BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046239
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1
Length = 353
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/150 (62%), Positives = 109/150 (72%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
+VL+GRTGNGKSATGNSI+ K FK+ SSGVT+ C V +G ++NVIDTPGLF
Sbjct: 44 NIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLF 103
Query: 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
D S +EF+GKEIVKC+ LA GG+HAVL+V S R R SQEEE + L LFG KI DY+
Sbjct: 104 DLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEEMVLSTLQVLFGSKIVDYL 163
Query: 141 IVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
IVVFTGGD LED+ TLEDYLG P LK
Sbjct: 164 IVVFTGGDVLEDDGMTLEDYLGDNMPDFLK 193
>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana
GN=PP2A3 PE=4 SV=1
Length = 463
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 110/150 (73%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
+ +VL+GRTGNGKS+TGN++LG K FK+ + GVT+ CEM ++DG ++NVIDTPGL
Sbjct: 6 KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65
Query: 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139
DS + + EI+ C+ +A+ GIHAVL+V SAR R S+EEE+ V+ L +FG +I DY
Sbjct: 66 CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEESTVNTLQCIFGSQILDY 125
Query: 140 MIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
IVVFTGGD LE++++TL+DY CP+ L
Sbjct: 126 CIVVFTGGDDLEEDDQTLDDYFRAGCPEFL 155
>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1
Length = 329
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
Query: 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVI 74
P + +VL+G+TG GKSATGNSILGRK F + + +T CE +++ K+ ++V V+
Sbjct: 26 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VV 84
Query: 75 DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134
DTPG+FD+ + KEI++CI L G HA+L+V R+++EE A ++ +FG+
Sbjct: 85 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKATEKILKMFGE 143
Query: 135 KIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
+ +MI++FT D L D L DYL E P+ ++
Sbjct: 144 RARSFMILIFTRKDDLGDT--NLHDYL-REAPEDIQ 176
>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2
SV=1
Length = 310
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 86/140 (61%), Gaps = 4/140 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
+VLLG+TG GKS+TGNSILGRKAF + + +T CE K + DG+ + V+DTPG+FD
Sbjct: 33 IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
+ KEI +C+ L G HA+L+V ++ EE A +L ++F KK +MI
Sbjct: 92 TEVPDADTQKEITRCVALTSPGPHALLLVIPL-GCYTVEEHKATRKLLSMFEKKARRFMI 150
Query: 142 VVFTGGDYLEDNEKTLEDYL 161
++ T D LED + + +YL
Sbjct: 151 LLLTRKDDLEDTD--IHEYL 168
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDT 76
I + +VLLG+TG GKS+TGNSILG K F + + +T CE + + DG+ + V+DT
Sbjct: 28 IPQLRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDT 86
Query: 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKI 136
PG+FD+ +EI + + L G HA+L+V R++ EE A ++ +FGK+
Sbjct: 87 PGIFDTEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKATQKILDMFGKQA 145
Query: 137 FDYMIVVFTGGDYLEDNEKTLEDYLGHECPK 167
+MI++ T D LED + + +YL + PK
Sbjct: 146 RRFMILLLTRKDDLEDTD--IHEYL-EKAPK 173
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG+GKSATGNSILGR+AF++ + VT T + T +G+ + VIDTP +F
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTREF-EGKELEVIDTPDIFS 164
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
E K+I C LA G HAVL+V R++ E++A L +FG I Y I
Sbjct: 165 PQNQPEATAKKI--CDLLASPGPHAVLLVIQV-GRYTAEDQAVARCLQEIFGNTILAYTI 221
Query: 142 VVFTGGDYLEDNEKTLEDYL 161
+VFT + L E +LE+Y+
Sbjct: 222 LVFTRKEDLA--EGSLEEYI 239
>sp|Q8BWF2|GIMA5_MOUSE GTPase IMAP family member 5 OS=Mus musculus GN=Gimap5 PE=2 SV=1
Length = 308
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 92/149 (61%), Gaps = 4/149 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNSIL R AF++ VT T + +T +G+ + V+DTP +F+
Sbjct: 29 ILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 87
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S A ++ + K+I C L G H +L+V + RF+ E+ AV + +FG + +MI
Sbjct: 88 SKAQNQDMDKDIGDCYLLCAPGPHVLLLV-TQLGRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 142 VVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
V+FT + LE EK+LE+++ H + L+
Sbjct: 147 VLFTRKEDLE--EKSLEEFVTHTDNRSLR 173
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 80/130 (61%), Gaps = 2/130 (1%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
+VL+G+TG+GKSAT N+ILG + F + + VT C+ K + G+ + V+DTPGLFD
Sbjct: 11 IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
+ + KEI +CI + G HA+++V R+++EE+ V + +FGK +M+
Sbjct: 70 TKESLDTTCKEISRCIISSCPGPHAIVLVLLL-GRYTEEEQKTVALIKAVFGKSAMKHMV 128
Query: 142 VVFTGGDYLE 151
++FT + LE
Sbjct: 129 ILFTRKEELE 138
>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1
Length = 307
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 10/157 (6%)
Query: 1 MGERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM 60
M E + + T P++ ++L+G+TG GKSATGNSILG+ F++ + VT TC++
Sbjct: 12 MAEGRSEDNLSATPPAL---RIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQV 68
Query: 61 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQE 120
KT +G+ V V+DTP +F+S A ++ + K I C L+ G H +L+V RF+ +
Sbjct: 69 KTGTW-NGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQ 126
Query: 121 EEAAVHRLPTLFGKKIFDYMIVVFT-----GGDYLED 152
+ A+ ++ +FG +++++FT GG L+D
Sbjct: 127 DTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDD 163
>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2
Length = 665
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 93/164 (56%), Gaps = 14/164 (8%)
Query: 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNV 73
S + E ++LLG+ +GKSATGN+ILG+ FK+ V C+ ++ VL++ +VV V
Sbjct: 5 SCQMSELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-V 63
Query: 74 IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG 133
IDTP LF S A +E + I C+ L+ +HA+L+V A F++E+E + +FG
Sbjct: 64 IDTPDLFSSIACAEDKQRNIQHCLELSAPSLHALLLVI-AIGHFTREDEETAKGIQQVFG 122
Query: 134 KKIFDYMIVVFT---------GGDYLEDN---EKTLEDYLGHEC 165
+ ++I+VFT D++E N ++ ++DY G C
Sbjct: 123 AEARRHIIIVFTRKDDLGDDLLQDFIEKNKPLKQLVQDYEGRYC 166
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPG-- 78
+VL+GR+G GKSATGNSILG F + + VT T + DGQ V V+DTP
Sbjct: 440 NIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTW-DGQEVVVVDTPSFN 498
Query: 79 -LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
+ D + +E+ +C+ + G ++VF RF++E++ AV +L +FG
Sbjct: 499 QMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQL-GRFTEEDKTAVAKLEAIFGADFT 557
Query: 138 DYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
Y I++FT + L LED++ + K L+
Sbjct: 558 KYAIMLFTRKEDL--GAGNLEDFMKNSDNKALR 588
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 81/152 (53%), Gaps = 9/152 (5%)
Query: 3 ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT 62
ER + +P E TV+L+G+ G GKSA GNSILGR+AF+ VT + ++
Sbjct: 231 ERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSES 290
Query: 63 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE 122
+ + V++ID P + + + + E+ K I G HA L+V + +++ +E
Sbjct: 291 RSWRKKK-VSIIDAPDI----SSLKNIDSEVRKHICT---GPHAFLLV-TPLGFYTKNDE 341
Query: 123 AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154
A + + FG+K F+YMI++ T + L D +
Sbjct: 342 AVLSTIQNNFGEKFFEYMIILLTRKEDLGDQD 373
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG+GKSATGNSILGR+ F++ + VT+ + + L +G+ + VIDTP +
Sbjct: 105 LLLVGKTGSGKSATGNSILGRQVFESKISARPVTMAFQKGSREL-EGKELEVIDTPDILS 163
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
E K+I C LA G HAVL+V R++ E++ A L +FG I Y I
Sbjct: 164 PQNQPEATAKKI--CDILASPGPHAVLLVIQV-GRYTTEDQEAARCLQEIFGNGILAYTI 220
Query: 142 VVFTGGDYLEDNEKTLEDYL 161
+VFT + L E +LE+Y+
Sbjct: 221 LVFTRKEELA--EGSLEEYI 238
>sp|Q9UG22|GIMA2_HUMAN GTPase IMAP family member 2 OS=Homo sapiens GN=GIMAP2 PE=1 SV=2
Length = 337
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 8/156 (5%)
Query: 10 WKPTS----PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL 65
W P + S E ++L+G+TG GKSA GNSIL ++AF++ GS +T TC
Sbjct: 9 WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAV 125
+ ++V +IDTP +F E + KE+ +C L+ G H +L+V + R++ +++ A
Sbjct: 69 GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLV-TQLGRYTSQDQQAA 126
Query: 126 HRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161
R+ +FG+ + IV+FT + L N +L DY+
Sbjct: 127 QRVKEIFGEDAMGHTIVLFTHKEDL--NGGSLMDYM 160
>sp|Q99MI6|GIMA3_MOUSE GTPase IMAP family member 3 OS=Mus musculus GN=Gimap3 PE=1 SV=2
Length = 301
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 4/149 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNS+L R AF++ VT T + +T +G+ + V+DTP +F+
Sbjct: 25 ILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTW-EGRSILVVDTPPIFE 83
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S A ++ + K+I C L G H +L+V + RF+ E+ AV + +FG + +MI
Sbjct: 84 SKAQNQDMDKDIGDCYLLCAPGPHVLLLV-TQLGRFTAEDVMAVRMVKEVFGVGVMRHMI 142
Query: 142 VVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
V+FT + L EK+LE+++ H + L+
Sbjct: 143 VLFTRKEDL--AEKSLEEFVTHTDNRSLR 169
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 14/155 (9%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+GRTG GKSATGNSILG+K F + G+ VT +C + + + Q V V+DTP +F
Sbjct: 6 LILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQ-VEVVDTPDIFS 64
Query: 82 SSAGSEFVG-KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140
S G E +C L+ G HA+L+V + RF+ ++ A+ + LFGK++
Sbjct: 65 SEIPRTDPGCVETARCFVLSAPGPHALLLV-TQLGRFTMQDSQALAAVKRLFGKQVMART 123
Query: 141 IVVFT-----GGDYLED-----NEKTLEDYLGHEC 165
+VVFT GD L+D + + L D + EC
Sbjct: 124 VVVFTRQEDLAGDSLQDYVHCTDNRALRDLVA-EC 157
>sp|Q75N62|GIMA8_MOUSE GTPase IMAP family member 8 OS=Mus musculus GN=Gimap8 PE=2 SV=1
Length = 688
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 9/154 (5%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
++LLGR+G GKSATGN+ILGR AF + + VT + + L D Q V V+DTP F
Sbjct: 477 NIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTL-DWQDVVVVDTPS-F 534
Query: 81 DSSAGSE----FVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKI 136
+ G+E + +EI C+ L + G+ ++V RF+QE+E V +L F + I
Sbjct: 535 IQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQL-GRFTQEDEVVVEQLEASFEENI 593
Query: 137 FDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
YMIV+FT + L D + L DY + K LK
Sbjct: 594 MKYMIVLFTRKEDLGDGD--LHDYTNNTKNKALK 625
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLG+ G GKSATGN+ILG+ F++ VT C+ ++ ++ QV+ VIDTP LF
Sbjct: 51 LLLLGKQGAGKSATGNTILGKAVFESKFSDHMVTDRCQSESVSVRGKQVI-VIDTPDLFS 109
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S + SE + + +C+ L H VL++ + +++E+ + + G K + +MI
Sbjct: 110 SLSCSEVRQQNLKQCLELLADD-HCVLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRHMI 168
Query: 142 VVFTGGDYLEDNEKTLEDYL 161
VVFT D L +E +L +Y+
Sbjct: 169 VVFTREDEL--DEDSLWNYI 186
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVI 74
P + E V+L+G+ G GKSA GNSILG++ FK + + G+ V +I
Sbjct: 280 PDMPELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLII 339
Query: 75 DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134
D+P + V G HA L+V + +++ + +FG+
Sbjct: 340 DSPEISSWKLDESAVKNHTFP-------GPHAFLLVTPLGSSLKSDDD-VFSIIKRIFGE 391
Query: 135 KIFDYMIVVFTGGDYLEDN 153
K + IV+FT + ED
Sbjct: 392 KFTKFTIVLFTRKEDFEDQ 410
>sp|Q8WWP7|GIMA1_HUMAN GTPase IMAP family member 1 OS=Homo sapiens GN=GIMAP1 PE=1 SV=1
Length = 306
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 88/152 (57%), Gaps = 5/152 (3%)
Query: 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79
R ++L+GRTG GKSATGNSILG++ F + G++ VT C + D V V+DTP +
Sbjct: 28 RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 86
Query: 80 FDSSAGSEFVG-KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
F S G +E C L+ G HA+L+V + RF+ +++ AV ++ +FG+ +
Sbjct: 87 FSSQVSKTDPGCEERGHCYLLSAPGPHALLLV-TQLGRFTAQDQQAVRQVRDMFGEDVLK 145
Query: 139 YMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
+M++VFT + L +L DY+ + + L+
Sbjct: 146 WMVIVFTRKEDLAGG--SLHDYVSNTENRALR 175
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 5/140 (3%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G+TG+GKSATGNSILGR F++ + VT T + ++ G+ + VIDTP +
Sbjct: 43 LILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWA-GKELEVIDTPNILS 101
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
E V I + I L+ G HAVL+V + RF+ E++ V RL +FG + + I
Sbjct: 102 PQVSPE-VADAICQAIVLSAPGPHAVLLV-TQLGRFTDEDQQVVRRLQEVFGVGVLGHTI 159
Query: 142 VVFTGGDYLEDNEKTLEDYL 161
+VFT + L +LEDY+
Sbjct: 160 LVFTRKEDLAGG--SLEDYV 177
>sp|Q8K3L6|GIMA5_RAT GTPase IMAP family member 5 OS=Rattus norvegicus GN=Gimap5 PE=2
SV=1
Length = 326
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G GKSATGNSIL R AF++ VT T + + +G+ V+DTP +F+
Sbjct: 47 ILLVGKSGCGKSATGNSILRRPAFESRLRGQSVTRTSQAEMGTW-EGRSFLVVDTPPIFE 105
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S ++ + K+I C + G H +L+V + R++ E+ AV + +FG + YMI
Sbjct: 106 SKIQNQDMDKDIGNCYLMCAPGPHVLLLV-TQLGRYTVEDAMAVRMVKQIFGVGVMRYMI 164
Query: 142 VVFTGGDYLEDNEKTLEDYLGH 163
V+FT + L D ++LE+++ H
Sbjct: 165 VLFTHKEDLAD--ESLEEFVTH 184
>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norvegicus GN=Gimap8 PE=2
SV=1
Length = 688
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 88/155 (56%), Gaps = 10/155 (6%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
++LLGR+G GKSATGN+ILGR AF + + VT + L D Q + V+DTP L
Sbjct: 476 NIILLGRSGVGKSATGNTILGRPAFVSQLRAQPVTSRSQSGRRTL-DWQDIVVVDTPSL- 533
Query: 81 DSSAGSE----FVGKEIVKC-IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK 135
+ +G+E + KEI +C + + G+ ++VF RF+QE+EA V +L F +
Sbjct: 534 NQMSGTEKNPAQLKKEIKQCLLQNCEEGMKVFVLVFQL-GRFTQEDEAVVEQLEASFEEN 592
Query: 136 IFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
I YMIV+FT + L D + L D+ + K LK
Sbjct: 593 IMKYMIVLFTRKEDLGDGD--LYDFTNNTKNKVLK 625
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 7/149 (4%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++LLG+ G GKSATGN+ILG+ F++ VT C+ ++ ++ QV+ VIDTP LF
Sbjct: 51 LLLLGKQGAGKSATGNTILGKAVFESRFSHHMVTKRCQSESVSVRGKQVI-VIDTPDLFS 109
Query: 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMI 141
S E + + +C+ L VL++ + ++E++ + + +FG + + +MI
Sbjct: 110 SLGCPEVQQQNLRQCLDLLADPY--VLLLVTPIGHSTEEDKKTIEGIQGVFGPQAYRHMI 167
Query: 142 VVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
VVFT D L E TL++++ E K LK
Sbjct: 168 VVFTREDEL--GEDTLQNHI--ESKKYLK 192
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 10 WKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ 69
W +P E V+L+G+ G GKSA GNSILG++ FK + L + +
Sbjct: 277 WDRDTP---ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTEAFASHSRLWNQK 333
Query: 70 VVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLP 129
+ID+P + V + G HA L+V + + ++ +
Sbjct: 334 KFLIIDSPEISSWKLDESDVKEHTFP-------GPHAFLLVTPLGSSL-KSGDSVFSIIK 385
Query: 130 TLFGKKIFDYMIVVFTGGDYLE 151
+FG+K + I++FT + E
Sbjct: 386 RIFGEKFIKFTIILFTRKEDFE 407
>sp|A5PKB7|GIMA6_BOVIN GTPase IMAP family member 6 OS=Bos taurus GN=GIMAP6 PE=2 SV=1
Length = 341
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
++L+G++G+GKSATGNSILGR+ F++ + VT + +G+ + VIDTP +
Sbjct: 96 LILVGKSGSGKSATGNSILGRRVFESKLSARPVTQAFQQGCRAW-EGRELQVIDTPDILS 154
Query: 82 SSAGSEFVGKEIVKCIGLAKGG----IHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
A G + +G A G +AVL+V + RF++E++ RL +FGK I
Sbjct: 155 PWA----AGWATAQGVGEAGTGSLPKQYAVLLV-TQLGRFTEEDQQVAGRLEEVFGKGIL 209
Query: 138 DYMIVVFTGGDYLEDNEKTLEDYL 161
I+VFT + L+ ++LE YL
Sbjct: 210 ARTILVFTRKEDLDG--RSLETYL 231
>sp|P0DJR0|GIMD1_HUMAN GTPase IMAP family member GIMD1 OS=Homo sapiens GN=GIMD1 PE=2 SV=1
Length = 217
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 14/171 (8%)
Query: 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCE----------MKT 62
T P+ + L G T +GKS+ GN +LG F +S VT C M+
Sbjct: 2 TDPNKMIINLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMRR 61
Query: 63 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSARNRFS-Q 119
L+ V V+DTPG S ++V +E+ + + +GG+H L+V A F Q
Sbjct: 62 GGLEVALQVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLVQRADVPFCGQ 121
Query: 120 EEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
E V + L G +Y ++FT + +E+ T + YL HE LK
Sbjct: 122 EVTDPVQMIQELLGHAWMNYTAILFTHAEKIEEAGLTEDKYL-HEASDTLK 171
>sp|E9PW74|GIMD1_MOUSE GTPase IMAP family member GIMD1 OS=Mus musculus GN=Gimd1 PE=3 SV=1
Length = 217
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT------ITCEMKTTVLKDGQ----V 70
+ + GRT +GKS+ GN +LG F +S VT +C + + + GQ
Sbjct: 10 NLAVFGRTQSGKSSAGNVLLGSADFYSSFAPGSVTKECSLGRSCHLHGFMRRGGQEISLQ 69
Query: 71 VNVIDTPGLFDSSAGSEFVGKEIVKCI--GLAKGGIHAVLVVFSAR-NRFSQEEEAAVHR 127
+ V+DTPG S + V +E+ K + + G+H L+V A F QE AV
Sbjct: 70 IQVLDTPGYPHSKLSTRCVKQEVKKALLHHFGQEGLHLALLVQRADVPFFGQEASNAVQL 129
Query: 128 LPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161
+ L G +YM V+FT + LE+ + E+YL
Sbjct: 130 MQELLGDSCKNYMAVLFTHAEELEEAGLSEEEYL 163
>sp|G3MZQ6|GIMD1_BOVIN GTPase IMAP family member GIMD1 OS=Bos taurus GN=GIMD1 PE=3 SV=1
Length = 216
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT------ITCEMKTTVLKDGQ----V 70
+ L G T +GKS+ GN ILG F +S VT +C ++ + + GQ
Sbjct: 9 NLALFGMTQSGKSSAGNIILGSTDFHSSFAPCSVTRDCSLGRSCHFRSFMRRGGQEVTLQ 68
Query: 71 VNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSARNRFS-QEEEAAVHR 127
V V+DTPG S + V +E+ + + + G+H L+V A QEE + V
Sbjct: 69 VQVLDTPGYPHSRLSKKHVRQEVREALAHHFGQEGLHLALLVQRADVPLCGQEESSPVQM 128
Query: 128 LPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161
+ L G +Y ++FT + +E+ ++YL
Sbjct: 129 IQELLGHTWMNYTAILFTHAEKIEEAGFNEDEYL 162
>sp|B0BMZ3|GIMD1_RAT GTPase IMAP family member GIMD1 OS=Rattus norvegicus GN=Gimd1 PE=2
SV=1
Length = 216
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV---------- 70
+ +LG+T +GKS+ GN +LG F + VT C + + G +
Sbjct: 9 NLAVLGKTQSGKSSAGNVLLGSADFYSRFAPGSVTKDCSLGRSCHIHGFMRRGGHEISLQ 68
Query: 71 VNVIDTPGLFDSSAGSEFVGKEIVKCI--GLAKGGIHAVLVVFSA-RNRFSQEEEAAVHR 127
+ V+DTPG S + V +E+ K + + G+H L+V A F QE +V
Sbjct: 69 IQVLDTPGYPHSKLSTRCVKQEVKKALEHHFGQEGLHLALLVHRADMPFFGQEASDSVQL 128
Query: 128 LPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161
+ L G +Y ++FT + +++ + E+YL
Sbjct: 129 IQELLGDSWKNYTAILFTHAEKIKEAGLSEEEYL 162
>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis
thaliana GN=At5g47260 PE=3 SV=2
Length = 948
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVN 72
TS S +T+ L+G TG+G++AT N+I G+K ++ ++ VT+ C+ D + N
Sbjct: 875 TSESHPIQTIDLVGTTGSGETATANNIQGKKVVQSGTHATVVTMECQTYKVFTPDCPINN 934
Query: 73 VIDTPG 78
+IDTPG
Sbjct: 935 MIDTPG 940
>sp|Q89A14|DER_BUCBP GTPase Der OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=der PE=3 SV=1
Length = 462
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
T+ L+GRT GKS N + G + ++ + +T + ++ + ++V +IDTPG+
Sbjct: 4 TIALIGRTNVGKSTLFNKLTGNRNDALASNHASLTRDRKHGFIIVNNTKIV-LIDTPGIN 62
Query: 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
+ S + KEI + + + V +V SARN+ ++ + L F KKIF
Sbjct: 63 EDSKKKISLDKEIFEQVKFSIKQADLVCLVVSARNKLMHKDVEIIEMLRK-FQKKIF 118
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTP 77
E V+LLGRTG GKS+T N++ G SS + + +G +N+IDTP
Sbjct: 150 NECNVLLLGRTGVGKSSTLNTVFG---IDIPVHSSESCTQDPFTYSRVVNGFKLNIIDTP 206
Query: 78 GLFDSSAGSEFVGKEIVKCIGLAKGG-IHAVLVVFS-ARNRFSQEEEAAVHRLPTLFGKK 135
G DS G ++K G IH VL V RF + +++ G +
Sbjct: 207 GFLDSQ-GELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQ 265
Query: 136 IFDYMIVVFT 145
++ VV T
Sbjct: 266 LWRNAAVVLT 275
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 3 ERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTITC 58
E++I+ K + TV++LG+ G GKS+T NS++G + + S G V ++
Sbjct: 20 EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSR 79
Query: 59 EMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG--LAKGGIHAVLVVFSAR-N 115
M G +N+IDTPGL ++ +V + ++ I L I +L V
Sbjct: 80 TM------GGFTINIIDTPGLVEAG----YVNHQALELIKGFLVNRTIDVLLYVDRLDVY 129
Query: 116 RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKPLK 170
R + ++ V + FGK+I+ ++V T + +E + E + LK
Sbjct: 130 RVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSKRSDSLLK 184
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTITCEMKTTVLKDGQVVNVID 75
+ TV+++G+ G GKS+T NS++G KA S S G+ T +T + G +N+ID
Sbjct: 36 VSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRT---RSGFTLNIID 92
Query: 76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR---NRFSQEEEAAVHRLPTLF 132
TPGL + +V + + I + ++++ R R + V + F
Sbjct: 93 TPGLIEGG----YVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAF 148
Query: 133 GKKIFDYMIVVFTGGDY 149
GK+I+ +V T +
Sbjct: 149 GKEIWKKSALVLTHAQF 165
>sp|Q3YRS0|ERA_EHRCJ GTPase Era OS=Ehrlichia canis (strain Jake) GN=era PE=3 SV=1
Length = 296
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83
++G T GKS N ++GRK A+ T M + + + IDTPG+F
Sbjct: 13 IVGTTNAGKSTLINMLVGRKV--AAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPK 70
Query: 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRL 128
E K IVK ++ GI V+++ +N ++ E + R+
Sbjct: 71 TKLE---KFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRI 112
>sp|Q31DJ0|MNME_THICR tRNA modification GTPase MnmE OS=Thiomicrospira crunogena (strain
XCL-2) GN=mnmE PE=3 SV=2
Length = 451
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTITCEMKTTVLKDGQVVNVIDTPG 78
+VV+LGR GKS+ N++ GR++ + AG++ + E++ DG ++V+DT G
Sbjct: 219 SVVILGRPNAGKSSLLNALSGRESAIVTDIAGTTRDIVKEEIQI----DGMPLHVLDTAG 274
Query: 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138
L +++ E +G ++ A +LV+ A E++A + ++P+ +
Sbjct: 275 LREATDAVEQIG---IQRAWAAIEEADRILVMVQANEAIHPEDQAILEKMPSHIPVTLIH 331
Query: 139 YMIVVFTGGDYLEDNEKTLEDYL 161
I + L +N+ E +L
Sbjct: 332 NKIDLIEKSPELSENDGETEIWL 354
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis
thaliana GN=TOC90 PE=1 SV=1
Length = 793
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
+++LG+TG GKSAT NSI G+ + A G E+ TV G V IDTPG
Sbjct: 169 ILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDRIEEVMGTV--SGVKVTFIDTPGFHP 226
Query: 82 SSAGSEFVGKEIVKCI 97
S+ S ++I+ I
Sbjct: 227 LSSSSTRKNRKILLSI 242
>sp|Q92JA9|ERA_RICCN GTPase Era OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=era PE=3 SV=1
Length = 339
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV--LKDGQVVNVIDTPG 78
+V ++GR +GKS N I+G K S + V T + T + LKD QV+ + DTPG
Sbjct: 54 SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 109
Query: 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
+F+ E K +V+C + VL++ + F V +L +L IF
Sbjct: 110 IFEPKGSLE---KAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNIVDKLRSLNIVPIF 165
>sp|A8GM80|ERA_RICAH GTPase Era OS=Rickettsia akari (strain Hartford) GN=era PE=3 SV=1
Length = 293
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 9/119 (7%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV--LKDGQVVNVIDTPG 78
+V ++GR +GKS N I+G K S + V T + T + LKD QV+ + DTPG
Sbjct: 8 SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 63
Query: 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137
+F+ E K +V+C + V+++ + F + +L +L IF
Sbjct: 64 IFEPKGSLE---KAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHDILDKLRSLNIVPIF 119
>sp|Q2GGZ1|ERA_EHRCR GTPase Era OS=Ehrlichia chaffeensis (strain Arkansas) GN=era PE=3
SV=1
Length = 296
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83
++G T GKS N ++G+K A+ T M + + + IDTPG+F
Sbjct: 13 IVGTTNAGKSTLINMLVGQKV--AAVTPKVQTTRVRMHAVLNNENVQLIFIDTPGIFSPK 70
Query: 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRL 128
E K IVK ++ GI V+++ +N ++ E + R+
Sbjct: 71 TKLE---KFIVKHAWMSLKGIENVILLLDVKNYLNKHIEKIISRI 112
>sp|Q92C22|RSGA1_LISIN Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=rsgA1 PE=3 SV=1
Length = 346
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 2 GERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTIT 57
G ++ D KP S T+VLLG +G GKS+ NS+ G K S S G T
Sbjct: 172 GFEALEADLKPNS------TLVLLGSSGVGKSSFINSLAGADLMKTSEIREDDSKGKHTT 225
Query: 58 CEMKTTVLKDGQVVNVIDTPGL 79
+ +L +G + +IDTPG+
Sbjct: 226 THREMHLLANGWI--IIDTPGM 245
>sp|Q15MS9|MNME_PSEA6 tRNA modification GTPase MnmE OS=Pseudoalteromonas atlantica
(strain T6c / ATCC BAA-1087) GN=mnmE PE=3 SV=1
Length = 460
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81
VV+ GR GKS+ N++ GR A +A +G T +K + DG +++IDT GL D
Sbjct: 225 VVIAGRPNAGKSSLLNALAGRDAAIVTA-IAGTTRDV-LKEHIHIDGMPLHIIDTAGLRD 282
Query: 82 SSAGSEFVGKE 92
SS E +G E
Sbjct: 283 SSDEVERIGIE 293
>sp|D2GU20|ERAL1_AILME GTPase Era, mitochondrial OS=Ailuropoda melanoleuca GN=ERAL1 PE=3
SV=1
Length = 437
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCE-MKTTVLKDGQVVNVIDTPGLF 80
VVLLG GKS N +LGRK F S T C+ + K+ QV+ ++DTPGL
Sbjct: 116 VVLLGAPNAGKSTLSNQLLGRKVFPVSKKVH--TTRCQALGVITEKEAQVI-LLDTPGLI 172
Query: 81 D 81
Sbjct: 173 S 173
>sp|Q8Y7F0|RSGA1_LISMO Putative ribosome biogenesis GTPase RsgA 1 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=rsgA1 PE=3 SV=1
Length = 346
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 2 GERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTIT 57
G ++ D KP S T++LLG +G GKS+ NS+ G K + S G T
Sbjct: 172 GFEALESDLKPNS------TLILLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGKHTT 225
Query: 58 CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92
+ +L +G + VIDTPG+ + G G E
Sbjct: 226 THREMHLLSNGWI--VIDTPGMREFGVGFNQAGLE 258
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDT 76
+ T++++G+ G GKS+T NSI+G + S S + + + G +N+IDT
Sbjct: 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAGFTLNIIDT 94
Query: 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKI 136
PGL + ++ + I+K L K + V R ++ + FGK I
Sbjct: 95 PGLIEGGYIND-MALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153
Query: 137 FDYMIVVFTGGDY 149
++ IV T +
Sbjct: 154 WNKAIVALTHAQF 166
>sp|Q48BF3|MNME_PSE14 tRNA modification GTPase MnmE OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=mnmE PE=3 SV=1
Length = 456
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
TVV+ GR GKS+ N++ GR+A A T ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREA--AIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLR 275
Query: 81 DSSAGSEFVG-KEIVKCIGLA 100
D+ E +G + +K IG A
Sbjct: 276 DTQDQVEMIGVQRALKAIGEA 296
>sp|Q87TS2|MNME_PSESM tRNA modification GTPase MnmE OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=mnmE PE=3 SV=1
Length = 456
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
TVV+ GR GKS+ N++ GR+A A T ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREA--AIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLR 275
Query: 81 DSSAGSEFVG-KEIVKCIGLA 100
D+ E +G + +K IG A
Sbjct: 276 DTQDQVEMIGVQRALKAIGEA 296
>sp|Q4ZL12|MNME_PSEU2 tRNA modification GTPase MnmE OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=mnmE PE=3 SV=1
Length = 456
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
TVV+ GR GKS+ N++ GR+A A T ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREA--AIVTEIAGTTRDVLREHIHIDGMPLHVVDTAGLR 275
Query: 81 DSSAGSEFVG-KEIVKCIGLA 100
D+ E +G + +K IG A
Sbjct: 276 DTQDQVEMIGVQRALKAIGEA 296
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis
thaliana GN=TOC132 PE=1 SV=1
Length = 1206
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
T+++LG++G GKSAT NSI F A G +++ V G V VIDTPGL
Sbjct: 576 TIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQDVEGLV--QGIKVRVIDTPGLL 633
Query: 81 DS 82
S
Sbjct: 634 PS 635
>sp|A4VS81|MNME_PSEU5 tRNA modification GTPase MnmE OS=Pseudomonas stutzeri (strain
A1501) GN=mnmE PE=3 SV=1
Length = 455
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
TVV+ GR GKS+ N++ GR+A A T ++ +L DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNALAGREA--AIVTDIAGTTRDVLREHILIDGMPLHVVDTAGLR 275
Query: 81 DSSAGSEFVG-KEIVKCIGLA 100
D+ E +G + + IG A
Sbjct: 276 DTEDQVERIGVQRALSAIGEA 296
>sp|A8EXI4|ERA_RICCK GTPase Era OS=Rickettsia canadensis (strain McKiel) GN=era PE=3
SV=1
Length = 295
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV--LKDGQVVNVIDTPG 78
+V ++GR +GKS N I+G K S + V T + T + LKD QV+ + DTPG
Sbjct: 10 SVCIIGRPNSGKSTLLNRIIGE---KLSIVTPKVQTTRSIITGIITLKDTQVI-LYDTPG 65
Query: 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTL 131
+F+ E K +V+C + V+++ + F + +L +L
Sbjct: 66 IFEPKGTLE---KAMVRCAWSSLHSADLVMLIIDSLKPFDDVTHNILDKLCSL 115
>sp|B1JFV3|MNME_PSEPW tRNA modification GTPase MnmE OS=Pseudomonas putida (strain W619)
GN=mnmE PE=3 SV=1
Length = 456
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80
TVV+ GR GKS+ N + GR+A +A +G T ++ + DG ++V+DT GL
Sbjct: 218 TVVIAGRPNAGKSSLLNQLAGREAAIVTA-IAGTTRDI-LREHIHIDGMPLHVVDTAGLR 275
Query: 81 DSSAGSEFVGKE-IVKCIGLA 100
D+ E +G E +K IG A
Sbjct: 276 DTDDHVEKIGVERALKAIGEA 296
>sp|Q71ZZ0|RSGA2_LISMF Putative ribosome biogenesis GTPase RsgA 2 OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=rsgA2 PE=3
SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 2 GERVIDGDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA----GSSGVTIT 57
G ++ D KP S T+VLLG +G GKS+ NS+ G K + S G T
Sbjct: 172 GFEALERDLKPNS------TLVLLGSSGVGKSSFINSLAGTDLMKTAGIREDDSKGKHTT 225
Query: 58 CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92
+ +L +G + VIDTPG+ + G G E
Sbjct: 226 THREMHLLTNGWI--VIDTPGMREFGVGFNQAGLE 258
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis
thaliana GN=TOC159 PE=1 SV=1
Length = 1503
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL- 79
+++LG+ G GKSAT NSILG + AS + G++ T + + +G + IDTPGL
Sbjct: 857 NILVLGKAGVGKSATINSILGNQI--ASIDAFGLSTTSVREISGTVNGVKITFIDTPGLK 914
Query: 80 ---FDSSAGSEF---VGKEIVKC 96
D S ++ V K + KC
Sbjct: 915 SAAMDQSTNAKMLSSVKKVMKKC 937
>sp|B8HQE1|DER_CYAP4 GTPase Der OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=der
PE=3 SV=1
Length = 453
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 12 PTSPSIGERTVV---LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG 68
PT GE ++ ++GR GKS+ N+++G + S S T + T V +DG
Sbjct: 167 PTDQQAGEEDIINVAIVGRPNVGKSSLLNAVVGEQRAIVSPISG--TTRDAIDTLVERDG 224
Query: 69 QVVNVIDTPGLF---DSSAGSEFVG-KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAA 124
Q +IDT G+ + G EF G K I A+ VL+V A + +++++
Sbjct: 225 QRYRLIDTAGIRKQKNVDYGPEFFGINRAFKAIQRAE----VVLLVLDALDGVTEQDQK- 279
Query: 125 VHRLPTLFGKKIFD---YMIVVFTGGDYLEDNEKTLEDYLGHECPKPL 169
+I D ++V D +E + T+ DY H+ + L
Sbjct: 280 -------LAGRIVDEGCACVIVVNKWDAVEKDSYTIYDY-QHQVEQRL 319
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,084,825
Number of Sequences: 539616
Number of extensions: 2790632
Number of successful extensions: 12255
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 631
Number of HSP's that attempted gapping in prelim test: 11851
Number of HSP's gapped (non-prelim): 858
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)