BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046239
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
Query: 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVI 74
P + +VL+G+TG GKSATGNSILGRK F + + +T CE +++ K+ ++V V+
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 83
Query: 75 DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134
DTPG+FD+ + KEI++CI L G HA+L+V R+++EE A ++ FG+
Sbjct: 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKXFGE 142
Query: 135 KIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
+ + I++FT D L D L DYL E P+ ++
Sbjct: 143 RARSFXILIFTRKDDLGDT--NLHDYL-REAPEDIQ 175
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 10 WKPTS----PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
+ ++V +IDTP +F E + KE+ +C L+ G H VL++ + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPH-VLLLVTQLGRYTSQDQQAA 126
Query: 126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161
R+ +FG+ + IV+FT + L N +L DY+
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDL--NGGSLMDYM 160
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVID 75
S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC + ++V +ID
Sbjct: 2 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IID 60
Query: 76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK 135
TP +F E + KE+ +C L+ G H +L+V + R++ +++ A R+ +FG+
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLV-TQLGRYTSQDQQAAQRVKEIFGED 119
Query: 136 IFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
+ IV+FT + L N +L DY+ K L
Sbjct: 120 AMGHTIVLFTHKEDL--NGGSLMDYMHDSDNKAL 151
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPG 78
E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC + ++V +IDTP
Sbjct: 2 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPD 60
Query: 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
+F E + KE+ +C L+ G H +L+V + R++ +++ A R+ +FG+
Sbjct: 61 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLV-TQLGRYTSQDQQAAQRVKEIFGEDAMG 119
Query: 139 YMIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
+ IV+FT + L N +L DY+ K L
Sbjct: 120 HTIVLFTHKEDL--NGGSLMDYMHDSDNKAL 148
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 8/155 (5%)
Query: 10 WKPTS----PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
+ ++V +IDTP F E + KE+ +C L+ G H VL++ + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPH-VLLLVTQLGRYTSQDQQAA 126
Query: 126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDY 160
R+ +FG+ + IV+FT + L N +L DY
Sbjct: 127 QRVKEIFGEDAXGHTIVLFTHKEDL--NGGSLXDY 159
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG++ F + G++ VT C + D V V+DTP +
Sbjct: 22 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 80 FDSSAGSEFVG-KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
F S G +E C L+ G HA+L+V + RF+ +++ AV ++ +FG+ +
Sbjct: 81 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLV-TQLGRFTAQDQQAVRQVRDMFGEDVLK 139
Query: 139 YMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
+M++VFT + L +L DY+ + + L+
Sbjct: 140 WMVIVFTRKEDLAGG--SLHDYVSNTENRALR 169
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 3 ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
E++I+ K + TV++LG+ G GKS+T NS++G + + S G V ++
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59 EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSAR-N 115
M G +N+IDTPGL ++ +V + ++ I L I +L V
Sbjct: 80 TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 116 RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
R + ++ V + FGK+I+ ++V T + +E + E + + LK
Sbjct: 130 RVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDELLK 184
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 3 ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
E++I+ K + TV++LG+ G GKS+T NS++G + + S G V ++
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59 EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSAR-N 115
M G +N+IDTPGL ++ +V + ++ I L I +L V
Sbjct: 80 TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 116 RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
R + ++ V + FGK+I+ ++V T + +E + E + LK
Sbjct: 130 RVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 3 ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
E++I+ K + TV++LG+ G GKS+T NS++G + + S G V ++
Sbjct: 19 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 78
Query: 59 EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI-GLAKGGIHAVLVVFSARNRF 117
M G +N+IDTPGL ++ +V + ++ I G VL+ + +
Sbjct: 79 TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 128
Query: 118 SQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
+ +E + V + FGK+I+ ++V T + +E + E + LK
Sbjct: 129 AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 183
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 3 ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
E++I+ K + TV++LG+ G GKS+T NS++G + + S G V ++
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59 EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI-GLAKGGIHAVLVVFSARNRF 117
M G +N+IDTPGL ++ +V + ++ I G VL+ + +
Sbjct: 80 TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 118 SQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
+ +E + V + FGK+I+ ++V T + +E + E + LK
Sbjct: 130 AVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 17 IGERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTITCEMKTTVLKDGQVVN 72
+ T++++G+ G GKS+T NSI+G + S G V ++ + G +N
Sbjct: 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS------RAGFTLN 90
Query: 73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-RFSQEEEAAVHRLPTL 131
+IDTPGL + ++ + I+K L K I +L V R ++ +
Sbjct: 91 IIDTPGLIEGGYIND-MALNIIKSFLLDK-TIDVLLYVDRLDAYRVDNLDKLVAKAITDS 148
Query: 132 FGKKIFDYMIVVFTGGDY 149
FGK I++ IV T +
Sbjct: 149 FGKGIWNKAIVALTHAQF 166
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K A T ++ + + + + +DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKV--APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 67
Query: 82 S-SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
A EF+ +E+ + + ++AV+ V R+ + E+E L L GK +
Sbjct: 68 PMDALGEFMDQEVYEAL----ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 123
Query: 141 IVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
Y E+ K + L P+ L
Sbjct: 124 GNKLDAAKYPEEAMKAYHELLPEAEPRML 152
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDT 76
+ T+++ G+ G GKS+T NSI+G + S S + + + G +N+IDT
Sbjct: 37 VNSLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRS--RAGFTLNIIDT 94
Query: 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGKK 135
PGL + ++ I+K L K I +L V R ++ + FGK
Sbjct: 95 PGLIEGGYIND-XALNIIKSFLLDK-TIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG 152
Query: 136 IFDYMIVVFTGGDY 149
I++ IV T +
Sbjct: 153 IWNKAIVALTHAQF 166
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A A T ++ + DG +++IDT GL +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 82 SSAGSEFVGKE 92
+S E +G E
Sbjct: 68 ASDEVERIGIE 78
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A A T ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 82 SSAGSEFVGKE 92
+S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR+A A T ++ + DG +++IDT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLRE 64
Query: 82 SSAGSEFVGKE 92
+S E +G E
Sbjct: 65 ASDEVERIGIE 75
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 25/113 (22%)
Query: 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84
LG G + T N++L R+ G+TI + T+ + VN+IDTPG D A
Sbjct: 32 LGSVDKGTTRTDNTLLERQ--------RGITIQTGI-TSFQWENTKVNIIDTPGHMDFLA 82
Query: 85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRL-----PTLF 132
E+ + + + G I ++ SA++ + H L PT+F
Sbjct: 83 -------EVYRSLSVLDGAI----LLISAKDGVQAQTRILFHALRKMGIPTIF 124
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 17/78 (21%)
Query: 20 RTVVLLGRTGNGKSATGNSIL---GR-------------KAFKASAGSSGVTITCEMKTT 63
R +V+ GK+ T IL GR F G+TIT + T
Sbjct: 13 RNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC 72
Query: 64 VLKDGQVVNVIDTPGLFD 81
KD ++ N+IDTPG D
Sbjct: 73 FWKDHRI-NIIDTPGHVD 89
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 19 ERTVVLLGRTGNGKSATGNSI----LGRKAFKASAGSSGVTITCEMKTTVLKDGQV---V 71
E T++++G +G GKS NS+ L + + T+ E ++K+G V +
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 72 NVIDTPGLFDSSAGS 86
++DTPG D+ S
Sbjct: 68 TIVDTPGFGDAVDNS 82
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 19 ERTVVLLGRTGNGKSATGNSI----LGRKAFKASAGSSGVTITCEMKTTVLKDGQV---V 71
E T++++G +G GKS NS+ L + + T+ E ++K+G V +
Sbjct: 3 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 62
Query: 72 NVIDTPGLFDSSAGS 86
++DTPG D+ S
Sbjct: 63 TIVDTPGFGDAVDNS 77
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 45 FKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
F G+TIT + T KD ++ N+IDTPG D
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVD 89
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With
The Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of
4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of
4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (30s Subunit)
Length = 691
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 45 FKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
F G+TIT + T KD ++ N+IDTPG D
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVD 89
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With
Ef-G, Gdp And Fusidic Acid
Length = 691
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 45 FKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
F G+TIT + T KD ++ N+IDTPG D
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVD 89
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 45 FKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
F G+TIT + T KD ++ N+IDTPG D
Sbjct: 54 FMEQERERGITITAAVTTCFWKDHRI-NIIDTPGHVD 89
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 19 ERTVVLLGRTGNGKSATGNSI----LGRKAFKASAGSSGVTITCEMKTTVLKDGQV---V 71
E T++++G +G GKS NS+ L + + T+ E ++K+G V +
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 72 NVIDTPGLFDSSAGS 86
++DTPG D+ S
Sbjct: 91 TIVDTPGFGDAVDNS 105
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 54 VTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSA 113
V ++C+ VLKD ++ L D + ++ +IV C A G + L+ FS
Sbjct: 32 VLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDC--RAPGELEHGLITFST 89
Query: 114 RNRFS 118
RN +
Sbjct: 90 RNNLT 94
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 18 GERTVVLLGRTGNGKSATGNSI---LGRKAF 45
GER V LLG TG GK+ T + LGR A
Sbjct: 28 GERFVTLLGATGTGKTVTMAKVIEALGRPAL 58
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 29.3 bits (64), Expect = 1.2, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 18 GERTVVLLGRTGNGKSATGNSI---LGRKAF 45
GER V LLG TG GK+ T + LGR A
Sbjct: 27 GERFVTLLGATGTGKTVTMAKVIEALGRPAL 57
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVI 74
P G + L GR+ GKS+ NS++ RK ++ G T T ++ D ++ +
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YIINDE--LHFV 74
Query: 75 DTPG 78
D PG
Sbjct: 75 DVPG 78
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 108 LVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLED---YLGHE 164
L +AR+ QE +AA+ R + K I Y D++ DN ++ D L +
Sbjct: 260 LTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNN 319
Query: 165 CPK 167
PK
Sbjct: 320 LPK 322
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 108 LVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLED---YLGHE 164
L +AR+ QE +AA+ R + K I Y D++ DN ++ D L +
Sbjct: 260 LTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNN 319
Query: 165 CPK 167
PK
Sbjct: 320 LPK 322
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K S + + + + Q++ +DTPG+++
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQII-FLDTPGIYE 71
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S+ +G +V+ + +L + A + +E F K + +I
Sbjct: 72 PKK-SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQN----FIKPLNKPVI 126
Query: 142 VVFTGGD 148
VV D
Sbjct: 127 VVINKID 133
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
V ++G+ GKS N++LG K S + + + + Q++ +DTPG+++
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQII-FLDTPGIYE 70
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S+ +G +V+ + +L + A + +E F K + +I
Sbjct: 71 PKK-SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQN----FIKPLNKPVI 125
Query: 142 VVFTGGD 148
VV D
Sbjct: 126 VVINKID 132
>pdb|1YNP|A Chain A, Aldo-keto Reductase Akr11c1 From Bacillus Halodurans (apo
Form)
pdb|1YNP|B Chain B, Aldo-keto Reductase Akr11c1 From Bacillus Halodurans (apo
Form)
pdb|1YNQ|A Chain A, Aldo-Keto Reductase Akr11c1 From Bacillus Halodurans (Holo
Form)
pdb|1YNQ|B Chain B, Aldo-Keto Reductase Akr11c1 From Bacillus Halodurans (Holo
Form)
Length = 317
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 71 VNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE 122
+N +DT L++ +FVGK + KG +++ NRF Q +E
Sbjct: 62 INYLDTADLYNQGLNEQFVGKAL-------KGRRQDIILATKVGNRFEQGKE 106
>pdb|3GOV|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|A Chain A, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|C Chain C, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 155
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 54 VTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSA 113
V ++C+ VLKD ++ L D + ++ +IV C A G + L+ FS
Sbjct: 32 VLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDC--RAPGELEHGLITFST 89
Query: 114 RNRFS 118
RN +
Sbjct: 90 RNNLT 94
>pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 16/18 (88%)
Query: 65 LKDGQVVNVIDTPGLFDS 82
+ +G+++N++DTPGL D+
Sbjct: 53 MDNGEILNLLDTPGLLDA 70
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
TV+++GR GKS N ++ +K GVT ++ TV G+ ++DT G+F
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVT-RDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 81 DS 82
D+
Sbjct: 61 DN 62
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV 70
KP ++ R + G++G GKS+ N++LG + + S V+ + TT +
Sbjct: 207 KPLEEALTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF 266
Query: 71 V---NVIDTPGL 79
+VID+PG+
Sbjct: 267 PHGGDVIDSPGV 278
>pdb|3U4G|A Chain A, The Structure Of Cobt From Pyrococcus Horikoshii
Length = 337
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS 82
+++G + G + T +IL ++A S+ E+K V+K+G I+ GL D
Sbjct: 138 IVIGESTPGGTTTAQAILWALGYEAKTSSASPENPQELKEKVIKEGFKRVGIEKGGLKDK 197
Query: 83 --SAGSEFVGKEIVKCIGLAKG 102
A EF I +GL+ G
Sbjct: 198 PLEALKEFGDPXIATVLGLSLG 219
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In
Complex With Argyrin B
Length = 709
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 53 GVTITCEMKTTVLK------DGQVVNVIDTPGLFD 81
G+TIT TT K D VNVIDTPG D
Sbjct: 63 GITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVD 97
>pdb|1DIR|A Chain A, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|B Chain B, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|C Chain C, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|D Chain D, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DHR|A Chain A, Crystal Structure Of Rat Liver Dihydropteridine Reductase
Length = 241
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 55 TITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114
TI+ + T LK+G ++ + D + G +G G+AKG +H + + +
Sbjct: 113 TISSHLATKHLKEGGLLTLAGAKAALDGTPG--MIG------YGMAKGAVHQLCQSLAGK 164
Query: 115 NRFSQEEEAAVHRLP 129
N AA+ LP
Sbjct: 165 NSGMPSGAAAIAVLP 179
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 50/168 (29%), Positives = 66/168 (39%), Gaps = 36/168 (21%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTITCEMK---TTV------- 64
RTV L+G G+GK+ ++L + K G++ T E K TTV
Sbjct: 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL 69
Query: 65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAA 124
L G V ++D PG D FVG+ I A A LV SA +
Sbjct: 70 LFRGHRVFLLDAPGYGD------FVGE-----IRGALEAADAALVAVSAEAGV----QVG 114
Query: 125 VHRLPTLFGKKIFDYMIVVF---TGGDY---LEDNEKTLEDYLGHECP 166
R T+ + M+VV GGDY LED TL L + P
Sbjct: 115 TERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLRSTLGPILPIDLP 162
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 55 TITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114
TI+ + T LK+G ++ + D + G +G G+AKG +H + + +
Sbjct: 116 TISSHLATKHLKEGGLLTLAGAKAALDGTPG--MIG------YGMAKGAVHQLCQSLAGK 167
Query: 115 NRFSQEEEAAVHRLP 129
N AA+ LP
Sbjct: 168 NSGMPPGAAAIAVLP 182
>pdb|2FEX|A Chain A, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|B Chain B, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
pdb|2FEX|C Chain C, The Crystal Structure Of Dj-1 Superfamily Protein Atu0886
From Agrobacterium Tumefaciens
Length = 188
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 25 LGRTG--NGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS 82
LG TG N + TGN++ KA+ A G + + + DG VV +
Sbjct: 107 LGGTGVLNDVAHTGNALASHKAYPAYRGEA----HYRDQPRAVSDGGVV----------T 152
Query: 83 SAGSEFV--GKEIVKCIGLAKGGIHAVLVVFSARNR 116
+AGS V EI+K +GL A L +F+A +R
Sbjct: 153 AAGSAPVSFAVEILKSLGLFGPEAEAELQIFAAEHR 188
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTP 77
G +T+VL+G +G G+S N++L + K V T +DG+ + I T
Sbjct: 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVY---PVPYTTRPPRKSEEDGKEYHFISTE 74
Query: 78 GLFDSSAGSEFV 89
+ + + +EF+
Sbjct: 75 EMTRNISANEFL 86
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV-----VN 72
G + V ++G T GKS + + R + S + V T T L + +
Sbjct: 159 GGKDVYVVGCTNVGKS----TFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS 214
Query: 73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAK 101
+ DTPG+ + + +VGK+ +K I K
Sbjct: 215 LYDTPGIINHHQXAHYVGKQSLKLITPTK 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,430,009
Number of Sequences: 62578
Number of extensions: 218641
Number of successful extensions: 671
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 78
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)