BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046235
         (294 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HUO|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase In
           Complex With Substrate
 pdb|3BXD|A Chain A, Crystal Structure Of Mouse Myo-Inositol Oxygenase
           (Re-Refined)
          Length = 289

 Score =  251 bits (640), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 125/271 (46%), Positives = 172/271 (63%), Gaps = 5/271 (1%)

Query: 25  PETNSFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECC 84
           PE      +FR+Y         V   Y+  H +QT DFV R R +YG  +  +M+I E  
Sbjct: 23  PEMAKSKDSFRNY-TSGPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAV 81

Query: 85  ELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGEL 144
            +L++ VDESDPD+D P   H  QTAE IRK +P++DW HL GL+HDLGK++    +GE 
Sbjct: 82  GMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL--WGE- 138

Query: 145 PQWAVVGDTFPVGCAFDESIVH-HKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGH 203
           PQWAVVGDTFPVGC    S+V     F++NPD  +P ++ + G Y    GL+NV MSWGH
Sbjct: 139 PQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLENVLMSWGH 198

Query: 204 DDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDL 263
           D+Y+Y + K NK +LPS   ++IR+HSFY  H    Y+ L +++D++ L W++ FNK+DL
Sbjct: 199 DEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLDMLPWVQEFNKFDL 258

Query: 264 YSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294
           Y+K     DVE ++PYY  LI+KY P  L W
Sbjct: 259 YTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289


>pdb|2IBN|A Chain A, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 246

 Score =  216 bits (551), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 113/245 (46%), Positives = 151/245 (61%), Gaps = 13/245 (5%)

Query: 51  YRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTA 110
           Y+  H +QT DFV+    ++G  +  + ++ E  +LL+  VDESD   D P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDESD---DFPNSFHAFQTA 65

Query: 111 EAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVH-HKY 169
           E IRK +P++DW HL GL+HDLGKVL    FGE PQWAVVGDTFPVGC    S+V     
Sbjct: 66  EGIRKAHPDKDWFHLVGLLHDLGKVLAL--FGE-PQWAVVGDTFPVGCRPQASVVFCDST 122

Query: 170 FKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYH 229
           F++NPD  +P ++ + G Y    GLD V  SWGHD+Y Y V K NK +LP    + IR+H
Sbjct: 123 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 182

Query: 230 SFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFP 289
           SFY  H    Y+ L +++D+  L W++ FNK+DL        DV+K++PYY  LI+KY P
Sbjct: 183 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDLLP------DVDKLRPYYQGLIDKYCP 236

Query: 290 EKLRW 294
             L W
Sbjct: 237 GILSW 241


>pdb|2IBN|B Chain B, Crystal Structure Of Human Myo-Inositol Oxygenase (Miox)
          Length = 240

 Score =  210 bits (534), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 110/245 (44%), Positives = 148/245 (60%), Gaps = 19/245 (7%)

Query: 51  YRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTA 110
           Y+  H +QT DFV+    ++G  +  + ++ E  +LL+  VDES      P   H  QTA
Sbjct: 9   YKLXHTHQTVDFVRSKHAQFGGFSYKKXTVXEAVDLLDGLVDES------PNSFHAFQTA 62

Query: 111 EAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVH-HKY 169
           E IRK +P++DW HL GL+HDLGKVL    FGE PQWAVVGDTFPVGC    S+V     
Sbjct: 63  EGIRKAHPDKDWFHLVGLLHDLGKVLAL--FGE-PQWAVVGDTFPVGCRPQASVVFCDST 119

Query: 170 FKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYH 229
           F++NPD  +P ++ + G Y    GLD V  SWGHD+Y Y V K NK +LP    + IR+H
Sbjct: 120 FQDNPDLQDPRYSTELGXYQPHCGLDRVLXSWGHDEYXYQVXKFNKFSLPPEAFYXIRFH 179

Query: 230 SFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFP 289
           SFY  H    Y+ L +++D+  L W++ FNK+DL         V+K++PYY  LI+KY P
Sbjct: 180 SFYPWHTGRDYQQLCSQQDLAXLPWVREFNKFDL---------VDKLRPYYQGLIDKYCP 230

Query: 290 EKLRW 294
             L W
Sbjct: 231 GILSW 235


>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
 pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
          Length = 669

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 16/75 (21%)

Query: 236 RADAYKHLMNEEDIE-NLKWLKIF----NKY--------DLYSKSKVRVDVEKVKPYYL- 281
           R DA KH+ + E  E N ++LK+F    N Y        D Y   +V  + +KV PYY  
Sbjct: 363 RLDAVKHIYHSETSEENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSEYDKVAPYYKG 422

Query: 282 --SLIEKYFPEKLRW 294
             +L E  F  +L W
Sbjct: 423 LPALFEFSFWYRLEW 437


>pdb|3K8K|A Chain A, Crystal Structure Of Susg
 pdb|3K8K|B Chain B, Crystal Structure Of Susg
 pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
 pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
          Length = 669

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 16/75 (21%)

Query: 236 RADAYKHLMNEEDIE-NLKWLKIF----NKY--------DLYSKSKVRVDVEKVKPYYL- 281
           R DA KH+ + E  E N ++LK F    N Y        D Y   +V  + +KV PYY  
Sbjct: 363 RLDAVKHIYHSETSEENPRFLKXFYEDXNAYYKQKGHTDDFYXIGEVLSEYDKVAPYYKG 422

Query: 282 --SLIEKYFPEKLRW 294
             +L E  F  +L W
Sbjct: 423 LPALFEFSFWYRLEW 437


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,500,386
Number of Sequences: 62578
Number of extensions: 483372
Number of successful extensions: 1101
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 14
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)