Query 046235
Match_columns 294
No_of_seqs 137 out of 213
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 10:01:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046235.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046235hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05153 DUF706: Family of unk 100.0 1E-144 2E-149 990.3 12.1 250 43-294 4-253 (253)
2 KOG1573 Aldehyde reductase [Ge 100.0 6.7E-96 1E-100 642.2 11.2 188 21-211 15-204 (204)
3 TIGR03276 Phn-HD phosphonate d 97.1 0.00068 1.5E-08 60.8 4.5 145 80-279 4-174 (179)
4 smart00471 HDc Metal dependent 95.5 0.0092 2E-07 44.2 2.2 38 100-137 3-45 (124)
5 TIGR00277 HDIG uncharacterized 93.7 0.071 1.5E-06 38.2 3.1 29 199-229 49-77 (80)
6 PF01966 HD: HD domain; Inter 92.7 0.035 7.5E-07 42.0 0.2 35 103-137 2-42 (122)
7 TIGR00488 putative HD superfam 92.7 0.062 1.3E-06 45.7 1.7 37 100-136 7-47 (158)
8 COG4341 Predicted HD phosphohy 92.0 0.085 1.8E-06 47.9 1.8 105 92-258 21-125 (186)
9 PRK00106 hypothetical protein; 90.3 0.63 1.4E-05 48.2 6.3 86 81-229 332-421 (535)
10 PF08668 HDOD: HDOD domain; I 90.1 0.41 8.9E-06 40.9 4.1 126 70-229 47-193 (196)
11 TIGR01596 cas3_HD CRISPR-assoc 89.1 0.15 3.3E-06 42.4 0.7 34 103-136 2-47 (177)
12 TIGR03319 YmdA_YtgF conserved 87.3 1.4 3.1E-05 45.1 6.4 88 81-231 311-402 (514)
13 cd00077 HDc Metal dependent ph 86.9 0.26 5.5E-06 36.9 0.7 31 197-227 54-88 (145)
14 COG2316 Predicted hydrolase (H 84.9 0.87 1.9E-05 41.9 3.1 55 76-136 28-86 (212)
15 TIGR00295 conserved hypothetic 82.7 2.6 5.7E-05 36.5 5.1 29 201-231 61-89 (164)
16 PRK12705 hypothetical protein; 77.8 4.4 9.6E-05 41.9 5.6 91 81-235 305-399 (508)
17 COG1639 Predicted signal trans 76.5 2.6 5.6E-05 40.8 3.3 131 66-230 65-216 (289)
18 TIGR02621 cas3_GSU0051 CRISPR- 75.8 1.8 3.9E-05 47.2 2.3 36 101-136 675-716 (844)
19 PRK12703 tRNA 2'-O-methylase; 68.1 6.1 0.00013 38.9 3.8 91 71-231 163-258 (339)
20 PRK10885 cca multifunctional t 64.5 3.7 7.9E-05 40.8 1.6 36 100-136 226-261 (409)
21 PRK07152 nadD putative nicotin 61.3 4.7 0.0001 38.6 1.6 29 201-230 258-287 (342)
22 COG1505 Serine proteases of th 60.4 5.4 0.00012 42.5 2.0 137 111-263 414-573 (648)
23 COG2206 c-di-GMP phosphodieste 60.2 6 0.00013 38.0 2.1 50 84-137 134-191 (344)
24 PRK03381 PII uridylyl-transfer 58.6 15 0.00033 39.3 5.0 35 100-134 419-456 (774)
25 PF15608 PELOTA_1: PELOTA RNA 56.7 27 0.00058 29.2 5.1 55 54-112 16-78 (100)
26 COG3481 Predicted HD-superfami 55.8 10 0.00023 36.7 2.9 50 105-155 148-199 (287)
27 TIGR03760 ICE_TraI_Pfluor inte 53.3 9.5 0.00021 35.1 2.1 15 123-137 108-122 (218)
28 PRK12704 phosphodiesterase; Pr 50.3 18 0.0004 37.3 3.8 54 81-136 317-374 (520)
29 PRK13480 3'-5' exoribonuclease 49.1 10 0.00022 36.8 1.7 33 106-138 167-201 (314)
30 PF13328 HD_4: HD domain; PDB: 48.2 16 0.00036 30.6 2.7 48 84-132 2-49 (153)
31 PRK05092 PII uridylyl-transfer 47.8 9.1 0.0002 41.7 1.3 32 103-134 495-544 (931)
32 KOG4481 Uncharacterized conser 44.4 21 0.00047 32.9 2.9 34 73-117 112-145 (194)
33 COG4820 EutJ Ethanolamine util 43.6 12 0.00027 35.7 1.3 79 107-190 187-271 (277)
34 PRK05007 PII uridylyl-transfer 43.1 37 0.0008 37.1 4.9 35 100-134 460-512 (884)
35 COG1418 Predicted HD superfami 39.9 32 0.0007 31.6 3.4 38 101-138 36-77 (222)
36 PRK00227 glnD PII uridylyl-tra 39.5 41 0.00089 36.2 4.5 37 100-136 379-418 (693)
37 PF00307 CH: Calponin homology 39.4 57 0.0012 24.7 4.2 43 249-293 2-47 (108)
38 PF06784 UPF0240: Uncharacteri 39.1 27 0.00058 31.5 2.7 35 73-118 113-147 (179)
39 PRK00275 glnD PII uridylyl-tra 38.7 18 0.0004 39.5 1.9 35 100-134 459-511 (895)
40 PRK04374 PII uridylyl-transfer 38.2 24 0.00052 38.6 2.7 35 100-134 448-500 (869)
41 PRK08071 L-aspartate oxidase; 37.7 37 0.00081 34.2 3.8 72 63-135 415-507 (510)
42 PRK01759 glnD PII uridylyl-tra 36.6 20 0.00044 38.9 1.8 35 100-134 435-487 (854)
43 PTZ00100 DnaJ chaperone protei 35.5 1.1E+02 0.0024 26.1 5.7 53 61-120 41-97 (116)
44 PRK03059 PII uridylyl-transfer 34.0 28 0.00061 37.9 2.4 34 101-134 440-491 (856)
45 TIGR02692 tRNA_CCA_actino tRNA 33.8 34 0.00073 34.3 2.7 37 100-136 257-295 (466)
46 COG2069 CdhD CO dehydrogenase/ 33.6 2.7E+02 0.0058 28.3 8.7 158 4-167 94-298 (403)
47 TIGR03401 cyanamide_fam HD dom 33.0 33 0.0007 31.8 2.3 38 98-135 55-97 (228)
48 COG1023 Gnd Predicted 6-phosph 32.3 62 0.0013 31.8 4.1 62 76-150 178-251 (300)
49 COG3437 Response regulator con 32.1 68 0.0015 32.3 4.5 53 80-136 168-227 (360)
50 KOG0668 Casein kinase II, alph 31.9 25 0.00054 34.5 1.4 116 145-285 208-330 (338)
51 KOG2155 Tubulin-tyrosine ligas 31.5 26 0.00057 36.7 1.6 18 110-127 373-390 (631)
52 PRK13298 tRNA CCA-pyrophosphor 29.7 45 0.00098 33.8 2.9 35 101-136 228-262 (417)
53 PF12477 TraW_N: Sex factor F 28.5 20 0.00044 24.1 0.1 12 146-157 20-31 (31)
54 TIGR01693 UTase_glnD [Protein- 27.7 21 0.00045 38.4 0.1 34 101-134 428-479 (850)
55 TIGR02578 cas_TM1811_Csm1 CRIS 27.1 23 0.00049 37.6 0.3 14 124-137 2-15 (648)
56 COG0647 NagD Predicted sugar p 26.2 1.8E+02 0.0038 27.9 6.0 112 59-193 32-171 (269)
57 PRK14064 exodeoxyribonuclease 25.9 1.2E+02 0.0027 23.8 4.1 42 75-116 3-45 (75)
58 PF04986 Y2_Tnp: Putative tran 24.9 24 0.00053 31.2 0.0 33 197-233 145-177 (183)
59 PF05964 FYRN: F/Y-rich N-term 24.8 28 0.0006 25.4 0.3 26 128-158 5-30 (54)
60 PF03656 Pam16: Pam16; InterP 23.7 28 0.0006 30.0 0.1 32 76-109 53-85 (127)
61 COG1713 Predicted HD superfami 23.4 64 0.0014 29.7 2.4 37 100-136 16-56 (187)
62 TIGR00691 spoT_relA (p)ppGpp s 23.3 76 0.0017 33.9 3.3 34 98-132 16-49 (683)
63 PF07514 TraI_2: Putative heli 22.1 32 0.0007 33.4 0.3 36 102-137 67-121 (327)
64 PF02910 Succ_DH_flav_C: Fumar 21.9 82 0.0018 26.1 2.6 52 64-115 5-69 (129)
65 PF00631 G-gamma: GGL domain; 21.7 95 0.0021 23.3 2.7 24 74-98 19-42 (68)
66 PF07606 DUF1569: Protein of u 20.9 1.6E+02 0.0035 25.4 4.2 55 79-138 11-71 (152)
67 COG1896 Predicted hydrolases o 20.6 63 0.0014 29.2 1.8 37 100-136 32-77 (193)
68 smart00735 ZM ZASP-like motif. 20.6 55 0.0012 20.8 1.0 15 179-193 5-19 (26)
69 PRK14067 exodeoxyribonuclease 20.4 1.6E+02 0.0034 23.5 3.8 41 75-115 4-45 (80)
No 1
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=100.00 E-value=1e-144 Score=990.35 Aligned_cols=250 Identities=67% Similarity=1.155 Sum_probs=201.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCc
Q 046235 43 RQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDW 122 (294)
Q Consensus 43 ~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW 122 (294)
+++||++|||+||++||||||++||++|++++|++|||||||++||+||||||||+|+|||+||||||||||+|||+|||
T Consensus 4 ~~~~V~~~Y~~~h~~QTv~fv~~~~~~~~~~~~~~Mti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW 83 (253)
T PF05153_consen 4 ACDRVKEFYRLQHTNQTVDFVKKMRAKYLKFDHAEMTIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDW 83 (253)
T ss_dssp -HHHHHHHHHHHHCC--HHHHHHHHHHHTT--SEEE-HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HH
T ss_pred HhHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCcceeeHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcch
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccC
Q 046235 123 LHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWG 202 (294)
Q Consensus 123 ~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWG 202 (294)
||||||||||||||++ ||++|||+||||||||||+|+++|||+++|++|||.+||+||||+|||+||||||||+||||
T Consensus 84 ~~LtGLiHDLGKvl~~--~~~e~QW~vvGDTfpVGC~f~~~iv~~e~f~~NpD~~~~~YnTk~GiY~~~CGLdnv~msWg 161 (253)
T PF05153_consen 84 MQLTGLIHDLGKVLAL--FGGEPQWAVVGDTFPVGCAFSESIVFPEFFKDNPDSKNPRYNTKYGIYEPNCGLDNVMMSWG 161 (253)
T ss_dssp HHHHHHHTTGGGHHHH--C-T--GGGTSS---BSSS---TTSTTCCC-TT-GGGCSTTTSSSSTT--TT--GGGS-B-SS
T ss_pred hhheehhccchhhhhh--hcCCCCceeecCceeEecccCccccChhhHhhCCCCCCccccCCCCccCCCCCccceeecCC
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHHHHHHHHHcCCccccccCCCCCChhhhhhhhHH
Q 046235 203 HDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLS 282 (294)
Q Consensus 203 HDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~ 282 (294)
||||||+|||+|+||||+|||+|||||||||||++|+|+||||++|.+||+||++||||||||||+++||||+|||||++
T Consensus 162 HDEYlY~Vlk~n~~tLP~eaL~mIRyhSfypwH~~~~Y~~L~~~~D~~~l~wv~~Fn~~dLYSK~~~~pdve~l~PYY~~ 241 (253)
T PF05153_consen 162 HDEYLYQVLKHNKSTLPEEALYMIRYHSFYPWHREGAYDHLMNEEDEEMLKWVKEFNKYDLYSKSDEPPDVEELKPYYQS 241 (253)
T ss_dssp HHHHHHHHHHHCT----HHHHHHHHHTT-HHHHTTS--TTT--HHHHHHHHHHHHHHHHHHHT--SS---HCCCHHHHHH
T ss_pred chHHHHHHHHcccCccCHHHHHHHHHhccccccccchhhHhhccCcHHHHHHHHHhCCcceeeCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCC
Q 046235 283 LIEKYFPEKLRW 294 (294)
Q Consensus 283 LidKY~P~~l~W 294 (294)
|||||||++|+|
T Consensus 242 LidKy~P~~l~W 253 (253)
T PF05153_consen 242 LIDKYFPGKLKW 253 (253)
T ss_dssp HHHHHS-S-EEE
T ss_pred HHHHHCCCcCCC
Confidence 999999999998
No 2
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=100.00 E-value=6.7e-96 Score=642.20 Aligned_cols=188 Identities=73% Similarity=1.243 Sum_probs=182.8
Q ss_pred ccCCCCCCccccccCCccc-cchhhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhhcCCCCCCC
Q 046235 21 GFTVPETNSFGQTFRDYGV-ESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLD 99 (294)
Q Consensus 21 ~f~~p~~~~~~~~fR~Y~~-~~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSDPD~d 99 (294)
.|.+|++++++.+||+|++ ++++++||+.|||.||+|||||||++||++|+||++.+||||||||+||++|||||||+|
T Consensus 15 ~~~~pe~~a~g~~fRdY~dt~~p~q~rV~~~Y~~qH~~QTvDFVk~mr~~~gkf~~~kM~i~ec~ell~~~vDESDPDlD 94 (204)
T KOG1573|consen 15 PFVAPEVNADGRQFRDYDDTEDPLQKRVRTTYRTQHTNQTVDFVKKMRAEYGKFDKMKMTIWECCELLNEVVDESDPDLD 94 (204)
T ss_pred CCCChhhhcchhhhccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccchhheeHHHHHHHHHhhhcccCCCCc
Confidence 4899999999999999964 688999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccc-cccccCCCCCC
Q 046235 100 EPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHH-KYFKENPDYNN 178 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~-e~F~~NPD~~~ 178 (294)
+|||+|||||||+||++||+.||||||||||||||||.+ ||+||||||||||||||+|..||||. ++|..|||.+|
T Consensus 95 epni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDLGKvl~f---~GepQWAVvGDTfpVGC~~~~s~V~~d~~F~~NpD~~n 171 (204)
T KOG1573|consen 95 EPNIQHALQTAEAIRKDYPDEDWLHLTALIHDLGKVLAF---GGEPQWAVVGDTFPVGCAFDASNVHHDKYFDGNPDINN 171 (204)
T ss_pred hHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHh---cCCcceeeecCcccccccccccceechhhccCCCCCCC
Confidence 999999999999999999999999999999999999954 89999999999999999999999995 99999999999
Q ss_pred ccCCcCCCccCCCCCccccccccCcchHHHHHH
Q 046235 179 PAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVA 211 (294)
Q Consensus 179 p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vl 211 (294)
|+|||+.|||+|+||||||+||||||||||+|+
T Consensus 172 p~YnT~~GiYqe~CGldnvlMsWgHDeYMY~V~ 204 (204)
T KOG1573|consen 172 PKYNTKLGIYQEGCGLDNVLMSWGHDEYMYLVA 204 (204)
T ss_pred cccccccccccCCCChhHHHhhcccccceeecC
Confidence 999999999999999999999999999999984
No 3
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.07 E-value=0.00068 Score=60.82 Aligned_cols=145 Identities=19% Similarity=0.229 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhcccCCCCCCCceeecCceeeecc
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCA 159 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~ 159 (294)
|-+-..++.......----..||++|+||||...+++ |-.+=+.+.+|+||+|.++.- .+ ++
T Consensus 4 ~~~i~~l~~~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~-Gad~elvvAALLHDIGhll~~--~~---------~~------ 65 (179)
T TIGR03276 4 LDEIFALFDEHGARQYGGEAVSQLEHALQCAQLAEAA-GADDELIVAAFLHDIGHLLAD--EG---------AT------ 65 (179)
T ss_pred HHHHHHHHHhcCccccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhcchhhhc--cc---------cc------
Confidence 3344444444444432235699999999999999998 777767999999999998732 11 11
Q ss_pred cCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhcc----ccccc
Q 046235 160 FDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHS----FYALH 235 (294)
Q Consensus 160 f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHS----FYpwH 235 (294)
.+..|+ .+.|++.==..|+. .+|++...+||.|. ++---
T Consensus 66 ----------------------~~~~g~------------~~~He~iga~~Lr~---~F~~~V~~lV~~Hv~aKryl~a~ 108 (179)
T TIGR03276 66 ----------------------PMGRGG------------DDHHEELAADYLRE---LFSPSVTEPIRLHVQAKRYLCAV 108 (179)
T ss_pred ----------------------ccccCC------------CccHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHcc
Confidence 111222 23588888888886 39999999999985 11111
Q ss_pred cccccccc--------------cChhhHHHHH------HHHHcCCccccccCCC--CCChhhhhhh
Q 046235 236 RADAYKHL--------------MNEEDIENLK------WLKIFNKYDLYSKSKV--RVDVEKVKPY 279 (294)
Q Consensus 236 ~~gaY~hL--------------~n~~D~~~l~------wV~~Fn~yDLYSKs~~--~pdve~lkPY 279 (294)
..+-|.+| |+++..+-++ -.-.|-+||==+|.+. .|+++..+|.
T Consensus 109 ~p~Y~~~LS~aS~~sL~~QGG~~~~~e~~~f~~~p~~~dav~lR~wDd~ak~~~~~~~~l~~~~~~ 174 (179)
T TIGR03276 109 DPAYAESLSPASRRSLELQGGPFTAAEADAFERDPHAADAIRLRRWDDLAKDPGVPTPDLDHFMPL 174 (179)
T ss_pred ChHHHHHcCHHHHhHHHHcCCCCCHHHHHHHHhCccHHHHHHHHHcchhccCCCCCCCCHHHHHHH
Confidence 12223455 6666544332 2233678888888877 4666654443
No 4
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.53 E-value=0.0092 Score=44.23 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHHHhh---CC--CCCchhhhhhhccccchhc
Q 046235 100 EPQIEHLLQTAEAIRKD---YP--NEDWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d---~p--~pdW~qLtGliHDLGKll~ 137 (294)
.+.++|.+++|..++.- .+ +.+.+-++||+||+||...
T Consensus 3 ~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 45678888887776533 11 4577889999999999884
No 5
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=93.71 E-value=0.071 Score=38.25 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=23.5
Q ss_pred cccCcchHHHHHHHhCCCCCCchhhhhhhhc
Q 046235 199 MSWGHDDYMYLVAKENKTTLPSAGLFIIRYH 229 (294)
Q Consensus 199 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH 229 (294)
...+|.+.=..+++. ..+|++...+||+|
T Consensus 49 ~~~~H~~~g~~~l~~--~~~~~~~~~~I~~H 77 (80)
T TIGR00277 49 IFESHAVVGAEIARK--YGEPLEVIDIIAEH 77 (80)
T ss_pred HHHchHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 345777777888875 47999999999998
No 6
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=92.73 E-value=0.035 Score=42.03 Aligned_cols=35 Identities=31% Similarity=0.569 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHH---hhCC---CCCchhhhhhhccccchhc
Q 046235 103 IEHLLQTAEAIR---KDYP---NEDWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 103 i~H~lQTAEaiR---~d~p---~pdW~qLtGliHDLGKll~ 137 (294)
++|.+.+|+.++ +..+ +.+++.++||+||+||...
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~~ 42 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIPT 42 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHST
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCCC
Confidence 467776665544 3334 6688999999999999983
No 7
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=92.70 E-value=0.062 Score=45.66 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHHh----hCCCCCchhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEAIRK----DYPNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~----d~p~pdW~qLtGliHDLGKll 136 (294)
..-.+|.+.+|...|+ -.++++...++||+||+||.+
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk~~ 47 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAKFL 47 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhccC
Confidence 3457899988876543 226789999999999999953
No 8
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=92.05 E-value=0.085 Score=47.87 Aligned_cols=105 Identities=26% Similarity=0.326 Sum_probs=73.1
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccc
Q 046235 92 DESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFK 171 (294)
Q Consensus 92 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~ 171 (294)
|++=----++|.+|+||+|-..-+| |-++=+.-..|+||+|-+..= +| +|..
T Consensus 21 ~e~y~ge~VTq~eHaLQ~AtlAerd-Ga~~~lVaaALLHDiGhl~~~--~g---------~~ps---------------- 72 (186)
T COG4341 21 DEGYSGEPVTQLEHALQCATLAERD-GADTALVAAALLHDIGHLYAD--YG---------HTPS---------------- 72 (186)
T ss_pred ccccccCcchhhhhHHHHhHHHHhc-CCcHHHHHHHHHHhHHHHhhh--cC---------CCcc----------------
Confidence 3333334578999999999999999 888877888999999999832 42 1211
Q ss_pred cCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHHH
Q 046235 172 ENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIEN 251 (294)
Q Consensus 172 ~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~ 251 (294)
.-|+|.- =|+|.==.||.. -.|+-.-.-||.| =|+=++||+ -|.+-
T Consensus 73 -------------------~~~i~d~----~hee~~~~vL~~---~f~~~v~e~vrlH-------v~akR~lca-~~p~Y 118 (186)
T COG4341 73 -------------------AAGIDDP----FHEEFATPVLRK---LFPPFVREPVRLH-------VGAKRYLCA-VDPAY 118 (186)
T ss_pred -------------------ccccchh----HHHHHhHHHHHH---hCcHHHHHHHHHH-------Hhhhhhhhc-cChHH
Confidence 1233333 367777778866 4788888889988 678888888 56555
Q ss_pred HHHHHHc
Q 046235 252 LKWLKIF 258 (294)
Q Consensus 252 l~wV~~F 258 (294)
..=+..|
T Consensus 119 f~~ls~a 125 (186)
T COG4341 119 FDDLSPA 125 (186)
T ss_pred HhhcCHH
Confidence 4433333
No 9
>PRK00106 hypothetical protein; Provisional
Probab=90.32 E-value=0.63 Score=48.18 Aligned_cols=86 Identities=13% Similarity=0.143 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hC-CCCCchhhhhhhccccchhcccCCCCCCCceeecCceee
Q 046235 81 WECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK---DY-PNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPV 156 (294)
Q Consensus 81 ~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~---d~-p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpV 156 (294)
.|++.+|-.|-.-..-+.. ...|.+.+|...+. .+ .++++.-+.||+||+||++- .
T Consensus 332 ~e~~~~lg~l~~r~sy~qn--l~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~v~-----~------------- 391 (535)
T PRK00106 332 PDLIKIMGRLQFRTSYGQN--VLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKAID-----R------------- 391 (535)
T ss_pred HHHHHHHHHHhhhccCCCc--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCccC-----c-------------
Confidence 5788888877554443332 47999999887542 22 46789999999999999851 0
Q ss_pred ecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhc
Q 046235 157 GCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYH 229 (294)
Q Consensus 157 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyH 229 (294)
+ . ..+|.+.=+.+++.. .+|++-+.+|++|
T Consensus 392 -----------e----------------------~--------~g~Ha~iGa~ll~~~--~~~~~v~~aI~~H 421 (535)
T PRK00106 392 -----------E----------------------V--------EGSHVEIGMEFARKY--KEHPVVVNTIASH 421 (535)
T ss_pred -----------c----------------------c--------cCChHHHHHHHHHHc--CCCHHHHHHHHHh
Confidence 0 0 115888889999865 4899999999998
No 10
>PF08668 HDOD: HDOD domain; InterPro: IPR013976 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These members appear to be involved in the nucleic acid metabolism and signal transduction or possibly other functions and are restricted to bacteria, primarily the proteobacteria. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; PDB: 1VQR_D 3LJX_A 3P3Q_B 3MEM_A 3M1T_A 3HC1_A 3I7A_A.
Probab=90.10 E-value=0.41 Score=40.90 Aligned_cols=126 Identities=24% Similarity=0.296 Sum_probs=72.3
Q ss_pred hcCCCCccccHHHHHHHH--------------HhhhcCCC-CCCCc-hHHHHHHHHHHHHHhh-----CCCCCchhhhhh
Q 046235 70 YGKLNRVEMSIWECCELL--------------NEFVDESD-PDLDE-PQIEHLLQTAEAIRKD-----YPNEDWLHLTGL 128 (294)
Q Consensus 70 ~~~~~~~~MsI~EA~e~L--------------n~LvDeSD-PD~dl-~qi~H~lQTAEaiR~d-----~p~pdW~qLtGl 128 (294)
+.++.+.-.||.+|+..| .+.+..+. ....+ .-..|.+.+|..+++- ..+||-.-++||
T Consensus 47 ~~~~~~~i~sl~~Ai~~LG~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~a~~la~~~~~~~~~~a~~~gL 126 (196)
T PF08668_consen 47 YFGLRRPISSLEQAISRLGLDRIRNLALALSLRSLFPSSPPYQFNLERFWRHSLAAAAIARRLARELGFDDPDEAYLAGL 126 (196)
T ss_dssp TTTSTST--SHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCTTSCHHHHHHHHHHHHHHHHHHHHHCTCCHHHHHHHHHH
T ss_pred hcCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHHHccccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334556667999999877 12222222 11222 3348999988887632 234588999999
Q ss_pred hccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHH
Q 046235 129 IHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMY 208 (294)
Q Consensus 129 iHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY 208 (294)
+||+|+++++..+ |+. |--++. ..+.++- +.. -.++-.+.+.|.|==.
T Consensus 127 L~~iG~l~l~~~~---~~~------~~~~~~---------~~~~~~~---~~~-----------~~e~~~~g~~h~~lg~ 174 (196)
T PF08668_consen 127 LHDIGKLLLLSLF---PEY------YEEILQ---------EVKQEPE---SRE-----------EAERELFGVTHAELGA 174 (196)
T ss_dssp HTTHHHHHHHHHC---HHH------HHHHHH---------HHHHHCT---HHH-----------HHHHHHHSSHHHHHHH
T ss_pred HHHHhHHHHHHHh---HHH------HHHHHH---------HHHcCCC---CHH-----------HHHHHHHcCCHHHHHH
Confidence 9999999976222 111 100000 0000000 111 2344566667888888
Q ss_pred HHHHhCCCCCCchhhhhhhhc
Q 046235 209 LVAKENKTTLPSAGLFIIRYH 229 (294)
Q Consensus 209 ~Vlk~n~stLP~eaL~mIRyH 229 (294)
.+++.- .||++-...||+|
T Consensus 175 ~l~~~W--~lP~~i~~~i~~h 193 (196)
T PF08668_consen 175 ALLRKW--GLPEEIVEAIRHH 193 (196)
T ss_dssp HHHHHT--T--HHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHH
Confidence 888864 8999999999998
No 11
>TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD. CRISPR/Cas systems are widespread, mobile systems for host defense against invasive elements such as phage. In these systems, Cas3 designates one of the core proteins shared widely by multiple types of CRISPR/Cas system. This model represents an HD-like endonuclease that occurs either separately or as the N-terminal region of Cas3, the helicase-containing CRISPR-associated protein.
Probab=89.13 E-value=0.15 Score=42.39 Aligned_cols=34 Identities=38% Similarity=0.510 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHh----------hCC--CCCchhhhhhhccccchh
Q 046235 103 IEHLLQTAEAIRK----------DYP--NEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 103 i~H~lQTAEaiR~----------d~p--~pdW~qLtGliHDLGKll 136 (294)
.+|++.||+..+. ..| .++++-+.|++||+||+-
T Consensus 2 ~~H~~~v~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~lHDiGK~~ 47 (177)
T TIGR01596 2 NEHLLDVAAVAEKLKNLDIVIADLIGKLLRELLDLLALLHDIGKIN 47 (177)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhHHHHHHHHHHHHccCccCC
Confidence 3677777776553 223 358999999999999976
No 12
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.27 E-value=1.4 Score=45.10 Aligned_cols=88 Identities=18% Similarity=0.115 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh----hCCCCCchhhhhhhccccchhcccCCCCCCCceeecCceee
Q 046235 81 WECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK----DYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPV 156 (294)
Q Consensus 81 ~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~----d~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpV 156 (294)
.|++.+|..|---+....+ ...|.+.+|...+. --.+++...+.||+||+||++. +
T Consensus 311 ~~~~~~l~~l~~r~~~~~~--~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK~~~---------~--------- 370 (514)
T TIGR03319 311 PELIKLLGRLKFRTSYGQN--VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGKAVD---------H--------- 370 (514)
T ss_pred HHHHHHHHHhhccccCCcc--HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCcccc---------h---------
Confidence 5677777775433222222 46799888776442 2246788889999999999740 0
Q ss_pred ecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhccc
Q 046235 157 GCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSF 231 (294)
Q Consensus 157 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 231 (294)
+ + -.+|.++=+.+++. ..+|++...+|++|.-
T Consensus 371 -----------e------------------~------------~~~H~~~Ga~ll~~--~~~~~~V~~aI~~HH~ 402 (514)
T TIGR03319 371 -----------E------------------V------------EGSHVEIGAELAKK--YKESPEVVNAIAAHHG 402 (514)
T ss_pred -----------h------------------h------------cccHHHHHHHHHHH--cCCCHHHHHHHHHhCC
Confidence 0 0 02588888888976 4689999999999963
No 13
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=86.93 E-value=0.26 Score=36.93 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=21.6
Q ss_pred cccccCcchHHHHHHHh----CCCCCCchhhhhhh
Q 046235 197 VFMSWGHDDYMYLVAKE----NKTTLPSAGLFIIR 227 (294)
Q Consensus 197 V~mSWGHDEYlY~Vlk~----n~stLP~eaL~mIR 227 (294)
....++|..+=+.+++. ....++.+....+.
T Consensus 54 ~~~~~~h~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (145)
T cd00077 54 SELEKDHAIVGAEILRELLLEEVIKLIDELILAVD 88 (145)
T ss_pred HHHHHhhHHHHHHHHHHhhhcccccccHHHHHHHH
Confidence 44667899999999864 45666766655555
No 14
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=84.93 E-value=0.87 Score=41.88 Aligned_cols=55 Identities=31% Similarity=0.433 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 046235 76 VEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK---DYP-NEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 76 ~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 136 (294)
+.||-+||+++|.+.|-+ -+.+.|++.++..+|. ..| +..=--++||+||+--=+
T Consensus 28 ~~i~r~ea~eLlk~hv~~------e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~ 86 (212)
T COG2316 28 AAINRDEAYELLKEHVPS------ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYEL 86 (212)
T ss_pred HhhcchHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHh
Confidence 568889999999998854 5679999999998883 333 222235899999975433
No 15
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=82.74 E-value=2.6 Score=36.47 Aligned_cols=29 Identities=10% Similarity=-0.110 Sum_probs=24.1
Q ss_pred cCcchHHHHHHHhCCCCCCchhhhhhhhccc
Q 046235 201 WGHDDYMYLVAKENKTTLPSAGLFIIRYHSF 231 (294)
Q Consensus 201 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 231 (294)
+.|.+.=|.+|+. ..+|++.+.+|+.|..
T Consensus 61 ~~H~~~G~~iL~~--~g~~~~i~~iI~~H~~ 89 (164)
T TIGR00295 61 FEHFVKGAEILRK--EGVDEKIVRIAERHFG 89 (164)
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHHHhC
Confidence 3799999999986 4789999999998754
No 16
>PRK12705 hypothetical protein; Provisional
Probab=77.76 E-value=4.4 Score=41.88 Aligned_cols=91 Identities=18% Similarity=0.126 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh----CCCCCchhhhhhhccccchhcccCCCCCCCceeecCceee
Q 046235 81 WECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKD----YPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPV 156 (294)
Q Consensus 81 ~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d----~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpV 156 (294)
.+++..|-.|---+.+..+ .+.|.+.+|..++.- .-+++-...+||+||+||+.- +.
T Consensus 305 ~~li~~Lg~L~~R~sygqn--vl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ie---------~e-------- 365 (508)
T PRK12705 305 PGLVRLLGRLYFRTSYGQN--VLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKSID---------RE-------- 365 (508)
T ss_pred HHHHHHHHHHhhcccCCch--HHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCcch---------hh--------
Confidence 3455555544222222222 579999988866522 234566778999999999630 00
Q ss_pred ecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhccccccc
Q 046235 157 GCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALH 235 (294)
Q Consensus 157 GC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH 235 (294)
+.-.|.+.=+.+++.. .+|++...+|++|.- ||.
T Consensus 366 ------------------------------------------~~~~H~~iGaeLlkk~--~~p~~Vv~aI~~HHe-~~~ 399 (508)
T PRK12705 366 ------------------------------------------SDGNHVEIGAELARKF--NEPDEVINAIASHHN-KVN 399 (508)
T ss_pred ------------------------------------------hcccHHHHHHHHHHhc--CCCHHHHHHHHHhCC-CCC
Confidence 0126888888999864 699999999999963 444
No 17
>COG1639 Predicted signal transduction protein [Signal transduction mechanisms]
Probab=76.48 E-value=2.6 Score=40.83 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=79.2
Q ss_pred HHHHhcCCCCccccHHHHHHHH-----Hhhhc-------CCCCCCCchHH----HHHHHHHHHHH---hhC--CCCCchh
Q 046235 66 MREEYGKLNRVEMSIWECCELL-----NEFVD-------ESDPDLDEPQI----EHLLQTAEAIR---KDY--PNEDWLH 124 (294)
Q Consensus 66 ~~~~~~~~~~~~MsI~EA~e~L-----n~LvD-------eSDPD~dl~qi----~H~lQTAEaiR---~d~--p~pdW~q 124 (294)
+-.-|..+.+.--||-||+..| -+||= -+.|+..--+. ++++.||-.++ ++. +.++=.-
T Consensus 65 ANS~yfg~~~~i~tl~~Ai~rLG~~~v~NLv~a~a~~~~~~~~~~~~~~~~~~w~~a~~~A~ia~~La~~~g~~~~~~~y 144 (289)
T COG1639 65 ANSPYFGFPREITTLNEAIVRLGIGLVINLVLALAEQAIQSVNSSSAEDRQLFWDTAIETAMIAEGLARALGRADSDEAY 144 (289)
T ss_pred hcchhcCCCCccCcHHHHHHHHhHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 3456778889999999999876 12221 12232222222 45555554443 343 4567788
Q ss_pred hhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcc
Q 046235 125 LTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHD 204 (294)
Q Consensus 125 LtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHD 204 (294)
++||+|.+|+|+++..| |+|.-++ |. .-..|+|-... +|-.+--.+|-
T Consensus 145 ~~gLLh~lG~l~ll~~~---~~~~~~~------~~---------~~~~~~~~~~~--------------~~e~~~i~~h~ 192 (289)
T COG1639 145 TAGLLHNLGILVLLTDF---PDHCELL------DY---------LLALNNDELLA--------------LDEELGIFGHA 192 (289)
T ss_pred HHHHHHHccHHHHHHHh---HHHHHHH------HH---------HHHhccCcccc--------------hHHHhccccch
Confidence 99999999999988444 4553332 22 22234443221 12222223478
Q ss_pred hHHHHHHHhCCCCCCchhhhhhhhcc
Q 046235 205 DYMYLVAKENKTTLPSAGLFIIRYHS 230 (294)
Q Consensus 205 EYlY~Vlk~n~stLP~eaL~mIRyHS 230 (294)
+--+.+++.- .+|.+-...||+|-
T Consensus 193 ~Iga~llr~W--~fp~~l~e~i~~~~ 216 (289)
T COG1639 193 SIGAYLLRRW--NFPDDLIEAIRFHH 216 (289)
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHhh
Confidence 8888888875 89999999999983
No 18
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=75.80 E-value=1.8 Score=47.21 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHH---hhCCCCCc---hhhhhhhccccchh
Q 046235 101 PQIEHLLQTAEAIR---KDYPNEDW---LHLTGLIHDLGKVL 136 (294)
Q Consensus 101 ~qi~H~lQTAEaiR---~d~p~pdW---~qLtGliHDLGKll 136 (294)
+.-+|+..+|+..+ +.+|-++| ..+.|+.|||||.-
T Consensus 675 ~L~eHl~~va~lA~~fa~~~gl~~~~~~~~laGllHDlGK~~ 716 (844)
T TIGR02621 675 ALSDHLDNVFEVAKNFVAKLGLGDLDKAVRQAARLHDLGKQR 716 (844)
T ss_pred EHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccccCC
Confidence 34589998888776 55788888 57999999999976
No 19
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=68.15 E-value=6.1 Score=38.94 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=62.7
Q ss_pred cCCCCccccHHHHHHHHHhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCC-CCCchhhhhhhccccchhcccCCCCCC
Q 046235 71 GKLNRVEMSIWECCELLNEF-VDESDPDLDEPQIEHLLQTAEAIR---KDYP-NEDWLHLTGLIHDLGKVLLHPDFGELP 145 (294)
Q Consensus 71 ~~~~~~~MsI~EA~e~Ln~L-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p-~pdW~qLtGliHDLGKll~l~~~g~~p 145 (294)
+|.....++.-||+++|.+. .++ ..+.|.++.|...+ +.++ +.+=+.+.||+||+||....
T Consensus 163 gk~v~~ip~~ee~l~Ll~k~~~~e-------~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~------- 228 (339)
T PRK12703 163 GKLVKIIPDEDQCLDLLKKYGASD-------LLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTN------- 228 (339)
T ss_pred cccccCCCCHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccccccc-------
Confidence 44445678999999999987 222 24888887654433 3222 44555568999999996410
Q ss_pred CceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhh
Q 046235 146 QWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFI 225 (294)
Q Consensus 146 QW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~m 225 (294)
. ..|...=+++|+. ..+|++-+..
T Consensus 229 -----------------------------~-------------------------~~H~~~Ga~iL~e--~G~~e~i~~i 252 (339)
T PRK12703 229 -----------------------------G-------------------------IDHAVAGAEILRK--ENIDDRVVSI 252 (339)
T ss_pred -----------------------------C-------------------------CCHHHHHHHHHHH--CCCCHHHHHH
Confidence 0 1477777889975 4778999999
Q ss_pred hhhccc
Q 046235 226 IRYHSF 231 (294)
Q Consensus 226 IRyHSF 231 (294)
|+.|.-
T Consensus 253 Ie~H~g 258 (339)
T PRK12703 253 VERHIG 258 (339)
T ss_pred HHHHhc
Confidence 999873
No 20
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=64.53 E-value=3.7 Score=40.80 Aligned_cols=36 Identities=28% Similarity=0.190 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll 136 (294)
.+..+|.+.+-+.+.+- +...-+-++.|+||+||-.
T Consensus 226 ~dv~~Htl~~l~~~~~l-~~~l~lr~AaLlHDlGK~~ 261 (409)
T PRK10885 226 IDTGIHTLMVLDQAAKL-SPSLDVRFAALCHDLGKGL 261 (409)
T ss_pred CcHHHHHHHHHHHHHhc-CCCHHHHHHHHhccccCCC
Confidence 45578988888777654 4445688999999999965
No 21
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=61.31 E-value=4.7 Score=38.59 Aligned_cols=29 Identities=24% Similarity=0.027 Sum_probs=23.7
Q ss_pred cCcchHHHHHHHhCCCCCC-chhhhhhhhcc
Q 046235 201 WGHDDYMYLVAKENKTTLP-SAGLFIIRYHS 230 (294)
Q Consensus 201 WGHDEYlY~Vlk~n~stLP-~eaL~mIRyHS 230 (294)
..|.+.=+.++++ ...+| ++.+..||+|-
T Consensus 258 ~~H~~~Ga~ll~~-~~~~p~~~i~~aI~~Hh 287 (342)
T PRK07152 258 VLHQYVGALWLKH-VYGIDDEEILNAIRNHT 287 (342)
T ss_pred HHhHHHHHHHHHH-HcCCCcHHHHHHHHhcc
Confidence 3699999999986 34677 68999999995
No 22
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=60.42 E-value=5.4 Score=42.48 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=82.9
Q ss_pred HHHHhhCCCCCchhhhhhhccccchhcccCC-CCCCCceeecCceeeec----------------ccCCCcccccccccC
Q 046235 111 EAIRKDYPNEDWLHLTGLIHDLGKVLLHPDF-GELPQWAVVGDTFPVGC----------------AFDESIVHHKYFKEN 173 (294)
Q Consensus 111 EaiR~d~p~pdW~qLtGliHDLGKll~l~~~-g~~pQW~vvGDTfpVGC----------------~f~~~iv~~e~F~~N 173 (294)
..+.+| +.|-|+.=-|= . .|-+.|.| +.---|.=-|-+|++.| +.....||.+||+--
T Consensus 414 K~~~~d-~~pTll~aYGG---F-~vsltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 414 KGAKKD-ENPTLLYAYGG---F-NISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred cCCcCC-CCceEEEeccc---c-ccccCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 445566 66666544331 0 12234554 22335766777787755 446788999999988
Q ss_pred CCCCCccCCc--CCCccCC-CCCcc-ccccccCcchHHHHHHHhCCCCCCchhhhhhhhccccccccccc--cccccChh
Q 046235 174 PDYNNPAFNA--KYGAYSE-GRGLD-NVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADA--YKHLMNEE 247 (294)
Q Consensus 174 PD~~~p~YnT--~~GiY~p-~CGLd-nV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~ga--Y~hL~n~~ 247 (294)
-|-....|.| +.||.-. |-||= -|.|. .+.|=+=-++- =-.-|.|||||-|++ |+ =.+-=|++
T Consensus 489 edLi~rgitspe~lgi~GgSNGGLLvg~alT-QrPelfgA~v~------evPllDMlRYh~l~a----G~sW~~EYG~Pd 557 (648)
T COG1505 489 EDLIKRGITSPEKLGIQGGSNGGLLVGAALT-QRPELFGAAVC------EVPLLDMLRYHLLTA----GSSWIAEYGNPD 557 (648)
T ss_pred HHHHHhCCCCHHHhhhccCCCCceEEEeeec-cChhhhCceee------ccchhhhhhhccccc----chhhHhhcCCCC
Confidence 8887777766 5787754 44442 22221 33342222221 113589999999975 22 13345888
Q ss_pred hHHHHHHHHHcCCccc
Q 046235 248 DIENLKWLKIFNKYDL 263 (294)
Q Consensus 248 D~~~l~wV~~Fn~yDL 263 (294)
|.+.++|+.++.||-=
T Consensus 558 ~P~d~~~l~~YSPy~n 573 (648)
T COG1505 558 DPEDRAFLLAYSPYHN 573 (648)
T ss_pred CHHHHHHHHhcCchhc
Confidence 9999999999999853
No 23
>COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]
Probab=60.22 E-value=6 Score=38.00 Aligned_cols=50 Identities=28% Similarity=0.346 Sum_probs=33.6
Q ss_pred HHHHHhh-hcCCCCCCCchHHHHHHHHHHHHH---hhCCCC----Cchhhhhhhccccchhc
Q 046235 84 CELLNEF-VDESDPDLDEPQIEHLLQTAEAIR---KDYPNE----DWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 84 ~e~Ln~L-vDeSDPD~dl~qi~H~lQTAEaiR---~d~p~p----dW~qLtGliHDLGKll~ 137 (294)
...+... ++..|+.| -.|-..+|+-.+ +.-|-+ ..+-+.|++||+||+-.
T Consensus 134 ~~~~~~~~~~~kd~~t----~~Hs~~va~~a~~ia~~lgl~~~~i~~l~~aalLHDIGKi~i 191 (344)
T COG2206 134 LVALARGDIKAKDDYT----YGHSVRVAELAEAIAKKLGLSEEKIEELALAGLLHDIGKIGI 191 (344)
T ss_pred HHHHHHhcccccchhH----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 3334444 77777777 678888776544 333433 35678999999999984
No 24
>PRK03381 PII uridylyl-transferase; Provisional
Probab=58.58 E-value=15 Score=39.32 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHH---HhhCCCCCchhhhhhhccccc
Q 046235 100 EPQIEHLLQTAEAI---RKDYPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 100 l~qi~H~lQTAEai---R~d~p~pdW~qLtGliHDLGK 134 (294)
.+.-+|.+.|-+.+ ...-..|+.+-|++|+||+||
T Consensus 419 ytVd~Htl~~l~~~~~~~~~~~~~~lL~lAaLlHDiGK 456 (774)
T PRK03381 419 WTVDRHLVETAVRAAALTRRVARPDLLLLGALLHDIGK 456 (774)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Confidence 35557888875544 333356789999999999999
No 25
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=56.66 E-value=27 Score=29.25 Aligned_cols=55 Identities=33% Similarity=0.449 Sum_probs=44.1
Q ss_pred hhhhhhHHHHHHHHHHhcC--CCCccccHHHHHHHHH------hhhcCCCCCCCchHHHHHHHHHHH
Q 046235 54 QHINQTCDFVKRMREEYGK--LNRVEMSIWECCELLN------EFVDESDPDLDEPQIEHLLQTAEA 112 (294)
Q Consensus 54 ~H~~QTvdfv~~~~~~~~~--~~~~~MsI~EA~e~Ln------~LvDeSDPD~dl~qi~H~lQTAEa 112 (294)
..+.|+.++|.+..++|+- .|+-+-+|=||-..|- =||++. +-|.+.|+++.|+.
T Consensus 16 ~~~~~g~~~v~~i~~~~gI~diN~IKPGIgEaTRvLLRRvP~~vLVr~~----~~pd~~Hl~~LA~e 78 (100)
T PF15608_consen 16 APTWQGWAEVERIAERYGISDINLIKPGIGEATRVLLRRVPWKVLVRDP----DDPDLAHLLLLAEE 78 (100)
T ss_pred chhHHHHHHHHHHHHHhCCCCcccccCChhHHHHHHHhcCCCEEEECCC----CCccHHHHHHHHHH
Confidence 3567899999999999974 6689999999999986 345532 23788999999985
No 26
>COG3481 Predicted HD-superfamily hydrolase [General function prediction only]
Probab=55.84 E-value=10 Score=36.73 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCCC--CchhhhhhhccccchhcccCCCCCCCceeecCcee
Q 046235 105 HLLQTAEAIRKDYPNE--DWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFP 155 (294)
Q Consensus 105 H~lQTAEaiR~d~p~p--dW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfp 155 (294)
=+++.+.++-+-||-- |=++..+.+||+||++-+-.. ....|.|-|+-.+
T Consensus 148 ~~~~l~~~~~~~y~~~n~dli~Ag~ilHdigK~~el~~~-~~~~yt~~g~lig 199 (287)
T COG3481 148 TVLELYKRISEIYPTVNRELIYAGAILHDIGKVLELTGP-EATEYTVRGNLIG 199 (287)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHhcccccccCCCc-ccccceeccceeE
Confidence 3566677776656543 778899999999999976333 3457877776543
No 27
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=53.33 E-value=9.5 Score=35.13 Aligned_cols=15 Identities=40% Similarity=0.811 Sum_probs=12.1
Q ss_pred hhhhhhhccccchhc
Q 046235 123 LHLTGLIHDLGKVLL 137 (294)
Q Consensus 123 ~qLtGliHDLGKll~ 137 (294)
.-..||+||+||++.
T Consensus 108 ~~~aaLlHDlgK~~~ 122 (218)
T TIGR03760 108 VFYAALLHDLGKLAV 122 (218)
T ss_pred HHHHHHHHhhhhhhH
Confidence 445679999999974
No 28
>PRK12704 phosphodiesterase; Provisional
Probab=50.31 E-value=18 Score=37.26 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHH---hhC-CCCCchhhhhhhccccchh
Q 046235 81 WECCELLNEFVDESDPDLDEPQIEHLLQTAEAIR---KDY-PNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 81 ~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR---~d~-p~pdW~qLtGliHDLGKll 136 (294)
.+++.+|..| .-.|+.+. ....|.+.+|-..+ +.. .+++-.-+.||+||+||+.
T Consensus 317 ~~i~~ll~~l-~~R~~~~q-n~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK~~ 374 (520)
T PRK12704 317 PELIKLLGRL-KYRTSYGQ-NVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGKAL 374 (520)
T ss_pred HHHHHHHHHh-hccCcCCC-cHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCcCc
Confidence 3566777766 33444432 24578877665543 222 3566778999999999984
No 29
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=49.05 E-value=10 Score=36.80 Aligned_cols=33 Identities=39% Similarity=0.547 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhCCCC--Cchhhhhhhccccchhcc
Q 046235 106 LLQTAEAIRKDYPNE--DWLHLTGLIHDLGKVLLH 138 (294)
Q Consensus 106 ~lQTAEaiR~d~p~p--dW~qLtGliHDLGKll~l 138 (294)
++++|.++-..||.- |=+-..+|+||+||+.-+
T Consensus 167 v~~~~~~l~~~y~~~n~dll~agalLHDiGKi~E~ 201 (314)
T PRK13480 167 MLRLAKSICDLYPSLNKDLLYAGIILHDLGKVIEL 201 (314)
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHhhhHHHh
Confidence 344455554556643 444445599999999966
No 30
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=48.16 E-value=16 Score=30.64 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccc
Q 046235 84 CELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDL 132 (294)
Q Consensus 84 ~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 132 (294)
+++.-+.....-..+..|-|.|++++|+.+..- +-..=...+||+||.
T Consensus 2 ~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~-~~d~~~i~aalLHD~ 49 (153)
T PF13328_consen 2 LAFAAEAHAGQRRKSGEPYISHPLEVAEILAEL-GLDEETIAAALLHDV 49 (153)
T ss_dssp HHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS----HHHHHHHHHTTH
T ss_pred HHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHc-CCCHHHHhhheeecH
Confidence 333333433334456688999999999999554 433336788899983
No 31
>PRK05092 PII uridylyl-transferase; Provisional
Probab=47.83 E-value=9.1 Score=41.69 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhh------------------CCCCCchhhhhhhccccc
Q 046235 103 IEHLLQTAEAIRKD------------------YPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 103 i~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 134 (294)
-+|.++|-+.+++- -++|+.+-|++|+||+||
T Consensus 495 d~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 544 (931)
T PRK05092 495 DEHTIRAIGVLAEIERGELADEHPLASELMPKIESRRALYVAVLLHDIAK 544 (931)
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 36888887766531 155788999999999999
No 32
>KOG4481 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.40 E-value=21 Score=32.91 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=27.3
Q ss_pred CCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC
Q 046235 73 LNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDY 117 (294)
Q Consensus 73 ~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~ 117 (294)
..+++.||-||+++||. -.-+|.+ ||||-|-..|
T Consensus 112 Ipkgkit~~eAL~~ln~--hkL~pet---------w~AekIA~ey 145 (194)
T KOG4481|consen 112 IPKGKITIVEALTFLNN--HKLLPET---------WTAEKIAQEY 145 (194)
T ss_pred CCCCceeHHHHHHHHhh--hhcChhh---------hHHHHHHHHH
Confidence 34688999999999997 5556776 7899998874
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=43.60 E-value=12 Score=35.73 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=57.9
Q ss_pred HHHHHHHHhhC--CCCCchhhhhhhccccchhc--ccCCCCCCCceeecCceeeecccCCC-cccccccccCCCC-CCcc
Q 046235 107 LQTAEAIRKDY--PNEDWLHLTGLIHDLGKVLL--HPDFGELPQWAVVGDTFPVGCAFDES-IVHHKYFKENPDY-NNPA 180 (294)
Q Consensus 107 lQTAEaiR~d~--p~pdW~qLtGliHDLGKll~--l~~~g~~pQW~vvGDTfpVGC~f~~~-iv~~e~F~~NPD~-~~p~ 180 (294)
|.+||.+++++ +..-|-+..-..--+-.|.. +...+.++-|-|.|. |.++-. -+|.+.|+.|--- ++|.
T Consensus 187 ~EeAE~~Kr~~k~~~Eif~~v~PV~eKMAeIv~~hie~~~i~dl~lvGGa-----c~~~g~e~~Fe~~l~l~v~~P~~p~ 261 (277)
T COG4820 187 LEEAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQGITDLWLVGGA-----CMQPGVEELFEKQLALQVHLPQHPL 261 (277)
T ss_pred HhHHHHhhhccccchhcccchhHHHHHHHHHHHHHhccCCCcceEEeccc-----ccCccHHHHHHHHhccccccCCCcc
Confidence 78999999998 77789888877766666653 444556677777663 666643 4577777777655 7899
Q ss_pred CCcCCCccCC
Q 046235 181 FNAKYGAYSE 190 (294)
Q Consensus 181 YnT~~GiY~p 190 (294)
|-|+.||-..
T Consensus 262 y~TPLgIA~s 271 (277)
T COG4820 262 YMTPLGIASS 271 (277)
T ss_pred eechhhhhhc
Confidence 9999999654
No 34
>PRK05007 PII uridylyl-transferase; Provisional
Probab=43.13 E-value=37 Score=37.11 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 046235 100 EPQIEHLLQTAEAIRK------------------DYPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 134 (294)
.+.-+|.+.+-+.+++ +.++++.+.|++|+||+||
T Consensus 460 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~lAaLlHDIGK 512 (884)
T PRK05007 460 YTVDEHTIRVLLKLESFADEETRQRHPLCVELYPRLPKKELLLLAALFHDIAK 512 (884)
T ss_pred CcHhHHHHHHHHHHHHHhcccccccchHHHHHHHhcCChhHHHHHHHHHhhcC
Confidence 4555888888776652 1247789999999999999
No 35
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=39.85 E-value=32 Score=31.59 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=26.4
Q ss_pred hHHHHHHHHH---HHHHhhC-CCCCchhhhhhhccccchhcc
Q 046235 101 PQIEHLLQTA---EAIRKDY-PNEDWLHLTGLIHDLGKVLLH 138 (294)
Q Consensus 101 ~qi~H~lQTA---EaiR~d~-p~pdW~qLtGliHDLGKll~l 138 (294)
..+.|.+.+| ..|-+.. .|++=....||+||+||..-.
T Consensus 36 ~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 36 HVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 3456666654 4454443 467778889999999999843
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=39.49 E-value=41 Score=36.17 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHhh---CCCCCchhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEAIRKD---YPNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d---~p~pdW~qLtGliHDLGKll 136 (294)
.+.-+|.++|.+.+.+. -..|+=+-|++|+||+||-.
T Consensus 379 ytVDeHTL~~l~~~~~~~~~~~~~~lL~LAALlHDIGKg~ 418 (693)
T PRK00227 379 HTIDEHSLNTVANCALETVTVARPDLLLLGALYHDIGKGY 418 (693)
T ss_pred CcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHhhcCCC
Confidence 45567999998866432 25677788999999999943
No 37
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=39.43 E-value=57 Score=24.74 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCccccccCCCCCCh-hhhh--hhhHHHHHHHcCCCCC
Q 046235 249 IENLKWLKIFNKYDLYSKSKVRVDV-EKVK--PYYLSLIEKYFPEKLR 293 (294)
Q Consensus 249 ~~~l~wV~~Fn~yDLYSKs~~~pdv-e~lk--PYY~~LidKY~P~~l~ 293 (294)
.++++||+...+-. ++.....|+ +.++ =-+-.||+++.|+.+.
T Consensus 2 ~~ll~Win~~l~~~--~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~ 47 (108)
T PF00307_consen 2 KELLKWINSHLEKY--GKGRRVTNFSEDLRDGVVLCKLINKLFPGTID 47 (108)
T ss_dssp HHHHHHHHHHHTTS--TTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSS
T ss_pred HHHHHHHHHHcccc--cCCCCcCcHHHHhcCHHHHHHHHHHHhhccch
Confidence 57899999887622 233444565 5555 4678999999998764
No 38
>PF06784 UPF0240: Uncharacterised protein family (UPF0240); InterPro: IPR009622 This is a group of proteins of unknown function.
Probab=39.09 E-value=27 Score=31.47 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=28.0
Q ss_pred CCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCC
Q 046235 73 LNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYP 118 (294)
Q Consensus 73 ~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p 118 (294)
..++++||.||+++|+..- .+|.+ .|||.|-++|.
T Consensus 113 vPkGkltl~qal~lL~~Hq--~~P~~---------WtaekIA~eY~ 147 (179)
T PF06784_consen 113 VPKGKLTLRQALELLNNHQ--LDPET---------WTAEKIAQEYK 147 (179)
T ss_pred CCCCceeHHHHHHHHHHhc--cCccc---------cCHHHHHHHhC
Confidence 4579999999999999754 55665 46999999974
No 39
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=38.71 E-value=18 Score=39.46 Aligned_cols=35 Identities=34% Similarity=0.527 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHhh------------------CCCCCchhhhhhhccccc
Q 046235 100 EPQIEHLLQTAEAIRKD------------------YPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 134 (294)
.+.-+|.+.|-+.+++- -.+++.+-|++|+||+||
T Consensus 459 ytVdeHtl~~v~~l~~l~~~~~~~~~p~~~~l~~~l~~~~lL~lAaLlHDIGK 511 (895)
T PRK00275 459 YTVDAHTLNLIKNLRKLRYPEVSEKFPLASKLMGRLPKPELLYIAGLYHDIGK 511 (895)
T ss_pred CcHHHHHHHHHHHHHHhhcccccccCchHHHHHHhcCCHHHHHHHHHHHhhhc
Confidence 45557999997777541 125678999999999999
No 40
>PRK04374 PII uridylyl-transferase; Provisional
Probab=38.19 E-value=24 Score=38.57 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 046235 100 EPQIEHLLQTAEAIRK------------------DYPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 134 (294)
.+.-+|.+.+-+.+++ ....|+.+-|++|+||+||
T Consensus 448 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~lL~lAaLlHDIGK 500 (869)
T PRK04374 448 YTVDQHTLMVLRNIALFAAGRADERFSIAHEVWPRLRKPELLLLAGLFHDIAK 500 (869)
T ss_pred CcHHHHHHHHHHHHHHHhccccccccccHHHHHhccCCccHHHHHHHHHhccC
Confidence 4566788887666652 1135789999999999999
No 41
>PRK08071 L-aspartate oxidase; Provisional
Probab=37.70 E-value=37 Score=34.18 Aligned_cols=72 Identities=26% Similarity=0.467 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHHhhh-cCC--CCC---CCchHHHHHHHHHHHH---------------HhhCCCCC
Q 046235 63 VKRMREEYGKLNRVEMSIWECCELLNEFV-DES--DPD---LDEPQIEHLLQTAEAI---------------RKDYPNED 121 (294)
Q Consensus 63 v~~~~~~~~~~~~~~MsI~EA~e~Ln~Lv-DeS--DPD---~dl~qi~H~lQTAEai---------------R~d~p~pd 121 (294)
.++...+|....|.+-.+.+|+..|+.|- .+. +.+ .+...+..++.+|++| |.|||...
T Consensus 415 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~ 494 (510)
T PRK08071 415 IQEKMMKYVGIVRTEQSLSEAKRWLEKYGVRNMILDHDALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHRN 494 (510)
T ss_pred HHHHHHhhccEEEcHHHHHHHHHHHHHHHHhhhhccccccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCccc
Confidence 45566778888888899999999999884 211 111 1223457888999886 44578767
Q ss_pred chhhhhhhccccch
Q 046235 122 WLHLTGLIHDLGKV 135 (294)
Q Consensus 122 W~qLtGliHDLGKl 135 (294)
|...+ ++-.-||+
T Consensus 495 ~~~~~-~~~~~~~~ 507 (510)
T PRK08071 495 WRGKE-IVRTKRKL 507 (510)
T ss_pred cCceE-EEecCCce
Confidence 85544 44444544
No 42
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=36.65 E-value=20 Score=38.91 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 046235 100 EPQIEHLLQTAEAIRK------------------DYPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 134 (294)
.+.-+|.+.|-+.+++ .-+.+..+-|++|+||+||
T Consensus 435 ytVd~Htl~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDIGK 487 (854)
T PRK01759 435 YTVDEHTLRVMLKLESFLDEESAEQHPICHQIFSQLSDRTLLYIAALFHDIAK 487 (854)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccchhHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence 4566798888776542 1256788899999999999
No 43
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=35.53 E-value=1.1e+02 Score=26.11 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcC--CC--CccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCC
Q 046235 61 DFVKRMREEYGK--LN--RVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNE 120 (294)
Q Consensus 61 dfv~~~~~~~~~--~~--~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~p 120 (294)
.|+.++++-|.+ ++ ...||..||.+.|.- +|+.+..+|.-++. +.+++-|||.
T Consensus 41 ~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv-----~~~As~~eIkkaYR--rLa~~~HPDk 97 (116)
T PTZ00100 41 GFNPSLGSLFLKNDLKGFENPMSKSEAYKILNI-----SPTASKERIREAHK--QLMLRNHPDN 97 (116)
T ss_pred hhhHHHHHHHhccccccccCCCCHHHHHHHcCC-----CCCCCHHHHHHHHH--HHHHHhCCCC
Confidence 456777776644 33 458999999999983 34555666655444 3445556763
No 44
>PRK03059 PII uridylyl-transferase; Provisional
Probab=33.96 E-value=28 Score=37.88 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHh------------------hCCCCCchhhhhhhccccc
Q 046235 101 PQIEHLLQTAEAIRK------------------DYPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 101 ~qi~H~lQTAEaiR~------------------d~p~pdW~qLtGliHDLGK 134 (294)
+.-+|.+.|-+.+++ ...+++.+.|++|+||+||
T Consensus 440 tVd~Htl~~v~~l~~~~~~~~~~~~p~~~~~~~~~~~~~lL~LAaLlHDIGK 491 (856)
T PRK03059 440 TVDQHILMVLRNLRRFAMAEHAHEYPFCSQLIANFDRPWLLYVAALFHDIAK 491 (856)
T ss_pred cHhHHHHHHHHHHHHhhccccccccchHHHHHHhcCChhHHHHHHHHHhhcc
Confidence 555799988777653 1124688999999999999
No 45
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=33.81 E-value=34 Score=34.35 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHhhC-CCCC-chhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEAIRKDY-PNED-WLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d~-p~pd-W~qLtGliHDLGKll 136 (294)
.+...|.++|-+.+.+-. ..++ .+.|+.|+||+||-.
T Consensus 257 ~~v~~Htl~vl~~~~~l~~~~~~~~l~lAaLLHDiGK~~ 295 (466)
T TIGR02692 257 KDVYEHSLTVLRQAIDLEDDGPDLVLRWAALLHDIGKPA 295 (466)
T ss_pred CcHHHHHHHHHHHHHhccccccCHHHHHHHHHhhccCCC
Confidence 466789998877765421 1234 689999999999965
No 46
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=33.61 E-value=2.7e+02 Score=28.27 Aligned_cols=158 Identities=21% Similarity=0.348 Sum_probs=101.9
Q ss_pred ccCCCcCccceeecCCC---ccCCCCCCccccccCCccc-cchhhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCC-----
Q 046235 4 LADSNDNELEQLQDGGE---GFTVPETNSFGQTFRDYGV-ESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLN----- 74 (294)
Q Consensus 4 ~~~~~~~~~~~~~d~~~---~f~~p~~~~~~~~fR~Y~~-~~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~----- 74 (294)
-||++.-..-+++-|.- .|..|.-|.-.-+|--|+. ....-..|+++|..-- ---.+++++-.++|+.--
T Consensus 94 kadgGsR~k~V~lGGera~y~FeePqPnppvVtfDVFD~p~pglpkpire~~~dVm-edP~eWArk~Vk~fgadmvTiHl 172 (403)
T COG2069 94 KADGGSRGKVVMLGGERAFYRFEEPQPNPPVVTFDVFDIPRPGLPKPIREHYDDVM-EDPGEWARKCVKKFGADMVTIHL 172 (403)
T ss_pred cCCCCCcceEEEecCcccccccCCCCCCCCeeEEEeccCCCCCCchhHHHHHHHHh-hCHHHHHHHHHHHhCCceEEEEe
Confidence 36777776666665542 6888888877778888875 2333367999998743 346899999999998411
Q ss_pred ------CccccHHHHHHHHHhhhcC----------CCCCCCchHHHHHHHHHHHHHh-------------------hCCC
Q 046235 75 ------RVEMSIWECCELLNEFVDE----------SDPDLDEPQIEHLLQTAEAIRK-------------------DYPN 119 (294)
Q Consensus 75 ------~~~MsI~EA~e~Ln~LvDe----------SDPD~dl~qi~H~lQTAEaiR~-------------------d~p~ 119 (294)
-.--+..||++.|..+++. -||..|--.++.+-..||+=|= +|+|
T Consensus 173 IsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~H 252 (403)
T COG2069 173 ISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYDH 252 (403)
T ss_pred ecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccccccCHHHHHHHHHhcCc
Confidence 1346889999999877653 5788888888888777664331 1333
Q ss_pred --CCchhhh-hhhccccchhcccCCCCCCCceeecCceeeecccCCCcccc
Q 046235 120 --EDWLHLT-GLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHH 167 (294)
Q Consensus 120 --pdW~qLt-GliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~ 167 (294)
..|-|+- -+..+|-+-|+- .+.|.=.+|=| |.-|+.--.|-|+
T Consensus 253 ~VLswt~~D~N~qk~LNrkllk---~gl~r~~IVMD--PTTcALGYGieya 298 (403)
T COG2069 253 VVLSWTQMDVNMQKTLNRKLLK---RGLPRDRIVMD--PTTCALGYGIEYA 298 (403)
T ss_pred eEEEeeccChHHHHHHHHHHHH---ccCChhheeec--cchhhhccceeee
Confidence 2555542 244555555432 23455566633 6667766665553
No 47
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=33.00 E-value=33 Score=31.78 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHHHHHhh-----CCCCCchhhhhhhccccch
Q 046235 98 LDEPQIEHLLQTAEAIRKD-----YPNEDWLHLTGLIHDLGKV 135 (294)
Q Consensus 98 ~dl~qi~H~lQTAEaiR~d-----~p~pdW~qLtGliHDLGKl 135 (294)
-++.-+...+.+|.+|-+. -.+++=+-+++|+||+|+.
T Consensus 55 ~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~ 97 (228)
T TIGR03401 55 ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTT 97 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccc
Confidence 4444455556667766432 1355567889999999975
No 48
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=32.34 E-value=62 Score=31.76 Aligned_cols=62 Identities=29% Similarity=0.400 Sum_probs=46.7
Q ss_pred ccccHHHHHHHHHhhhcCCCCCCCchHHHH------------HHHHHHHHHhhCCCCCchhhhhhhccccchhcccCCCC
Q 046235 76 VEMSIWECCELLNEFVDESDPDLDEPQIEH------------LLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGE 143 (294)
Q Consensus 76 ~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H------------~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~~g~ 143 (294)
.+-.+|+|+-.=-+|+.+|.=|.|++++-- |=-||||.|++ | |-=|+.|-+|| .+
T Consensus 178 IEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d-~--~L~q~~g~v~d----------SG 244 (300)
T COG1023 178 IEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKD-P--DLDQISGRVSD----------SG 244 (300)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhC-C--CHHHhcCeecc----------CC
Confidence 456778887776777888999999998743 33589999999 7 55688887777 36
Q ss_pred CCCceee
Q 046235 144 LPQWAVV 150 (294)
Q Consensus 144 ~pQW~vv 150 (294)
|+.|+|.
T Consensus 245 EGrWTv~ 251 (300)
T COG1023 245 EGRWTVE 251 (300)
T ss_pred CceeehH
Confidence 7788774
No 49
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=32.06 E-value=68 Score=32.32 Aligned_cols=53 Identities=25% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHH---HHHHHhhCCC----CCchhhhhhhccccchh
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQT---AEAIRKDYPN----EDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQT---AEaiR~d~p~----pdW~qLtGliHDLGKll 136 (294)
..+.++.|..++..-|+.| -.|+..+ ++++-+.+|- -|=+++.+.+||+|||-
T Consensus 168 ~~~t~~~L~~~~E~R~~et----g~H~~Rv~~~~~~lAe~lgLse~~v~~i~~AapLHDIGKva 227 (360)
T COG3437 168 LDETLEELAALLEVRDYET----GDHLERVAQYSELLAELLGLSEEEVDLIKKAAPLHDIGKVA 227 (360)
T ss_pred HHHHHHHHHHHHHhcccch----hhHHHHHHHHHHHHHHHhCCCHHHHHHHHhccchhhccccc
Confidence 3378888888887777776 4455444 3344333331 26678899999999986
No 50
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=31.89 E-value=25 Score=34.49 Aligned_cols=116 Identities=22% Similarity=0.368 Sum_probs=73.7
Q ss_pred CCceeecCceeeecccCCCccc-cc-ccc--cCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCc
Q 046235 145 PQWAVVGDTFPVGCAFDESIVH-HK-YFK--ENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPS 220 (294)
Q Consensus 145 pQW~vvGDTfpVGC~f~~~iv~-~e-~F~--~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~ 220 (294)
++.+-.=|.|++||-+.. +|| .| ||. +|+|- . .-+.+| -|-|| ||.-+...+..||+
T Consensus 208 ~~YDYSLD~WS~GcmlA~-miFrkepFFhG~dN~DQ---L-----------VkIakV---LGt~e-l~~Yl~KY~i~Ldp 268 (338)
T KOG0668|consen 208 QMYDYSLDMWSLGCMLAS-MIFRKEPFFHGHDNYDQ---L-----------VKIAKV---LGTDE-LYAYLNKYQIDLDP 268 (338)
T ss_pred hhccccHHHHHHHHHHHH-HHhccCcccCCCCCHHH---H-----------HHHHHH---hChHH-HHHHHHHHccCCCh
Confidence 345556678888888765 444 33 343 22221 0 111223 26666 55555566889999
Q ss_pred hhhhhhhhcccccccc--ccccccccChhhHHHHHHHHHcCCccccccCCCCCChhhhh-hhhHHHHH
Q 046235 221 AGLFIIRYHSFYALHR--ADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVK-PYYLSLIE 285 (294)
Q Consensus 221 eaL~mIRyHSFYpwH~--~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lk-PYY~~Lid 285 (294)
+-=.+++-||=.||++ ...=+||.+++-.+.|.=+..+. -.+.+.--|++. |||....+
T Consensus 269 ~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYD------HqeRlTakEam~HpyF~~~~~ 330 (338)
T KOG0668|consen 269 QFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYD------HQERLTAKEAMAHPYFAPVRE 330 (338)
T ss_pred hHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhc------cccccchHHHhcCchHHHHHH
Confidence 9999999999999998 56679999998888877666543 222233344444 88876654
No 51
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=26 Score=36.73 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCchhhhh
Q 046235 110 AEAIRKDYPNEDWLHLTG 127 (294)
Q Consensus 110 AEaiR~d~p~pdW~qLtG 127 (294)
|+-+|+++|.++|+|+|=
T Consensus 373 A~~a~r~~g~~~Wlq~Ty 390 (631)
T KOG2155|consen 373 AACAMRDPGKNDWLQLTY 390 (631)
T ss_pred HHHHhhcCCCCccccccc
Confidence 888999999999999984
No 52
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=29.73 E-value=45 Score=33.82 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchh
Q 046235 101 PQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 101 ~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll 136 (294)
....|.+.+-..+.+. +..-.+-+++|+||+||-.
T Consensus 228 d~~~htl~~l~~~~~~-~~~l~lR~AaLlHDiGK~~ 262 (417)
T PRK13298 228 NLGNYILMGLSKISKL-TKDIDIRFSYLCQFLGSMI 262 (417)
T ss_pred hHHHHHHHHHHHHHhc-CCCHHHHHHHHHhhhcCCC
Confidence 4457777666666544 3445678899999999975
No 53
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=28.51 E-value=20 Score=24.11 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.2
Q ss_pred CceeecCceeee
Q 046235 146 QWAVVGDTFPVG 157 (294)
Q Consensus 146 QW~vvGDTfpVG 157 (294)
.=-|+|+|||+|
T Consensus 20 dLG~~G~~fpIa 31 (31)
T PF12477_consen 20 DLGVIGPTFPIA 31 (31)
T ss_pred hccccccccccC
Confidence 445779999986
No 54
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=27.74 E-value=21 Score=38.44 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhh------------------CCCCCchhhhhhhccccc
Q 046235 101 PQIEHLLQTAEAIRKD------------------YPNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 101 ~qi~H~lQTAEaiR~d------------------~p~pdW~qLtGliHDLGK 134 (294)
+.-+|.+.+.+.+.+- -++++-+-|++|+||+||
T Consensus 428 tVd~Htl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~lAaLlHDiGK 479 (850)
T TIGR01693 428 TVDEHTLRTVVHLAPFARGRLAREHPLASELMPKIEDPELLYLAALLHDIGK 479 (850)
T ss_pred chhHHHHHHHHHHHHHhccccccccccHHHHHhccCCHHHHHHHHHHHHHhc
Confidence 3345777776666432 124677899999999999
No 55
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=27.11 E-value=23 Score=37.56 Aligned_cols=14 Identities=43% Similarity=0.861 Sum_probs=12.2
Q ss_pred hhhhhhccccchhc
Q 046235 124 HLTGLIHDLGKVLL 137 (294)
Q Consensus 124 qLtGliHDLGKll~ 137 (294)
.+.||+||+||+.-
T Consensus 2 ~~~aLLHDIGK~~~ 15 (648)
T TIGR02578 2 AVAALLHDIGKVIR 15 (648)
T ss_pred chhhhhhccchhhh
Confidence 46789999999994
No 56
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=26.17 E-value=1.8e+02 Score=27.89 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhcC-CCCccccHHHHHHHHHhh-hcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchh
Q 046235 59 TCDFVKRMREEYGK-LNRVEMSIWECCELLNEF-VDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 59 Tvdfv~~~~~~~~~-~~~~~MsI~EA~e~Ln~L-vDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll 136 (294)
++++.+++-..+.= -|....|-.+..+.|.++ .-+..||. -+.=..-||+.|++.+|- +|++
T Consensus 32 ~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~---i~TS~~at~~~l~~~~~~-------------~kv~ 95 (269)
T COG0647 32 ALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDD---IVTSGDATADYLAKQKPG-------------KKVY 95 (269)
T ss_pred HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHH---eecHHHHHHHHHHhhCCC-------------CEEE
Confidence 44444444344432 245667777677888873 32233321 135566788888887552 5555
Q ss_pred cccCCCC--------CCCceeecCcee-----eecccCCCccccc-------------ccccCCCCCCccCCcCCCccCC
Q 046235 137 LHPDFGE--------LPQWAVVGDTFP-----VGCAFDESIVHHK-------------YFKENPDYNNPAFNAKYGAYSE 190 (294)
Q Consensus 137 ~l~~~g~--------~pQW~vvGDTfp-----VGC~f~~~iv~~e-------------~F~~NPD~~~p~YnT~~GiY~p 190 (294)
.+ |. .-.|.++++.=+ |++..++.+.|.. |+..|||.. ..|+.| +.|
T Consensus 96 vi---G~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~---~p~~~g-~~p 168 (269)
T COG0647 96 VI---GEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLT---VPTERG-LRP 168 (269)
T ss_pred EE---CCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCcc---ccCCCC-Ccc
Confidence 43 21 224556554444 6667777776644 677899985 456777 888
Q ss_pred CCC
Q 046235 191 GRG 193 (294)
Q Consensus 191 ~CG 193 (294)
+||
T Consensus 169 gaG 171 (269)
T COG0647 169 GAG 171 (269)
T ss_pred CcH
Confidence 987
No 57
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.86 E-value=1.2e+02 Score=23.79 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=33.8
Q ss_pred CccccHHHHHHHHHhhhcCC-CCCCCchHHHHHHHHHHHHHhh
Q 046235 75 RVEMSIWECCELLNEFVDES-DPDLDEPQIEHLLQTAEAIRKD 116 (294)
Q Consensus 75 ~~~MsI~EA~e~Ln~LvDeS-DPD~dl~qi~H~lQTAEaiR~d 116 (294)
+.++|.-+|+..|.++|..- ++++.|.+..-+++.+-++-+.
T Consensus 3 ~k~~sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~ 45 (75)
T PRK14064 3 TKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKL 45 (75)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 35689999999999998875 5689999998888877665543
No 58
>PF04986 Y2_Tnp: Putative transposase; InterPro: IPR007069 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=24.86 E-value=24 Score=31.16 Aligned_cols=33 Identities=21% Similarity=0.543 Sum_probs=30.0
Q ss_pred cccccCcchHHHHHHHhCCCCCCchhhhhhhhccccc
Q 046235 197 VFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYA 233 (294)
Q Consensus 197 V~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYp 233 (294)
..|...-+|+|-+++.+ +|+.+.-||||+=||.
T Consensus 145 ~~~~l~~~efi~r~l~H----vp~~~f~~iR~yG~~s 177 (183)
T PF04986_consen 145 KTLTLSAEEFIRRLLQH----VPPKGFKRIRYYGFYS 177 (183)
T ss_pred EEEEechHHHHHHHHhh----cCCCCceEEEEEEEEc
Confidence 56777899999999986 9999999999999886
No 59
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=24.80 E-value=28 Score=25.35 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=14.0
Q ss_pred hhccccchhcccCCCCCCCceeecCceeeec
Q 046235 128 LIHDLGKVLLHPDFGELPQWAVVGDTFPVGC 158 (294)
Q Consensus 128 liHDLGKll~l~~~g~~pQW~vvGDTfpVGC 158 (294)
.||.||+|... .|.|...-=.||+|=
T Consensus 5 ~v~sLG~i~~~-----~~~fh~~~~IyP~Gy 30 (54)
T PF05964_consen 5 TVHSLGKIVPD-----RPAFHSERYIYPVGY 30 (54)
T ss_dssp EEEEEEE---S-----SGGGB-SS-B--EEE
T ss_pred EEEECeEEeCC-----CCCccCCCEEeeCCE
Confidence 58999999943 256777777899983
No 60
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=23.65 E-value=28 Score=30.02 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=15.8
Q ss_pred ccccHHHHHHHHHhhhcC-CCCCCCchHHHHHHHH
Q 046235 76 VEMSIWECCELLNEFVDE-SDPDLDEPQIEHLLQT 109 (294)
Q Consensus 76 ~~MsI~EA~e~Ln~LvDe-SDPD~dl~qi~H~lQT 109 (294)
..||+.||+..|| |++ .+++.=.-+.+|||..
T Consensus 53 ~~Mtl~EA~~ILn--v~~~~~~eeI~k~y~~Lf~~ 85 (127)
T PF03656_consen 53 KGMTLDEARQILN--VKEELSREEIQKRYKHLFKA 85 (127)
T ss_dssp ----HHHHHHHHT----G--SHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcC--CCCccCHHHHHHHHHHHHhc
Confidence 4799999999999 444 3333222334666654
No 61
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=23.41 E-value=64 Score=29.72 Aligned_cols=37 Identities=35% Similarity=0.508 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHhh---C-CCCCchhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEAIRKD---Y-PNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d---~-p~pdW~qLtGliHDLGKll 136 (294)
.+-++|.+..||+.++- | -++.=--++|+.||++|-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~ 56 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKEL 56 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhC
Confidence 35789988777766642 2 2334478999999999987
No 62
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=23.28 E-value=76 Score=33.88 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=25.4
Q ss_pred CCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccc
Q 046235 98 LDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDL 132 (294)
Q Consensus 98 ~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 132 (294)
+..|-|.|.+++|+.+..-..+++ ...+||+||.
T Consensus 16 sg~PYi~Hpl~VA~iL~~~~~D~~-~i~AaLLHDv 49 (683)
T TIGR00691 16 SGEPYIIHPLAVALILAELGMDEE-TVCAALLHDV 49 (683)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCHH-HHHHHhccch
Confidence 457889999999999986522222 5668999996
No 63
>PF07514 TraI_2: Putative helicase; InterPro: IPR011119 The members of this family are restricted to the proteobacteria. Some members have been annotated as helicase, conjugative relaxase or nickase. The majority contain an HD domain, which is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria.
Probab=22.14 E-value=32 Score=33.40 Aligned_cols=36 Identities=39% Similarity=0.698 Sum_probs=24.1
Q ss_pred HHHHHHHHHH-HHHhhC----C-----------CCCch---hhhhhhccccchhc
Q 046235 102 QIEHLLQTAE-AIRKDY----P-----------NEDWL---HLTGLIHDLGKVLL 137 (294)
Q Consensus 102 qi~H~lQTAE-aiR~d~----p-----------~pdW~---qLtGliHDLGKll~ 137 (294)
-+.|.|++|. |+|-.. | .+.|- -++||.|||||++.
T Consensus 67 ll~h~LEva~~Alrl~~~~~lp~~a~pEe~~~q~~~W~~avf~AALlhdlgk~l~ 121 (327)
T PF07514_consen 67 LLDHTLEVAAYALRLRQGYMLPPGATPEEQAAQEPAWRYAVFYAALLHDLGKPLT 121 (327)
T ss_pred HHHHHHHHHHHHHHHhcCeecCCCCChhhHHHHHhhhHHHHHHHHHHhccCccee
Confidence 3688888774 444321 1 45674 46789999999775
No 64
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=21.88 E-value=82 Score=26.15 Aligned_cols=52 Identities=27% Similarity=0.325 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCccccHHHHHHHHHhhhcCCC------CC-C------CchHHHHHHHHHHHHHh
Q 046235 64 KRMREEYGKLNRVEMSIWECCELLNEFVDESD------PD-L------DEPQIEHLLQTAEAIRK 115 (294)
Q Consensus 64 ~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSD------PD-~------dl~qi~H~lQTAEaiR~ 115 (294)
++...++.+..|.+.++-+|++.|..|-.+-. .. . +.-.+.+++.+|++|-+
T Consensus 5 q~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~ 69 (129)
T PF02910_consen 5 QEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAK 69 (129)
T ss_dssp HHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHH
Confidence 45667788899999999999999998855432 11 1 23445889999998743
No 65
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=21.67 E-value=95 Score=23.28 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=15.7
Q ss_pred CCccccHHHHHHHHHhhhcCCCCCC
Q 046235 74 NRVEMSIWECCELLNEFVDESDPDL 98 (294)
Q Consensus 74 ~~~~MsI~EA~e~Ln~LvDeSDPD~ 98 (294)
++.++.+.+|++.|.+.++ +.+|-
T Consensus 19 ~~~r~~vS~a~~~li~y~~-~~~DP 42 (68)
T PF00631_consen 19 ERERIKVSKACKELIEYCE-STPDP 42 (68)
T ss_dssp TS----HHHHHHHHHHHHH-GTC-H
T ss_pred cccceeHHHHHHHHHHHhc-CCCCc
Confidence 3466799999999999988 66664
No 66
>PF07606 DUF1569: Protein of unknown function (DUF1569); InterPro: IPR011463 This entry represents a family of hypothetical proteins identified in Rhodopirellula baltica and other bacteria.
Probab=20.86 E-value=1.6e+02 Score=25.36 Aligned_cols=55 Identities=24% Similarity=0.512 Sum_probs=40.4
Q ss_pred cHHHHHHHHHhhhcCCCCC---CCchHH-HHHHHHHHHHHhhCC--CCCchhhhhhhccccchhcc
Q 046235 79 SIWECCELLNEFVDESDPD---LDEPQI-EHLLQTAEAIRKDYP--NEDWLHLTGLIHDLGKVLLH 138 (294)
Q Consensus 79 sI~EA~e~Ln~LvDeSDPD---~dl~qi-~H~lQTAEaiR~d~p--~pdW~qLtGliHDLGKll~l 138 (294)
++-|++.-|+.|..++-|- -++.|| .|+-|+=|..-..+| .|-||. .-+||+++.
T Consensus 11 ~l~e~~~ri~~L~~~~~~~wGkms~~Qml~Hc~~~~~~s~~g~~~~k~~~~~-----~~lgk~~~~ 71 (152)
T PF07606_consen 11 DLDEIINRINRLTPDTQPQWGKMSVSQMLAHCAQSIEMSMEGYPFPKPAWFR-----RTLGKLAFK 71 (152)
T ss_pred CHHHHHHHHHHhCcCCCCCcCCcCHHHHHHHHHHHHHHHhcCCCCCccHHHH-----HHHHHHHHH
Confidence 5679999999999988885 456666 899888888765443 445765 448888854
No 67
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=20.64 E-value=63 Score=29.20 Aligned_cols=37 Identities=32% Similarity=0.394 Sum_probs=25.2
Q ss_pred chHHHHHHHHHH------HHHhhCC---CCCchhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAE------AIRKDYP---NEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAE------aiR~d~p---~pdW~qLtGliHDLGKll 136 (294)
.+...|+|++|- .+.+..| ++.=..+.+|+||++.++
T Consensus 32 eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~ 77 (193)
T COG1896 32 ESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEAL 77 (193)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHH
Confidence 567788877762 2332245 344467789999999998
No 68
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=20.58 E-value=55 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.4
Q ss_pred ccCCcCCCccCCCCC
Q 046235 179 PAFNAKYGAYSEGRG 193 (294)
Q Consensus 179 p~YnT~~GiY~p~CG 193 (294)
.-||++-|+|+++=+
T Consensus 5 ~qyn~P~glys~~n~ 19 (26)
T smart00735 5 KQYNSPIGLYSSENI 19 (26)
T ss_pred cccCCCCCCCCcccH
Confidence 569999999988754
No 69
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.38 E-value=1.6e+02 Score=23.51 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=33.0
Q ss_pred CccccHHHHHHHHHhhhcCC-CCCCCchHHHHHHHHHHHHHh
Q 046235 75 RVEMSIWECCELLNEFVDES-DPDLDEPQIEHLLQTAEAIRK 115 (294)
Q Consensus 75 ~~~MsI~EA~e~Ln~LvDeS-DPD~dl~qi~H~lQTAEaiR~ 115 (294)
...+|.-+|++.|.++|..- +++++|.+..-+++-+-++-+
T Consensus 4 ~k~~sfEeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k 45 (80)
T PRK14067 4 KKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLAR 45 (80)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 45689999999999998875 678999999888877655443
Done!