BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046237
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04244|Y4200_ARATH Uncharacterized protein At4g02000 OS=Arabidopsis thaliana
GN=At4g02000 PE=2 SV=1
Length = 314
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 18/144 (12%)
Query: 1 VDQRRILCTRPWSFNRCLFVLTEPTGIGDFSKQNLNFCSFWIQLHKLPLMSMTKVVGLLF 60
+D +L PW +N FV T + + + L W+Q+ +PL+ + + L
Sbjct: 6 IDLLSVLRREPWLYNNW-FVTTHRWEV-NLTFHLLTSIELWVQMRGIPLLYVCEETALEI 63
Query: 61 GSMIGEVEEVD----KGVKINITRPLMR-GLTVQLE---------GEENLSTVEVYYERL 106
+G++ +D +I R +R G+T +L GE L + YERL
Sbjct: 64 AHELGKILTLDFHDSTTTQIAYIRVRIRFGITDRLRFFQRIIFDFGEAAL--ISFQYERL 121
Query: 107 PDFCFQRGRIGHVFRECPYLKSSP 130
C R+ H CPY + P
Sbjct: 122 RRICSSCFRMTHHRNSCPYRQIEP 145
>sp|B8FX50|UPPP_DESHD Undecaprenyl-diphosphatase OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=uppP PE=3 SV=1
Length = 278
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 65 GEVEEVDKGVKINITRPLMRGLTVQLEGEENLSTVEVYYERLPDFCFQRG 114
G + VD+ +K+N++ M V ++ L+ V +Y+++L F F RG
Sbjct: 28 GHMILVDEFIKLNMSAAFMEMFFVVIQLGAILAVVLLYWKKLNPFTFDRG 77
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 110 CFQRGRIGHVFRECPYLKSSP 130
CF GR GH+ +ECP K SP
Sbjct: 1449 CFICGREGHIKKECPQFKGSP 1469
>sp|P54572|MAO1_BACSU Probable NAD-dependent malic enzyme 1 OS=Bacillus subtilis
(strain 168) GN=yqkJ PE=3 SV=1
Length = 439
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 49 LMSMTKVVGLLFGSMIGEVEEVDKGVKINITRPLMRGLTVQLEGEENLSTV 99
L + +GLL G IGEVE V G N T MR +TVQ+E EE L V
Sbjct: 21 LGRVATAIGLL-GGDIGEVETVKVGP--NYT---MRNITVQVENEEQLQEV 65
>sp|P22443|CP19A_RAT Cytochrome P450 19A1 OS=Rattus norvegicus GN=Cyp19a1 PE=2 SV=1
Length = 508
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 28 GDFSKQNLNFCSFWIQLHKLPLMSMTKVVGLLFGSMIGEVEEVDKGVKINI-----TRPL 82
GD +K+N+N C + + MS+T V LL +I E EV+ + I R +
Sbjct: 289 GDLTKENVNQCILEMLIAAPDTMSVTLYVMLL---LIAEYPEVETAILKEIHTVVGDRDI 345
Query: 83 MRGLTVQLEGEENLSTVEVYYERLPDFCFQRGRIGHVFRECPYLKSSPTNFILII 137
G L+ EN + Y+ + D +R V P K TN IL I
Sbjct: 346 RIGDVQNLKVVENFINESLRYQPVVDLVMRRALEDDVIDGYPVKKG--TNIILNI 398
>sp|P28649|CP19A_MOUSE Cytochrome P450 19A1 OS=Mus musculus GN=Cyp19a1 PE=2 SV=1
Length = 503
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 28 GDFSKQNLNFCSFWIQLHKLPLMSMTKVVGLLFGSMIGEVEEVDKGVKINITRPLMRGLT 87
GD +K+N+N C + + MS+T LL ++ E EV+ + I ++
Sbjct: 289 GDLTKENVNQCILEMLIAAPDTMSVTLYFMLL---LVAEYPEVEAAILKEI-HTVVGDRD 344
Query: 88 VQLEGEENLSTVEVY------YERLPDFCFQRGRIGHVFRECPYLKSSPTNFILII 137
+++E +NL VE + Y+ + D +R V P K TN IL I
Sbjct: 345 IKIEDIQNLKVVENFINESMRYQPVVDLVMRRALEDDVIDGYPVKKG--TNIILNI 398
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 107 PDFCFQRGRIGHVFRECPYLKSS 129
P CF G+IGH R CP K S
Sbjct: 1109 PRSCFTCGKIGHFSRNCPQNKKS 1131
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 107 PDFCFQRGRIGHVFRECPYLKSS 129
P CF G+IGH R CP K S
Sbjct: 1110 PRSCFTCGKIGHFSRNCPQNKKS 1132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.144 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,649,042
Number of Sequences: 539616
Number of extensions: 1912591
Number of successful extensions: 4808
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4802
Number of HSP's gapped (non-prelim): 11
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)