Query 046237
Match_columns 137
No_of_seqs 113 out of 350
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 17:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046237.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046237hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dsq_A Nucleic acid binding pr 97.5 5.5E-05 1.9E-09 38.7 1.9 24 107-130 2-25 (26)
2 1nc8_A Nucleocapsid protein; H 97.0 0.00035 1.2E-08 36.5 1.9 21 107-127 6-26 (29)
3 1a6b_B Momulv, zinc finger pro 96.9 0.00049 1.7E-08 38.8 2.3 22 107-128 10-31 (40)
4 1u6p_A GAG polyprotein; MLV, A 96.4 0.0015 5.2E-08 39.4 2.1 22 107-128 23-44 (56)
5 2hqh_E Restin; beta/BETA struc 96.3 0.0015 5E-08 33.2 1.3 21 107-127 3-23 (26)
6 3nyb_B Protein AIR2; polya RNA 96.2 0.0026 8.9E-08 41.2 2.4 24 107-130 46-69 (83)
7 2ec7_A GAG polyprotein (PR55GA 95.5 0.0068 2.3E-07 35.2 2.1 20 107-126 6-25 (49)
8 2ihx_A Nucleocapsid (NC) prote 95.5 0.0059 2E-07 37.0 1.9 20 107-126 4-23 (61)
9 2a51_A Nucleocapsid protein; s 95.4 0.0063 2.2E-07 33.5 1.6 18 109-126 2-19 (39)
10 2ec7_A GAG polyprotein (PR55GA 95.3 0.0087 3E-07 34.7 2.0 21 108-128 28-48 (49)
11 2ysa_A Retinoblastoma-binding 95.3 0.0048 1.6E-07 37.0 0.8 19 108-126 8-26 (55)
12 2bl6_A Nucleocapsid protein P1 95.2 0.007 2.4E-07 33.0 1.4 18 109-126 2-19 (37)
13 2a51_A Nucleocapsid protein; s 95.2 0.0085 2.9E-07 33.0 1.7 19 107-125 21-39 (39)
14 1a1t_A Nucleocapsid protein; s 95.2 0.0077 2.6E-07 35.6 1.6 21 106-126 11-31 (55)
15 1cl4_A Protein (GAG polyprotei 95.2 0.012 4.2E-07 35.3 2.5 27 106-132 29-55 (60)
16 2bl6_A Nucleocapsid protein P1 95.0 0.0081 2.8E-07 32.7 1.2 19 107-125 19-37 (37)
17 2ihx_A Nucleocapsid (NC) prote 94.8 0.013 4.3E-07 35.5 1.8 23 107-129 30-52 (61)
18 2cqf_A RNA-binding protein LIN 94.7 0.018 6.2E-07 35.1 2.5 18 108-125 30-47 (63)
19 1a1t_A Nucleocapsid protein; s 94.7 0.013 4.3E-07 34.6 1.7 21 108-128 34-54 (55)
20 2li8_A Protein LIN-28 homolog 94.5 0.022 7.5E-07 36.0 2.4 21 106-126 23-43 (74)
21 1cl4_A Protein (GAG polyprotei 93.9 0.01 3.6E-07 35.6 0.0 20 108-127 2-21 (60)
22 3ts2_A Protein LIN-28 homolog 93.5 0.032 1.1E-06 39.6 2.0 20 108-127 98-117 (148)
23 3nyb_B Protein AIR2; polya RNA 93.2 0.023 7.9E-07 36.7 0.8 22 105-126 3-24 (83)
24 2cqf_A RNA-binding protein LIN 93.1 0.036 1.2E-06 33.7 1.5 19 106-124 6-24 (63)
25 2pzo_E CAP-Gly domain-containi 93.0 0.036 1.2E-06 31.1 1.3 21 107-127 20-40 (42)
26 2li8_A Protein LIN-28 homolog 92.9 0.031 1.1E-06 35.2 1.1 22 107-128 46-67 (74)
27 3ts2_A Protein LIN-28 homolog 92.8 0.043 1.5E-06 39.0 1.7 24 107-130 119-142 (148)
28 3e2u_E CAP-Gly domain-containi 91.3 0.083 2.9E-06 29.7 1.4 21 107-127 20-40 (42)
29 2lli_A Protein AIR2; RNA surve 90.0 0.13 4.4E-06 35.0 1.8 20 106-125 104-123 (124)
30 2lli_A Protein AIR2; RNA surve 86.3 0.34 1.2E-05 32.8 2.0 21 107-127 64-84 (124)
31 1ltl_A DNA replication initiat 78.2 4.3 0.00015 31.0 5.7 76 39-117 88-166 (279)
32 1ef4_A Subunit N, DNA-directed 69.5 1.5 5.2E-05 26.0 0.9 11 106-116 2-12 (55)
33 4ayb_N DNA-directed RNA polyme 67.8 1.8 6.1E-05 26.6 1.0 11 106-116 3-13 (66)
34 1twf_J DNA-directed RNA polyme 65.9 2 7E-05 26.6 1.0 14 106-119 3-17 (70)
35 3alr_A Nanos protein; zinc-fin 62.7 2.3 7.9E-05 28.4 0.8 25 108-132 72-99 (106)
36 2vl6_A SSO MCM N-TER, minichro 45.8 22 0.00076 26.7 4.0 73 39-116 95-177 (268)
37 2jmo_A Parkin; IBR, E3 ligase, 43.5 11 0.00039 23.3 1.7 19 107-126 58-76 (80)
38 2w0t_A Lethal(3)malignant brai 40.5 8.9 0.0003 21.5 0.8 15 108-122 7-21 (43)
39 2yqp_A Probable ATP-dependent 32.8 14 0.00046 22.0 0.7 17 108-126 20-36 (60)
40 1l3k_A Heterogeneous nuclear r 31.7 72 0.0025 21.5 4.6 68 3-71 68-135 (196)
41 3j20_Y 30S ribosomal protein S 31.0 17 0.00056 20.7 0.9 12 104-115 16-27 (50)
42 4afm_A Endoglucanase CEL5A; hy 28.8 38 0.0013 22.5 2.5 38 17-62 56-98 (134)
43 2kwq_A Protein MCM10 homolog; 27.2 22 0.00076 23.0 1.1 27 101-129 58-85 (92)
44 3pr9_A FKBP-type peptidyl-prol 26.1 76 0.0026 22.0 3.9 22 64-85 115-137 (157)
45 2k8i_A SLYD, peptidyl-prolyl C 24.2 84 0.0029 22.1 3.9 28 63-91 105-133 (171)
46 2k4x_A 30S ribosomal protein S 23.4 27 0.00093 20.2 0.9 12 104-115 15-26 (55)
47 2kr7_A FKBP-type peptidyl-prol 23.0 47 0.0016 22.8 2.3 27 63-90 110-137 (151)
48 4dt4_A FKBP-type 16 kDa peptid 22.7 95 0.0032 21.9 3.9 23 63-85 129-152 (169)
49 1eik_A RNA polymerase subunit 20.6 93 0.0032 19.3 3.0 29 43-71 32-60 (77)
50 1znf_A 31ST zinc finger from X 20.1 34 0.0012 14.7 0.7 10 107-116 1-10 (27)
No 1
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.46 E-value=5.5e-05 Score=38.70 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=18.2
Q ss_pred CccccCCcccccCCCcCCCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKSSP 130 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~~~ 130 (137)
+..||.||..||.+++|+.+..+|
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~~~~ 25 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEXXXX 25 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC----
T ss_pred CCeeEeCCCCCcccccCCCccccc
Confidence 356999999999999999887654
No 2
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=96.98 E-value=0.00035 Score=36.50 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=18.3
Q ss_pred CccccCCcccccCCCcCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~ 127 (137)
..-|++||..||..++|+.+.
T Consensus 6 ~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSS
T ss_pred CCEEEECCccccCHhHCcccc
Confidence 456999999999999998764
No 3
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.92 E-value=0.00049 Score=38.79 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred CccccCCcccccCCCcCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKS 128 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~ 128 (137)
..-|++||..||-+++||....
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCeeeECCCCCcchhhCcCCcc
Confidence 3679999999999999999764
No 4
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.41 E-value=0.0015 Score=39.35 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.3
Q ss_pred CccccCCcccccCCCcCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKS 128 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~ 128 (137)
..-|+.||..||-.++||....
T Consensus 23 ~~~C~~Cge~GH~ardCp~~~~ 44 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKKPR 44 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTCCC
T ss_pred CCcceeCCCCCcccccCcCCcc
Confidence 3679999999999999998763
No 5
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=96.29 E-value=0.0015 Score=33.20 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.9
Q ss_pred CccccCCcccccCCCcCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~ 127 (137)
..||..|..+||...+|+...
T Consensus 3 RpYCe~CE~FGH~t~~C~d~e 23 (26)
T 2hqh_E 3 RPYCEICEMFGHWATNCNDDE 23 (26)
T ss_dssp -CEETTTTEESSCGGGCCTTC
T ss_pred CccchHHHHhCcccccCCccc
Confidence 479999999999999997653
No 6
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.0026 Score=41.23 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.2
Q ss_pred CccccCCcccccCCCcCCCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKSSP 130 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~~~ 130 (137)
..+|++||.-||..++|+....+.
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r~s~ 69 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKRSSR 69 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCCSCS
T ss_pred CCeecccCCCCcCcccCCccccCc
Confidence 379999999999999999987653
No 7
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=95.53 E-value=0.0068 Score=35.15 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=13.0
Q ss_pred CccccCCcccccCCCcCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~ 126 (137)
+..|+.||..||..++|+.+
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCS
T ss_pred cCeeeecCCCCcChhhCcCC
Confidence 45577777777777777654
No 8
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=95.51 E-value=0.0059 Score=37.02 Aligned_cols=20 Identities=30% Similarity=0.738 Sum_probs=10.5
Q ss_pred CccccCCcccccCCCcCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~ 126 (137)
+..||.||..||..++|+..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTT
T ss_pred CCcccccCCCCeehhhCcCC
Confidence 34455555555555555543
No 9
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=95.40 E-value=0.0063 Score=33.55 Aligned_cols=18 Identities=39% Similarity=0.761 Sum_probs=16.2
Q ss_pred cccCCcccccCCCcCCCC
Q 046237 109 FCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 109 fC~~Cg~iGH~~~~C~~~ 126 (137)
.|++||..||..++|+.+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 599999999999999875
No 10
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=95.26 E-value=0.0087 Score=34.67 Aligned_cols=21 Identities=33% Similarity=0.854 Sum_probs=18.4
Q ss_pred ccccCCcccccCCCcCCCCCC
Q 046237 108 DFCFQRGRIGHVFRECPYLKS 128 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~~~~ 128 (137)
..|+.||..||..++|+....
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~~ 48 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQA 48 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSCC
T ss_pred CeeCcCCCcCCccCCCcCCCC
Confidence 579999999999999997653
No 11
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.25 E-value=0.0048 Score=37.01 Aligned_cols=19 Identities=37% Similarity=0.873 Sum_probs=17.0
Q ss_pred ccccCCcccccCCCcCCCC
Q 046237 108 DFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~~ 126 (137)
..|+.||.-||-.++||..
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGG
T ss_pred CccccCCCcCcccccCCCC
Confidence 4799999999999999943
No 12
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=95.22 E-value=0.007 Score=32.96 Aligned_cols=18 Identities=28% Similarity=0.719 Sum_probs=15.7
Q ss_pred cccCCcccccCCCcCCCC
Q 046237 109 FCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 109 fC~~Cg~iGH~~~~C~~~ 126 (137)
.|++||..||..++|+.+
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 599999999999999864
No 13
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=95.19 E-value=0.0085 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.763 Sum_probs=17.0
Q ss_pred CccccCCcccccCCCcCCC
Q 046237 107 PDFCFQRGRIGHVFRECPY 125 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~ 125 (137)
...|+.||..||..++||.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 3689999999999999984
No 14
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=95.17 E-value=0.0077 Score=35.60 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=15.5
Q ss_pred cCccccCCcccccCCCcCCCC
Q 046237 106 LPDFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 106 lp~fC~~Cg~iGH~~~~C~~~ 126 (137)
-+..|+.||..||..++|+.+
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSC
T ss_pred CCcceeeeCCCCcChhhcCCC
Confidence 345788888888888888764
No 15
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=95.16 E-value=0.012 Score=35.28 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=22.1
Q ss_pred cCccccCCcccccCCCcCCCCCCCCCc
Q 046237 106 LPDFCFQRGRIGHVFRECPYLKSSPTN 132 (137)
Q Consensus 106 lp~fC~~Cg~iGH~~~~C~~~~~~~~~ 132 (137)
....|+.||..||.+++|+.......+
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~~~~~G~ 55 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSKTDNQGN 55 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTTSSSSC
T ss_pred CCcceeECCCCCCccCcCCCccccCCC
Confidence 457899999999999999988765444
No 16
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=94.97 E-value=0.0081 Score=32.72 Aligned_cols=19 Identities=32% Similarity=0.821 Sum_probs=16.9
Q ss_pred CccccCCcccccCCCcCCC
Q 046237 107 PDFCFQRGRIGHVFRECPY 125 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~ 125 (137)
+..|+.||..||..++|+.
T Consensus 19 ~~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 19 PKVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp BTTCSSCCCTTGGGGTTCC
T ss_pred cCeEccCCCcCCccCcCcC
Confidence 3689999999999999973
No 17
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=94.80 E-value=0.013 Score=35.51 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=19.0
Q ss_pred CccccCCcccccCCCcCCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKSS 129 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~~ 129 (137)
...|+.||..||.+++|+.....
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~~~ 52 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRDGN 52 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC--
T ss_pred CCeeCCCCCCCCCcCCCcCCCcC
Confidence 46799999999999999987643
No 18
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.73 E-value=0.018 Score=35.07 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=9.5
Q ss_pred ccccCCcccccCCCcCCC
Q 046237 108 DFCFQRGRIGHVFRECPY 125 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~ 125 (137)
..|+.||..||..++|+.
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPL 47 (63)
T ss_dssp SCCTTTCCSSSCTTTCTG
T ss_pred CccCCcCCcCCccCcCCC
Confidence 445555555555555554
No 19
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=94.73 E-value=0.013 Score=34.62 Aligned_cols=21 Identities=24% Similarity=0.694 Sum_probs=18.5
Q ss_pred ccccCCcccccCCCcCCCCCC
Q 046237 108 DFCFQRGRIGHVFRECPYLKS 128 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~~~~ 128 (137)
..|+.||..||..++|+....
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~~~ 54 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTERQA 54 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSSCC
T ss_pred CEeCCCCCcCCccCCCcCcCC
Confidence 579999999999999997653
No 20
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=94.46 E-value=0.022 Score=35.96 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=15.1
Q ss_pred cCccccCCcccccCCCcCCCC
Q 046237 106 LPDFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 106 lp~fC~~Cg~iGH~~~~C~~~ 126 (137)
.+..||+||..||..++|+..
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSC
T ss_pred CCCcccccCCcCcCcccCCCC
Confidence 445788888888888878753
No 21
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=93.87 E-value=0.01 Score=35.61 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=0.0
Q ss_pred ccccCCcccccCCCcCCCCC
Q 046237 108 DFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~~~ 127 (137)
..||.||..||..++|+...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp --------------------
T ss_pred CccccCCCCCcCHhhCcCCC
Confidence 36999999999999999864
No 22
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=93.48 E-value=0.032 Score=39.64 Aligned_cols=20 Identities=30% Similarity=0.685 Sum_probs=15.2
Q ss_pred ccccCCcccccCCCcCCCCC
Q 046237 108 DFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~~~ 127 (137)
.-|++||..||..++|+...
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~~ 117 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLPP 117 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSCC
T ss_pred CcccEeCCccchhhhCCCCC
Confidence 45888888888888887643
No 23
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.023 Score=36.67 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=16.9
Q ss_pred ccCccccCCcccccCCCcCCCC
Q 046237 105 RLPDFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 105 ~lp~fC~~Cg~iGH~~~~C~~~ 126 (137)
|-..+|+.||..||..++||..
T Consensus 3 ~k~~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 3 WKKVQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp ----CCSSSCCSSSCGGGCGGG
T ss_pred cccCCCCCCCCCCCccccCCCc
Confidence 3457899999999999999875
No 24
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.09 E-value=0.036 Score=33.71 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=17.0
Q ss_pred cCccccCCcccccCCCcCC
Q 046237 106 LPDFCFQRGRIGHVFRECP 124 (137)
Q Consensus 106 lp~fC~~Cg~iGH~~~~C~ 124 (137)
.+..||.||..||..++|+
T Consensus 6 r~~~C~~Cg~~GH~a~~C~ 24 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECK 24 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCC
T ss_pred CCCcccccCCCCcChhhCC
Confidence 3568999999999999997
No 25
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=93.01 E-value=0.036 Score=31.08 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.9
Q ss_pred CccccCCcccccCCCcCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~ 127 (137)
..+|-.|..+||...+|+...
T Consensus 20 RpYCd~CEvFGH~t~~Cndde 40 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCNDDE 40 (42)
T ss_dssp -CEETTTTEESSCGGGCCTTC
T ss_pred CcccccccccCcccccCCccc
Confidence 479999999999999997653
No 26
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=92.95 E-value=0.031 Score=35.23 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.4
Q ss_pred CccccCCcccccCCCcCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKS 128 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~ 128 (137)
+..|+.||..||..++|+...+
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~~~~ 67 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPLKAQ 67 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTTGGG
T ss_pred CCccCCcCCcCCccCcCcCCcC
Confidence 4689999999999999998654
No 27
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.78 E-value=0.043 Score=38.96 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=19.8
Q ss_pred CccccCCcccccCCCcCCCCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLKSSP 130 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~~~~ 130 (137)
+.-|+.||..||..++||.....+
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~~~~~ 142 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLKAQQG 142 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTTTC--
T ss_pred CCcccccCCcCCEeccCcCCCCCC
Confidence 568999999999999999876543
No 28
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=91.27 E-value=0.083 Score=29.69 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=19.1
Q ss_pred CccccCCcccccCCCcCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~ 127 (137)
..+|-.|-++||...+|....
T Consensus 20 RpYCe~CEVFGH~t~eC~dde 40 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCNDDE 40 (42)
T ss_dssp CCEETTTTEESSCGGGCCTTC
T ss_pred CcccccceecccccccCCccc
Confidence 789999999999999998754
No 29
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=90.05 E-value=0.13 Score=34.97 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=18.1
Q ss_pred cCccccCCcccccCCCcCCC
Q 046237 106 LPDFCFQRGRIGHVFRECPY 125 (137)
Q Consensus 106 lp~fC~~Cg~iGH~~~~C~~ 125 (137)
-...|++||..||..++||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 35799999999999999986
No 30
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=86.26 E-value=0.34 Score=32.84 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.9
Q ss_pred CccccCCcccccCCCcCCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYLK 127 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~~ 127 (137)
...|+.||..||..+.||...
T Consensus 64 ~~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 64 KVQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CCSSSSSCSSCCCTTTCCCST
T ss_pred CccCCCCCcCCcchhhCCCcc
Confidence 367999999999999999764
No 31
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=78.20 E-value=4.3 Score=31.04 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=43.9
Q ss_pred eeeeeecCCCcccchhhHHhhhccccccEEEeee-eeEeeecCCCceeEEEeecCCcceEEEEEEe--eccCccccCCcc
Q 046237 39 SFWIQLHKLPLMSMTKVVGLLFGSMIGEVEEVDK-GVKINITRPLMRGLTVQLEGEENLSTVEVYY--ERLPDFCFQRGR 115 (137)
Q Consensus 39 ~vWVri~~LP~~~~~~~~~~~Ig~~iG~~l~vD~-rV~idv~kPL~~~v~i~~~~~~~~~~~~v~Y--E~lp~fC~~Cg~ 115 (137)
.+.||+.++|.. ..+-..=++.+|+.+.+.. -++..--+|........-..=|....+.+.+ ...|..|..|+.
T Consensus 88 ~~~vr~~~~~~~---~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~ 164 (279)
T 1ltl_A 88 DLNIRFSGISNV---IPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGG 164 (279)
T ss_dssp CCEEEEECCSCB---CCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCC
T ss_pred eEEEEEECCCCC---CCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCC
Confidence 689999999953 2333334688999999987 2233334444444444444323333333322 135778888876
Q ss_pred cc
Q 046237 116 IG 117 (137)
Q Consensus 116 iG 117 (137)
-|
T Consensus 165 ~~ 166 (279)
T 1ltl_A 165 RS 166 (279)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 32
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=69.54 E-value=1.5 Score=25.98 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=9.3
Q ss_pred cCccccCCccc
Q 046237 106 LPDFCFQRGRI 116 (137)
Q Consensus 106 lp~fC~~Cg~i 116 (137)
+|..||+||.+
T Consensus 2 iPVRCFTCGkv 12 (55)
T 1ef4_A 2 IPVRCLSCGKP 12 (55)
T ss_dssp CSSSCSCTTSC
T ss_pred CCeecCCCCCC
Confidence 58899999974
No 33
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=67.82 E-value=1.8 Score=26.61 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=9.3
Q ss_pred cCccccCCccc
Q 046237 106 LPDFCFQRGRI 116 (137)
Q Consensus 106 lp~fC~~Cg~i 116 (137)
+|..||+||.+
T Consensus 3 IPVRCFTCGkv 13 (66)
T 4ayb_N 3 IPIRCFTCGSL 13 (66)
T ss_dssp CCSBCTTTCCB
T ss_pred CCcccCCCcHh
Confidence 58899999974
No 34
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=65.93 E-value=2 Score=26.65 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=10.7
Q ss_pred cCccccCCccc-ccC
Q 046237 106 LPDFCFQRGRI-GHV 119 (137)
Q Consensus 106 lp~fC~~Cg~i-GH~ 119 (137)
+|..||+||.+ ||.
T Consensus 3 iPVRCFTCGkvi~~~ 17 (70)
T 1twf_J 3 VPVRCFSCGKVVGDK 17 (70)
T ss_dssp CCSBCTTTCCBCTTC
T ss_pred CCeecCCCCCChHHH
Confidence 58899999974 553
No 35
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=62.74 E-value=2.3 Score=28.36 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=19.8
Q ss_pred ccccCCcccc---cCCCcCCCCCCCCCc
Q 046237 108 DFCFQRGRIG---HVFRECPYLKSSPTN 132 (137)
Q Consensus 108 ~fC~~Cg~iG---H~~~~C~~~~~~~~~ 132 (137)
.-|-.||--| |+.+.||.......+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~s 99 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCS 99 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCc
Confidence 4688898888 999999987754443
No 36
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=45.79 E-value=22 Score=26.69 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred eeeeeecCCCcccchhhHHhhhccccccEEEeee-eeEeeecCCCceeEEEee--cCCcceEEEEEEe-------eccCc
Q 046237 39 SFWIQLHKLPLMSMTKVVGLLFGSMIGEVEEVDK-GVKINITRPLMRGLTVQL--EGEENLSTVEVYY-------ERLPD 108 (137)
Q Consensus 39 ~vWVri~~LP~~~~~~~~~~~Ig~~iG~~l~vD~-rV~idv~kPL~~~v~i~~--~~~~~~~~~~v~Y-------E~lp~ 108 (137)
.+.||+.++|... .+-..=++.+|+.+.+.. -++..--+|........- .+=|. .+.+.| ...|.
T Consensus 95 ~~~vr~~~~~~~~---~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~--~~~~~~~~~~~~~~~~P~ 169 (268)
T 2vl6_A 95 KVHVRIVGIPRVI---ELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQ--EFEWPEDEEMPEVLEMPT 169 (268)
T ss_dssp CCCEEEECCSCEE---CGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCC--EEESSTTSCCCTTCCCCS
T ss_pred cEEEEEECCCCCC---ccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCC--EEeeeecccCCCcccCCc
Confidence 5899999999542 222333688999999977 222333334433333443 32122 222221 13567
Q ss_pred cccCCccc
Q 046237 109 FCFQRGRI 116 (137)
Q Consensus 109 fC~~Cg~i 116 (137)
.|..|+.-
T Consensus 170 ~Cp~C~~~ 177 (268)
T 2vl6_A 170 ICPKCGKP 177 (268)
T ss_dssp BCTTTCCB
T ss_pred cCCCCCCC
Confidence 78777753
No 37
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=43.53 E-value=11 Score=23.27 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=16.8
Q ss_pred CccccCCcccccCCCcCCCC
Q 046237 107 PDFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 107 p~fC~~Cg~iGH~~~~C~~~ 126 (137)
..||+.|+.--|. ..|...
T Consensus 58 ~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 58 FAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCEETTTTEECCS-SCSSSC
T ss_pred CeeccccCccccC-Cccccc
Confidence 4699999999999 999875
No 38
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=40.48 E-value=8.9 Score=21.46 Aligned_cols=15 Identities=20% Similarity=0.166 Sum_probs=12.3
Q ss_pred ccccCCcccccCCCc
Q 046237 108 DFCFQRGRIGHVFRE 122 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~ 122 (137)
.-|..||.+||....
T Consensus 7 ~~CE~CG~~g~~~~F 21 (43)
T 2w0t_A 7 AVCEMCGIVGTREAF 21 (43)
T ss_dssp EECTTTCCEEETTTS
T ss_pred ehhhhhcCcchhhhh
Confidence 469999999998664
No 39
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.85 E-value=14 Score=22.05 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=12.4
Q ss_pred ccccCCcccccCCCcCCCC
Q 046237 108 DFCFQRGRIGHVFRECPYL 126 (137)
Q Consensus 108 ~fC~~Cg~iGH~~~~C~~~ 126 (137)
..|-.||++|-.. |..-
T Consensus 20 PvCvvCGryGeYI--Cd~T 36 (60)
T 2yqp_A 20 PICVVCGRYGEYI--CDKT 36 (60)
T ss_dssp CCCSSSSSCCSEE--CSSS
T ss_pred ceEEEecCcccee--ecCC
Confidence 4699999999763 5443
No 40
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=31.65 E-value=72 Score=21.50 Aligned_cols=68 Identities=9% Similarity=0.029 Sum_probs=38.5
Q ss_pred hhhhccCCCEEEcCCEEEEecCCCCCCCcccccceeeeeeeecCCCcccchhhHHhhhccccccEEEee
Q 046237 3 QRRILCTRPWSFNRCLFVLTEPTGIGDFSKQNLNFCSFWIQLHKLPLMSMTKVVGLLFGSMIGEVEEVD 71 (137)
Q Consensus 3 ~~~Vl~~gPW~~~~~~lil~~w~~~~~~~~~~l~~~~vWVri~~LP~~~~~~~~~~~Ig~~iG~~l~vD 71 (137)
..++++...-.++|..+.+....+........-..-.--+-+.|||... +++-+..+-+..|.+..+.
T Consensus 68 A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~v~ 135 (196)
T 1l3k_A 68 VDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDT-EEHHLRDYFEQYGKIEVIE 135 (196)
T ss_dssp HHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTC-CHHHHHHHHTTTSCEEEEE
T ss_pred HHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCC-CHHHHHHHHhcCCCeEEEE
Confidence 3455555556678888888776554332221111122346678999874 5555667777889987664
No 41
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.00 E-value=17 Score=20.73 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.1
Q ss_pred eccCccccCCcc
Q 046237 104 ERLPDFCFQRGR 115 (137)
Q Consensus 104 E~lp~fC~~Cg~ 115 (137)
+++..||..||.
T Consensus 16 ~~~~k~CP~CG~ 27 (50)
T 3j20_Y 16 IRKNKFCPRCGP 27 (50)
T ss_dssp ECSSEECSSSCS
T ss_pred EEecccCCCCCC
Confidence 468899999986
No 42
>4afm_A Endoglucanase CEL5A; hydrolase, carbohydrate binding module, family 5 glycoside H; HET: MSE; 1.25A {Eubacterium cellulosolvens}
Probab=28.75 E-value=38 Score=22.53 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=25.0
Q ss_pred CEEEEecCCCCCCCcccccceeeeeeeecCC-----CcccchhhHHhhhcc
Q 046237 17 CLFVLTEPTGIGDFSKQNLNFCSFWIQLHKL-----PLMSMTKVVGLLFGS 62 (137)
Q Consensus 17 ~~lil~~w~~~~~~~~~~l~~~~vWVri~~L-----P~~~~~~~~~~~Ig~ 62 (137)
-.|++.+|+.+..| ++|.||.-- -..|-.++++++.||
T Consensus 56 ivlifarw~~gskp--------~iwaqispyyvvdgtavftkeqiakaygs 98 (134)
T 4afm_A 56 IVLIFARWEHGSKP--------QIWAQISPYYVVDGTAVFTKEQIAKAYGS 98 (134)
T ss_dssp EEEEEEECCBTTBC--------CEEEEECCSEEETTEEEEEHHHHHHHHTS
T ss_pred EEEEEeeeccCCcc--------cceeeecceEEEcceEEecHHHHHHHhCC
Confidence 36889999998877 489998621 112334566666665
No 43
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=27.18 E-value=22 Score=22.98 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=17.7
Q ss_pred EEeeccCc-cccCCcccccCCCcCCCCCCC
Q 046237 101 VYYERLPD-FCFQRGRIGHVFRECPYLKSS 129 (137)
Q Consensus 101 v~YE~lp~-fC~~Cg~iGH~~~~C~~~~~~ 129 (137)
+.|+++|. -|.+||..- -+.+......
T Consensus 58 ~sl~r~P~~~C~~Cg~~~--wer~~M~~ek 85 (92)
T 2kwq_A 58 ISLDRLPKKHCSTCGLFK--WERVGMLKEK 85 (92)
T ss_dssp EESSSSCCSCCTTTCSCC--CEEECCCSSS
T ss_pred eEeeeCCCCCCCCCCCCc--eEEeeccccC
Confidence 44589998 999999762 3344444433
No 44
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=26.08 E-value=76 Score=22.00 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=18.1
Q ss_pred cccEEEeee-eeEeeecCCCcee
Q 046237 64 IGEVEEVDK-GVKINITRPLMRG 85 (137)
Q Consensus 64 iG~~l~vD~-rV~idv~kPL~~~ 85 (137)
.|++.+++. +|.+|.+.||-.+
T Consensus 115 ~~~V~~v~~~~V~vD~NHPLAG~ 137 (157)
T 3pr9_A 115 PGKIVSINSGRVLVDFNHELAGK 137 (157)
T ss_dssp EEEEEEEETTEEEEECSCTTTTC
T ss_pred CeEEEEEcCCEEEEECCCccCCC
Confidence 477888877 9999999999653
No 45
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=24.22 E-value=84 Score=22.07 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.9
Q ss_pred ccccEEEeee-eeEeeecCCCceeEEEeec
Q 046237 63 MIGEVEEVDK-GVKINITRPLMRGLTVQLE 91 (137)
Q Consensus 63 ~iG~~l~vD~-rV~idv~kPL~~~v~i~~~ 91 (137)
..|++.+++. +|.+|.+.||-.+ .+.++
T Consensus 105 ~~~~V~~v~~~~V~vD~NHPLAGk-~L~F~ 133 (171)
T 2k8i_A 105 VPVEITAVEDDHVVVDGNHMLAGQ-NLKFN 133 (171)
T ss_dssp EEEEEEEECSSEEEEESCCSSCCC-EEEEE
T ss_pred EEEEEEEEcCCEEEEeCCCCCCCC-eEEEE
Confidence 4667888877 9999999999654 45544
No 46
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.40 E-value=27 Score=20.20 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=10.4
Q ss_pred eccCccccCCcc
Q 046237 104 ERLPDFCFQRGR 115 (137)
Q Consensus 104 E~lp~fC~~Cg~ 115 (137)
+++..||..||-
T Consensus 15 ~~~~~fCPkCG~ 26 (55)
T 2k4x_A 15 VRKHRFCPRCGP 26 (55)
T ss_dssp CCSSCCCTTTTT
T ss_pred EEccccCcCCCC
Confidence 578899999996
No 47
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=23.00 E-value=47 Score=22.77 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=20.2
Q ss_pred ccccEEEeee-eeEeeecCCCceeEEEee
Q 046237 63 MIGEVEEVDK-GVKINITRPLMRGLTVQL 90 (137)
Q Consensus 63 ~iG~~l~vD~-rV~idv~kPL~~~v~i~~ 90 (137)
..|++.+++. +|.+|.+.||-.+ .+.+
T Consensus 110 ~~~~V~~v~~~~v~vD~NHPLAG~-~L~F 137 (151)
T 2kr7_A 110 IQAIIKDFSATHVMVDYNHPLAGK-TLAF 137 (151)
T ss_dssp EEEEEEEECSSEEEEEECCTTSCC-CEEE
T ss_pred EEEEEEEECCCEEEEECCCcCCCC-EEEE
Confidence 4677888877 9999999999653 3443
No 48
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=22.75 E-value=95 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=18.4
Q ss_pred ccccEEEeee-eeEeeecCCCcee
Q 046237 63 MIGEVEEVDK-GVKINITRPLMRG 85 (137)
Q Consensus 63 ~iG~~l~vD~-rV~idv~kPL~~~ 85 (137)
..|++.+++. +|.+|.+.||-.+
T Consensus 129 ~~~~V~~v~~~~V~vD~NHPLAGk 152 (169)
T 4dt4_A 129 MPGVIREINGDSITVDFNHPLAGQ 152 (169)
T ss_dssp EEEEEEEEETTEEEEECSCTTTTC
T ss_pred EEEEEEEEcCCEEEEeCCCccCCC
Confidence 4577888877 9999999999643
No 49
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=20.62 E-value=93 Score=19.31 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=25.2
Q ss_pred eecCCCcccchhhHHhhhccccccEEEee
Q 046237 43 QLHKLPLMSMTKVVGLLFGSMIGEVEEVD 71 (137)
Q Consensus 43 ri~~LP~~~~~~~~~~~Ig~~iG~~l~vD 71 (137)
.-..||.-+.+..+++.+|-+-|.++++-
T Consensus 32 ~~~qLP~I~~~DPvar~~G~k~GdVvkI~ 60 (77)
T 1eik_A 32 HPEQLPKIKTTDPVAKAIGAKRGDIVKII 60 (77)
T ss_dssp CTTTSCCCBTTSHHHHGGGCCTTCEEEEE
T ss_pred CHHHCCeeeCcCHhhHHhCCCCCCEEEEE
Confidence 44578998999999999999999999874
No 50
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.11 E-value=34 Score=14.67 Aligned_cols=10 Identities=20% Similarity=-0.011 Sum_probs=5.8
Q ss_pred CccccCCccc
Q 046237 107 PDFCFQRGRI 116 (137)
Q Consensus 107 p~fC~~Cg~i 116 (137)
|.-|..||.-
T Consensus 1 ~~~C~~C~k~ 10 (27)
T 1znf_A 1 XYKCGLCERS 10 (27)
T ss_dssp -CBCSSSCCB
T ss_pred CccCCCCCCc
Confidence 3457777754
Done!