHHHhc--CCceEEEEeCcC
Confidence 34699999999653210 111111 1112257889999998753 2222222 222211 123567899999
Q ss_pred CCCcccchHHHHHHHHhcCCceEEEe
Q 046233 465 LPEAYEKWPSFKEKLQARGIEPFCMS 490 (518)
Q Consensus 465 L~~~~e~~eel~~~l~~~g~~i~~IS 490 (518)
..... ..........+.++..+.
T Consensus 249 ~~~~~---g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 249 GDARG---GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp GCSSC---HHHHHHHHHHCCCEEEEE
T ss_pred CcccH---HHHHHHHHHHCCCEEEEe
Confidence 75332 233334445577877765
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.52 E-value=0.0037 Score=63.45 Aligned_cols=54 Identities=28% Similarity=0.335 Sum_probs=31.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC-CCCCCC-------ceeeeceeeEEEecCCceEEEEcCCCCcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP-TIANYP-------FTTLLPNLGVVSFDYDSTMVVADLPGLLE 400 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~-~Ia~yp-------fTTl~p~lg~v~~~~~~~l~I~DTPGlie 400 (518)
.++|+|.+|||||||+|+|.+... ..+... .+|.... .+... ...++|+||+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~---~g~v~dtpg~~~ 236 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS---GGLVADTPGFSS 236 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET---TEEEESSCSCSS
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC---CEEEecCCCccc
Confidence 689999999999999999987532 222222 1222221 12222 247889999754
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.42 E-value=0.0065 Score=55.67 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=25.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC-C-CCCCceeeecee
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT-I-ANYPFTTLLPNL 379 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~-I-a~ypfTTl~p~l 379 (518)
-++|+|++|||||||++.|.+..+. . .....+|..|..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ 46 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKK 46 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCc
Confidence 4899999999999999999876431 1 233445554443
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.15 E-value=0.0074 Score=57.41 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=30.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCCC--CCCCCceeeeceeeE
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQPT--IANYPFTTLLPNLGV 381 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~~--Ia~ypfTTl~p~lg~ 381 (518)
-|+|+|++|||||||+++|....+. ....+.||..|..|.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 4789999999999999999986552 244566777776554
No 251
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.14 E-value=0.017 Score=57.73 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++|+|++|||||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 58999999999999999998754
No 252
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.86 E-value=0.012 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++|+|++|||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 253
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.84 E-value=0.22 Score=49.08 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=41.3
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEE-EEEeCCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYI-VAFNKMDL 465 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiI-VVlNKiDL 465 (518)
..++|+|||+..... .+...+..||.+|+|+..+. .+......+...+..... ....+++ +|+|+++.
T Consensus 157 yD~ViiD~p~~~~~~--------~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCG--------GFAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSK-NYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCG--------GGGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTT-TCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchH--------HHHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhh-cCCCceEEEEEecCCc
Confidence 468999998754311 12234566999999997643 334445555555654321 1234544 89999984
No 254
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.67 E-value=0.24 Score=47.62 Aligned_cols=64 Identities=8% Similarity=0.054 Sum_probs=43.9
Q ss_pred ceEEEEcCCCCccccccCCCcchhhhccccccCceEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 388 STMVVADLPGLLEGAHQGFGLGHEFLRHTERCSALVHVIDGSAEQPEFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 388 ~~l~I~DTPGliegas~~~gLg~~fLr~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
..++|+|+|.... ......+..||.+|+|+..+. .+...+..+...++.+. ...++.+|+|+++
T Consensus 145 yD~viiD~pp~~~---------~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~---~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 145 YDYIVIDTNPSLD---------VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN---LFLPIFLIITRFK 208 (267)
T ss_dssp CSEEEEEECSSCS---------HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT---CCCCEEEEEEEEC
T ss_pred CCEEEEECcCCcc---------HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh---ccCCEEEEEeccc
Confidence 4689999998532 223344556999999998854 45555666666666543 2457889999994
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.65 E-value=0.014 Score=54.49 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.8
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++|+|++|||||||++.|.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998753
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.64 E-value=0.014 Score=53.57 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
-|+|+|++|||||||++.|++..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 489999999999999999998643
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.51 E-value=0.015 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|++|||||||++.|++.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999875
No 258
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.46 E-value=0.016 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
-++|+|++|||||||++.|++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999998653
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.42 E-value=0.017 Score=54.34 Aligned_cols=39 Identities=36% Similarity=0.422 Sum_probs=29.9
Q ss_pred eeeeCCCCCChhHHHHHHhccCCC-C-CCCCceeeeceeeE
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQPT-I-ANYPFTTLLPNLGV 381 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~~-I-a~ypfTTl~p~lg~ 381 (518)
|+|+|++|||||||+++|....+. + -..+.||..|..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 789999999999999999876552 2 34567777766554
No 260
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.39 E-value=0.017 Score=54.80 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+.++.---++|+|++|||||||++.|.+..
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34444444468999999999999999999854
No 261
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.35 E-value=0.018 Score=52.92 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.5
Q ss_pred eeeeCCCCCChhHHHHHHhccCC
Q 046233 343 VGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
|+|+|++|||||||++.|++..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999987543
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.33 E-value=0.023 Score=55.29 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=25.8
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++++. --++|+|+.|||||||++.|++-
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666 67999999999999999999985
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.30 E-value=0.017 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
-++|+|++|||||||++.|++..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 588999999999999999998654
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.12 E-value=0.02 Score=53.46 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=20.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+|||||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.08 E-value=0.021 Score=53.48 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.3
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
-|+|+|++|||||||++.|....+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998653
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.05 E-value=0.026 Score=54.50 Aligned_cols=30 Identities=37% Similarity=0.539 Sum_probs=23.8
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++..---++|+|+.|||||||++.|++-.
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 333333468999999999999999999853
No 267
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.02 E-value=0.025 Score=52.41 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=22.3
Q ss_pred hhhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 332 WLELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 332 ~l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+.+.++....|+|+|++||||||+.+.|...
T Consensus 17 ~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 17 NLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34555666668999999999999999999753
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.94 E-value=0.025 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+|||||||.+.|...
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.71 E-value=0.028 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=19.2
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-++|+|++|||||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999986
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.69 E-value=0.036 Score=53.63 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=24.1
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+.++.--.++|+|+.|||||||++.|++-
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344444446899999999999999999985
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.67 E-value=0.034 Score=50.68 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=22.9
Q ss_pred eeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.---++|+|+.|||||||++.|++..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 433468999999999999999999865
No 272
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.62 E-value=0.027 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
--++|+|++|||||||++.+..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 3589999999999999998653
No 273
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.62 E-value=0.034 Score=54.66 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=23.7
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|++-.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333333468999999999999999999853
No 274
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.59 E-value=0.035 Score=54.06 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=24.9
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++|+|..|||||||++.|++-.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444444468999999999999999999863
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.57 E-value=0.03 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-|+|+|.+|||||||++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999998754
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.46 E-value=0.036 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.45 E-value=0.036 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.0
Q ss_pred eceeeeeeCCCCCChhHHHHHHhcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.++-++|+|++|||||||+++|...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3567899999999999999999875
No 278
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.40 E-value=0.04 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
--++|+|+.|||||||++.|++-.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 368999999999999999999853
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.37 E-value=0.035 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|.+|||||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.34 E-value=0.041 Score=53.23 Aligned_cols=30 Identities=37% Similarity=0.420 Sum_probs=23.8
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|++-.
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333333468999999999999999999853
No 281
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.27 E-value=0.026 Score=54.03 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=23.8
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++..---++|+|+.|||||||++.|++-.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334333468999999999999999999853
No 282
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.23 E-value=0.024 Score=60.14 Aligned_cols=102 Identities=13% Similarity=-0.027 Sum_probs=51.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhccCCCCCCCCceeeeceeeEEEe---cCCceEEEEcCCCCccccccCCC---cchhhhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSF---DYDSTMVVADLPGLLEGAHQGFG---LGHEFLR 414 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak~~Ia~ypfTTl~p~lg~v~~---~~~~~l~I~DTPGliegas~~~g---Lg~~fLr 414 (518)
..|+++|.|||||||+.++|..... ....+ |...+.+.+.. .......+||..|.......... .......
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~-~~~~~--t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN-FIGVP--TREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-HTTCC--EEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh-ccCCC--ceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999986421 00011 11111000000 00122346777764110000000 0001123
Q ss_pred cccccCceEEEEeCCCCCCHHHHHHHHHHHHh
Q 046233 415 HTERCSALVHVIDGSAEQPEFEFDAVRLELEM 446 (518)
Q Consensus 415 ~IerADvlL~VVDaS~~~s~e~~~~L~~eL~~ 446 (518)
++..+...++|+|+++. .....+.|...++.
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 34457888999999986 45555556555553
No 283
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.19 E-value=0.045 Score=54.43 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=23.4
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+++.--.++|+|+.|||||||++.|++-.
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33333468999999999999999999853
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.16 E-value=0.034 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+|||||||++.|.+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 285
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.11 E-value=0.033 Score=54.45 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=24.0
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|++-.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444468999999999999999999853
No 286
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.06 E-value=0.042 Score=55.65 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=24.0
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+.++.--.|+|+|++|||||||++.|.+-
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 344444457999999999999999999864
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.04 E-value=0.043 Score=48.16 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=18.0
Q ss_pred eeeeeCCCCCChhHHHHHH
Q 046233 342 DVGIVGAPNAGKSTLLSVI 360 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~L 360 (518)
-|+|+|.+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4889999999999999999
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.03 E-value=0.042 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+|||||||.+.|...
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 289
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.03 E-value=0.035 Score=53.81 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.4
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++++.--.++|+|+.|||||||++.|++-.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34444444579999999999999999999863
No 290
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.98 E-value=0.044 Score=51.55 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.2
Q ss_pred eeeeeeCCCCCChhHHHHHHh
Q 046233 341 ADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls 361 (518)
--++|+|++|||||||++.|+
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 358999999999999999988
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.98 E-value=0.041 Score=52.34 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=21.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-.++|+|+.|||||||++.|++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999986
No 292
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.93 E-value=0.044 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-|+|+|++|||||||.++|....
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998754
No 293
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.93 E-value=0.049 Score=52.23 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=22.7
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.+.++.-.-|+|+|..|||||||++.|.+.
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555557999999999999999999874
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.89 E-value=0.037 Score=53.17 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.8
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++|+|+.|||||||++.|++..
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444444478999999999999999999853
No 295
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.85 E-value=0.047 Score=52.26 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.7
Q ss_pred eeeeeeCCCCCChhHHHHHHh
Q 046233 341 ADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls 361 (518)
..|+|+|.+|||||||++.|+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 296
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.83 E-value=0.045 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.7
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999986
No 297
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.81 E-value=0.037 Score=54.58 Aligned_cols=30 Identities=37% Similarity=0.482 Sum_probs=23.9
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|++-.
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334433468999999999999999999853
No 298
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.80 E-value=0.037 Score=54.97 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.---++|+|+.|||||||++.|++-.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3444444468999999999999999999853
No 299
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.78 E-value=0.042 Score=51.03 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.2
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-++|+|++|||||||++.|++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 300
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.74 E-value=0.051 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-|+|+|.|||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999987
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.73 E-value=0.037 Score=52.38 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=18.0
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHh-ccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVIS-AAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls-~ak 364 (518)
+.++.-.-|+|+|++|||||||++.|. +..
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 334433468999999999999999999 653
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.73 E-value=0.038 Score=52.90 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=23.7
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.--.++|+|+.|||||||++.|++..
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333333468999999999999999999853
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.70 E-value=0.042 Score=53.50 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=23.5
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
++++.---++|+|+.|||||||++.|++-
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444446899999999999999999984
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.63 E-value=0.052 Score=48.80 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 305
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.62 E-value=0.057 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999763
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.62 E-value=0.051 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-.-|+|+|++|||||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999875
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.60 E-value=0.052 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.4
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.|+|+|.+|||||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999998753
No 308
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.54 E-value=0.04 Score=55.75 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=24.3
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+.++.--.|+|||..|||||||++.|++-
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 344444457999999999999999999985
No 309
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.48 E-value=0.045 Score=53.53 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=23.5
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+++..--.++|+|+.|||||||++.|++-
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33443346899999999999999999985
No 310
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.48 E-value=0.046 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-.++|+|..|||||||++.|++-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.43 E-value=0.044 Score=53.81 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=24.5
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+.++.--.++|+|+.|||||||++.|++-.
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3344444469999999999999999999853
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.40 E-value=0.057 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+|||||||.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 313
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.40 E-value=0.044 Score=54.16 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=24.5
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++|+|..|||||||++.|++-.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444444468999999999999999999863
No 314
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.33 E-value=0.046 Score=53.64 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=22.9
Q ss_pred heeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 337 LKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 337 LK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+..---++|+|+.|||||||++.|++-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3333368999999999999999999863
No 315
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.33 E-value=0.057 Score=48.84 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..++|+|++|+|||||++++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 316
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.29 E-value=0.062 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 317
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.28 E-value=0.063 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|.|+|++||||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999875
No 318
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.26 E-value=0.059 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
--|+|+|++|||||||++.|.+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999999874
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.19 E-value=0.05 Score=53.20 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=24.0
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.--.++|+|+.|||||||++.|++-.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334433468999999999999999999863
No 320
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.15 E-value=0.07 Score=48.53 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999864
No 321
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.10 E-value=0.032 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+|||||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.07 E-value=0.068 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 323
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.00 E-value=0.053 Score=53.34 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=23.8
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++.--.++|+|..|||||||++.|++-.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 333333468999999999999999999863
No 324
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.93 E-value=0.084 Score=54.81 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=23.7
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|.+-.
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 333333468999999999999999999853
No 325
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.91 E-value=0.09 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
--++|+|++|||||||++.|.+-.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 358999999999999999999853
No 326
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.86 E-value=0.062 Score=54.85 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=22.1
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..+++|+|.+|||||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999985
No 327
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.84 E-value=0.069 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|+|+|.+|||||||++.|.+.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 35899999999999999999875
No 328
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.82 E-value=0.058 Score=53.17 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=24.6
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++++ --.++|+|+.|||||||++.|++.
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 344455 457899999999999999999985
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.66 E-value=0.081 Score=47.57 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=19.4
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.|+|+|.+||||||+.+.|..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.51 E-value=0.086 Score=48.14 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999865
No 331
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.47 E-value=0.077 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|.+||||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 332
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.44 E-value=0.093 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.36 E-value=0.093 Score=47.31 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.|+|+|.+||||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 334
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.22 E-value=0.085 Score=47.21 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=20.4
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-++|+|.+|+|||||++++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.12 E-value=0.097 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+|||||||.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 336
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.08 E-value=0.11 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.-|+|+|.+|||||||+.+|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999864
No 337
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.99 E-value=0.52 Score=41.28 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
..|.|.|.+|+|||+|..++....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998753
No 338
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.94 E-value=0.11 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.7
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 339
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.90 E-value=0.11 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|.|.+||||||+.+.|...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 340
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.82 E-value=0.089 Score=53.99 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=25.6
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.+.++.-..|+|+|.+|||||||++.|.+.
T Consensus 168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 168 LRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4455555557999999999999999999985
No 341
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.79 E-value=0.088 Score=54.36 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=25.0
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++++.---++|+|+.|||||||++.|.+-.
T Consensus 34 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444444468999999999999999999853
No 342
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=90.78 E-value=0.28 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred eceeeeeeCCCCCChhHHHHHHh
Q 046233 339 LVADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls 361 (518)
.+.-|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 46678999999999999999665
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.75 E-value=0.12 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+|+|+|.|||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.68 E-value=0.09 Score=53.40 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=25.6
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+.++.--.|+|+|.+|||||||++.|.+..
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445445579999999999999999999863
No 345
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.65 E-value=0.077 Score=53.10 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=23.8
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++.--.++|+|..|||||||++.|++-.
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 333333468999999999999999999853
No 346
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.63 E-value=0.11 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999975
No 347
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.63 E-value=0.12 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|.+||||||+.+.|...
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 348
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.59 E-value=0.12 Score=46.49 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=19.7
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 349
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.59 E-value=0.11 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|+||+|||||+++|.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999875
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.56 E-value=0.092 Score=54.26 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=23.7
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|++|||||||++.|.+-.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 333333468999999999999999999853
No 351
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.54 E-value=0.12 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-++|+|.+|+|||||+..|+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
No 352
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.49 E-value=0.096 Score=54.20 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=24.2
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.---++|+|+.|||||||++.|.+-.
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3344433468999999999999999999853
No 353
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.48 E-value=0.13 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 354
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.47 E-value=0.13 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 355
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.44 E-value=0.1 Score=52.11 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|+|+|.+|||||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 356
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.43 E-value=0.097 Score=54.60 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=23.7
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|++|||||||++.|.+-.
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 333333458999999999999999999853
No 357
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.41 E-value=0.13 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.40 E-value=0.14 Score=45.36 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.38 E-value=0.11 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.-|+|+|.+|||||||++.|..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 360
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.35 E-value=0.14 Score=47.94 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.|||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 361
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.35 E-value=0.1 Score=54.16 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=23.8
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|.+-.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 334333468999999999999999999853
No 362
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.34 E-value=0.12 Score=50.61 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=24.4
Q ss_pred hhhhhee---ceeeeeeCCCCCChhHHHHHHhc
Q 046233 333 LELELKL---VADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 333 l~lELK~---ia~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
+.++++. -..|+|+|++||||||+.+.|..
T Consensus 38 ~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 38 KAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4455554 45799999999999999999976
No 363
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.27 E-value=0.1 Score=54.18 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=23.6
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
++++.---++|+|+.|||||||++.|.+-.
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 333333358999999999999999999853
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.26 E-value=0.13 Score=46.32 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.3
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999976
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.26 E-value=0.14 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 366
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.14 E-value=0.12 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|++|||||||+++|++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999874
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.12 E-value=0.13 Score=46.46 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 368
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.10 E-value=0.15 Score=49.41 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.9
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.-|+|+|.|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999999999863
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.07 E-value=0.12 Score=46.65 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.98 E-value=0.14 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.6
Q ss_pred eeeeeeCCCCCChhHHHHHHh
Q 046233 341 ADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls 361 (518)
..|+|+|++|||||||++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.96 E-value=0.057 Score=49.77 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|.+|||||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 372
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.80 E-value=0.13 Score=46.74 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|+|+|.+||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999764
No 373
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.78 E-value=0.13 Score=54.87 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=24.0
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++.-..|+|+|..|||||||++.|++-
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 34444457999999999999999999875
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.71 E-value=0.14 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-.|+|+|.+|||||||++.|.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 375
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.70 E-value=0.14 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
--++|+|..|||||||++.|.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.69 E-value=0.13 Score=47.16 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 377
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.63 E-value=0.15 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|++|+|||||+++|.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999975
No 378
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.59 E-value=0.15 Score=46.00 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.4
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-.+|+|..|||||||+.+|...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999754
No 379
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.58 E-value=0.11 Score=54.29 Aligned_cols=31 Identities=32% Similarity=0.497 Sum_probs=24.5
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++++.---++|+|++|||||||++.|.+-
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 3344444446899999999999999999874
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.55 E-value=0.15 Score=45.90 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.7
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.|||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.54 E-value=0.15 Score=47.90 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 382
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.53 E-value=0.13 Score=46.00 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=15.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEEECCC----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999754
No 383
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.52 E-value=0.12 Score=48.96 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.3
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|..|||||||++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.48 E-value=0.15 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 385
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.44 E-value=0.17 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.|||||||+.+.|...
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 386
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.41 E-value=0.15 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.0
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 387
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.31 E-value=0.092 Score=54.01 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=24.2
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.---++|+|+.|||||||++.|.+-.
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3344433468999999999999999999853
No 388
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.30 E-value=0.15 Score=45.71 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 389
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.24 E-value=0.18 Score=44.39 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|.|+|.+|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 390
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.24 E-value=0.17 Score=55.25 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=24.8
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++|+|+.|||||||++.|++-.
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3444444579999999999999999999853
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.23 E-value=0.15 Score=47.65 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999754
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.15 E-value=0.15 Score=50.01 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=22.4
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+..---++|+|.+|+|||||+..|+..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3433345899999999999999999864
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.02 E-value=0.17 Score=51.42 Aligned_cols=22 Identities=41% Similarity=0.518 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|.+|||||||++.|...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 394
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.00 E-value=0.18 Score=47.07 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-++|+|.+|+|||||+..|+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999873
No 395
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.97 E-value=0.17 Score=50.85 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.0
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..++|+|++|+|||||++.|.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999875
No 396
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.95 E-value=0.2 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999754
No 397
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.84 E-value=0.16 Score=54.79 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=24.4
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.+.++.-..|+|+|.+|||||||+++|++.-
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3334444459999999999999999999853
No 398
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.82 E-value=0.17 Score=55.05 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=25.0
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++++.--.++++|+.|||||||++.|++-
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3344444457999999999999999999985
No 399
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.82 E-value=0.2 Score=54.81 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=24.9
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++++|++|||||||++.|.+-.
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3444444579999999999999999999853
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=88.80 E-value=0.083 Score=54.39 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=24.2
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.---++|+|+.|||||||++.|.+-.
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3334333468999999999999999999853
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.77 E-value=0.22 Score=44.29 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+..|+|+|.+||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999753
No 402
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.63 E-value=0.2 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-++|+|.+|+|||||+..|+.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 403
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.57 E-value=1.2 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|.|.|+||+|||+|.+++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35899999999999999999875
No 404
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.54 E-value=0.19 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-|+|+|++|||||||+++|++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998753
No 405
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.53 E-value=0.18 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 36999999999999999999874
No 406
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.40 E-value=0.74 Score=48.77 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.4
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..-|.|.|+||+|||+|.+++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999875
No 407
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.34 E-value=0.2 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|+||||||||.++|...
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 408
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.16 E-value=0.24 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 409
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.12 E-value=0.22 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.068 Sum_probs=20.2
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|+|+|.+|||||||.+.|...
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999988753
No 410
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.09 E-value=0.26 Score=45.82 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-|+|+|.+||||||+.+.|..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 411
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.09 E-value=0.17 Score=55.02 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=24.8
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++++.--.++++|+.|||||||++.|.+-
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 3344444457999999999999999999885
No 412
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.04 E-value=0.18 Score=54.19 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=23.6
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+.++. --++|+|+.|||||||++.|++-
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 344555 56899999999999999999864
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.00 E-value=0.3 Score=46.81 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.5
Q ss_pred eceeeeeeCCCCCChhHHHHHHhcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
....|+|+|.|||||||+.+.|...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999753
No 414
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.98 E-value=0.26 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|++|||||||..+|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999764
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.91 E-value=0.22 Score=53.92 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=21.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++|+|..|||||||++.|++..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.88 E-value=0.21 Score=51.13 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=24.4
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+..--.++|+|.+|||||||++.|++..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334444579999999999999999999863
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.85 E-value=0.28 Score=45.58 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=22.7
Q ss_pred hheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 336 ELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 336 ELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+..-.-|+|+|.+||||||+.+.|...
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444456899999999999999999764
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.79 E-value=0.22 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.9
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-++|||+.|||||||++.|++..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999863
No 419
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.74 E-value=0.23 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 420
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.55 E-value=0.21 Score=54.44 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.6
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++++.--.++++|+.|||||||++.|++-.
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444479999999999999999999853
No 421
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.55 E-value=0.23 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
--|+|||..|||||||++.|.+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 36899999999999999999763
No 422
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.53 E-value=0.18 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|.|+|.|||||||+.+.|...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 423
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.40 E-value=0.26 Score=47.05 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|+||+|||||+++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 424
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.28 E-value=0.29 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.15 E-value=0.23 Score=54.25 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=24.8
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.+.++.--.++++|++|||||||++.|.+-
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344444457999999999999999999885
No 426
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=86.98 E-value=0.27 Score=54.24 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-++|+|+.|||||||++.|++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999854
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.95 E-value=0.29 Score=46.82 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.-|+|.|.+||||||+++.|...-
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998753
No 428
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=86.68 E-value=0.31 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|.|.|.+|+|||||+.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 429
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.44 E-value=0.25 Score=43.58 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.8
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|.|+|.+|+|||+|+.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.41 E-value=0.32 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=19.4
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-|.|+|.|||||||+.++|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999986
No 431
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.14 E-value=0.33 Score=50.35 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|+|+|++|+|||||++.|.+.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 432
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.03 E-value=0.33 Score=49.75 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=18.6
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-++|+|+.|||||||+++|+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999873
No 433
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.03 E-value=0.35 Score=44.21 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|.|.|.+|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 434
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.02 E-value=0.37 Score=42.93 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.3
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-.+|+|+.|+|||||+.+|.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999863
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.97 E-value=0.31 Score=51.55 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=24.6
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+..--.++|+|.+|||||||++.|++..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444444579999999999999999999863
No 436
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.96 E-value=0.31 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=21.1
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++|+|..|||||||++.|++..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999854
No 437
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.91 E-value=0.13 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
-++|+|+.|||||||+.+|++..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 36899999999999999998763
No 438
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=85.89 E-value=1.6 Score=42.91 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=26.1
Q ss_pred CceEEEEeCCCCCC-HHHHHHHHHHHHhcCCCCCCCCEEEEEeCCC
Q 046233 420 SALVHVIDGSAEQP-EFEFDAVRLELEMFSPEIAEKPYIVAFNKMD 464 (518)
Q Consensus 420 DvlL~VVDaS~~~s-~e~~~~L~~eL~~~~~~l~~kPiIVVlNKiD 464 (518)
..-++++|=.+.-+ ......+...++.+. ...++|++.|..+
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~---~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYS---SNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHG---GGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCC---CCcEEEEEeCCcc
Confidence 55677777666544 445556666666443 3466777777765
No 439
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.88 E-value=0.32 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++|+|..|||||||++.|++..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 440
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=85.77 E-value=1.2 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|.|.|.||+|||+|+.+|...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999765
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=85.74 E-value=0.39 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|.|+|+|||||+|+...|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.64 E-value=0.37 Score=43.76 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-+.|.|.+|+|||||+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999754
No 443
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.55 E-value=0.42 Score=45.84 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|.|.+||||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998763
No 444
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.44 E-value=0.36 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=21.7
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
.++|+|..|||||||++.|++..+
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998643
No 445
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.42 E-value=0.27 Score=58.78 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.9
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.++.--+|+|||.+|||||||++.|.+-
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 34444458999999999999999999874
No 446
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.28 E-value=0.4 Score=43.66 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|.|.+||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999763
No 447
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.21 E-value=0.4 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.4
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 448
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=85.21 E-value=1.6 Score=45.80 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|.|.|+||+|||+|..+|...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 449
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.90 E-value=0.36 Score=46.93 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=19.2
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-++|+|.+|+|||||+..|+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.64 E-value=0.41 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=21.2
Q ss_pred eeeeeCCCCCChhHHHHHHhccC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
.++|+|+.|||||||++.|++..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 451
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.63 E-value=0.45 Score=42.81 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..+.|.|.+|+|||+|+..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.07 E-value=0.45 Score=52.42 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.5
Q ss_pred eeeeeCCCCCChhHHHHHHhccCC
Q 046233 342 DVGIVGAPNAGKSTLLSVISAAQP 365 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ak~ 365 (518)
-++|+|..|||||||++.|++...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 389999999999999999998654
No 453
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=83.86 E-value=3.7 Score=45.84 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=20.2
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|.|+|+||+|||+|..+|...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.81 E-value=0.52 Score=44.59 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
.|+|+|.+||||||+.+.|..
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 455
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.80 E-value=0.48 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|.|.|+||+|||||++++...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 456
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.72 E-value=0.51 Score=44.58 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|.|.|+||+|||+|+.++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999874
No 457
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.70 E-value=0.57 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|+|.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.64 E-value=0.45 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
..|+|+|.+||||||+.+.|..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999973
No 459
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.61 E-value=0.47 Score=44.21 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=18.0
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-++|+|.||+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 460
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.49 E-value=0.55 Score=54.61 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=24.1
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.++.--.++|+|..|||||||++.|++..
T Consensus 694 l~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 694 FQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 333444469999999999999999999863
No 461
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.46 E-value=1.6 Score=46.71 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.7
Q ss_pred eceeeeeeCCCCCChhHHHHHHhcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...-|.|.|+||+|||+|.+++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3446999999999999999999875
No 462
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.41 E-value=0.52 Score=49.16 Aligned_cols=22 Identities=41% Similarity=0.440 Sum_probs=19.8
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|+||||||||.++|...
T Consensus 260 lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999864
No 463
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.40 E-value=0.51 Score=45.43 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.2
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|.|.|+||+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999875
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.04 E-value=0.61 Score=44.66 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.2
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|.|+|+|||||+|+...|+..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999864
No 465
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.99 E-value=0.58 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|++|||||||.+.|...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 466
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.76 E-value=1.7 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.1
Q ss_pred eeeeeeCCCCCChhHHHHHHhccC
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
..|.|.|.+|+|||+|.++|....
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999999999998753
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.70 E-value=0.48 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+.++|+|++|+|||||++.|.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999873
No 468
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=82.54 E-value=0.65 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.7
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-|.|.|+||+|||+|+++|...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999875
No 469
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=82.39 E-value=0.63 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.++|+|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 470
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.37 E-value=0.81 Score=45.13 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.8
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..+.|.|+||+|||||++++...
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999865
No 471
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.17 E-value=0.62 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=21.8
Q ss_pred eceeeeeeCCCCCChhHHHHHHhcc
Q 046233 339 LVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 339 ~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.++.++|.|++|+||||++.+|.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999875
No 472
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.98 E-value=0.59 Score=55.95 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=25.8
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhcc
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
+.+.++.--.++|||.+|||||||++.|.+-
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence 4455555568999999999999999999985
No 473
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.79 E-value=0.62 Score=55.61 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=25.5
Q ss_pred hhhhheeceeeeeeCCCCCChhHHHHHHhccC
Q 046233 333 LELELKLVADVGIVGAPNAGKSTLLSVISAAQ 364 (518)
Q Consensus 333 l~lELK~ia~V~LVG~pNAGKSTLLn~Ls~ak 364 (518)
+.+.++.--.++|||.+|||||||++.|.+-.
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444445579999999999999999998753
No 474
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.76 E-value=0.63 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.5
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-+.|.|+||+|||||++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999864
No 475
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.66 E-value=0.54 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|.|.|+||+|||+|+++|...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999864
No 476
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=81.42 E-value=0.73 Score=47.42 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.0
Q ss_pred eeceeeeeeCCCCCChhHHHHHHh
Q 046233 338 KLVADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 338 K~ia~V~LVG~pNAGKSTLLn~Ls 361 (518)
+...+|+|+|.+++|||||+.++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456799999999999999999873
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.41 E-value=0.57 Score=45.07 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..-|+|.|.+||||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999875
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.41 E-value=0.73 Score=43.05 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=17.9
Q ss_pred eeeeeCCCCCChhHHHHHHh
Q 046233 342 DVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls 361 (518)
-.+|+|..|+|||||+.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 46799999999999999985
No 479
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=81.41 E-value=0.39 Score=52.35 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.9
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|++|||||||++.|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 46899999999999999999875
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=81.25 E-value=0.76 Score=44.60 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.3
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+++|+|.|||||||+...|...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999753
No 481
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=80.91 E-value=0.63 Score=47.44 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.-++|+|.+|+|||||+..|+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999875
No 482
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.77 E-value=0.74 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|+|+|+||+|||+|.++|...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999999875
No 483
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.59 E-value=0.77 Score=44.32 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=20.6
Q ss_pred eeeeeeCCCCCChhHHHHHHhcc
Q 046233 341 ADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 341 a~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
..|.|.|+||+|||+|++++...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 484
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.98 E-value=0.72 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.4
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|.|.|+||+|||+|..++...
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4667799999999999999875
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=79.94 E-value=1 Score=46.66 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=20.6
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|+|+|++|+|||||...|...
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999988653
No 486
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.81 E-value=0.77 Score=45.86 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.0
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-.+|+|..|||||||+.+|.-
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999973
No 487
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.78 E-value=0.48 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=21.3
Q ss_pred hhhheeceeeeeeCCCCCChhHHHHHHh
Q 046233 334 ELELKLVADVGIVGAPNAGKSTLLSVIS 361 (518)
Q Consensus 334 ~lELK~ia~V~LVG~pNAGKSTLLn~Ls 361 (518)
.+.+..--.++|+|+.|||||||++.++
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3444444468999999999999998653
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.60 E-value=0.8 Score=43.43 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=19.6
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|.|.+||||||+++.|...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
No 489
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.57 E-value=0.78 Score=43.44 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|.|.+||||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 490
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=79.50 E-value=0.24 Score=50.73 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred hhheeceeeeeeCCCCCChhHHHHHHhc
Q 046233 335 LELKLVADVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 335 lELK~ia~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
+++..- .++|+|..|||||||+++|..
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 333333 689999999999999998853
No 491
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=79.50 E-value=0.77 Score=44.62 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.5
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|.|.|+||+|||+|..++...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999987654
No 492
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.25 E-value=0.84 Score=45.29 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=21.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|.|.|++|+|||||++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=79.22 E-value=0.94 Score=41.84 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.7
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.|+|+|.+||||||+.+.|...
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998763
No 494
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.21 E-value=0.69 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.0
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
--.++|+|..|||||||++.|++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999853
No 495
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.19 E-value=0.75 Score=49.28 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=0.0
Q ss_pred eeeeCCCCCChhHHHHH--Hhc
Q 046233 343 VGIVGAPNAGKSTLLSV--ISA 362 (518)
Q Consensus 343 V~LVG~pNAGKSTLLn~--Ls~ 362 (518)
++|+|.+|||||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 496
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.19 E-value=0.9 Score=43.70 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.3
Q ss_pred ceeeeeeCCCCCChhHHHHHHhcc
Q 046233 340 VADVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 340 ia~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
...|.|.|+||+|||+|..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999999875
No 497
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.02 E-value=0.73 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=19.9
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
.+++.|+||+||||+..+|.+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 498
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=78.50 E-value=0.89 Score=49.13 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.2
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-++|+|+||+|||||+++|.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999875
No 499
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.04 E-value=1.1 Score=42.88 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=20.1
Q ss_pred eeeeeCCCCCChhHHHHHHhcc
Q 046233 342 DVGIVGAPNAGKSTLLSVISAA 363 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~a 363 (518)
-|+|+|.+++|||||...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4889999999999999999865
No 500
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=78.00 E-value=0.72 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=16.2
Q ss_pred eeeeeCCCCCChhHHHHHHhc
Q 046233 342 DVGIVGAPNAGKSTLLSVISA 362 (518)
Q Consensus 342 ~V~LVG~pNAGKSTLLn~Ls~ 362 (518)
-|+|.|.+||||||+.+.|..
T Consensus 7 iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
Done!