Query 046235
Match_columns 294
No_of_seqs 137 out of 213
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2huo_A Inositol oxygenase; pro 100.0 3E-147 1E-151 1019.4 18.7 274 16-294 11-289 (289)
2 2ibn_A Inositol oxygenase; red 100.0 3E-136 9E-141 933.6 15.8 247 45-294 3-250 (250)
3 3ccg_A HD superfamily hydrolas 93.2 0.051 1.7E-06 45.8 3.0 52 78-136 3-58 (190)
4 2o08_A BH1327 protein; putativ 93.1 0.056 1.9E-06 45.4 3.3 52 78-136 2-57 (188)
5 2ogi_A Hypothetical protein SA 92.6 0.07 2.4E-06 45.3 3.1 53 77-136 9-65 (196)
6 3hc1_A Uncharacterized HDOD do 91.7 0.19 6.6E-06 45.1 5.1 129 70-236 72-223 (305)
7 3ljx_A MMOQ response regulator 91.0 0.19 6.6E-06 45.0 4.3 125 70-230 61-206 (288)
8 3i7a_A Putative metal-dependen 89.2 0.43 1.5E-05 42.3 5.0 120 69-231 68-215 (281)
9 2qgs_A Protein Se1688; alpha-h 85.4 0.65 2.2E-05 40.3 3.8 52 80-134 7-63 (225)
10 3m1t_A Putative phosphohydrola 83.5 0.78 2.7E-05 40.6 3.6 123 72-230 62-203 (275)
11 3djb_A Hydrolase, HD family; a 82.1 1 3.6E-05 39.6 3.8 56 80-135 7-63 (223)
12 3b57_A LIN1889 protein; Q92AN1 79.7 1.3 4.5E-05 37.7 3.5 55 82-136 9-64 (209)
13 2pq7_A Predicted HD superfamil 79.5 1.4 4.9E-05 37.5 3.6 56 80-135 15-71 (220)
14 3dto_A BH2835 protein; all alp 78.9 1.7 5.8E-05 38.3 4.0 57 80-136 7-64 (223)
15 2pjq_A Uncharacterized protein 78.7 0.96 3.3E-05 39.5 2.3 57 78-134 10-67 (231)
16 3sk9_A Putative uncharacterize 77.6 1.2 4.1E-05 40.4 2.7 46 93-141 18-83 (265)
17 1vqr_A Hypothetical protein CJ 75.8 1.6 5.5E-05 38.8 3.0 129 69-230 75-225 (297)
18 3tm8_A BD1817, uncharacterized 74.0 1.6 5.4E-05 40.0 2.5 43 202-247 231-273 (328)
19 3mem_A Putative signal transdu 72.2 1.7 5.9E-05 41.6 2.4 128 70-230 230-382 (457)
20 3kq5_A Hypothetical cytosolic 69.4 1.7 5.7E-05 42.4 1.7 37 101-137 75-120 (393)
21 1ynb_A Hypothetical protein AF 48.2 9.5 0.00032 32.8 2.5 36 100-136 37-80 (173)
22 3nr1_A HD domain-containing pr 44.6 30 0.001 29.4 5.1 53 80-132 7-62 (178)
23 3nqw_A CG11900; stringent resp 43.8 34 0.0012 29.0 5.3 53 80-132 9-64 (179)
24 3gw7_A Uncharacterized protein 42.7 9.3 0.00032 34.0 1.6 41 95-135 22-63 (239)
25 2hek_A Hypothetical protein; p 42.1 12 0.00041 35.4 2.4 38 100-137 49-91 (371)
26 2paq_A 5'-deoxynucleotidase YF 41.4 10 0.00035 32.7 1.7 38 100-137 30-77 (201)
27 4dmb_A HD domain-containing pr 41.3 9.2 0.00031 33.7 1.4 37 100-136 44-83 (204)
28 3m5f_A Metal dependent phospho 40.1 13 0.00045 34.0 2.2 17 121-137 57-73 (244)
29 1chu_A Protein (L-aspartate ox 37.0 31 0.0011 33.3 4.4 52 63-114 443-501 (540)
30 2l3i_A Aoxki4A, antimicrobial 33.9 32 0.0011 22.1 2.7 25 199-231 6-30 (30)
31 2ksn_A Ubiquitin domain-contai 28.1 80 0.0027 26.8 4.9 47 59-116 34-83 (137)
32 2gz4_A Hypothetical protein AT 27.9 39 0.0013 29.8 3.2 38 99-136 53-91 (207)
33 3aql_A Poly(A) polymerase; tra 27.3 23 0.0008 33.8 1.8 36 101-136 266-303 (415)
34 1vj7_A Bifunctional RELA/SPOT; 25.3 54 0.0018 31.4 3.9 52 80-132 28-79 (393)
35 2e5v_A L-aspartate oxidase; ar 23.1 53 0.0018 30.9 3.3 39 63-113 398-436 (472)
36 2dqb_A Deoxyguanosinetriphosph 21.4 27 0.00091 33.3 0.9 17 120-136 98-114 (376)
37 1dqu_A Isocitrate lyase; beta 20.2 49 0.0017 33.4 2.5 39 98-136 396-450 (538)
38 2q14_A Phosphohydrolase; BT420 20.1 23 0.0008 34.1 0.2 14 123-136 89-102 (410)
No 1
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=100.00 E-value=3.3e-147 Score=1019.43 Aligned_cols=274 Identities=45% Similarity=0.849 Sum_probs=252.4
Q ss_pred ecCCCccCCCCCC----ccccccCCccccchhhHHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhh
Q 046235 16 QDGGEGFTVPETN----SFGQTFRDYGVESERQKGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFV 91 (294)
Q Consensus 16 ~d~~~~f~~p~~~----~~~~~fR~Y~~~~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~Lv 91 (294)
+|+++ |..|+.+ +++++||||+. +.+++||++|||+||++|||+||++||++|++++|++|||||||++||+||
T Consensus 11 ~d~~~-~~~p~~~~~~~k~~~~FR~Y~~-~~~~~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MtIweA~e~Ln~Lv 88 (289)
T 2huo_A 11 PDPSL-VYRPDVDPEMAKSKDSFRNYTS-GPLLDRVFTTYKLMHTHQTVDFVSRKRIQYGSFSYKKMTIMEAVGMLDDLV 88 (289)
T ss_dssp ----------------------CCCSSS-CSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCC
T ss_pred CCccc-eeccCccccccccHHHhhCccc-chhHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhc
Confidence 78875 5667666 77889999997 557789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCccccc-cc
Q 046235 92 DESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHK-YF 170 (294)
Q Consensus 92 DeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e-~F 170 (294)
||||||+|+|||+||||||||||+|||..||||||||||||||||++ +++|||+||||||||||+|+++|||++ +|
T Consensus 89 DeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDLGKvl~~---~~epQW~vvGDTfpVGC~f~~~iv~~e~~F 165 (289)
T 2huo_A 89 DESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLGKIMAL---WGEPQWAVVGDTFPVGCRPQASVVFCDSTF 165 (289)
T ss_dssp CSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTGGGGGGG---GTCCGGGTSSCCCBSSSCCCTTSTTTTTSC
T ss_pred CCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccchhhhhh---cCCCceeeecCcceeccccccccccchhhc
Confidence 99999999999999999999999997777999999999999999987 499999999999999999999999999 99
Q ss_pred ccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHH
Q 046235 171 KENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIE 250 (294)
Q Consensus 171 ~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~ 250 (294)
++|||.+||+||||||||+||||||||+||||||||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+
T Consensus 166 ~~NpD~~~p~YnTk~GiY~p~CGLdnV~mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~~L~ne~D~~ 245 (289)
T 2huo_A 166 QDNPDLQDPRYSTELGMYQPHCGLENVLMSWGHDEYLYQMMKFNKFSLPSEAFYMIRFHSFYPWHTGGDYRQLCSQQDLD 245 (289)
T ss_dssp TTCGGGGSTTTSSSSTTCCTTCCGGGSCBCSSHHHHHHHHHHHTTCCCCHHHHHHHHHTTCHHHHTSSCCTTTCCHHHHH
T ss_pred cCCCCCCCccccccCCcccCCCCccceeecccchHHHHHHHHcCCCCCCHHHHHHHHHhccCcccccccHhhhcChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccccCCCCCChhhhhhhhHHHHHHHcCCCCCC
Q 046235 251 NLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSLIEKYFPEKLRW 294 (294)
Q Consensus 251 ~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~LidKY~P~~l~W 294 (294)
||+||++||||||||||+++||||+|||||++|||||||++|+|
T Consensus 246 ~l~wv~~Fn~yDLYSKs~~~pdve~lkpYY~~LidKY~P~~l~W 289 (289)
T 2huo_A 246 MLPWVQEFNKFDLYTKCPDLPDVESLRPYYQGLIDKYCPGTLSW 289 (289)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHSCSCEEC
T ss_pred HHHHHHHhCcccccccCCCCCCHHHHHHHHHHHHHHHCCcccCC
Confidence 99999999999999999999999999999999999999999999
No 2
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=100.00 E-value=2.6e-136 Score=933.56 Aligned_cols=247 Identities=48% Similarity=0.896 Sum_probs=234.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchh
Q 046235 45 KGVEEFYRTQHINQTCDFVKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLH 124 (294)
Q Consensus 45 ~~V~~fYr~~H~~QTvdfv~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~q 124 (294)
+||++|||+||++|||+||++||++|++++|++|||||||++||+||||||||++++||+|||||||+||+|+++.||||
T Consensus 3 ~~V~~~Yr~~h~~QTv~fv~~~~~~~~~~~~~~mti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~ 82 (250)
T 2ibn_A 3 DRVFTTYKLMHTHQTVDFVRSKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFH 82 (250)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTCCSCEECHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999966669999
Q ss_pred hhhhhccccchhcccCCCCCCCceeecCceeeecccCCCccccc-ccccCCCCCCccCCcCCCccCCCCCccccccccCc
Q 046235 125 LTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHK-YFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGH 203 (294)
Q Consensus 125 LtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e-~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGH 203 (294)
||||||||||+|++ +++|||+||||||||||+|+++|||++ +|++|||.+||+||||||||+||||||||+|||||
T Consensus 83 laaLlHDLGkll~~---~~~~qW~vvgdtfpvGc~f~~~iv~~e~~f~~NpD~~~~~Ynt~~GiY~~~CGLdnv~msWgh 159 (250)
T 2ibn_A 83 LVGLLHDLGKVLAL---FGEPQWAVVGDTFPVGCRPQASVVFCDSTFQDNPDLQDPRYSTELGMYQPHCGLDRVLMSWGH 159 (250)
T ss_dssp HHHHHTTGGGHHHH---TTCCGGGTSSCCCBSSSCCCTTSTTHHHHCTTCGGGGCTTTSSSSTTCCTTCCGGGSCBCCSH
T ss_pred HHHHHhccHhhhcc---cCCcchhhccCcccccCccchhhcchhhcccCCCCCCCccccccCCcccCCCCccceeecccc
Confidence 99999999999987 489999999999999999999999999 99999999999999999999999999999999999
Q ss_pred chHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChhhHHHHHHHHHcCCccccccCCCCCChhhhhhhhHHH
Q 046235 204 DDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEEDIENLKWLKIFNKYDLYSKSKVRVDVEKVKPYYLSL 283 (294)
Q Consensus 204 DEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~D~~~l~wV~~Fn~yDLYSKs~~~pdve~lkPYY~~L 283 (294)
|||||+|||+|+||||+|||+|||||||||||++|||+||||++|.+||+||++||||||||||+++||||+|||||++|
T Consensus 160 DEYlY~Vlk~n~stLP~eaL~mIRyhSfypwH~~~~Y~~l~n~~D~~~l~~v~~Fn~yDLYsK~~~~pdve~l~pYY~~L 239 (250)
T 2ibn_A 160 DEYMYQVMKFNKFSLPPEAFYMIRFHSFYPWHTGRDYQQLCSQQDLAMLPWVREFNKFDLYTKCPDLPDVDKLRPYYQGL 239 (250)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHTTCHHHHTTCCCTTTCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHhccCchhcccchhhhcCHhHHHHHHHHHHhCCccccccCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 046235 284 IEKYFPEKLRW 294 (294)
Q Consensus 284 idKY~P~~l~W 294 (294)
||||||++|+|
T Consensus 240 idky~P~~l~W 250 (250)
T 2ibn_A 240 IDKYCPGILSW 250 (250)
T ss_dssp HHHHSCSCEEC
T ss_pred HHHHCCcccCC
Confidence 99999999999
No 3
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=93.16 E-value=0.051 Score=45.78 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 046235 78 MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK---DYP-NEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 78 MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 136 (294)
|++.++.+.|.+.+++ ....|.+.+|...+. .++ +++-..+.||+||+||+.
T Consensus 3 ~~~~~~~~~l~~~~~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk~~ 58 (190)
T 3ccg_A 3 WSYDKITDYLMNNLGE-------KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKKL 58 (190)
T ss_dssp CCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC
Confidence 7888999999887753 357899988876553 222 456688999999999975
No 4
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=93.14 E-value=0.056 Score=45.44 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 046235 78 MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK---DYP-NEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 78 MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 136 (294)
|++.++.+.|.+.+++ ....|.+.+|...+. .+| +++=..+.||+||+||+.
T Consensus 2 ~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk~~ 57 (188)
T 2o08_A 2 MNRGKALQLVKPHLTE-------HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFR 57 (188)
T ss_dssp CCHHHHHHHHGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTS
T ss_pred CCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 7888999999887653 467899988776553 223 345678999999999985
No 5
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=92.58 E-value=0.07 Score=45.34 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHh---hCC-CCCchhhhhhhccccchh
Q 046235 77 EMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRK---DYP-NEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 77 ~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~---d~p-~pdW~qLtGliHDLGKll 136 (294)
.|++-++.+.|.+.+++ .-..|.+.+|...+. .+| +++-..+.||+||+||+.
T Consensus 9 ~~~~~~~~~~l~~~l~~-------~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK~~ 65 (196)
T 2ogi_A 9 GLDRTELLSKVRHMMSD-------KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKEL 65 (196)
T ss_dssp SSCHHHHHHHHHTTSCH-------HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTC
T ss_pred cccHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCCcC
Confidence 38899999999887653 357899988776553 223 456678999999999985
No 6
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=91.68 E-value=0.19 Score=45.11 Aligned_cols=129 Identities=19% Similarity=0.137 Sum_probs=78.0
Q ss_pred hcCCCCccccHHHHHHHHH--------------hhhcCCCCCCCch-HHHHHHHHHHHHHh---hC--CCCCchhhhhhh
Q 046235 70 YGKLNRVEMSIWECCELLN--------------EFVDESDPDLDEP-QIEHLLQTAEAIRK---DY--PNEDWLHLTGLI 129 (294)
Q Consensus 70 ~~~~~~~~MsI~EA~e~Ln--------------~LvDeSDPD~dl~-qi~H~lQTAEaiR~---d~--p~pdW~qLtGli 129 (294)
+.++.+.--||.+|+-.|- +.+....+..+.. -..|.+.+|..++. .. ++++-+-++||+
T Consensus 72 ~~~~~~~I~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agll 151 (305)
T 3hc1_A 72 LYSAARPISSIRDAVIYLGLDLLREAIFTCAIVDLFKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLL 151 (305)
T ss_dssp HHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3345677889999988762 1222222223322 35899998887663 22 356778899999
Q ss_pred ccccchhcccCCCCCCCceeecCceeeecccCCCccccccc---ccCCCCCCccCCcCCCccCCCCCccccccccCcchH
Q 046235 130 HDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYF---KENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDY 206 (294)
Q Consensus 130 HDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F---~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEY 206 (294)
||+||+.....+ | +.|. +.. ...|.. . .-.+.-.|-..|.+.
T Consensus 152 HDIGkl~l~~~~---p------~~~~------------~il~~~~~~~~~---l-----------~~~E~~~~~~~H~~i 196 (305)
T 3hc1_A 152 HDVGEVFINFFR---G------KEFS------------QVVTLVDEEKIT---F-----------GQAEERLFGTSHCEV 196 (305)
T ss_dssp TTHHHHHHHHHS---H------HHHH------------HHHHHHHHHCCC---H-----------HHHHHHHHSSCHHHH
T ss_pred HHhhHHHHHHHH---H------HHHH------------HHHHHHHhcCCC---H-----------HHHHHHHHCCCHHHH
Confidence 999999854111 0 0110 100 001110 0 012334555679999
Q ss_pred HHHHHHhCCCCCCchhhhhhhhcccccccc
Q 046235 207 MYLVAKENKTTLPSAGLFIIRYHSFYALHR 236 (294)
Q Consensus 207 lY~Vlk~n~stLP~eaL~mIRyHSFYpwH~ 236 (294)
=+.+++. ..+|++...+||+|-- ||..
T Consensus 197 G~~ll~~--w~lp~~i~~~I~~HHe-~~~~ 223 (305)
T 3hc1_A 197 GFALAKR--WSLNEFICDTILYHHD-IEAV 223 (305)
T ss_dssp HHHHHHH--TTCCHHHHHHHHHTTC-GGGC
T ss_pred HHHHHHH--cCCCHHHHHHHHHhCC-hhhc
Confidence 9999997 5899999999999843 4443
No 7
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A 3p3q_A
Probab=90.96 E-value=0.19 Score=44.96 Aligned_cols=125 Identities=15% Similarity=0.224 Sum_probs=74.9
Q ss_pred hcCCCCccccHHHHHHHHH-----h---------hhcCCCC-CCCch-HHHHHHHHHHHHHh---hCC--CCCchhhhhh
Q 046235 70 YGKLNRVEMSIWECCELLN-----E---------FVDESDP-DLDEP-QIEHLLQTAEAIRK---DYP--NEDWLHLTGL 128 (294)
Q Consensus 70 ~~~~~~~~MsI~EA~e~Ln-----~---------LvDeSDP-D~dl~-qi~H~lQTAEaiR~---d~p--~pdW~qLtGl 128 (294)
+.++.+.--||.+|+.+|= + .+....+ ..++. -..|.+++|..++. ..+ +++-.-++||
T Consensus 61 ~~~~~~~I~si~~Av~~LG~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~hs~~~A~~a~~la~~~~~~~~~~~~~agL 140 (288)
T 3ljx_A 61 AQGTRRPVASVIDAIDLVGLPAVRQFALSLSLIDAHREGRCEAFDYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGL 140 (288)
T ss_dssp C--CCSCCCSHHHHHHHHCHHHHHHHHHGGGC----CTTSCTTSCHHHHHHHHHHHHHHHHHHHHTSSSSCHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3346677889999998761 1 1121111 12333 35899999887764 223 5678899999
Q ss_pred hccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHH
Q 046235 129 IHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMY 208 (294)
Q Consensus 129 iHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY 208 (294)
+||+||+++...+ | +.|. +.+.. +.. ++ -.-.++-.+...|.+.=+
T Consensus 141 LhdiGkl~l~~~~---p------~~~~------------~il~~-~~~-~~-----------l~~~E~~~lg~~H~~vGa 186 (288)
T 3ljx_A 141 LADVGRLALATAW---P------EEYS------------ECLRK-ADG-EA-----------LIALERERFATDHDELTR 186 (288)
T ss_dssp HTTHHHHHHHHHC---H------HHHH------------HHHHH-CCH-HH-----------HHHHHHHHHSSCHHHHHH
T ss_pred HHhccHHHHHHHH---H------HHHH------------HHHHH-hhc-CC-----------HHHHHHHHHccCHHHHHH
Confidence 9999999864111 1 0000 11110 000 00 001233455678999999
Q ss_pred HHHHhCCCCCCchhhhhhhhcc
Q 046235 209 LVAKENKTTLPSAGLFIIRYHS 230 (294)
Q Consensus 209 ~Vlk~n~stLP~eaL~mIRyHS 230 (294)
.+++. -.||++...+||+|-
T Consensus 187 ~ll~~--W~lp~~i~~aI~~Hh 206 (288)
T 3ljx_A 187 MLLTD--WGFPQVFIDALQLSQ 206 (288)
T ss_dssp HHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHH--CCCCHHHHHHHHHHc
Confidence 99986 479999999999993
No 8
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=89.16 E-value=0.43 Score=42.26 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=73.1
Q ss_pred HhcCCCCccccHHHHHHHH--------------HhhhcCCCCCC--Cch-HHHHHHHHHHHHH---hh--------CCCC
Q 046235 69 EYGKLNRVEMSIWECCELL--------------NEFVDESDPDL--DEP-QIEHLLQTAEAIR---KD--------YPNE 120 (294)
Q Consensus 69 ~~~~~~~~~MsI~EA~e~L--------------n~LvDeSDPD~--dl~-qi~H~lQTAEaiR---~d--------~p~p 120 (294)
-+.++.+.--||.+|+-.| .++++...|-. .+. -..|.+.+|..++ +. ..++
T Consensus 68 ~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~vA~~a~~la~~~~~~~~~~~~~~ 147 (281)
T 3i7a_A 68 ALYSRGVPAENINSAVTRIGLTQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNY 147 (281)
T ss_dssp TTTCSSSCCCSHHHHHHHHCTTTHHHHHHHHTTGGGSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCH
T ss_pred HHhCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCH
Confidence 3445667788999999887 12333332221 112 3588888875544 22 2456
Q ss_pred CchhhhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccc
Q 046235 121 DWLHLTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMS 200 (294)
Q Consensus 121 dW~qLtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mS 200 (294)
+=.-++||+||+||+..+... +.+| +.+. ++.. ++ -.+.
T Consensus 148 ~~~~laGLLHdiGkl~l~~~~----------~~~~------------~~l~------~~~~------------~~-~~~~ 186 (281)
T 3i7a_A 148 DTLTLAGLVHNIGALPVLTEA----------EAHP------------EMFT------TIEH------------LR-SLVR 186 (281)
T ss_dssp HHHHHHHHHTTTTHHHHHHHH----------HHCG------------GGCC------CHHH------------HH-HHHH
T ss_pred HHHHHHHHHHHCCHHHHHHhH----------HhhH------------HHhc------ChHH------------HH-HHHh
Confidence 778899999999999753111 0111 1111 0000 11 2234
Q ss_pred cCcchHHHHHHHhCCCCCCchhhhhhhhccc
Q 046235 201 WGHDDYMYLVAKENKTTLPSAGLFIIRYHSF 231 (294)
Q Consensus 201 WGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 231 (294)
..|.+.=+.+++. -.+|++...+||+|-=
T Consensus 187 ~~H~~iGa~ll~~--w~lp~~i~~ai~~Hh~ 215 (281)
T 3i7a_A 187 KMQGPIGRAVLKS--WDFAPEVMEVVERWAD 215 (281)
T ss_dssp HHHHHHHHHHHHH--TTCCHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHH--CCCCHHHHHHHHHHcC
Confidence 5699999999987 4799999999999853
No 9
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=85.40 E-value=0.65 Score=40.32 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHH---HHHHH-HhhC-CCCCchhhhhhhccccc
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQ---TAEAI-RKDY-PNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQ---TAEai-R~d~-p~pdW~qLtGliHDLGK 134 (294)
|.++.+.+...+...++.- .+.|.+. +|..| .+.. .+++-+.+++|+||+||
T Consensus 7 i~~~~~~v~~~~~~~~~~H---~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk 63 (225)
T 2qgs_A 7 IKKAYEYMKSFHQHDTTGH---DIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVD 63 (225)
T ss_dssp HHHHHHHHHHHTTTCSSCH---HHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhcCCCcc---CHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCC
Confidence 3444455555555444443 4566655 45556 5433 47788999999999997
No 10
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=83.53 E-value=0.78 Score=40.63 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=71.6
Q ss_pred CCCCccccHHHHHHHHH--------------hhhcCCCCCCCchH-HHHHHHHHHHHHhh----CCCCCchhhhhhhccc
Q 046235 72 KLNRVEMSIWECCELLN--------------EFVDESDPDLDEPQ-IEHLLQTAEAIRKD----YPNEDWLHLTGLIHDL 132 (294)
Q Consensus 72 ~~~~~~MsI~EA~e~Ln--------------~LvDeSDPD~dl~q-i~H~lQTAEaiR~d----~p~pdW~qLtGliHDL 132 (294)
++.+.--||.+|+-.|= ..+.. .|..++.. ..|.+.+|..++.- ..+++=.-++||+||+
T Consensus 62 ~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdi 140 (275)
T 3m1t_A 62 GCSREVGTIDDAVVRLGMQTLRTLVIASAVVGAVPK-VEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSI 140 (275)
T ss_dssp ----CCCSHHHHHHHHCHHHHHHHHHHHHHHHHCCC-CTTCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 34566778999988761 12222 22333433 47999888766531 2356778899999999
Q ss_pred cchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchHHHHHHH
Q 046235 133 GKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDYMYLVAK 212 (294)
Q Consensus 133 GKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEYlY~Vlk 212 (294)
||++....+ |+.. . .|. +..+ +. .+. .-.+.-.+...|.+.=+.+++
T Consensus 141 Gkl~l~~~~---p~~~------~-------~i~--~~~~--~~--~~~-----------~~~E~~~lg~~H~~vGa~ll~ 187 (275)
T 3m1t_A 141 GELLIVNGD---PAVA------A-------TIS--AAVA--DG--ADR-----------NLMEKELLGYDNAEIGALLAQ 187 (275)
T ss_dssp HHHHHHHHC---HHHH------H-------HHH--HHHH--TT--CCH-----------HHHHHHHHSSCHHHHHHHHHH
T ss_pred cHHHHHHHC---HHHH------H-------HHH--HHHh--CC--CCH-----------HHHHHHHHCCCHHHHHHHHHH
Confidence 999864111 1110 0 000 0000 00 000 112334455679999999999
Q ss_pred hCCCCCCchhhhhhhhcc
Q 046235 213 ENKTTLPSAGLFIIRYHS 230 (294)
Q Consensus 213 ~n~stLP~eaL~mIRyHS 230 (294)
. -.||++....||||-
T Consensus 188 ~--W~lp~~i~~aI~~Hh 203 (275)
T 3m1t_A 188 S--WKFTPHLVKGIQFQN 203 (275)
T ss_dssp H--TTCCHHHHHHHHTTT
T ss_pred H--CCCCHHHHHHHHHhC
Confidence 7 479999999999984
No 11
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=82.15 E-value=1 Score=39.57 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccch
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDY-PNEDWLHLTGLIHDLGKV 135 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKl 135 (294)
|..+.+.+.+.....||.-++.-+.-...+|..|-+.. .+++-+.+++|+||+||.
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 7 IEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHhhcCCCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44455556666666677766666666677777776543 467889999999999983
No 12
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=79.74 E-value=1.3 Score=37.74 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh-CCCCCchhhhhhhccccchh
Q 046235 82 ECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKD-YPNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 82 EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d-~p~pdW~qLtGliHDLGKll 136 (294)
++.+.+...+...|+.-++.-+.-.+++|..|.+. -.+++-+.+.+|+||+||.-
T Consensus 9 ~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 34444445554445555555555556666666653 25778889999999999853
No 13
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=79.53 E-value=1.4 Score=37.51 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccch
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDY-PNEDWLHLTGLIHDLGKV 135 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKl 135 (294)
+.++.+.+.+.....|+..+..-+......|..|.+.. .+++-+.++||+||+|+-
T Consensus 15 ~~~~~~~v~~~~~~~~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDIg~~ 71 (220)
T 2pq7_A 15 REILNIVREAFKDYDDPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRP 71 (220)
T ss_dssp HHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCc
Confidence 44555566655544444444333333334444444432 366788999999999874
No 14
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=78.93 E-value=1.7 Score=38.29 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccchh
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDY-PNEDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKll 136 (294)
|..+.+.+.+.....||.-++.-+.-...+|..|-+.. .+++-+.+++|+||+||.-
T Consensus 7 i~~~~~~v~~~l~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~k 64 (223)
T 3dto_A 7 LQSAEAWVKKQLMDEYSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDK 64 (223)
T ss_dssp HHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC--
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccccc
Confidence 44555556666666667666666666677777775442 4667889999999999853
No 15
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=78.65 E-value=0.96 Score=39.47 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccc
Q 046235 78 MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDY-PNEDWLHLTGLIHDLGK 134 (294)
Q Consensus 78 MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGK 134 (294)
+.|.++.+.+...+...++.-++.-+.-.+++|..|.+.. .+++-+.+.+|+||+||
T Consensus 10 ~~i~~~~~~v~~~~~~~~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3455566666666655555555555555566677776532 57788899999999998
No 16
>3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A
Probab=77.65 E-value=1.2 Score=40.40 Aligned_cols=46 Identities=33% Similarity=0.497 Sum_probs=33.9
Q ss_pred CCCCCCCchHHHHHHHHHHHHHh---------------hCCC-----CCchhhhhhhccccchhcccCC
Q 046235 93 ESDPDLDEPQIEHLLQTAEAIRK---------------DYPN-----EDWLHLTGLIHDLGKVLLHPDF 141 (294)
Q Consensus 93 eSDPD~dl~qi~H~lQTAEaiR~---------------d~p~-----pdW~qLtGliHDLGKll~l~~~ 141 (294)
.|+.+- .|.+.|++-||+..+. ..|- .+|+...|++||+||.- +.|
T Consensus 18 ks~~~~-~~L~~HllDvAava~~L~~~~~~~~r~~la~~~g~~~~~~~~~~~~~~~lHDiGK~~--~~f 83 (265)
T 3sk9_A 18 KSGNPF-HPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWGLPEEGALAWAAALVGLHDLGKAS--PVF 83 (265)
T ss_dssp BSSSTT-SBHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHHHHHTTTTGGGCS--GGG
T ss_pred cCCCCc-ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccccc--HHH
Confidence 344443 8899999999988664 1232 36899999999999995 445
No 17
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=75.80 E-value=1.6 Score=38.76 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=72.1
Q ss_pred HhcCCCCccccHHHHHHHHH-----hhh------cC--CCCC---CCch-HHHHHHHHHHHHHhh---C--CCCCchhhh
Q 046235 69 EYGKLNRVEMSIWECCELLN-----EFV------DE--SDPD---LDEP-QIEHLLQTAEAIRKD---Y--PNEDWLHLT 126 (294)
Q Consensus 69 ~~~~~~~~~MsI~EA~e~Ln-----~Lv------De--SDPD---~dl~-qi~H~lQTAEaiR~d---~--p~pdW~qLt 126 (294)
.+..+.+.--||.+|+..|- +++ +. +++. .+.. -..|.+.+|..+++- . .+++=.-++
T Consensus 75 ~~~~~~~~i~si~~Av~~LG~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hs~~va~~a~~la~~~~~~~~e~a~~a 154 (297)
T 1vqr_A 75 PYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKIDVSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPC 154 (297)
T ss_dssp GGGTCTTCCCSHHHHHHHHCHHHHHHHHHCCCTTCCCCCCCGGGTCCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34456666789999998772 221 11 1111 1122 347877776655432 1 234566789
Q ss_pred hhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcchH
Q 046235 127 GLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHDDY 206 (294)
Q Consensus 127 GliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHDEY 206 (294)
||+||+||+.....+....+ +.++..... + | .+-.-.+.-.+...|.+.
T Consensus 155 GLLHDIGkl~l~~~~p~~~~-------------------~~~il~~~~---------~-~--~~l~~~E~~~~g~~H~~i 203 (297)
T 1vqr_A 155 AMLLRLGIVIFSNFLIQNHK-------------------DKDFLAFLN---------K-N--ENLALAENEFLGVDHISF 203 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------------HHHHHHHHH---------H-H--CCHHHHHHHHTSSCHHHH
T ss_pred HHHHHccHHHHHHHChhhhh-------------------HHHHHHHHH---------c-C--CCHHHHHHHHHCCCHHHH
Confidence 99999999985311100000 000000000 0 0 000113344555679999
Q ss_pred HHHHHHhCCCCCCchhhhhhhhcc
Q 046235 207 MYLVAKENKTTLPSAGLFIIRYHS 230 (294)
Q Consensus 207 lY~Vlk~n~stLP~eaL~mIRyHS 230 (294)
=+.+++.. .+|++....||+|-
T Consensus 204 Ga~ll~~w--~lp~~i~~aI~~Hh 225 (297)
T 1vqr_A 204 LGFLLHRW--NFDDVLIESICFVR 225 (297)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTTT
T ss_pred HHHHHHHC--CCCHHHHHHHHHhc
Confidence 99999874 79999999999994
No 18
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=73.95 E-value=1.6 Score=39.95 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=28.1
Q ss_pred CcchHHHHHHHhCCCCCCchhhhhhhhccccccccccccccccChh
Q 046235 202 GHDDYMYLVAKENKTTLPSAGLFIIRYHSFYALHRADAYKHLMNEE 247 (294)
Q Consensus 202 GHDEYlY~Vlk~n~stLP~eaL~mIRyHSFYpwH~~gaY~hL~n~~ 247 (294)
.|.++=|.++.. +..+|++++.+||+|- -.|--.| =..|..++
T Consensus 231 ~H~~~G~~~ll~-~~~~~~~v~~~i~~HH-Er~dGsG-P~gl~g~~ 273 (328)
T 3tm8_A 231 KHPIEGAQKVQD-KKHFDQTVINIIGQHE-ETINGTG-PKGLREKD 273 (328)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHHTT-CCTBSCS-TTCCBGGG
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHhc-CCCCCCC-CCCCCccc
Confidence 388999994443 3679999999999992 1233345 44454433
No 19
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=72.15 E-value=1.7 Score=41.58 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=74.1
Q ss_pred hcCCCCccccHHHHHH-HH--H---------hhhcC---C-C-CCCCchHHHHHHHHHHHHHh---hCC-----CCCchh
Q 046235 70 YGKLNRVEMSIWECCE-LL--N---------EFVDE---S-D-PDLDEPQIEHLLQTAEAIRK---DYP-----NEDWLH 124 (294)
Q Consensus 70 ~~~~~~~~MsI~EA~e-~L--n---------~LvDe---S-D-PD~dl~qi~H~lQTAEaiR~---d~p-----~pdW~q 124 (294)
|.++.+.--||.+|+- +| + .+.+. . + +..-..-..|.+.+|..++. ..+ +++=.-
T Consensus 230 ~y~~~~~I~si~~Av~rlLG~~~v~~l~~~~~l~~~~~~~~~~~~~~~~~w~hs~~~A~~a~~LA~~~~~~~~~~~~~af 309 (457)
T 3mem_A 230 FYAAAGRVHSVHDAVSRVLGFDLVMNLAMGLALGRALKHPQDHPDGYVDYWQQAIWQAQSAGILASMMPRGQRPLFGLAY 309 (457)
T ss_dssp TTGGGCCCCCHHHHHHTTTCHHHHHHHHHHHHHHTTSCCCSCCCTTSCCHHHHHHHHHHHHHHHHHHSCGGGCCCHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 3345567789999997 43 1 11221 1 1 11112346899988876653 222 445678
Q ss_pred hhhhhccccchhcccCCCCCCCceeecCceeeecccCCCcccccccccCCCCCCccCCcCCCccCCCCCccccccccCcc
Q 046235 125 LTGLIHDLGKVLLHPDFGELPQWAVVGDTFPVGCAFDESIVHHKYFKENPDYNNPAFNAKYGAYSEGRGLDNVFMSWGHD 204 (294)
Q Consensus 125 LtGliHDLGKll~l~~~g~~pQW~vvGDTfpVGC~f~~~iv~~e~F~~NPD~~~p~YnT~~GiY~p~CGLdnV~mSWGHD 204 (294)
++||+||+||+++...+ |+. |. .| .+..+.||... -.-.++-.+...|.
T Consensus 310 laGLLhDIGkl~l~~~~---p~~------~~-------~i--~~~~~~~~~~~-------------~~~~E~~~lg~~H~ 358 (457)
T 3mem_A 310 LAGLLHNFGHLVLAQVF---PPH------FK-------LV--CRSLEVSPHID-------------SSVIEHYLLGITRE 358 (457)
T ss_dssp HHHHHTTTHHHHHHHHS---HHH------HH-------HH--HHHHHHCTTSC-------------HHHHHHHHHSSCHH
T ss_pred HHHHHHHhhHHHHHHHC---HHH------HH-------HH--HHHHHhcCCCC-------------HHHHHHHHHcCCHH
Confidence 99999999999964111 110 00 00 00001122110 00123445667899
Q ss_pred hHHHHHHHhCCCCCCchhhhhhhhcc
Q 046235 205 DYMYLVAKENKTTLPSAGLFIIRYHS 230 (294)
Q Consensus 205 EYlY~Vlk~n~stLP~eaL~mIRyHS 230 (294)
|.=+.+++. -.||++-...||||-
T Consensus 359 ~vGa~Ll~~--W~lP~~i~~aI~~HH 382 (457)
T 3mem_A 359 QIAAQLMEN--WGMPDEVTLAIRYQK 382 (457)
T ss_dssp HHHHHHHHH--TTCCHHHHHHHHHTT
T ss_pred HHHHHHHHH--cCCCHHHHHHHHHhc
Confidence 999999987 479999999999993
No 20
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=69.39 E-value=1.7 Score=42.39 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=27.4
Q ss_pred hHHHHHHH-H---HHHHHhhCCCC-----Cchhhhhhhccccchhc
Q 046235 101 PQIEHLLQ-T---AEAIRKDYPNE-----DWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 101 ~qi~H~lQ-T---AEaiR~d~p~p-----dW~qLtGliHDLGKll~ 137 (294)
.-++|.|. + |.++++.||-- +=+-..||+||+||++.
T Consensus 75 GLLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIGKl~t 120 (393)
T 3kq5_A 75 SLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV 120 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccchhee
Confidence 45789998 5 67788888642 14455679999999974
No 21
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=48.17 E-value=9.5 Score=32.76 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHH---HHhhCCCCCc-----hhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEA---IRKDYPNEDW-----LHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEa---iR~d~p~pdW-----~qLtGliHDLGKll 136 (294)
.+..+|.+++|-. +-. ++.-|+ .-..+|+||++.+.
T Consensus 37 EsVAeHS~~vA~iA~~la~-~~~vd~~~~~r~~~maL~HDl~E~~ 80 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILAL-KSGESVEKACKAATAALFHDLHEAR 80 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHhh-hcCCChhHHHHHHHHHHHcchHHhh
Confidence 4567899988875 433 255666 45679999999988
No 22
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=44.64 E-value=30 Score=29.38 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhcCC-CCCC-CchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccc
Q 046235 80 IWECCELLNEFVDES-DPDL-DEPQIEHLLQTAEAIRKDYPNEDW-LHLTGLIHDL 132 (294)
Q Consensus 80 I~EA~e~Ln~LvDeS-DPD~-dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDL 132 (294)
|.+|+++-....... ..+. ..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 7 l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDv 62 (178)
T 3nr1_A 7 LLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDT 62 (178)
T ss_dssp HHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 445555554443322 2232 578899999999999766343354 5678899985
No 23
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=43.76 E-value=34 Score=29.05 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhcCCC-CC-CCchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccc
Q 046235 80 IWECCELLNEFVDESD-PD-LDEPQIEHLLQTAEAIRKDYPNEDW-LHLTGLIHDL 132 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSD-PD-~dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDL 132 (294)
|.+|+++-.......- .+ +..|-|.|.+++|+.+..+.+-.|- ...+||+||.
T Consensus 9 l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDv 64 (179)
T 3nqw_A 9 FMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDV 64 (179)
T ss_dssp HHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhH
Confidence 5566666655544332 23 5688999999999999855342233 4458899985
No 24
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=42.68 E-value=9.3 Score=33.99 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=25.0
Q ss_pred CCCCCchHHHHHHHHHHHHHhhC-CCCCchhhhhhhccccch
Q 046235 95 DPDLDEPQIEHLLQTAEAIRKDY-PNEDWLHLTGLIHDLGKV 135 (294)
Q Consensus 95 DPD~dl~qi~H~lQTAEaiR~d~-p~pdW~qLtGliHDLGKl 135 (294)
|+.-++.-+.-.+.+|..|.+.. .+++-+.+.+|+||+||.
T Consensus 22 ~~~H~~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 22 DAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp -----CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred CCCccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 44444555555556666665433 477889999999999995
No 25
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=42.10 E-value=12 Score=35.37 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHHHHhh---CCCC--Cchhhhhhhccccchhc
Q 046235 100 EPQIEHLLQTAEAIRKD---YPNE--DWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d---~p~p--dW~qLtGliHDLGKll~ 137 (294)
-.-++|.+.+|...|+- .+-+ .-..++||+||+|+.-+
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~pf 91 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPF 91 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSS
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcccc
Confidence 44578888888776642 2322 46789999999999873
No 26
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=41.43 E-value=10 Score=32.72 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHH-------hhCC---CCCchhhhhhhccccchhc
Q 046235 100 EPQIEHLLQTAEAIR-------KDYP---NEDWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 100 l~qi~H~lQTAEaiR-------~d~p---~pdW~qLtGliHDLGKll~ 137 (294)
-+..+|.+++|-... +.+| +++=..+.||+||+|+++.
T Consensus 30 EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~ 77 (201)
T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLT 77 (201)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccC
Confidence 456789998885432 2333 3334455699999999983
No 27
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=41.28 E-value=9.2 Score=33.67 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHhhCC-CCC--chhhhhhhccccchh
Q 046235 100 EPQIEHLLQTAEAIRKDYP-NED--WLHLTGLIHDLGKVL 136 (294)
Q Consensus 100 l~qi~H~lQTAEaiR~d~p-~pd--W~qLtGliHDLGKll 136 (294)
.+.-+|.+++|-..---.+ .-| =.-..+|+|||+.++
T Consensus 44 ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~ 83 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECI 83 (204)
T ss_dssp CBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhh
Confidence 4567899988876554322 123 345668999999987
No 28
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} PDB: 3s4l_A
Probab=40.06 E-value=13 Score=33.96 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.4
Q ss_pred Cchhhhhhhccccchhc
Q 046235 121 DWLHLTGLIHDLGKVLL 137 (294)
Q Consensus 121 dW~qLtGliHDLGKll~ 137 (294)
+++-++++.||+||.--
T Consensus 57 ~ll~~a~llHDiGKa~~ 73 (244)
T 3m5f_A 57 EFMKILIKLHDIGKASK 73 (244)
T ss_dssp HHHHHHHHHTTGGGGBH
T ss_pred HHHHHHHHHcccccCCH
Confidence 55778999999999973
No 29
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=37.03 E-value=31 Score=33.26 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHHhhhcC-------CCCCCCchHHHHHHHHHHHHH
Q 046235 63 VKRMREEYGKLNRVEMSIWECCELLNEFVDE-------SDPDLDEPQIEHLLQTAEAIR 114 (294)
Q Consensus 63 v~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDe-------SDPD~dl~qi~H~lQTAEaiR 114 (294)
.++...+|...-|.+-++.+|++.|+.|-.+ .+...+.-.+.+++++|++|-
T Consensus 443 l~~~m~~~~gi~R~~~~L~~a~~~l~~l~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~ 501 (540)
T 1chu_A 443 LRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIV 501 (540)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHHHHHHHHHHHHTTBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccCHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 4556677888889899999999999877432 222223457889999999873
No 30
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=33.90 E-value=32 Score=22.06 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.3
Q ss_pred cccCcchHHHHHHHhCCCCCCchhhhhhhhccc
Q 046235 199 MSWGHDDYMYLVAKENKTTLPSAGLFIIRYHSF 231 (294)
Q Consensus 199 mSWGHDEYlY~Vlk~n~stLP~eaL~mIRyHSF 231 (294)
-||--..+--+|||. -|+|+|-|.|
T Consensus 6 kswkckafkqrvlkr--------llamlrqhaf 30 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKR--------LLAMLRQHAF 30 (30)
T ss_dssp SCSCCCHHHHHHHHH--------HHHHHHTCCC
T ss_pred cchhHHHHHHHHHHH--------HHHHHHHhcC
Confidence 478888888899986 6999999977
No 31
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=28.08 E-value=80 Score=26.78 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhcCCC---CccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhh
Q 046235 59 TCDFVKRMREEYGKLN---RVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKD 116 (294)
Q Consensus 59 Tvdfv~~~~~~~~~~~---~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d 116 (294)
|-+=..++|++|-.-- -++.-||+|+..--+++...| ++||.+|-..
T Consensus 34 Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~D-----------l~tAQ~Ilda 83 (137)
T 2ksn_A 34 TDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESND-----------HELAQAIIDG 83 (137)
T ss_dssp SHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHH
Confidence 5555778999997654 578899999998887776555 5788888766
No 32
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=27.86 E-value=39 Score=29.82 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHHhhCCCCCc-hhhhhhhccccchh
Q 046235 99 DEPQIEHLLQTAEAIRKDYPNEDW-LHLTGLIHDLGKVL 136 (294)
Q Consensus 99 dl~qi~H~lQTAEaiR~d~p~pdW-~qLtGliHDLGKll 136 (294)
-.+.-+|.+++|.....-+|.-++ ..+.+|+||++.++
T Consensus 53 ~eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~~ 91 (207)
T 2gz4_A 53 AFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEYV 91 (207)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHHH
T ss_pred CccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHhh
Confidence 366789999999877643332222 56778999999988
No 33
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=27.32 E-value=23 Score=33.77 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHH-HHhhCCCCCchhhhhhhc-cccchh
Q 046235 101 PQIEHLLQTAEA-IRKDYPNEDWLHLTGLIH-DLGKVL 136 (294)
Q Consensus 101 ~qi~H~lQTAEa-iR~d~p~pdW~qLtGliH-DLGKll 136 (294)
...+|++++... |..+.+.+.++-|++|+| |+||-.
T Consensus 266 ~v~~h~L~~~d~~i~~~~~~~~~L~lAALLH~di~K~~ 303 (415)
T 3aql_A 266 RIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETA 303 (415)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHhHhcCcchhhhh
Confidence 456888887544 666667788999999999 999964
No 34
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=25.30 E-value=54 Score=31.44 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHHHhhCCCCCchhhhhhhccc
Q 046235 80 IWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDL 132 (294)
Q Consensus 80 I~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~p~pdW~qLtGliHDL 132 (294)
|.+|+++-.......-..+..|-|.|.+.+|+.+..-..+++ ...+||+||.
T Consensus 28 l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~-~i~AALLHDv 79 (393)
T 1vj7_A 28 VKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAV-TVACGFLHDV 79 (393)
T ss_dssp HHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHH-HHHHHHHTTH
T ss_pred HHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHH-HHHHHHhhhH
Confidence 566777666554333333557889999999999886523333 6678999995
No 35
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=23.08 E-value=53 Score=30.86 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCccccHHHHHHHHHhhhcCCCCCCCchHHHHHHHHHHHH
Q 046235 63 VKRMREEYGKLNRVEMSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAI 113 (294)
Q Consensus 63 v~~~~~~~~~~~~~~MsI~EA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEai 113 (294)
.++...+|...-|.+-++.+|++.|+.|-.+ ++++|+.|
T Consensus 398 l~~~m~~~~g~~r~~~~l~~~~~~~~~~~~~------------~~~~a~~~ 436 (472)
T 2e5v_A 398 IRRINWENVGIIRNEEKLVKAINTYSSSTQN------------EAIISYLT 436 (472)
T ss_dssp HHHHHHHHSSSSBCHHHHHHHHHHHTTCCCH------------HHHHHHHH
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 4556677788889999999999999988532 78888776
No 36
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=21.40 E-value=27 Score=33.33 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=13.7
Q ss_pred CCchhhhhhhccccchh
Q 046235 120 EDWLHLTGLIHDLGKVL 136 (294)
Q Consensus 120 pdW~qLtGliHDLGKll 136 (294)
++-....||+||+|+.-
T Consensus 98 ~~l~~~a~LlHDiGh~P 114 (376)
T 2dqb_A 98 EDLTEAIALSHDLGHPP 114 (376)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 45677899999999864
No 37
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP: c.1.12.7
Probab=20.21 E-value=49 Score=33.40 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHHHHhhCCCC----------Cc---h---hhhhhhccccchh
Q 046235 98 LDEPQIEHLLQTAEAIRKDYPNE----------DW---L---HLTGLIHDLGKVL 136 (294)
Q Consensus 98 ~dl~qi~H~lQTAEaiR~d~p~p----------dW---~---qLtGliHDLGKll 136 (294)
|..|.+..+-+-||+||+.||+. .| | ++--|+-||||+=
T Consensus 396 t~~P~~~~a~~fa~~i~~~~P~~~LaYN~SPSFnW~~~~~d~~~~~f~~~l~~~G 450 (538)
T 1dqu_A 396 SKLPDYKQAKEFADGVHAVWPEQKLAYNLSPSFNWKKAMPRDEQETYIKRLGALG 450 (538)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCEEEEECCSSSCGGGTSCHHHHHSHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHhCCCceEEecCCcchhhhhhCCHHHHHHHHHHHHhcC
Confidence 45688899999999999999853 34 2 6667777777763
No 38
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.10 E-value=23 Score=34.06 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=10.1
Q ss_pred hhhhhhhccccchh
Q 046235 123 LHLTGLIHDLGKVL 136 (294)
Q Consensus 123 ~qLtGliHDLGKll 136 (294)
..++||+||+|+-=
T Consensus 89 ~~~AaLlHDiGh~P 102 (410)
T 2q14_A 89 VQAAILLHDIGHGP 102 (410)
T ss_dssp HHHHHHHTTTTCCT
T ss_pred HHHHHHHhccCCCc
Confidence 46778888888743
Done!