Query 046239
Match_columns 170
No_of_seqs 132 out of 1225
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046239.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046239hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 5.4E-27 1.2E-31 164.0 15.4 141 20-164 1-141 (196)
2 PF04548 AIG1: AIG1 family; I 100.0 9.1E-28 2E-32 169.6 11.3 141 20-164 1-141 (212)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 7.9E-23 1.7E-27 149.2 14.7 145 16-167 35-182 (313)
4 TIGR00993 3a0901s04IAP86 chlor 99.9 5.3E-21 1.1E-25 150.2 15.8 147 18-168 117-271 (763)
5 cd01853 Toc34_like Toc34-like 99.9 1.3E-20 2.8E-25 135.6 16.0 137 15-154 27-166 (249)
6 COG1159 Era GTPase [General fu 99.9 1.3E-20 2.8E-25 135.3 15.0 125 19-153 6-130 (298)
7 COG1160 Predicted GTPases [Gen 99.8 4.2E-20 9.2E-25 139.3 14.2 124 20-152 4-127 (444)
8 COG0218 Predicted GTPase [Gene 99.8 5.2E-19 1.1E-23 120.7 16.1 129 15-153 20-151 (200)
9 PF01926 MMR_HSR1: 50S ribosom 99.8 3E-19 6.4E-24 114.8 12.6 116 21-146 1-116 (116)
10 PF02421 FeoB_N: Ferrous iron 99.8 1.4E-18 3.1E-23 116.0 11.5 119 21-154 2-122 (156)
11 TIGR00436 era GTP-binding prot 99.8 4.7E-18 1E-22 124.3 15.2 121 21-152 2-122 (270)
12 PRK00089 era GTPase Era; Revie 99.8 1E-17 2.2E-22 123.9 15.5 124 19-152 5-128 (292)
13 TIGR03598 GTPase_YsxC ribosome 99.8 3.9E-17 8.5E-22 112.6 16.6 128 15-152 14-144 (179)
14 cd01894 EngA1 EngA1 subfamily. 99.8 1.6E-17 3.4E-22 111.7 12.5 120 23-152 1-120 (157)
15 PRK12298 obgE GTPase CgtA; Rev 99.8 4.7E-17 1E-21 124.0 16.3 126 21-152 161-290 (390)
16 cd04164 trmE TrmE (MnmE, ThdF, 99.8 6.2E-17 1.3E-21 108.7 14.7 122 19-152 1-122 (157)
17 PRK15494 era GTPase Era; Provi 99.8 6.5E-17 1.4E-21 121.6 16.0 124 19-152 52-175 (339)
18 COG1160 Predicted GTPases [Gen 99.8 6.3E-18 1.4E-22 127.7 10.4 134 18-160 177-312 (444)
19 cd01895 EngA2 EngA2 subfamily. 99.8 8.7E-17 1.9E-21 109.6 15.2 127 19-152 2-128 (174)
20 cd01898 Obg Obg subfamily. Th 99.8 4.3E-17 9.3E-22 111.2 13.5 125 21-152 2-129 (170)
21 TIGR03594 GTPase_EngA ribosome 99.8 4.6E-17 1E-21 126.3 15.1 122 21-152 1-122 (429)
22 cd04163 Era Era subfamily. Er 99.8 9.8E-17 2.1E-21 108.5 14.5 123 19-151 3-125 (168)
23 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.1E-16 2.4E-21 108.9 14.5 116 20-153 1-118 (168)
24 PRK12299 obgE GTPase CgtA; Rev 99.7 3.6E-16 7.7E-21 117.1 16.9 126 21-152 160-286 (335)
25 cd01897 NOG NOG1 is a nucleola 99.7 1.6E-16 3.5E-21 108.1 13.9 124 20-152 1-128 (168)
26 PRK03003 GTP-binding protein D 99.7 1.7E-16 3.8E-21 124.2 15.9 125 18-152 37-161 (472)
27 PRK00093 GTP-binding protein D 99.7 2.9E-16 6.2E-21 122.1 17.0 129 17-152 171-299 (435)
28 TIGR03594 GTPase_EngA ribosome 99.7 3.5E-16 7.6E-21 121.4 17.3 126 18-150 171-296 (429)
29 cd04171 SelB SelB subfamily. 99.7 2.1E-16 4.5E-21 107.0 14.0 117 21-152 2-119 (164)
30 PRK00093 GTP-binding protein D 99.7 1.6E-16 3.5E-21 123.5 15.2 122 20-151 2-123 (435)
31 cd01884 EF_Tu EF-Tu subfamily. 99.7 6.1E-17 1.3E-21 112.9 10.6 118 19-152 2-133 (195)
32 PRK12297 obgE GTPase CgtA; Rev 99.7 8.4E-16 1.8E-20 117.9 17.6 125 21-151 160-288 (424)
33 PF00009 GTP_EFTU: Elongation 99.7 2.8E-17 6.2E-22 114.2 8.8 118 18-152 2-137 (188)
34 cd01850 CDC_Septin CDC/Septin. 99.7 4.5E-16 9.7E-21 113.9 14.7 127 19-152 4-158 (276)
35 cd04104 p47_IIGP_like p47 (47- 99.7 3.1E-16 6.7E-21 109.7 12.8 120 20-152 2-122 (197)
36 PRK00454 engB GTP-binding prot 99.7 2.4E-15 5.1E-20 104.9 17.3 128 16-152 21-150 (196)
37 cd01864 Rab19 Rab19 subfamily. 99.7 5E-16 1.1E-20 105.6 13.5 118 19-152 3-123 (165)
38 TIGR02729 Obg_CgtA Obg family 99.7 6.1E-16 1.3E-20 115.7 14.9 127 20-152 158-288 (329)
39 COG1084 Predicted GTPase [Gene 99.7 1.2E-15 2.5E-20 111.0 15.7 126 17-152 166-295 (346)
40 cd04154 Arl2 Arl2 subfamily. 99.7 6.6E-16 1.4E-20 105.9 13.8 129 14-161 9-140 (173)
41 COG0486 ThdF Predicted GTPase 99.7 3.3E-16 7.3E-21 118.7 13.3 130 13-153 211-340 (454)
42 cd01878 HflX HflX subfamily. 99.7 1.1E-15 2.5E-20 107.4 15.2 129 17-152 39-168 (204)
43 cd04160 Arfrp1 Arfrp1 subfamil 99.7 4.1E-16 9E-21 106.0 12.3 118 21-152 1-122 (167)
44 PRK12296 obgE GTPase CgtA; Rev 99.7 1.6E-15 3.5E-20 118.0 16.9 126 20-152 160-299 (500)
45 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1E-15 2.2E-20 118.6 15.8 126 16-152 200-325 (442)
46 cd04119 RJL RJL (RabJ-Like) su 99.7 7.9E-16 1.7E-20 104.5 13.6 118 21-151 2-124 (168)
47 cd00881 GTP_translation_factor 99.7 3.7E-16 8.1E-21 108.1 12.1 115 21-152 1-129 (189)
48 cd01886 EF-G Elongation factor 99.7 6.9E-16 1.5E-20 112.6 13.7 116 21-153 1-132 (270)
49 COG3596 Predicted GTPase [Gene 99.7 8E-17 1.7E-21 114.6 8.5 128 16-152 36-163 (296)
50 cd04113 Rab4 Rab4 subfamily. 99.7 7.3E-16 1.6E-20 104.3 13.0 118 20-152 1-120 (161)
51 cd01861 Rab6 Rab6 subfamily. 99.7 9.9E-16 2.1E-20 103.5 13.6 116 21-152 2-120 (161)
52 cd01866 Rab2 Rab2 subfamily. 99.7 9.3E-16 2E-20 104.6 13.3 119 20-152 5-124 (168)
53 PRK03003 GTP-binding protein D 99.7 8.3E-16 1.8E-20 120.4 14.7 126 18-152 210-337 (472)
54 cd04124 RabL2 RabL2 subfamily. 99.7 6.9E-16 1.5E-20 104.6 12.4 116 20-151 1-118 (161)
55 cd01865 Rab3 Rab3 subfamily. 99.7 1.3E-15 2.9E-20 103.5 13.6 118 20-152 2-121 (165)
56 TIGR03156 GTP_HflX GTP-binding 99.7 1.7E-15 3.6E-20 114.3 15.3 129 17-152 187-316 (351)
57 cd01891 TypA_BipA TypA (tyrosi 99.7 1.2E-15 2.6E-20 106.5 13.4 116 20-152 3-132 (194)
58 PRK09518 bifunctional cytidyla 99.7 2.6E-15 5.6E-20 122.7 17.3 126 17-152 273-398 (712)
59 cd00154 Rab Rab family. Rab G 99.7 1.3E-15 2.8E-20 102.2 13.0 117 20-150 1-118 (159)
60 cd01860 Rab5_related Rab5-rela 99.7 1.6E-15 3.4E-20 102.7 13.5 119 20-152 2-121 (163)
61 cd01881 Obg_like The Obg-like 99.7 8.1E-16 1.8E-20 105.3 12.1 122 24-152 1-135 (176)
62 smart00175 RAB Rab subfamily o 99.7 1.7E-15 3.7E-20 102.5 13.2 117 20-152 1-120 (164)
63 cd01868 Rab11_like Rab11-like. 99.7 2.1E-15 4.5E-20 102.4 13.4 117 20-152 4-123 (165)
64 cd01867 Rab8_Rab10_Rab13_like 99.7 1.9E-15 4.1E-20 103.0 13.0 119 19-152 3-123 (167)
65 CHL00071 tufA elongation facto 99.7 5.9E-16 1.3E-20 119.2 11.4 122 14-152 7-143 (409)
66 cd04122 Rab14 Rab14 subfamily. 99.7 3.2E-15 7E-20 101.7 13.6 118 20-152 3-122 (166)
67 cd04115 Rab33B_Rab33A Rab33B/R 99.7 2.2E-15 4.7E-20 103.0 12.7 120 20-152 3-124 (170)
68 cd04168 TetM_like Tet(M)-like 99.7 2E-15 4.3E-20 108.3 12.9 116 21-153 1-132 (237)
69 cd04166 CysN_ATPS CysN_ATPS su 99.7 2.1E-15 4.7E-20 106.3 12.9 116 21-152 1-145 (208)
70 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 2.9E-15 6.2E-20 101.9 13.0 118 20-152 3-122 (166)
71 PRK05291 trmE tRNA modificatio 99.7 2.6E-15 5.6E-20 116.8 14.2 125 16-152 212-336 (449)
72 PF00735 Septin: Septin; Inte 99.7 1.9E-15 4.2E-20 110.6 12.7 129 19-153 4-158 (281)
73 PRK11058 GTPase HflX; Provisio 99.7 4.4E-15 9.6E-20 114.5 15.2 127 19-152 197-324 (426)
74 cd04123 Rab21 Rab21 subfamily. 99.7 4.1E-15 8.9E-20 100.4 13.4 118 20-152 1-120 (162)
75 cd04149 Arf6 Arf6 subfamily. 99.7 9.6E-15 2.1E-19 99.7 15.1 125 18-161 8-135 (168)
76 cd04161 Arl2l1_Arl13_like Arl2 99.7 7.3E-15 1.6E-19 100.2 14.5 113 21-152 1-115 (167)
77 cd00880 Era_like Era (E. coli 99.7 9.7E-15 2.1E-19 97.7 14.8 120 24-153 1-120 (163)
78 cd04155 Arl3 Arl3 subfamily. 99.7 4.3E-15 9.4E-20 101.6 13.3 119 15-152 10-130 (173)
79 PRK04213 GTP-binding protein; 99.7 1.4E-14 3.1E-19 101.5 16.1 124 17-152 7-145 (201)
80 cd01888 eIF2_gamma eIF2-gamma 99.7 2.5E-15 5.5E-20 105.6 12.3 117 21-152 2-152 (203)
81 cd04140 ARHI_like ARHI subfami 99.7 3.4E-15 7.4E-20 101.5 12.4 119 20-151 2-122 (165)
82 cd01879 FeoB Ferrous iron tran 99.7 3.5E-15 7.6E-20 100.4 12.2 116 24-152 1-116 (158)
83 cd01863 Rab18 Rab18 subfamily. 99.7 4.7E-15 1E-19 100.2 12.8 117 20-150 1-119 (161)
84 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1E-14 2.2E-19 100.1 14.5 116 18-152 14-131 (174)
85 smart00178 SAR Sar1p-like memb 99.7 6.5E-15 1.4E-19 102.0 13.7 126 17-161 15-143 (184)
86 cd04110 Rab35 Rab35 subfamily. 99.7 7.7E-15 1.7E-19 102.8 14.2 119 18-152 5-125 (199)
87 smart00177 ARF ARF-like small 99.7 1E-14 2.2E-19 100.2 14.4 116 18-152 12-129 (175)
88 cd00879 Sar1 Sar1 subfamily. 99.7 9.7E-15 2.1E-19 101.4 14.5 128 16-162 16-146 (190)
89 cd04159 Arl10_like Arl10-like 99.7 7.4E-15 1.6E-19 98.5 13.5 113 22-152 2-116 (159)
90 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 5.7E-15 1.2E-19 100.4 12.9 113 22-152 2-114 (164)
91 cd01862 Rab7 Rab7 subfamily. 99.7 8.2E-15 1.8E-19 100.0 13.7 118 20-151 1-123 (172)
92 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 8.9E-15 1.9E-19 102.7 14.2 118 20-150 1-123 (201)
93 cd01890 LepA LepA subfamily. 99.7 4.8E-15 1E-19 101.9 12.5 117 20-152 1-134 (179)
94 cd01876 YihA_EngB The YihA (En 99.6 1.6E-14 3.5E-19 97.8 15.0 122 22-152 2-125 (170)
95 PLN00223 ADP-ribosylation fact 99.6 1.3E-14 2.9E-19 100.2 14.8 118 16-152 14-133 (181)
96 PRK09518 bifunctional cytidyla 99.6 5.4E-15 1.2E-19 120.9 14.8 126 18-152 449-576 (712)
97 cd01889 SelB_euk SelB subfamil 99.6 4.9E-15 1.1E-19 103.2 12.5 116 21-152 2-135 (192)
98 cd04106 Rab23_lke Rab23-like s 99.6 1E-14 2.2E-19 98.7 13.7 116 21-152 2-121 (162)
99 cd04109 Rab28 Rab28 subfamily. 99.6 1E-14 2.3E-19 103.3 14.2 117 21-152 2-124 (215)
100 cd04125 RabA_like RabA-like su 99.6 6.8E-15 1.5E-19 102.1 13.0 118 20-152 1-120 (188)
101 cd04142 RRP22 RRP22 subfamily. 99.6 6.4E-15 1.4E-19 103.1 12.8 127 20-152 1-131 (198)
102 cd04151 Arl1 Arl1 subfamily. 99.6 6.5E-15 1.4E-19 99.4 12.4 113 21-152 1-115 (158)
103 cd04157 Arl6 Arl6 subfamily. 99.6 8.5E-15 1.8E-19 99.0 12.9 117 21-152 1-119 (162)
104 PLN03118 Rab family protein; P 99.6 1.9E-14 4.1E-19 101.7 15.1 127 12-152 7-135 (211)
105 cd04158 ARD1 ARD1 subfamily. 99.6 1.1E-14 2.4E-19 99.4 13.5 113 21-152 1-115 (169)
106 cd04127 Rab27A Rab27a subfamil 99.6 1.5E-14 3.3E-19 99.6 14.2 120 19-152 4-135 (180)
107 cd00878 Arf_Arl Arf (ADP-ribos 99.6 7.8E-15 1.7E-19 98.9 12.5 114 21-152 1-115 (158)
108 PTZ00133 ADP-ribosylation fact 99.6 2.1E-14 4.6E-19 99.2 14.8 117 17-152 15-133 (182)
109 KOG0084 GTPase Rab1/YPT1, smal 99.6 5E-15 1.1E-19 100.3 11.2 123 16-152 6-129 (205)
110 cd04169 RF3 RF3 subfamily. Pe 99.6 1.5E-14 3.3E-19 105.4 14.6 118 19-153 2-139 (267)
111 TIGR00487 IF-2 translation ini 99.6 1.8E-14 4E-19 114.8 16.2 128 16-161 84-211 (587)
112 cd04112 Rab26 Rab26 subfamily. 99.6 1E-14 2.2E-19 101.5 13.2 117 21-152 2-121 (191)
113 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.1E-14 2.4E-19 98.3 13.0 114 21-152 1-116 (160)
114 cd04150 Arf1_5_like Arf1-Arf5- 99.6 1.8E-14 3.8E-19 97.5 14.0 113 21-152 2-116 (159)
115 cd04114 Rab30 Rab30 subfamily. 99.6 9.9E-15 2.2E-19 99.4 12.7 119 18-152 6-127 (169)
116 cd01896 DRG The developmentall 99.6 2.4E-14 5.2E-19 102.6 15.2 88 21-115 2-89 (233)
117 cd04105 SR_beta Signal recogni 99.6 1.2E-14 2.7E-19 102.1 13.4 126 20-162 1-135 (203)
118 cd04101 RabL4 RabL4 (Rab-like4 99.6 1E-14 2.3E-19 98.8 12.6 118 21-152 2-122 (164)
119 cd04120 Rab12 Rab12 subfamily. 99.6 9.5E-15 2.1E-19 102.4 12.7 116 21-152 2-120 (202)
120 cd04136 Rap_like Rap-like subf 99.6 9.6E-15 2.1E-19 98.8 12.4 117 20-152 2-121 (163)
121 smart00053 DYNc Dynamin, GTPas 99.6 4.4E-14 9.5E-19 101.0 16.2 141 18-164 25-218 (240)
122 PLN03110 Rab GTPase; Provision 99.6 2.4E-14 5.2E-19 101.5 14.8 120 18-152 11-132 (216)
123 cd01893 Miro1 Miro1 subfamily. 99.6 8.7E-15 1.9E-19 99.6 12.1 114 21-152 2-118 (166)
124 cd04170 EF-G_bact Elongation f 99.6 8.7E-15 1.9E-19 107.0 12.9 115 21-152 1-131 (268)
125 PRK12736 elongation factor Tu; 99.6 2.9E-15 6.4E-20 114.9 10.6 121 16-152 9-143 (394)
126 PF08477 Miro: Miro-like prote 99.6 6.8E-16 1.5E-20 99.4 6.1 116 21-148 1-119 (119)
127 cd00877 Ran Ran (Ras-related n 99.6 6.8E-15 1.5E-19 100.2 11.1 114 21-152 2-119 (166)
128 cd04145 M_R_Ras_like M-Ras/R-R 99.6 1.9E-14 4.1E-19 97.5 13.2 118 19-152 2-122 (164)
129 PLN03071 GTP-binding nuclear p 99.6 1.6E-14 3.6E-19 102.6 13.4 119 17-151 11-131 (219)
130 cd04138 H_N_K_Ras_like H-Ras/N 99.6 1.5E-14 3.3E-19 97.6 12.5 117 20-152 2-121 (162)
131 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 2E-14 4.3E-19 99.4 13.0 119 19-152 3-124 (183)
132 PRK12735 elongation factor Tu; 99.6 6.2E-15 1.3E-19 113.2 11.5 121 15-152 8-143 (396)
133 PLN03127 Elongation factor Tu; 99.6 1.3E-14 2.9E-19 112.5 13.3 122 14-152 56-192 (447)
134 PRK05306 infB translation init 99.6 2.5E-14 5.5E-19 116.8 15.5 118 16-152 287-404 (787)
135 COG5019 CDC3 Septin family pro 99.6 2.5E-14 5.5E-19 105.6 13.8 131 17-153 21-178 (373)
136 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 1.8E-14 3.9E-19 98.5 12.1 118 21-152 2-121 (170)
137 cd04117 Rab15 Rab15 subfamily. 99.6 2.6E-14 5.7E-19 96.8 12.9 116 21-152 2-120 (161)
138 cd04132 Rho4_like Rho4-like su 99.6 2.2E-14 4.8E-19 99.4 12.7 114 21-152 2-120 (187)
139 PRK12317 elongation factor 1-a 99.6 1.9E-14 4.1E-19 111.6 13.6 122 15-152 2-154 (425)
140 PRK09554 feoB ferrous iron tra 99.6 2.7E-14 5.8E-19 117.0 15.0 124 19-152 3-127 (772)
141 cd04116 Rab9 Rab9 subfamily. 99.6 2.6E-14 5.7E-19 97.5 12.7 133 18-163 4-142 (170)
142 cd00157 Rho Rho (Ras homology) 99.6 1.2E-14 2.5E-19 99.2 10.9 117 20-153 1-120 (171)
143 smart00173 RAS Ras subfamily o 99.6 1.7E-14 3.6E-19 97.8 11.6 117 21-152 2-120 (164)
144 cd04118 Rab24 Rab24 subfamily. 99.6 2.2E-14 4.7E-19 100.0 12.4 114 20-151 1-119 (193)
145 cd00876 Ras Ras family. The R 99.6 3.1E-14 6.7E-19 95.8 12.3 116 21-152 1-119 (160)
146 COG2262 HflX GTPases [General 99.6 3.2E-14 7E-19 106.4 13.3 137 10-153 183-320 (411)
147 PLN03108 Rab family protein; P 99.6 6.1E-14 1.3E-18 99.1 14.0 119 19-152 6-126 (210)
148 TIGR00475 selB selenocysteine- 99.6 4.4E-14 9.5E-19 113.0 14.7 116 21-152 2-118 (581)
149 KOG1489 Predicted GTP-binding 99.6 2.7E-14 5.8E-19 103.5 12.1 136 21-162 198-337 (366)
150 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 5.8E-14 1.3E-18 96.2 13.3 117 20-152 3-122 (172)
151 PRK15467 ethanolamine utilizat 99.6 1.4E-14 3E-19 98.0 9.9 115 21-163 3-117 (158)
152 CHL00189 infB translation init 99.6 4.3E-14 9.3E-19 114.6 14.1 120 16-153 241-363 (742)
153 cd04121 Rab40 Rab40 subfamily. 99.6 5.7E-14 1.2E-18 97.6 12.8 117 18-151 5-124 (189)
154 cd04175 Rap1 Rap1 subgroup. T 99.6 3.5E-14 7.7E-19 96.3 11.6 118 20-152 2-121 (164)
155 cd04111 Rab39 Rab39 subfamily. 99.6 6.9E-14 1.5E-18 98.9 13.3 120 19-152 2-124 (211)
156 PRK00049 elongation factor Tu; 99.6 1.7E-14 3.6E-19 110.8 10.9 120 16-152 9-143 (396)
157 PLN03126 Elongation factor Tu; 99.6 1.2E-14 2.6E-19 113.5 10.2 123 14-152 76-212 (478)
158 TIGR00485 EF-Tu translation el 99.6 1.7E-14 3.6E-19 110.8 10.8 121 16-152 9-143 (394)
159 cd04126 Rab20 Rab20 subfamily. 99.6 5.4E-14 1.2E-18 99.8 12.5 113 20-151 1-114 (220)
160 KOG1547 Septin CDC10 and relat 99.6 2.4E-14 5.1E-19 100.2 10.4 133 14-152 41-199 (336)
161 PTZ00369 Ras-like protein; Pro 99.6 5.2E-14 1.1E-18 97.8 12.3 120 18-152 4-125 (189)
162 cd04131 Rnd Rnd subfamily. Th 99.6 4.7E-14 1E-18 97.2 11.9 115 20-151 2-119 (178)
163 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 7.4E-14 1.6E-18 99.7 13.2 117 18-151 12-131 (232)
164 COG2229 Predicted GTPase [Gene 99.6 1.9E-13 4E-18 91.9 14.2 132 18-164 9-149 (187)
165 KOG2655 Septin family protein 99.6 5.9E-14 1.3E-18 104.3 13.0 131 17-153 19-174 (366)
166 cd04102 RabL3 RabL3 (Rab-like3 99.6 9.4E-14 2E-18 97.3 13.4 119 21-152 2-144 (202)
167 PRK10512 selenocysteinyl-tRNA- 99.6 9.9E-14 2.1E-18 111.4 15.2 117 21-152 2-119 (614)
168 PF00025 Arf: ADP-ribosylation 99.6 4.9E-14 1.1E-18 96.8 11.7 127 16-161 11-140 (175)
169 cd04176 Rap2 Rap2 subgroup. T 99.6 3.8E-14 8.3E-19 96.0 11.0 117 20-152 2-121 (163)
170 cd04139 RalA_RalB RalA/RalB su 99.6 9E-14 1.9E-18 94.0 12.7 118 20-151 1-119 (164)
171 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 7.1E-14 1.5E-18 96.6 12.2 117 18-151 4-123 (182)
172 cd04144 Ras2 Ras2 subfamily. 99.6 6.6E-14 1.4E-18 97.4 12.2 117 21-152 1-121 (190)
173 TIGR02528 EutP ethanolamine ut 99.6 1.8E-14 4E-19 95.5 8.9 101 21-151 2-102 (142)
174 smart00174 RHO Rho (Ras homolo 99.6 4E-14 8.6E-19 96.9 10.8 113 22-152 1-117 (174)
175 cd04134 Rho3 Rho3 subfamily. 99.6 4.1E-14 8.9E-19 98.4 10.9 116 20-152 1-119 (189)
176 COG0536 Obg Predicted GTPase [ 99.6 1.2E-13 2.7E-18 101.1 13.6 125 22-152 162-290 (369)
177 cd04146 RERG_RasL11_like RERG/ 99.6 2.6E-14 5.7E-19 97.1 9.3 118 21-152 1-121 (165)
178 cd01885 EF2 EF2 (for archaea a 99.6 4.1E-14 9E-19 100.4 10.6 115 20-150 1-138 (222)
179 cd04135 Tc10 TC10 subfamily. 99.6 1.7E-13 3.6E-18 93.8 13.3 115 20-152 1-119 (174)
180 cd04177 RSR1 RSR1 subgroup. R 99.6 1.1E-13 2.5E-18 94.3 12.4 118 20-152 2-121 (168)
181 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1.1E-13 2.4E-18 95.6 12.4 114 21-151 2-118 (182)
182 PRK05124 cysN sulfate adenylyl 99.6 4.8E-14 1E-18 110.3 11.6 127 11-153 19-176 (474)
183 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.3E-13 2.9E-18 94.7 12.6 114 20-152 2-120 (175)
184 cd01892 Miro2 Miro2 subfamily. 99.6 1.3E-13 2.8E-18 94.2 12.4 118 18-152 3-123 (169)
185 TIGR00484 EF-G translation elo 99.6 1.4E-13 3.1E-18 112.3 14.8 121 16-153 7-143 (689)
186 PRK00007 elongation factor G; 99.6 1E-13 2.2E-18 113.2 13.8 121 16-153 7-143 (693)
187 TIGR00231 small_GTP small GTP- 99.6 2.8E-13 6E-18 90.5 13.8 117 20-152 2-123 (161)
188 TIGR01394 TypA_BipA GTP-bindin 99.6 1.6E-13 3.4E-18 109.8 14.4 116 20-152 2-131 (594)
189 PRK12739 elongation factor G; 99.6 1E-13 2.2E-18 113.2 13.4 120 16-152 5-140 (691)
190 PF05049 IIGP: Interferon-indu 99.6 1.9E-14 4E-19 108.2 8.4 119 18-149 34-153 (376)
191 KOG1423 Ras-like GTPase ERA [C 99.6 1.2E-13 2.6E-18 99.7 12.1 131 16-152 69-200 (379)
192 cd01875 RhoG RhoG subfamily. 99.6 1.3E-13 2.8E-18 96.0 12.0 117 19-152 3-122 (191)
193 cd01871 Rac1_like Rac1-like su 99.5 2.1E-13 4.5E-18 93.6 12.5 115 20-151 2-119 (174)
194 cd01883 EF1_alpha Eukaryotic e 99.5 1.4E-13 3E-18 97.9 12.0 115 21-151 1-151 (219)
195 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 2E-13 4.3E-18 97.0 12.7 116 20-152 2-120 (222)
196 cd04148 RGK RGK subfamily. Th 99.5 1.5E-13 3.3E-18 97.7 12.2 118 20-152 1-121 (221)
197 PLN00023 GTP-binding protein; 99.5 3.7E-13 8E-18 99.4 14.5 127 13-152 15-166 (334)
198 KOG1191 Mitochondrial GTPase [ 99.5 5E-14 1.1E-18 107.2 10.0 136 13-152 262-404 (531)
199 KOG0073 GTP-binding ADP-ribosy 99.5 2.1E-13 4.5E-18 89.8 11.5 116 17-151 14-131 (185)
200 cd04147 Ras_dva Ras-dva subfam 99.5 1.3E-13 2.9E-18 96.5 11.5 115 21-151 1-118 (198)
201 cd01870 RhoA_like RhoA-like su 99.5 2.9E-13 6.4E-18 92.7 13.0 116 20-152 2-120 (175)
202 PRK10218 GTP-binding protein; 99.5 3.2E-13 6.9E-18 108.1 14.7 118 19-153 5-136 (607)
203 TIGR02034 CysN sulfate adenyly 99.5 1.4E-13 3E-18 106.1 12.2 118 20-153 1-149 (406)
204 PF00350 Dynamin_N: Dynamin fa 99.5 6.4E-14 1.4E-18 95.5 9.2 69 68-147 100-168 (168)
205 PF09439 SRPRB: Signal recogni 99.5 3.9E-15 8.5E-20 101.6 3.1 131 19-162 3-138 (181)
206 cd04137 RheB Rheb (Ras Homolog 99.5 1.8E-13 3.8E-18 94.3 11.4 118 20-152 2-121 (180)
207 TIGR00503 prfC peptide chain r 99.5 3.4E-13 7.3E-18 106.6 14.3 121 16-153 8-148 (527)
208 cd04167 Snu114p Snu114p subfam 99.5 1.3E-13 2.8E-18 97.6 10.8 115 20-150 1-136 (213)
209 TIGR00491 aIF-2 translation in 99.5 2.7E-13 6E-18 108.1 13.5 116 18-151 3-135 (590)
210 cd04143 Rhes_like Rhes_like su 99.5 3.4E-13 7.4E-18 97.4 12.8 116 21-151 2-127 (247)
211 PTZ00141 elongation factor 1- 99.5 2.7E-13 5.9E-18 105.4 13.1 118 16-149 4-157 (446)
212 cd04165 GTPBP1_like GTPBP1-lik 99.5 5.2E-13 1.1E-17 95.0 13.6 117 21-152 1-153 (224)
213 COG0370 FeoB Fe2+ transport sy 99.5 3E-13 6.6E-18 106.9 13.4 119 19-152 3-123 (653)
214 cd04130 Wrch_1 Wrch-1 subfamil 99.5 2.6E-13 5.7E-18 92.9 11.4 115 21-152 2-119 (173)
215 cd04133 Rop_like Rop subfamily 99.5 2.4E-13 5.3E-18 93.4 11.1 116 20-152 2-120 (176)
216 PRK05506 bifunctional sulfate 99.5 2.2E-13 4.8E-18 110.3 12.6 122 15-152 20-172 (632)
217 PF10662 PduV-EutP: Ethanolami 99.5 7.6E-14 1.7E-18 91.5 8.1 114 20-163 2-117 (143)
218 TIGR00483 EF-1_alpha translati 99.5 3.6E-13 7.9E-18 104.5 13.3 121 16-152 4-156 (426)
219 cd00882 Ras_like_GTPase Ras-li 99.5 1.8E-13 3.9E-18 90.6 10.1 115 24-153 1-118 (157)
220 PF00071 Ras: Ras family; Int 99.5 1E-13 2.2E-18 93.8 8.8 116 21-151 1-118 (162)
221 PRK00741 prfC peptide chain re 99.5 5.2E-13 1.1E-17 105.5 13.9 120 17-153 8-147 (526)
222 PRK13351 elongation factor G; 99.5 4.3E-13 9.2E-18 109.6 13.4 119 17-152 6-140 (687)
223 PRK04004 translation initiatio 99.5 5E-13 1.1E-17 106.8 13.1 116 17-150 4-136 (586)
224 PRK09866 hypothetical protein; 99.5 8.3E-13 1.8E-17 104.4 14.1 85 69-162 230-317 (741)
225 PTZ00132 GTP-binding nuclear p 99.5 1E-12 2.2E-17 93.1 13.3 121 15-151 5-127 (215)
226 smart00176 RAN Ran (Ras-relate 99.5 4.7E-13 1E-17 93.7 11.1 111 25-151 1-113 (200)
227 KOG0092 GTPase Rab5/YPT51 and 99.5 3.6E-13 7.8E-18 91.0 9.5 123 18-154 4-127 (200)
228 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.5 1.1E-12 2.5E-17 88.9 11.8 121 17-153 20-144 (221)
229 cd01882 BMS1 Bms1. Bms1 is an 99.5 2E-12 4.3E-17 92.3 13.7 114 14-152 34-148 (225)
230 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 4.9E-13 1.1E-17 95.1 10.2 125 21-152 1-126 (232)
231 KOG0078 GTP-binding protein SE 99.5 9.8E-13 2.1E-17 90.3 11.2 123 15-152 8-132 (207)
232 TIGR03680 eif2g_arch translati 99.5 6.7E-13 1.5E-17 102.3 11.5 121 17-152 2-149 (406)
233 TIGR01393 lepA GTP-binding pro 99.5 1.5E-12 3.2E-17 104.4 13.8 118 19-152 3-137 (595)
234 KOG0098 GTPase Rab2, small G p 99.5 3.2E-12 7E-17 86.1 12.3 121 18-152 5-126 (216)
235 cd04129 Rho2 Rho2 subfamily. 99.5 1.5E-12 3.2E-17 90.4 11.3 114 20-151 2-119 (187)
236 KOG0095 GTPase Rab30, small G 99.5 2.3E-12 5E-17 83.8 11.2 121 19-153 7-128 (213)
237 PRK04000 translation initiatio 99.5 1.8E-12 3.8E-17 100.0 12.4 122 16-152 6-154 (411)
238 KOG0080 GTPase Rab18, small G 99.4 1.1E-12 2.3E-17 86.3 9.3 122 16-150 8-130 (209)
239 KOG1490 GTP-binding protein CR 99.4 5.7E-13 1.2E-17 101.8 8.5 131 14-153 163-297 (620)
240 PRK05433 GTP-binding protein L 99.4 3.7E-12 8E-17 102.2 13.6 120 17-152 5-141 (600)
241 KOG0087 GTPase Rab11/YPT3, sma 99.4 1.8E-12 4E-17 88.9 9.9 123 15-151 10-133 (222)
242 PTZ00416 elongation factor 2; 99.4 1.8E-12 3.9E-17 107.6 11.8 119 16-150 16-157 (836)
243 COG1100 GTPase SAR1 and relate 99.4 5.1E-12 1.1E-16 89.6 12.5 120 20-153 6-127 (219)
244 COG1163 DRG Predicted GTPase [ 99.4 1.9E-12 4.1E-17 94.3 9.8 89 18-114 62-151 (365)
245 cd04103 Centaurin_gamma Centau 99.4 6.5E-12 1.4E-16 84.9 11.4 108 21-150 2-112 (158)
246 TIGR00437 feoB ferrous iron tr 99.4 7.3E-12 1.6E-16 100.5 13.3 114 26-152 1-114 (591)
247 COG5256 TEF1 Translation elong 99.4 1.3E-11 2.8E-16 92.7 12.9 133 15-163 3-171 (428)
248 PLN00043 elongation factor 1-a 99.4 1.4E-11 2.9E-16 96.0 12.6 120 15-150 3-158 (447)
249 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.4E-17 107.4 6.8 120 15-151 15-152 (720)
250 PLN00116 translation elongatio 99.4 4E-12 8.6E-17 105.7 9.1 120 15-150 15-163 (843)
251 KOG0090 Signal recognition par 99.3 4.2E-12 9.1E-17 87.4 7.0 131 20-168 39-173 (238)
252 KOG0079 GTP-binding protein H- 99.3 1.8E-11 3.9E-16 79.6 8.8 117 20-152 9-127 (198)
253 cd01900 YchF YchF subfamily. 99.3 1.8E-11 4E-16 89.2 9.7 86 22-113 1-102 (274)
254 PTZ00258 GTP-binding protein; 99.3 3E-11 6.5E-16 91.9 11.2 93 16-114 18-126 (390)
255 cd01873 RhoBTB RhoBTB subfamil 99.3 7E-11 1.5E-15 82.5 11.9 116 20-151 3-134 (195)
256 PRK12740 elongation factor G; 99.3 6.2E-11 1.3E-15 96.8 13.1 112 25-153 1-128 (668)
257 PTZ00327 eukaryotic translatio 99.3 4.1E-11 8.8E-16 93.3 11.2 123 15-152 30-186 (460)
258 COG1116 TauB ABC-type nitrate/ 99.3 8.6E-11 1.9E-15 83.3 11.6 34 15-48 25-58 (248)
259 PRK07560 elongation factor EF- 99.3 6.9E-12 1.5E-16 103.1 6.5 122 13-150 14-152 (731)
260 PRK09601 GTP-binding protein Y 99.3 6.7E-11 1.5E-15 89.1 11.0 89 20-114 3-107 (364)
261 KOG0086 GTPase Rab4, small G p 99.3 1.1E-10 2.4E-15 76.3 10.4 121 19-153 9-130 (214)
262 KOG0071 GTP-binding ADP-ribosy 99.2 4.5E-10 9.7E-15 72.5 12.3 128 17-163 15-145 (180)
263 COG0532 InfB Translation initi 99.2 4.7E-10 1E-14 86.8 14.6 120 17-154 3-124 (509)
264 KOG1954 Endocytosis/signaling 99.2 1.1E-10 2.4E-15 86.7 10.6 134 14-152 53-226 (532)
265 KOG0394 Ras-related GTPase [Ge 99.2 4.4E-11 9.6E-16 80.5 7.6 123 18-152 8-133 (210)
266 KOG1145 Mitochondrial translat 99.2 4.2E-10 9.1E-15 87.3 13.9 121 16-154 150-270 (683)
267 COG0480 FusA Translation elong 99.2 2.4E-10 5.3E-15 92.5 13.2 121 16-153 7-144 (697)
268 cd03229 ABC_Class3 This class 99.2 5.6E-11 1.2E-15 81.9 8.3 130 15-148 22-161 (178)
269 TIGR02836 spore_IV_A stage IV 99.2 3.9E-10 8.5E-15 85.5 12.9 129 17-150 15-193 (492)
270 COG5192 BMS1 GTP-binding prote 99.2 1.7E-10 3.8E-15 89.9 11.3 118 11-153 61-179 (1077)
271 cd01858 NGP_1 NGP-1. Autoanti 99.2 7.5E-11 1.6E-15 79.6 7.5 57 18-79 101-157 (157)
272 TIGR03348 VI_IcmF type VI secr 99.2 2.2E-10 4.7E-15 98.4 11.7 132 20-163 112-265 (1169)
273 KOG0093 GTPase Rab3, small G p 99.2 4.4E-10 9.5E-15 73.1 10.1 119 19-152 21-141 (193)
274 KOG0075 GTP-binding ADP-ribosy 99.2 6.9E-11 1.5E-15 76.8 6.1 120 16-153 17-138 (186)
275 COG2895 CysN GTPases - Sulfate 99.2 4.7E-10 1E-14 82.9 10.7 131 16-162 3-164 (431)
276 cd03230 ABC_DR_subfamily_A Thi 99.2 3.6E-10 7.9E-15 77.5 9.1 128 15-148 22-155 (173)
277 PF03193 DUF258: Protein of un 99.1 4E-11 8.6E-16 80.5 4.0 63 19-85 35-103 (161)
278 COG1126 GlnQ ABC-type polar am 99.1 2E-10 4.2E-15 79.8 7.5 133 14-150 23-198 (240)
279 PRK09602 translation-associate 99.1 1.5E-09 3.2E-14 83.4 13.1 89 20-114 2-113 (396)
280 cd03228 ABCC_MRP_Like The MRP 99.1 1.1E-10 2.3E-15 80.0 6.2 128 15-148 24-155 (171)
281 KOG0395 Ras-related GTPase [Ge 99.1 5.8E-10 1.3E-14 77.8 9.8 120 19-152 3-123 (196)
282 KOG0070 GTP-binding ADP-ribosy 99.1 2.1E-10 4.6E-15 77.3 7.1 120 14-152 12-133 (181)
283 COG1131 CcmA ABC-type multidru 99.1 2.1E-10 4.6E-15 84.8 7.8 127 15-147 27-196 (293)
284 cd01851 GBP Guanylate-binding 99.1 1.8E-09 4E-14 76.9 12.2 108 17-129 5-115 (224)
285 KOG0074 GTP-binding ADP-ribosy 99.1 5.2E-10 1.1E-14 72.3 8.3 128 14-161 12-141 (185)
286 COG3839 MalK ABC-type sugar tr 99.1 5E-10 1.1E-14 83.5 9.4 37 15-51 25-61 (338)
287 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 1.9E-09 4E-14 77.3 11.7 34 15-48 26-59 (254)
288 TIGR02868 CydC thiol reductant 99.1 1.1E-10 2.4E-15 93.1 6.1 35 16-50 358-392 (529)
289 COG1136 SalX ABC-type antimicr 99.1 3.3E-10 7.2E-15 79.9 7.7 39 11-49 23-61 (226)
290 COG4108 PrfC Peptide chain rel 99.1 9.7E-10 2.1E-14 83.3 10.6 121 17-154 10-150 (528)
291 KOG2486 Predicted GTPase [Gene 99.1 1.2E-09 2.6E-14 78.4 10.4 127 16-152 133-263 (320)
292 cd04178 Nucleostemin_like Nucl 99.1 3E-10 6.4E-15 77.7 7.1 58 17-79 115-172 (172)
293 KOG0462 Elongation factor-type 99.1 1.4E-09 3.1E-14 84.3 11.5 130 16-162 57-202 (650)
294 cd01899 Ygr210 Ygr210 subfamil 99.1 1.1E-09 2.5E-14 81.6 10.8 87 22-114 1-110 (318)
295 COG4988 CydD ABC-type transpor 99.1 2.7E-10 5.8E-15 89.1 7.4 38 13-50 341-378 (559)
296 cd03246 ABCC_Protease_Secretio 99.1 7.5E-10 1.6E-14 75.9 8.7 129 15-148 24-156 (173)
297 cd03216 ABC_Carb_Monos_I This 99.1 1.2E-09 2.5E-14 74.3 9.4 120 15-148 22-142 (163)
298 COG3276 SelB Selenocysteine-sp 99.1 2.4E-09 5.3E-14 81.2 11.9 123 21-161 2-125 (447)
299 cd03222 ABC_RNaseL_inhibitor T 99.1 3.1E-09 6.8E-14 73.0 11.2 111 15-148 21-132 (177)
300 cd03263 ABC_subfamily_A The AB 99.1 1.2E-09 2.5E-14 77.8 8.4 34 15-48 24-57 (220)
301 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 1.4E-09 3E-14 77.2 8.8 34 15-48 26-59 (218)
302 PRK13657 cyclic beta-1,2-gluca 99.0 3.6E-10 7.8E-15 91.2 6.2 34 16-49 358-391 (588)
303 cd03259 ABC_Carb_Solutes_like 99.0 2E-09 4.4E-14 76.2 9.3 34 15-48 22-55 (213)
304 COG1217 TypA Predicted membran 99.0 3.3E-09 7.1E-14 81.1 10.8 120 18-154 4-137 (603)
305 cd03215 ABC_Carb_Monos_II This 99.0 2E-09 4.4E-14 74.4 9.1 130 15-148 22-164 (182)
306 KOG1707 Predicted Ras related/ 99.0 2.5E-09 5.3E-14 83.5 10.3 129 16-159 6-137 (625)
307 PRK11174 cysteine/glutathione 99.0 4.2E-10 9E-15 90.9 6.4 33 16-49 373-405 (588)
308 cd03223 ABCD_peroxisomal_ALDP 99.0 4.1E-09 8.8E-14 71.8 10.4 34 15-48 23-56 (166)
309 COG1120 FepC ABC-type cobalami 99.0 9.8E-10 2.1E-14 79.0 7.5 34 15-48 24-57 (258)
310 cd03247 ABCC_cytochrome_bd The 99.0 3.4E-10 7.3E-15 78.0 5.0 126 15-147 24-156 (178)
311 KOG0458 Elongation factor 1 al 99.0 5.8E-09 1.3E-13 81.5 12.2 134 13-162 171-340 (603)
312 TIGR02857 CydD thiol reductant 99.0 5.1E-10 1.1E-14 89.3 6.7 35 15-49 344-378 (529)
313 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.2E-09 2.6E-14 72.4 7.3 57 20-81 84-140 (141)
314 cd03264 ABC_drug_resistance_li 99.0 8.8E-10 1.9E-14 77.9 7.1 31 17-48 24-54 (211)
315 PRK09563 rbgA GTPase YlqF; Rev 99.0 2.6E-09 5.6E-14 78.9 9.8 66 17-87 119-184 (287)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.0 3.4E-09 7.3E-14 70.5 9.4 105 15-148 22-127 (144)
317 COG0488 Uup ATPase components 99.0 1.8E-09 3.8E-14 85.4 9.3 35 15-49 25-59 (530)
318 COG4917 EutP Ethanolamine util 99.0 4.8E-10 1E-14 71.0 4.5 104 20-152 2-105 (148)
319 cd01855 YqeH YqeH. YqeH is an 99.0 8.5E-10 1.8E-14 76.7 6.2 57 19-79 127-190 (190)
320 cd03261 ABC_Org_Solvent_Resist 99.0 2E-09 4.3E-14 77.3 8.3 34 15-48 22-55 (235)
321 cd03293 ABC_NrtD_SsuB_transpor 99.0 1E-08 2.2E-13 72.9 11.7 34 15-48 26-59 (220)
322 PRK13768 GTPase; Provisional 99.0 2.5E-09 5.4E-14 77.6 8.7 82 69-153 97-178 (253)
323 cd03301 ABC_MalK_N The N-termi 99.0 4.3E-09 9.4E-14 74.5 9.7 33 16-48 23-55 (213)
324 PRK11176 lipid transporter ATP 99.0 4E-10 8.8E-15 90.8 5.0 34 16-49 366-399 (582)
325 cd03218 ABC_YhbG The ABC trans 99.0 4.9E-09 1.1E-13 75.1 10.0 34 15-48 22-55 (232)
326 cd01849 YlqF_related_GTPase Yl 99.0 1.4E-09 3E-14 73.2 6.8 58 17-79 98-155 (155)
327 PRK10790 putative multidrug tr 99.0 6.1E-10 1.3E-14 90.0 5.9 35 15-49 363-397 (592)
328 TIGR02203 MsbA_lipidA lipid A 99.0 4.7E-10 1E-14 90.3 5.1 35 15-49 354-388 (571)
329 COG3842 PotA ABC-type spermidi 99.0 2.2E-09 4.8E-14 80.5 8.2 39 13-51 25-63 (352)
330 TIGR01277 thiQ thiamine ABC tr 99.0 6.2E-09 1.3E-13 73.7 10.0 34 15-48 20-53 (213)
331 cd03225 ABC_cobalt_CbiO_domain 99.0 2.2E-09 4.7E-14 75.9 7.7 34 15-48 23-56 (211)
332 PRK12288 GTPase RsgA; Reviewed 99.0 1.1E-09 2.4E-14 82.6 6.4 61 20-84 206-272 (347)
333 TIGR03596 GTPase_YlqF ribosome 99.0 4.5E-09 9.8E-14 77.3 9.4 65 17-86 116-180 (276)
334 TIGR00960 3a0501s02 Type II (G 99.0 5.1E-09 1.1E-13 74.3 9.3 34 15-48 25-58 (216)
335 PRK11432 fbpC ferric transport 99.0 3.3E-09 7.1E-14 80.4 8.6 35 15-49 28-62 (351)
336 TIGR03410 urea_trans_UrtE urea 99.0 2.3E-09 5.1E-14 76.7 7.5 34 15-48 22-55 (230)
337 cd03231 ABC_CcmA_heme_exporter 99.0 1.3E-08 2.8E-13 71.5 11.1 34 15-48 22-55 (201)
338 PRK13536 nodulation factor exp 99.0 7E-09 1.5E-13 78.3 10.3 34 15-48 63-96 (340)
339 COG1162 Predicted GTPases [Gen 99.0 4E-09 8.8E-14 77.0 8.5 63 18-84 163-231 (301)
340 TIGR03597 GTPase_YqeH ribosome 99.0 5.6E-10 1.2E-14 84.9 4.3 124 19-152 154-281 (360)
341 cd03298 ABC_ThiQ_thiamine_tran 99.0 6.3E-09 1.4E-13 73.5 9.4 35 14-48 19-53 (211)
342 cd03265 ABC_DrrA DrrA is the A 99.0 3.3E-09 7.1E-14 75.5 8.0 34 15-48 22-55 (220)
343 TIGR01188 drrA daunorubicin re 99.0 3.7E-09 8.1E-14 78.7 8.5 34 15-48 15-48 (302)
344 TIGR03375 type_I_sec_LssB type 99.0 7.6E-10 1.6E-14 91.0 5.3 34 16-49 488-521 (694)
345 PRK11650 ugpC glycerol-3-phosp 99.0 3.6E-09 7.8E-14 80.3 8.5 34 15-48 26-59 (356)
346 cd03266 ABC_NatA_sodium_export 99.0 7.7E-09 1.7E-13 73.4 9.6 34 15-48 27-60 (218)
347 TIGR02673 FtsE cell division A 99.0 8E-09 1.7E-13 73.1 9.7 34 15-48 24-57 (214)
348 KOG3859 Septins (P-loop GTPase 99.0 3.9E-09 8.5E-14 75.9 7.9 131 16-152 39-191 (406)
349 cd03296 ABC_CysA_sulfate_impor 99.0 8.8E-09 1.9E-13 74.2 10.0 34 15-48 24-57 (239)
350 COG1125 OpuBA ABC-type proline 99.0 1.5E-09 3.3E-14 77.2 5.8 66 15-81 23-88 (309)
351 PRK11000 maltose/maltodextrin 99.0 5.4E-09 1.2E-13 79.8 9.3 34 15-48 25-58 (369)
352 cd03295 ABC_OpuCA_Osmoprotecti 99.0 4.6E-09 1E-13 75.8 8.5 34 15-48 23-56 (242)
353 cd03294 ABC_Pro_Gly_Bertaine T 99.0 6.5E-09 1.4E-13 76.2 9.3 34 15-48 46-79 (269)
354 COG2274 SunT ABC-type bacterio 99.0 1.1E-09 2.4E-14 89.2 5.8 37 15-51 495-531 (709)
355 PRK13537 nodulation ABC transp 99.0 7.6E-09 1.6E-13 77.2 9.7 34 15-48 29-62 (306)
356 cd03369 ABCC_NFT1 Domain 2 of 99.0 1.8E-09 4E-14 76.1 6.1 34 15-48 30-63 (207)
357 COG0050 TufB GTPases - transla 99.0 3.1E-09 6.8E-14 76.9 7.2 131 15-163 8-152 (394)
358 TIGR03796 NHPM_micro_ABC1 NHPM 98.9 9.1E-10 2E-14 90.7 5.1 34 16-49 502-535 (710)
359 TIGR03265 PhnT2 putative 2-ami 98.9 4.6E-09 1E-13 79.7 8.5 33 16-48 27-59 (353)
360 PRK10908 cell division protein 98.9 1.1E-08 2.4E-13 72.9 10.0 34 15-48 24-57 (222)
361 TIGR00958 3a01208 Conjugate Tr 98.9 1.4E-09 2.9E-14 89.7 6.0 35 15-49 503-537 (711)
362 TIGR03797 NHPM_micro_ABC2 NHPM 98.9 1.9E-09 4.1E-14 88.6 6.8 34 16-49 476-509 (686)
363 PRK11248 tauB taurine transpor 98.9 2.4E-08 5.3E-13 72.6 11.9 34 15-48 23-56 (255)
364 PRK13543 cytochrome c biogenes 98.9 2.2E-08 4.7E-13 71.0 11.3 34 15-48 33-66 (214)
365 TIGR02211 LolD_lipo_ex lipopro 98.9 4.3E-09 9.3E-14 74.9 7.7 34 15-48 27-60 (221)
366 cd03224 ABC_TM1139_LivF_branch 98.9 8.1E-09 1.8E-13 73.5 9.1 34 15-48 22-55 (222)
367 cd03213 ABCG_EPDR ABCG transpo 98.9 1.7E-08 3.8E-13 70.4 10.6 126 15-148 31-171 (194)
368 TIGR02204 MsbA_rel ABC transpo 98.9 1.1E-09 2.4E-14 88.2 5.2 34 15-48 362-395 (576)
369 cd03217 ABC_FeS_Assembly ABC-t 98.9 1.1E-08 2.3E-13 71.8 9.5 130 14-147 21-163 (200)
370 PRK13538 cytochrome c biogenes 98.9 1.8E-08 3.8E-13 70.9 10.6 34 15-48 23-56 (204)
371 TIGR03522 GldA_ABC_ATP gliding 98.9 4.6E-09 1E-13 78.2 8.0 34 15-48 24-57 (301)
372 PRK11247 ssuB aliphatic sulfon 98.9 9.1E-09 2E-13 74.9 9.3 34 15-48 34-67 (257)
373 cd03258 ABC_MetN_methionine_tr 98.9 5.2E-09 1.1E-13 75.0 8.0 34 15-48 27-60 (233)
374 PRK10771 thiQ thiamine transpo 98.9 1.1E-08 2.4E-13 73.4 9.6 34 15-48 21-54 (232)
375 KOG3886 GTP-binding protein [S 98.9 2.3E-09 5E-14 75.0 5.8 128 19-153 4-132 (295)
376 PRK00098 GTPase RsgA; Reviewed 98.9 6.4E-09 1.4E-13 77.3 8.6 61 18-82 163-229 (298)
377 PRK14250 phosphate ABC transpo 98.9 4.1E-09 8.8E-14 76.0 7.4 34 15-48 25-58 (241)
378 COG1124 DppF ABC-type dipeptid 98.9 1.9E-08 4E-13 71.2 10.3 36 15-50 29-64 (252)
379 PRK09452 potA putrescine/sperm 98.9 6.2E-09 1.3E-13 79.5 8.7 34 15-48 36-69 (375)
380 KOG0091 GTPase Rab39, small G 98.9 7.1E-09 1.5E-13 68.7 7.7 122 19-152 8-131 (213)
381 PRK10789 putative multidrug tr 98.9 1.5E-09 3.2E-14 87.4 5.5 34 15-48 337-370 (569)
382 cd03226 ABC_cobalt_CbiO_domain 98.9 1.5E-08 3.3E-13 71.3 9.9 34 15-48 22-55 (205)
383 cd03251 ABCC_MsbA MsbA is an e 98.9 2.3E-09 4.9E-14 77.0 5.8 34 15-48 24-57 (234)
384 COG1118 CysA ABC-type sulfate/ 98.9 1.7E-08 3.6E-13 73.7 10.1 38 14-51 23-60 (345)
385 TIGR03864 PQQ_ABC_ATP ABC tran 98.9 9.2E-09 2E-13 74.0 8.8 34 15-48 23-56 (236)
386 cd03262 ABC_HisP_GlnQ_permease 98.9 1.3E-08 2.7E-13 72.1 9.4 34 15-48 22-55 (213)
387 COG3840 ThiQ ABC-type thiamine 98.9 8.2E-09 1.8E-13 70.1 7.9 34 15-48 21-54 (231)
388 PRK10584 putative ABC transpor 98.9 6.6E-09 1.4E-13 74.3 8.0 34 15-48 32-65 (228)
389 cd03269 ABC_putative_ATPase Th 98.9 1.5E-08 3.3E-13 71.5 9.8 34 15-48 22-55 (210)
390 TIGR00968 3a0106s01 sulfate AB 98.9 1.2E-08 2.6E-13 73.4 9.3 34 15-48 22-55 (237)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.9 8.7E-09 1.9E-13 76.1 8.7 61 19-83 161-227 (287)
392 TIGR01189 ccmA heme ABC export 98.9 2.7E-08 5.9E-13 69.6 10.8 34 15-48 22-55 (198)
393 cd03268 ABC_BcrA_bacitracin_re 98.9 1.4E-08 3.1E-13 71.6 9.5 34 15-48 22-55 (208)
394 PRK10247 putative ABC transpor 98.9 4.8E-09 1E-13 74.9 7.1 34 15-48 29-62 (225)
395 KOG0448 Mitofusin 1 GTPase, in 98.9 1.8E-08 3.9E-13 80.1 10.7 134 16-162 106-286 (749)
396 cd00267 ABC_ATPase ABC (ATP-bi 98.9 1.5E-08 3.3E-13 68.3 9.2 117 16-147 22-139 (157)
397 COG4987 CydC ABC-type transpor 98.9 8.4E-10 1.8E-14 85.6 3.2 39 14-52 359-397 (573)
398 PRK12289 GTPase RsgA; Reviewed 98.9 3.7E-09 8E-14 79.9 6.7 61 20-84 173-239 (352)
399 PRK11160 cysteine/glutathione 98.9 2.3E-09 5.1E-14 86.3 6.0 35 15-49 362-396 (574)
400 cd01856 YlqF YlqF. Proteins o 98.9 7.7E-09 1.7E-13 70.8 7.7 59 17-80 113-171 (171)
401 COG1135 AbcC ABC-type metal io 98.9 2.2E-09 4.8E-14 78.3 5.2 135 13-150 26-204 (339)
402 TIGR01288 nodI ATP-binding ABC 98.9 1.7E-08 3.7E-13 75.2 10.1 34 15-48 26-59 (303)
403 TIGR01425 SRP54_euk signal rec 98.9 1.5E-07 3.2E-12 72.7 15.4 124 17-152 98-254 (429)
404 TIGR03258 PhnT 2-aminoethylpho 98.9 8.3E-09 1.8E-13 78.5 8.6 32 16-47 28-59 (362)
405 cd03292 ABC_FtsE_transporter F 98.9 1.3E-08 2.8E-13 72.1 9.0 34 15-48 23-56 (214)
406 KOG0410 Predicted GTP binding 98.9 9.8E-09 2.1E-13 75.3 8.4 131 13-151 172-308 (410)
407 cd03257 ABC_NikE_OppD_transpor 98.9 1.4E-08 2.9E-13 72.6 9.1 35 14-48 26-60 (228)
408 TIGR00157 ribosome small subun 98.9 2.9E-09 6.2E-14 76.9 5.6 61 19-84 120-186 (245)
409 PRK11629 lolD lipoprotein tran 98.9 7.7E-09 1.7E-13 74.2 7.8 34 15-48 31-64 (233)
410 PRK11144 modC molybdate transp 98.9 1.3E-08 2.7E-13 77.4 9.2 33 16-48 21-53 (352)
411 cd03300 ABC_PotA_N PotA is an 98.9 1.7E-08 3.6E-13 72.4 9.4 34 15-48 22-55 (232)
412 PRK13632 cbiO cobalt transport 98.9 5.8E-09 1.3E-13 76.5 7.2 34 15-48 31-64 (271)
413 PRK13648 cbiO cobalt transport 98.9 4.5E-09 9.9E-14 77.0 6.6 33 16-48 32-64 (269)
414 cd03244 ABCC_MRP_domain2 Domai 98.9 3.8E-09 8.2E-14 75.2 6.0 34 15-48 26-59 (221)
415 PF00448 SRP54: SRP54-type pro 98.9 5.5E-09 1.2E-13 73.0 6.5 74 69-154 84-157 (196)
416 PRK10416 signal recognition pa 98.9 3.8E-08 8.2E-13 73.6 11.4 126 17-152 112-274 (318)
417 TIGR02142 modC_ABC molybdenum 98.9 1.6E-08 3.5E-13 76.8 9.6 33 16-48 20-52 (354)
418 cd03254 ABCC_Glucan_exporter_l 98.9 2.8E-09 6E-14 76.3 5.2 34 15-48 25-58 (229)
419 TIGR01166 cbiO cobalt transpor 98.9 2E-08 4.4E-13 69.8 9.4 34 15-48 14-47 (190)
420 TIGR01192 chvA glucan exporter 98.9 3.9E-09 8.4E-14 85.2 6.5 33 16-48 358-390 (585)
421 cd03237 ABC_RNaseL_inhibitor_d 98.9 2.9E-08 6.3E-13 71.8 10.4 33 16-48 22-54 (246)
422 cd03267 ABC_NatA_like Similar 98.9 4.8E-08 1E-12 70.3 11.5 34 15-48 43-76 (236)
423 cd03253 ABCC_ATM1_transporter 98.9 3.9E-09 8.5E-14 75.8 5.8 34 15-48 23-56 (236)
424 PRK10851 sulfate/thiosulfate t 98.9 1.4E-08 3.1E-13 77.0 9.0 33 16-48 25-57 (353)
425 TIGR03608 L_ocin_972_ABC putat 98.9 1.4E-08 3E-13 71.5 8.4 33 16-48 21-53 (206)
426 TIGR01193 bacteriocin_ABC ABC- 98.9 2.2E-09 4.7E-14 88.5 5.0 34 16-49 497-530 (708)
427 COG1117 PstB ABC-type phosphat 98.9 2.7E-08 6E-13 69.2 9.5 34 13-46 27-60 (253)
428 COG4525 TauB ABC-type taurine 98.9 7.2E-08 1.6E-12 66.3 11.4 61 15-81 27-87 (259)
429 COG4152 ABC-type uncharacteriz 98.9 4.7E-09 1E-13 74.3 5.8 129 13-149 22-191 (300)
430 PRK11153 metN DL-methionine tr 98.9 8.9E-09 1.9E-13 77.9 7.8 34 15-48 27-60 (343)
431 PRK10895 lipopolysaccharide AB 98.9 1.6E-08 3.5E-13 72.9 8.8 34 15-48 25-58 (241)
432 cd03297 ABC_ModC_molybdenum_tr 98.9 2.5E-08 5.4E-13 70.6 9.6 33 15-48 20-52 (214)
433 TIGR01186 proV glycine betaine 98.9 2E-08 4.3E-13 76.4 9.5 34 15-48 15-48 (363)
434 cd03252 ABCC_Hemolysin The ABC 98.9 4.4E-09 9.5E-14 75.6 5.7 34 15-48 24-57 (237)
435 TIGR01846 type_I_sec_HlyB type 98.9 2.6E-09 5.6E-14 87.8 5.1 34 16-49 480-513 (694)
436 cd03219 ABC_Mj1267_LivG_branch 98.9 1.1E-08 2.4E-13 73.5 7.8 34 15-48 22-55 (236)
437 PRK13635 cbiO cobalt transport 98.9 6.4E-09 1.4E-13 76.6 6.6 34 15-48 29-62 (279)
438 cd03232 ABC_PDR_domain2 The pl 98.9 3.5E-08 7.6E-13 68.8 9.9 123 15-147 29-167 (192)
439 PRK13540 cytochrome c biogenes 98.9 2.3E-08 5E-13 70.1 9.0 34 15-48 23-56 (200)
440 TIGR01184 ntrCD nitrate transp 98.9 6.1E-08 1.3E-12 69.5 11.2 33 16-48 8-40 (230)
441 cd03214 ABC_Iron-Siderophores_ 98.9 1.1E-09 2.5E-14 75.5 2.2 34 15-48 21-54 (180)
442 PRK10575 iron-hydroxamate tran 98.9 1.2E-08 2.6E-13 74.6 7.7 34 15-48 33-66 (265)
443 KOG0088 GTPase Rab21, small G 98.9 3.7E-09 7.9E-14 69.7 4.4 118 18-152 12-133 (218)
444 KOG1144 Translation initiation 98.9 1.1E-08 2.4E-13 82.0 7.9 131 16-164 472-623 (1064)
445 PRK11614 livF leucine/isoleuci 98.9 2.1E-08 4.6E-13 72.1 8.8 34 15-48 27-60 (237)
446 COG2884 FtsE Predicted ATPase 98.9 4.8E-08 1E-12 66.8 9.8 37 13-49 22-58 (223)
447 cd03248 ABCC_TAP TAP, the Tran 98.9 3.7E-09 8E-14 75.5 4.8 34 15-48 36-69 (226)
448 PRK13539 cytochrome c biogenes 98.9 4.9E-08 1.1E-12 68.8 10.4 34 15-48 24-57 (207)
449 COG1161 Predicted GTPases [Gen 98.9 1.4E-08 3E-13 76.2 8.0 65 17-86 130-194 (322)
450 KOG4252 GTP-binding protein [S 98.9 1E-09 2.2E-14 73.8 1.7 123 15-152 16-139 (246)
451 TIGR01842 type_I_sec_PrtD type 98.8 7.5E-09 1.6E-13 82.9 6.9 34 15-48 340-373 (544)
452 PRK13644 cbiO cobalt transport 98.8 3.2E-08 7E-13 72.7 9.7 34 15-48 24-57 (274)
453 cd03299 ABC_ModC_like Archeal 98.8 3.1E-08 6.7E-13 71.2 9.5 33 16-48 22-54 (235)
454 TIGR02314 ABC_MetN D-methionin 98.8 3E-08 6.5E-13 74.9 9.7 34 15-48 27-60 (343)
455 KOG0393 Ras-related small GTPa 98.8 1.6E-08 3.4E-13 69.8 7.5 117 19-152 4-124 (198)
456 PRK15112 antimicrobial peptide 98.8 2.1E-08 4.5E-13 73.5 8.6 36 13-48 33-68 (267)
457 PRK11831 putative ABC transpor 98.8 2.3E-08 4.9E-13 73.3 8.8 34 15-48 29-62 (269)
458 cd03250 ABCC_MRP_domain1 Domai 98.8 6.7E-08 1.5E-12 67.9 10.9 34 15-48 27-60 (204)
459 PRK13647 cbiO cobalt transport 98.8 1.5E-08 3.3E-13 74.4 7.9 34 15-48 27-60 (274)
460 PRK13541 cytochrome c biogenes 98.8 6.2E-08 1.3E-12 67.7 10.5 34 15-48 22-55 (195)
461 cd03289 ABCC_CFTR2 The CFTR su 98.8 5.5E-09 1.2E-13 76.7 5.4 31 14-44 25-55 (275)
462 cd03245 ABCC_bacteriocin_expor 98.8 7.7E-09 1.7E-13 73.5 6.0 34 15-48 26-59 (220)
463 KOG3883 Ras family small GTPas 98.8 8.7E-08 1.9E-12 63.0 10.2 123 17-152 7-133 (198)
464 PRK09536 btuD corrinoid ABC tr 98.8 2.9E-08 6.3E-13 76.4 9.4 33 16-48 26-58 (402)
465 PRK15177 Vi polysaccharide exp 98.8 5.4E-08 1.2E-12 69.0 10.2 35 15-49 9-43 (213)
466 PRK13652 cbiO cobalt transport 98.8 9.5E-09 2.1E-13 75.6 6.5 34 15-48 26-59 (277)
467 KOG0058 Peptide exporter, ABC 98.8 7.3E-09 1.6E-13 82.9 6.2 42 14-55 489-530 (716)
468 KOG0461 Selenocysteine-specifi 98.8 4.2E-08 9.1E-13 72.7 9.6 121 16-152 4-137 (522)
469 PRK11607 potG putrescine trans 98.8 4.6E-08 1E-12 74.9 10.3 34 15-48 41-74 (377)
470 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 5.8E-09 1.2E-13 75.1 5.1 34 15-48 25-58 (238)
471 KOG0076 GTP-binding ADP-ribosy 98.8 6.9E-09 1.5E-13 69.4 5.0 123 16-152 14-141 (197)
472 TIGR03005 ectoine_ehuA ectoine 98.8 3.2E-08 6.9E-13 71.8 9.0 34 15-48 22-55 (252)
473 PRK13548 hmuV hemin importer A 98.8 5.3E-08 1.1E-12 71.0 10.2 34 15-48 24-57 (258)
474 PRK14247 phosphate ABC transpo 98.8 2.5E-08 5.5E-13 72.3 8.4 30 15-44 25-54 (250)
475 COG4555 NatA ABC-type Na+ tran 98.8 2.6E-08 5.6E-13 68.7 7.8 67 13-81 22-88 (245)
476 PRK10253 iron-enterobactin tra 98.8 1.8E-08 3.8E-13 73.7 7.6 34 15-48 29-62 (265)
477 TIGR03411 urea_trans_UrtD urea 98.8 2.1E-08 4.6E-13 72.3 7.9 34 15-48 24-57 (242)
478 TIGR03740 galliderm_ABC gallid 98.8 1E-07 2.2E-12 67.9 11.4 33 16-48 23-55 (223)
479 COG0488 Uup ATPase components 98.8 1.7E-08 3.7E-13 79.9 7.9 43 13-55 342-384 (530)
480 PRK14246 phosphate ABC transpo 98.8 8.4E-08 1.8E-12 69.9 10.9 34 15-48 32-65 (257)
481 PRK11264 putative amino-acid A 98.8 6.9E-08 1.5E-12 70.0 10.5 34 15-48 25-58 (250)
482 PRK09493 glnQ glutamine ABC tr 98.8 4.1E-08 8.9E-13 70.7 9.2 34 15-48 23-56 (240)
483 COG1127 Ttg2A ABC-type transpo 98.8 2.1E-08 4.6E-13 70.8 7.4 35 15-49 30-64 (263)
484 COG4619 ABC-type uncharacteriz 98.8 4.4E-09 9.6E-14 70.5 3.8 34 15-48 25-58 (223)
485 PRK10070 glycine betaine trans 98.8 4.8E-08 1E-12 75.2 9.9 34 15-48 50-83 (400)
486 PRK15439 autoinducer 2 ABC tra 98.8 3E-08 6.6E-13 78.9 9.2 34 15-48 33-66 (510)
487 KOG1486 GTP-binding protein DR 98.8 1.6E-08 3.5E-13 71.9 6.6 108 17-133 60-167 (364)
488 PRK14721 flhF flagellar biosyn 98.8 8.2E-08 1.8E-12 74.0 11.1 125 16-153 188-342 (420)
489 PRK09544 znuC high-affinity zi 98.8 6.7E-08 1.4E-12 70.2 10.1 34 15-48 26-59 (251)
490 cd03233 ABC_PDR_domain1 The pl 98.8 1E-07 2.2E-12 67.0 10.7 30 15-44 29-58 (202)
491 TIGR02769 nickel_nikE nickel i 98.8 3.4E-08 7.4E-13 72.2 8.6 35 14-48 32-66 (265)
492 COG1419 FlhF Flagellar GTP-bin 98.8 1.1E-07 2.3E-12 72.2 11.3 124 17-154 201-355 (407)
493 PRK11124 artP arginine transpo 98.8 5E-08 1.1E-12 70.4 9.2 34 15-48 24-57 (242)
494 cd03256 ABC_PhnC_transporter A 98.8 2.1E-08 4.6E-13 72.2 7.3 34 15-48 23-56 (241)
495 PRK14267 phosphate ABC transpo 98.8 4E-08 8.7E-13 71.3 8.7 31 15-45 26-56 (253)
496 PRK14251 phosphate ABC transpo 98.8 3.4E-08 7.4E-13 71.6 8.3 29 16-44 27-55 (251)
497 cd03288 ABCC_SUR2 The SUR doma 98.8 1E-08 2.3E-13 74.6 5.6 33 16-48 44-76 (257)
498 PRK14722 flhF flagellar biosyn 98.8 7.7E-08 1.7E-12 73.1 10.4 132 16-154 134-298 (374)
499 TIGR00972 3a0107s01c2 phosphat 98.8 3.6E-08 7.7E-13 71.4 8.3 32 15-46 23-54 (247)
500 TIGR03415 ABC_choXWV_ATP choli 98.8 2.8E-08 6.1E-13 76.0 8.0 34 15-48 46-79 (382)
No 1
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.95 E-value=5.4e-27 Score=164.01 Aligned_cols=141 Identities=53% Similarity=0.844 Sum_probs=120.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||+|+|+|......+....+.|..+......+ .+..+.++||||+.++.........++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999887666555667787777777777 788999999999998766556666777777777
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhc
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE 164 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~ 164 (170)
...++|++++|+++.+ ++..+...++.+.+.+++..++++++|+||+|.+.. .++++|++..
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~~ 141 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLENS 141 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHhc
Confidence 7789999999999985 999999999999999999888999999999999987 4788888774
No 2
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.95 E-value=9.1e-28 Score=169.58 Aligned_cols=141 Identities=45% Similarity=0.774 Sum_probs=115.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+|+|++|+||||++|+|+|...+..+....+.|..+......+ .+..+.++||||+.+.....+....++..++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4799999999999999999999998777666667777777777766 899999999999998776667777888888877
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhc
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE 164 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~ 164 (170)
..+++|++|||++.. +++..+...++.+.+.|+..++++++||+|++|.+.+. .+++|+++.
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~ 141 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKE 141 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHH
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhcc
Confidence 889999999999998 99999999999999999999999999999999999884 688888743
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.90 E-value=7.9e-23 Score=149.23 Aligned_cols=145 Identities=25% Similarity=0.382 Sum_probs=105.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..+..+|+++|.+|+||||++|+|+|......... .+.+.......... .+..+.++||||+.+... ...+...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~----~~e~~~~ 108 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGY----INDQAVN 108 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHH----HHHHHHH
Confidence 34668999999999999999999999875333211 12222222222333 688999999999997532 2222222
Q ss_pred HHHh--ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhcCCC
Q 046239 96 CIGL--AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPK 167 (170)
Q Consensus 96 ~~~~--~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~ 167 (170)
.++. ...++|++|||..++ .+++..+...++.+.+.||...++++|+|+||+|...+++.++++|+.+ +..
T Consensus 109 ~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~ 182 (313)
T TIGR00991 109 IIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSE 182 (313)
T ss_pred HHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHH
Confidence 2221 234799999997764 3788889999999999999999999999999999886666789999987 443
No 4
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.87 E-value=5.3e-21 Score=150.24 Aligned_cols=147 Identities=23% Similarity=0.286 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+|+|+|++|+||||++|+|+|...+....... .|+........+ .+..+.|+||||+.++.... ....++...+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHH
Confidence 34689999999999999999999987655533333 344443333334 67889999999999864432 2333444444
Q ss_pred Hhc--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-----hhHHHHhhhcCCCC
Q 046239 98 GLA--KGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-----KTLEDYLGHECPKP 168 (170)
Q Consensus 98 ~~~--~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-----~~~~~~~~~~~~~~ 168 (170)
..+ ..++|++|||+.++ ...+.++...++.+.+.||..+|+++|||+||+|.+.+++ .++++|+.+ ++..
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~ 271 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHI 271 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHH
Confidence 332 24689999999875 2333467789999999999999999999999999997432 589999977 5543
No 5
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.87 E-value=1.3e-20 Score=135.60 Aligned_cols=137 Identities=30% Similarity=0.339 Sum_probs=100.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
......+|+++|++|+|||||+|+|+|......+. ..+.|.........+ .+..+.++||||+.+..... ....+..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~ 103 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKIL 103 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHH
Confidence 45566899999999999999999999987544432 334555555555555 67889999999999753211 1222233
Q ss_pred HHHHhc--cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 95 KCIGLA--KGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 95 ~~~~~~--~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
..+..+ ...+|++++|..++ .+++..+..+++.+.+.++...+.++++|+||+|...+++
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 322222 24678999998775 4678888999999999999888999999999999875543
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=135.26 Aligned_cols=125 Identities=22% Similarity=0.296 Sum_probs=103.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
...++++|+|++|||||+|.|+|....-. ++.+.|+...+..+.......++++||||++.+ .+..++.+.+.+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIv--S~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~ 80 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAAR 80 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEee--cCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHH
Confidence 45789999999999999999999887543 444556555555555446789999999999976 4667778888888
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
..+..+|+++||+++++.+...+...++.+... ..|+++++||.|.+.++
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 899999999999999988999998888888872 24999999999999884
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=4.2e-20 Score=139.32 Aligned_cols=124 Identities=24% Similarity=0.245 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+.|+++|++++|||||+|.|+|...+-. ...++.|....+....| .+..+.++||+|+.+. .++....++..+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~--~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDG--DEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcC--CchHHHHHHHHHHHH
Confidence 6899999999999999999999887655 34568888888888888 6778999999999853 234577788888888
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++|||+|...++++.|..+.++|+.. .+|+++|+||+|..+.
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~ 127 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKA 127 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchh
Confidence 88999999999999989999999999998843 2599999999998744
No 8
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=5.2e-19 Score=120.75 Aligned_cols=129 Identities=21% Similarity=0.235 Sum_probs=99.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc---hHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS---EFVGK 91 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~ 91 (170)
+.....-|+++|+|++|||||||+|++.........++|.|.....+... ..++++|.||++...... +.+..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHH
Confidence 34466789999999999999999999977544445677888877766653 348999999999755443 33444
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.+..++... ....++++++|+.+.+...|.++++++.+.- .|+++++||+|++...
T Consensus 96 ~i~~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 96 LIEEYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLKKS 151 (200)
T ss_pred HHHHHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCChh
Confidence 445555433 3478899999999899999999999998862 4999999999999874
No 9
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.83 E-value=3e-19 Score=114.82 Aligned_cols=116 Identities=25% Similarity=0.335 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||+|+|++......+.. .+.|.......+.+ .+..+.++||||+.+...... ....+....+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~-~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDN-DGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHH-HHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhH-HHHHHHHHHHHH
Confidence 589999999999999999998653333332 34555454444555 678889999999987432222 112233344444
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEc
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTG 146 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (170)
..+|++++|+++.+..+..+..+++++. ...|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 8889999999987544445566666663 12599999998
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=1.4e-18 Score=115.98 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~ 98 (170)
+|+++|.+++|||||||+|+|..... ...++.|.......+.+ .+..+.++|+||.++..... +....+++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v--~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l---- 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKV--GNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEERVARDYL---- 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE--EESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHHHHHHHHH----
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcee--cCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHHHHHHHHH----
Confidence 68999999999999999999998543 23467777777777777 67999999999998754332 22222221
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
...++|++++|+|+. .+ ..+..+..++.+. + .|+++++||+|.....+
T Consensus 75 -~~~~~D~ii~VvDa~-~l-~r~l~l~~ql~e~---g--~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 75 -LSEKPDLIIVVVDAT-NL-ERNLYLTLQLLEL---G--IPVVVVLNKMDEAERKG 122 (156)
T ss_dssp -HHTSSSEEEEEEEGG-GH-HHHHHHHHHHHHT---T--SSEEEEEETHHHHHHTT
T ss_pred -hhcCCCEEEEECCCC-CH-HHHHHHHHHHHHc---C--CCEEEEEeCHHHHHHcC
Confidence 247899999999997 32 2333444555543 2 59999999999875543
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=4.7e-18 Score=124.32 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||+|+|+|...... ...+.|+...........+..+.++||||+.+.. ......+.+.+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v--s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT--SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec--CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 689999999999999999999765322 2222233223333322245678999999998642 22333344445556
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+|++++|+|+++..+.. ..+++.+... ..|+++|+||+|+...
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKFK 122 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCCH
Confidence 67889999999998554433 3444444432 2599999999998744
No 12
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=1e-17 Score=123.86 Aligned_cols=124 Identities=22% Similarity=0.321 Sum_probs=85.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
...|+++|++|+|||||+|+|+|...... ...+.|+...........+..+.++||||+.+.. ......+...+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 46799999999999999999999765332 2222333333322222144689999999998643 223344555555
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+.+.++..+..+++.+... ..|+++|+||+|+...
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKD 128 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCC
Confidence 567889999999999866776666666655532 2499999999999843
No 13
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.78 E-value=3.9e-17 Score=112.60 Aligned_cols=128 Identities=19% Similarity=0.250 Sum_probs=83.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+.....+|+++|++|+|||||+|+|++...........+.|.....+.. ...+.++||||+........ ...++.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpG~~~~~~~~~-~~~~~~ 88 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----NDGFRLVDLPGYGYAKVSKE-EKEKWQ 88 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----CCcEEEEeCCCCccccCChh-HHHHHH
Confidence 3466789999999999999999999987421111223344444443332 24789999999875322211 111222
Q ss_pred HHHH---hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIG---LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~---~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.... ......+++++|+++..+++..+...++.+... ..|+++++||+|....
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence 1111 122356899999999878888887766666542 2589999999998754
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.6e-17 Score=111.66 Aligned_cols=120 Identities=24% Similarity=0.286 Sum_probs=83.6
Q ss_pred EEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccC
Q 046239 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKG 102 (170)
Q Consensus 23 ~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
+++|.+|+|||||+|+|++...... ....+.|.........+ .+..+.++||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 4789999999999999998753222 12334444444445554 567899999999987532 233334444444556
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 103 GIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 103 ~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
++|++++|+++.+..+..+..+.+++... ..|+++|+||+|+...
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~~ 120 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-----KKPVILVVNKVDNIKE 120 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-----CCCEEEEEECcccCCh
Confidence 78999999999766666666666666543 1599999999998876
No 15
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=4.7e-17 Score=124.03 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=81.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
.|+|+|.+++|||||+|+|++... .. ...+..|.......+.+.....++++||||+.+..........++++.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KV-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cc-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence 599999999999999999998664 11 223344544455555553345799999999987543333344555543
Q ss_pred cCCccEEEEEEeCCC---C-CCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARN---R-FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+++++++|+|+.. . .......+++.+.........+|.++|+||+|+...
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 456699999999861 1 112224445555543221223699999999998754
No 16
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=6.2e-17 Score=108.69 Aligned_cols=122 Identities=26% Similarity=0.286 Sum_probs=81.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+.+|+++|++|+|||||++++++........ ..+.+.........+ .+..+.++||||+.+...... ........
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~ 75 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDEIE---KIGIERAR 75 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEEEe-CCEEEEEEECCCcCCCcchHH---HHHHHHHH
Confidence 3589999999999999999999876432221 223333333334444 567899999999987543211 11111222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|+|+.+..+..+...+.. ....|+++|+||+|+...
T Consensus 76 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 76 EAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred HHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence 34568899999999986666666555443 112599999999998865
No 17
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=6.5e-17 Score=121.59 Aligned_cols=124 Identities=23% Similarity=0.314 Sum_probs=84.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|.+|+|||||+|+|++....... .....|.......+.+ .+..+.++||||+.+... .....+.+.+.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 348999999999999999999987653221 1222333322333444 567899999999975321 23334444444
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+..+|++++|+|..+.++..+..+++.+.+. . .|.++|+||+|+...
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~---~--~p~IlViNKiDl~~~ 175 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL---N--IVPIFLLNKIDIESK 175 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc---C--CCEEEEEEhhcCccc
Confidence 456788999999998777777766666666543 1 367889999998654
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=6.3e-18 Score=127.68 Aligned_cols=134 Identities=25% Similarity=0.268 Sum_probs=97.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+|+++|++++|||||+|+|+|....-... ..+.|...-...+++ +++.+.++||.|+-.-..-.+.. +..+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~-~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~--E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSD-IAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESV--EKYSVA 252 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecC-CCCccccceeeeEEE-CCeEEEEEECCCCCcccccccce--EEEeeh
Confidence 46899999999999999999999988755432 345666655566666 79999999999997532211111 111111
Q ss_pred --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHH
Q 046239 98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDY 160 (170)
Q Consensus 98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 160 (170)
......++++++|+|+.++++.+|.+.+..+.+.. +++++|+||||+++.+....+++
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~ 312 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEF 312 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHH
Confidence 12345669999999999999999999988888753 58999999999998743344443
No 19
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=8.7e-17 Score=109.58 Aligned_cols=127 Identities=22% Similarity=0.224 Sum_probs=79.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.++||||+.+.................
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 4689999999999999999999875322211 122222222223333 56678999999998643222111111111112
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+.+..+.....++..+... . .|+++++||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCc
Confidence 244678999999999877666655554443332 2 599999999998766
No 20
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=4.3e-17 Score=111.16 Aligned_cols=125 Identities=21% Similarity=0.208 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ-VVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|+++|++|+|||||+|+|++...... . .++.|.........+ .+. .+.++||||+.+...........+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-~-~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-D-YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-C-CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 589999999999999999998653111 1 112233333333344 344 89999999986432111112222222
Q ss_pred ccCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNR-FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+.+. -+... ..+.+.+.+........|+++|+||+|+...
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 22357999999999744 22222 3444445443222223689999999998765
No 21
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=4.6e-17 Score=126.30 Aligned_cols=122 Identities=23% Similarity=0.278 Sum_probs=92.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||+|.|++...... ...++.|.........+ .+..+.++||||+... .......+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999998764322 22345665556666666 7788999999998642 122344555556666
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+|++++|+|+.++++..+..+.+++++. ..|+++|+||+|....
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-----GKPVILVANKIDGKKE 122 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-----CCCEEEEEECccCCcc
Confidence 7788999999999888888888888888763 2599999999998765
No 22
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=9.8e-17 Score=108.48 Aligned_cols=123 Identities=24% Similarity=0.275 Sum_probs=80.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|++|+|||||+|.+++.......... ..+.......... .+..+.++||||+..+.... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP-QTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCC-CceeceEEEEEEc-CCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 468999999999999999999987643322211 2222222222222 45678999999998643211 122333334
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.....+|++++|+++.+..+.....+.+.+... . .|+++|+||+|+..
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~ 125 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS---K--TPVILVLNKIDLVK 125 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh---C--CCEEEEEEchhccc
Confidence 456778999999999866565565555555543 1 48999999999873
No 23
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=1.1e-16 Score=108.87 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=78.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+.|+++|.+|+|||||+|+|++...... ...+.|........... .+..+.++||||...+ ....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~-----------~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF-----------TNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH-----------HHHH
Confidence 3689999999999999999997654322 22234444443444431 3678999999998641 2222
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
......+|++++|+++++.........+..+... ..|+++|+||+|+....
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA-----NVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc-----CCCEEEEEEceeccccc
Confidence 3345678999999999865555555555554431 25899999999987553
No 24
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=3.6e-16 Score=117.09 Aligned_cols=126 Identities=19% Similarity=0.196 Sum_probs=82.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
.|+|+|.++||||||+|+|++.... . ...+..|.......+.+.....+.++|+||+.+..........++++.+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-v-a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--- 234 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-I-ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--- 234 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-c-CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh---
Confidence 4899999999999999999986532 1 2223345555555555534568999999999864433333444554433
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+++++++|+|+++..+.++ ..+.+.+.........+|+++|+||+|+...
T Consensus 235 -e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 235 -ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred -hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 45699999999974333333 3344445443221124699999999998755
No 25
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=1.6e-16 Score=108.13 Aligned_cols=124 Identities=24% Similarity=0.193 Sum_probs=76.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-HHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~ 98 (170)
++|+++|.+|+|||||+|++++...... .....|.........+ .+..+.++||||+.+...... ....... .
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~---~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAI---T 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHH---H
Confidence 4789999999999999999998764211 1122344344444444 567899999999964322111 1111111 1
Q ss_pred hccCCccEEEEEEeCCCCCC---HHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFS---QEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......|++++|+|+.+..+ .....+++.+.+.+. ..|+++|+||+|....
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF 128 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch
Confidence 11223588999999974432 222345555554332 2599999999998765
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.7e-16 Score=124.22 Aligned_cols=125 Identities=24% Similarity=0.203 Sum_probs=91.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..++|+|+|.+|+|||||+|+|++...... ...++.|.........+ .+..+.++||||+... .......+...+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 346899999999999999999998654322 23445555555555666 6778999999998731 122334455555
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|+.++.+..+..+++++... ..|+++|+||+|+...
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG 161 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc
Confidence 5566788999999999878777777777766542 2599999999997643
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=2.9e-16 Score=122.10 Aligned_cols=129 Identities=22% Similarity=0.207 Sum_probs=88.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+++++|.+|+|||||+|+|++......+. ..+.|.........+ .+..+.++||||+.................
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 356899999999999999999999876433322 234444443334444 677899999999976433222111111111
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+.++.+.++...+..+.+. . .|+++++||+|+...
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~---~--~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLRIAGLALEA---G--RALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CcEEEEEECccCCCH
Confidence 12245677999999999988888887777666543 2 589999999998844
No 28
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=3.5e-16 Score=121.40 Aligned_cols=126 Identities=22% Similarity=0.221 Sum_probs=86.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+++++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+..................
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4578999999999999999999987643221 2233444433344444 5678999999999765433222211111111
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
......+|++++|+|+.++.+..+...+..+.+. . .|+++|+||+|++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA---G--KALVIVVNKWDLV 296 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEECcccC
Confidence 2345678999999999988888887776665543 2 5999999999998
No 29
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.73 E-value=2.1e-16 Score=107.01 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|++|+|||||+|+|++...... .....+.|.........+..+..+.+|||||+.. +......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 689999999999999999997532111 1111234444444445552267899999999853 2222233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+++.........+..+.. .+ .+|+++++||+|+...
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~---~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILEL-LG---IKRGLVVLTKADLVDE 119 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hC---CCcEEEEEECccccCH
Confidence 4567899999999975544444444443332 22 1389999999998754
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=1.6e-16 Score=123.51 Aligned_cols=122 Identities=23% Similarity=0.237 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
++|+++|.+|+|||||+|.|++....... ..++.|.........+ .+..+.++||||+.... ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 57999999999999999999987643222 2344555555555666 67889999999998621 1233445555555
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+...+|++++|+|+.++++..+..+.+++... ..|+++|+||+|..+
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD 123 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence 66788999999999878888888777777764 259999999999654
No 31
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=6.1e-17 Score=112.89 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=82.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
..+|+++|..++|||||+++|++...... .....+.|.......+.+ .+..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 46899999999999999999986421100 011334555554444544 567889999999863
Q ss_pred CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|+.++....+...+..+.+.- . .++++++||+|++..
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~---~-~~iIvviNK~D~~~~ 133 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG---V-PYIVVFLNKADMVDD 133 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC---C-CcEEEEEeCCCCCCc
Confidence 3333344556789999999998788888878777766641 1 247899999998753
No 32
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=8.4e-16 Score=117.95 Aligned_cols=125 Identities=20% Similarity=0.183 Sum_probs=81.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
.|+++|.+++|||||+|+|++..... ...+..|.......+.+..+..+.++|+||+.+..........++++.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 79999999999999999999866321 1233445555555555533678999999999764333333444544433
Q ss_pred cCCccEEEEEEeCCCC--CCH--HHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 101 KGGIHAVLVVFSARNR--FSQ--EEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.+++++++|+|+++. ... ....+.++|.........+|.+||+||+|+..
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~ 288 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE 288 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence 456999999999632 122 22344555555432223469999999999643
No 33
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=2.8e-17 Score=114.16 Aligned_cols=118 Identities=22% Similarity=0.313 Sum_probs=84.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccc----------------cCCCCceeEEEeeEEEE--eeCCceEEEEeCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA----------------SAGSSGVTITCEMKTTV--LKDGQVVNVIDTPGL 79 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~ 79 (170)
+..+|+++|+.++|||||+++|++...... .....+.|......... . ....+.++||||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeecccccc
Confidence 457899999999999999999985432110 00112334434444444 4 7889999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+ +..........+|++++|+|+.+++.....+.+..+...- .|+++++||+|.+..
T Consensus 81 ~~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~~~ 137 (188)
T PF00009_consen 81 ED-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG-----IPIIVVLNKMDLIEK 137 (188)
T ss_dssp HH-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT------SEEEEEETCTSSHH
T ss_pred cc-----------eeecccceecccccceeeeecccccccccccccccccccc-----cceEEeeeeccchhh
Confidence 63 3333334567889999999998899988888888776652 489999999999943
No 34
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.72 E-value=4.5e-16 Score=113.94 Aligned_cols=127 Identities=23% Similarity=0.326 Sum_probs=82.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEee-CC--ceEEEEeCCCCCCCCCCchHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLK-DG--QVVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~ 89 (170)
..+|+++|++|+|||||+|+|++......... ....|........... .+ ..+.++||||++++..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~-~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD-C 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh-h
Confidence 46899999999999999999998765433211 1223332332222221 23 4689999999998654332 2
Q ss_pred HHHHHH--------HH-------H---hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 90 GKEIVK--------CI-------G---LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 90 ~~~~~~--------~~-------~---~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
...+.. ++ + ....++|+++|+++.. .++...+..+++.+.+. .|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 222221 11 1 0123689999999986 46777888888877652 4999999999998
Q ss_pred CC
Q 046239 151 ED 152 (170)
Q Consensus 151 ~~ 152 (170)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 74
No 35
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.71 E-value=3.1e-16 Score=109.73 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee-EEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-ITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||+|+|+|......+....+.. .......+.......+.++||||+.+.....+ +++..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~-- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE-- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH----HHHHH--
Confidence 579999999999999999999965443332222211 01111112211235789999999986433222 22221
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+.|+++++.+ .+++..+..+++.+.+. + .|+++|+||+|+...
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLS 122 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhh
Confidence 23467788888754 47888898888888775 2 489999999998643
No 36
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.71 E-value=2.4e-15 Score=104.95 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=79.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (170)
.....+|+++|.+|+|||||+|+|++...........+.|....... + ...+.++||||+........ .....+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V--NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c--CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 34567899999999999999999998642212222334444333322 2 46899999999865322221 111112
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...........++++++++...+.+..+..+.+++... ..|++++.||+|++..
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCCH
Confidence 21111223455788888888766766665555555432 2489999999999865
No 37
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.71 E-value=5e-16 Score=105.57 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=75.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|++|+|||||++++.+.......... .+.......+.+ .+ ..+.++||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT--IGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc--cceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence 478999999999999999999865432221111 112223333444 33 3678999999753 3333
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|+++..+... ..+++.+....... .|+++|.||+|+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence 4445678899999999975433222 34444444432222 489999999998755
No 38
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.71 E-value=6.1e-16 Score=115.72 Aligned_cols=127 Identities=21% Similarity=0.227 Sum_probs=79.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
..|+++|.+++|||||+|+|++..... ...+..|.......+.+.....+.++|+||+.+...........+++.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 358999999999999999999865321 1122334444444455523378999999999764433333444444433
Q ss_pred ccCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNR---FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+++++++|+|+++. -...+ ..+.+++.........+|+++|+||+|+...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 456999999999732 11122 2334444443222234699999999998765
No 39
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=111.03 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=88.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc-hHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~ 95 (170)
..-+.|++.|.+++|||||++.|++..+-. ...+-+|.......+.. ...+++++||||+.+-...+ +.+..+-..
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEv--A~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEV--APYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCcc--CCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 356789999999999999999999976522 23444555566666655 67799999999999743322 222222221
Q ss_pred HHHhccCCccEEEEEEeCC--CCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSAR--NRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~--~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+...-.++++|++|++ .+++-+ +..+++.+...|. .|+++|+||.|..+.
T Consensus 243 ---AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 243 ---ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred ---HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 1223447899999997 455554 4677888888875 499999999998855
No 40
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=6.6e-16 Score=105.85 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.......+++++|++|+|||||++++++...... ..|.........+ .+..+.++||||... +
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~ 71 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------L 71 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------H
Confidence 3445568999999999999999999998643211 1122223333444 567789999999864 2
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL 161 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~ 161 (170)
...+..+...+|++++|+|+.+.-+..+ ...++.+.+.. ....|+++|.||+|+.... .+.+++++
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 140 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREAL 140 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHh
Confidence 3334455678899999999974422222 22223332211 1235999999999987542 13444444
No 41
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=118.74 Aligned_cols=130 Identities=27% Similarity=0.309 Sum_probs=96.9
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
...-..+.+++++|+|++|||||+|+|++...+.... -+|+|...-...+.. .+..+.++||.|+-++...-+..+-+
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTd-I~GTTRDviee~i~i-~G~pv~l~DTAGiRet~d~VE~iGIe 288 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTD-IAGTTRDVIEEDINL-NGIPVRLVDTAGIRETDDVVERIGIE 288 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecC-CCCCccceEEEEEEE-CCEEEEEEecCCcccCccHHHHHHHH
Confidence 3445678899999999999999999999998766533 335666666666666 89999999999999765444444333
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
. .......+|.+|+|+|+++..+..+...++ .... .+|+++|.||.|+....
T Consensus 289 R---s~~~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~--~~~~i~v~NK~DL~~~~ 340 (454)
T COG0486 289 R---AKKAIEEADLVLFVLDASQPLDKEDLALIE----LLPK--KKPIIVVLNKADLVSKI 340 (454)
T ss_pred H---HHHHHHhCCEEEEEEeCCCCCchhhHHHHH----hccc--CCCEEEEEechhccccc
Confidence 2 223456789999999998767777777666 2222 25999999999988763
No 42
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.71 E-value=1.1e-15 Score=107.35 Aligned_cols=129 Identities=24% Similarity=0.223 Sum_probs=79.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..-.+|+++|++|+|||||+|.+++....... ....|.........+.....+.++||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 34479999999999999999999987532221 1123333333344442334899999999964211 1111222222
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+ .....+|++++|+|+++.....+. .+.+.+...... ..|+++|+||+|+...
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~--~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAE--DIPMILVLNKIDLLDD 168 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcC--CCCEEEEEEccccCCh
Confidence 2 234578999999999755444443 333444433211 2599999999998766
No 43
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.70 E-value=4.1e-16 Score=106.03 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=74.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccC--CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASA--GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||++.|++......+. .....|.......+.+ .+..+.++||||+.. +...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 48999999999999999998754321111 1122333333344555 578899999999874 223334
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|+|+.+.-+. .....++.+.+.. ....|+++++||+|....
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 456788999999998633211 1222333333321 123599999999998655
No 44
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.6e-15 Score=117.96 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
..|+|+|.+++|||||+|+|++..... ...+..|.......+.+ .+..+.++|+||+.+..........+++..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrh--- 233 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRH--- 233 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHH---
Confidence 358999999999999999999865421 22334555555555555 567899999999975433333344444443
Q ss_pred ccCCccEEEEEEeCCCCC----CHHHH-HHHHHHHHHhc---------ccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRF----SQEEE-AAVHRLPTLFG---------KKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~----~~~~~-~~~~~l~~~~~---------~~~~~~~ivv~tk~D~~~~ 152 (170)
..+++++++|+|++... ...+. .+.+.|..... ....+|.+||+||+|+.+.
T Consensus 234 -ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 234 -IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred -HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 34569999999986311 11122 22334443321 1224699999999998755
No 45
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.70 E-value=1e-15 Score=118.59 Aligned_cols=126 Identities=18% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..++.+|+++|++|+|||||+|+|++....... ..++.|.......+.+ .+..+.++||||+.++....+. .-..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~~~ie~---~gi~ 274 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHADFVER---LGIE 274 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccchhHHHH---HHHH
Confidence 456689999999999999999999987543222 2334555555555666 6778999999999764311111 1112
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|++++.+..+. ++..+.. . ..|+++|+||+|+...
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~--~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---S--KKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---C--CCCEEEEEECccCCCc
Confidence 222345678999999999866665543 3333321 1 2599999999998654
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.70 E-value=7.9e-16 Score=104.47 Aligned_cols=118 Identities=18% Similarity=0.175 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|++|+|||||++++++...........+. ......... .....+.++||||... +......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGI--DYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce--eEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHHH
Confidence 7899999999999999999987653322212111 111222222 1235678999999863 2233334
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc---cccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK---KIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~ivv~tk~D~~~ 151 (170)
....++++++|+|++++.+... ..++..+.+.... ....|+++|.||+|...
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 5678899999999974432222 3444445444332 12358999999999873
No 47
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.70 E-value=3.7e-16 Score=108.09 Aligned_cols=115 Identities=20% Similarity=0.168 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCC--------------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 86 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (170)
+|+++|.+|+|||||+|+|++......... ..+.+.........+ ....+.++||||+.++
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999998754322110 112333333344444 4678999999998642
Q ss_pred hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 87 EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..........+|++++|+|+.+.........+..+.. ...|+++|+||+|+...
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE 129 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch
Confidence 2222333457799999999987776666666655544 12599999999999863
No 48
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=6.9e-16 Score=112.57 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=83.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhC---Ccccc-------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 21 TVVLLGRTGNGKSATGNSILG---RKAFK-------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~---~~~~~-------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
+|+++|++|+|||||+++|+. ..... ......+.|.......+.| .+..+.++||||+.++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 489999999999999999963 21110 0112345666666677777 7889999999998752
Q ss_pred CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
...+......+|++++|+|+.++....+...++.+... + .|+++++||+|....+
T Consensus 78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNK~D~~~a~ 132 (270)
T cd01886 78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY---N--VPRIAFVNKMDRTGAD 132 (270)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence 22233455667999999999878877777777766543 2 4899999999988653
No 49
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=8e-17 Score=114.59 Aligned_cols=128 Identities=23% Similarity=0.183 Sum_probs=86.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..++.+++++|.+|+|||||||+|++........... ++.........+ .+..+.+|||||+++...... +.+.
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~-~t~~~~~~~~~~-~~~~l~lwDtPG~gdg~~~D~----~~r~ 109 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV-GTDITTRLRLSY-DGENLVLWDTPGLGDGKDKDA----EHRQ 109 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeeccc-CCCchhhHHhhc-cccceEEecCCCcccchhhhH----HHHH
Confidence 5567788899999999999999999644322211111 111111111112 568999999999998543333 3444
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+...+++.|++++++++.++.-.-+.++++.+...... +++++++|.+|...+
T Consensus 110 ~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p 163 (296)
T COG3596 110 LYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEP 163 (296)
T ss_pred HHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhcc
Confidence 455566778999999999877666677777776665332 599999999998755
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=7.3e-16 Score=104.27 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++...........+ ........... ....+.++|+||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIG--VEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee--eeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 3789999999999999999997664332222211 11111222221 124678999999864 222333
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+++..+... ..++..+....... .|++++.||+|....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~ 120 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQ 120 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchh
Confidence 45678899999999985433332 23444444333223 489999999998754
No 51
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.70 E-value=9.9e-16 Score=103.52 Aligned_cols=116 Identities=18% Similarity=0.149 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||++++++...... ..+..+.........+ .+ ..+.+|||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 789999999999999999998765332 1222222222233333 22 3588999999753 233344
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|++++++-+..+ ..++..+....+. ..|++++.||+|....
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~ 120 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK 120 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence 45678899999999974433222 2333433333221 2599999999998644
No 52
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.70 E-value=9.3e-16 Score=104.62 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=72.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||++.+++...........+.+.......... ....+.++||||... +......
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 72 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDG-KQIKLQIWDTAGQES-----------FRSITRS 72 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEECCCcHH-----------HHHHHHH
Confidence 6899999999999999999998764333222222222112122211 234688999999653 3333344
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+++..+..+ ..++..+..... ...|+++|.||.|+...
T Consensus 73 ~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 73 YYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESR 124 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc
Confidence 5678899999999974322222 223333333221 22589999999998743
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=8.3e-16 Score=120.44 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=84.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+|+++|++|+|||||+|+|++...... ....+.|.......+.+ .+..+.++||||+....... ...+.....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 458999999999999999999998764222 12333444333334444 67788999999985421111 111222221
Q ss_pred --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|++++.+..+...+..+.+. . .|+++|+||+|+...
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA---G--RALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh
Confidence 1245688999999999888888887766655442 2 599999999998764
No 54
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=6.9e-16 Score=104.57 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|.+|+|||||++.+++...........+.+.. ....... ....+.+|||||... +.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLY--KHNAKFEGKTILVDFWDTAGQER-----------FQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEE--EEEEEECCEEEEEEEEeCCCchh-----------hhhhhH
Confidence 36899999999999999999876542221111111211 1112221 234577999999864 233444
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.+..++|++++|+|++++.+..+ ..+++.+.+.. ...|+++|.||+|+..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLDP 118 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCch
Confidence 56778899999999975544333 33444444432 1259999999999743
No 55
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.69 E-value=1.3e-15 Score=103.53 Aligned_cols=118 Identities=15% Similarity=0.109 Sum_probs=72.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++.........+ .+........... ....+.+|||||... +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVST--VGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--eeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 57999999999999999999986642221111 1111222222221 124688999999763 233344
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+++++++|+|..+..+... ..+++.+.+.... ..|+++|.||+|+.+.
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~ 121 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE 121 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence 56788999999999874322221 2333333332211 2489999999998755
No 56
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.69 E-value=1.7e-15 Score=114.32 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=80.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|.+|+|||||+|+|++...... ...+.|.........+..+..+.++||||+... .+......+...
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~t 262 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRAT 262 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHH
Confidence 3448999999999999999999999763221 112233333334444535678999999999531 112222223322
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
. .....+|++++|+|++++....+.. +.+.+.+. +. ...|+++|+||+|+...
T Consensus 263 l-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 263 L-EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred H-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence 2 2356789999999998555444432 23334332 21 12599999999998754
No 57
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.69 E-value=1.2e-15 Score=106.47 Aligned_cols=116 Identities=17% Similarity=0.226 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCC--cccccc------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGR--KAFKAS------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~--~~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (170)
++|+++|.+|+|||||++++++. ...... ....+.+.......+.+ ....+.++||||+.+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 58999999999999999999862 111110 01122333333334444 567899999999975
Q ss_pred chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+......+..++|++++|+|+.+........++..+.. .. .|+++|+||+|+...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 22333345667899999999986554444444433322 22 489999999998755
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=2.6e-15 Score=122.74 Aligned_cols=126 Identities=22% Similarity=0.213 Sum_probs=92.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|.+|+|||||+|+|++...... ...++.|.........+ .+..+.+|||||+.... +.....+...
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~ 347 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQ 347 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHH
Confidence 3446899999999999999999998754222 22345666555555555 67789999999987421 1234455555
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+.++++..+..+++.+... ..|+++|+||+|....
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence 55667788999999999878888887777777542 2599999999998654
No 59
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.69 E-value=1.3e-15 Score=102.17 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||++.+++...........+.+.......... ....+.++|+||... +......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~-----------~~~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQER-----------FRSITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChHH-----------HHHHHHH
Confidence 3789999999999999999998775443222222222211112111 235678999999853 3334445
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
...++|++++|+++.+.-+... ..++..+..... ...|+++++||+|..
T Consensus 69 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YYRGAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 6678899999999974322222 233333433321 125999999999986
No 60
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.69 E-value=1.6e-15 Score=102.72 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||+|++++...........+............ ....+.+||+||... +......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQER-----------YRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchHH-----------HHHHHHH
Confidence 5899999999999999999998775432222222111111112211 234678999999753 2223334
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+++.-+... ..+++.+...... ..|++++.||+|....
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~~ 121 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLESK 121 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 5667899999999973322222 3344444443322 2489999999997743
No 61
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=8.1e-16 Score=105.30 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=73.1
Q ss_pred EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccC
Q 046239 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKG 102 (170)
Q Consensus 24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
++|++|+|||||+|+|++.... . ....+.|.........+ . +..+.++||||+.+.....+....++. ....
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence 5899999999999999997641 1 11223444444444444 5 788999999998642211111222222 2334
Q ss_pred CccEEEEEEeCCCCC-----CHH-H-HHHHHHHHHHhcc-----cccceEEEEEEcCCCCCC
Q 046239 103 GIHAVLVVFSARNRF-----SQE-E-EAAVHRLPTLFGK-----KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 103 ~~~~il~v~~~~~~~-----~~~-~-~~~~~~l~~~~~~-----~~~~~~ivv~tk~D~~~~ 152 (170)
.+|++++|+|+.+.. ... + ..+...+...... ....|+++|+||+|....
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 579999999997442 222 2 2233333322111 123699999999998766
No 62
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=1.7e-15 Score=102.53 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++++++......... ..+.........+ .+ ..+.++|+||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKS--TIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 3789999999999999999998764222111 2222222233333 23 4678999999753 22333
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|+.+..+... ..++..+...... ..|++++.||+|....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~ 120 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccc
Confidence 345677899999999974433332 2233333333222 3599999999998753
No 63
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.68 E-value=2.1e-15 Score=102.42 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++++++........ +..+.......... .+ ..+.++|+||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSK--STIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 579999999999999999999776422211 12222222233333 22 3678999999753 22223
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......++++++|+|+.+..+..+ ..++..+.+.... ..|+++|.||+|+...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 344567899999999974333322 2333434333222 2489999999998654
No 64
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.68 E-value=1.9e-15 Score=102.96 Aligned_cols=119 Identities=16% Similarity=0.113 Sum_probs=73.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..+|+++|++|+|||||++.+++.........+.+. ......+.+.. ...+.++||||...+ ....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~--~~~~~~~~~~~~~~~l~l~D~~g~~~~-----------~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGI--DFKIRTIELDGKKIKLQIWDTAGQERF-----------RTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccc--eEEEEEEEECCEEEEEEEEeCCchHHH-----------HHHH
Confidence 368999999999999999999976542221222221 12222233311 246789999997532 2222
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|++++.+... ..++..+...... ..|+++|.||+|+.+.
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEEK 123 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence 345578899999999974433222 2333333332212 2489999999998754
No 65
>CHL00071 tufA elongation factor Tu
Probab=99.67 E-value=5.9e-16 Score=119.21 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
.+.++..+|+++|.+++|||||+++|++..... ......+.|.......+.+ .+..+.++||||+
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh 85 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGH 85 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCCh
Confidence 356777999999999999999999999752211 1112245555544444444 5678899999997
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
.+ +..........+|++++|+|+.+++..++.+.+..+... + .| +++++||+|+.+.
T Consensus 86 ~~-----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g----~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 86 AD-----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-G----VPNIVVFLNKEDQVDD 143 (409)
T ss_pred HH-----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEEccCCCCH
Confidence 52 333333445678999999999888888887777766553 1 25 7889999999864
No 66
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.67 E-value=3.2e-15 Score=101.69 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=71.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++...........+.. ......... ....+.+|||||... +.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE--FGTRIIEVNGQKIKLQIWDTAGQER-----------FRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCccccee--EEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 579999999999999999999765322211111111 111122221 123578999999753 233334
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+++++++|+|++++.+... ..+++.+..... ...|+++|.||+|+...
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc
Confidence 45678899999999975432222 233333333221 22589999999998654
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.67 E-value=2.2e-15 Score=103.01 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++........... ........+.+. ....+.+|||||..++. .....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 70 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI--GVDFRERTVEIDGERIKVQLWDTAGQERFR----------KSMVQ 70 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccce--eEEEEEEEEEECCeEEEEEEEeCCChHHHH----------HhhHH
Confidence 589999999999999999998765432211111 111222223331 12468899999976421 11233
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|+|++++-+.... .+++.+..... ....|+++|.||+|+...
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ 124 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh
Confidence 456788999999999754433332 33333443321 123599999999997654
No 68
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.67 E-value=2e-15 Score=108.33 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccc--c--------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKA--S--------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
+|+++|+.|+|||||+++|+....... + ....+.+.......+.+ .+..+.++||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 489999999999999999975321100 0 11223344445556666 7789999999999863
Q ss_pred CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
..........+|++++|+++.++.......+++.+... . .|+++++||+|....+
T Consensus 78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~--~P~iivvNK~D~~~a~ 132 (237)
T cd04168 78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL---N--IPTIIFVNKIDRAGAD 132 (237)
T ss_pred ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECccccCCC
Confidence 11222344566999999999878777666666666543 2 4899999999988653
No 69
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.67 E-value=2.1e-15 Score=106.33 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccc-----------------------------cCCCCceeEEEeeEEEEeeCCceE
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTITCEMKTTVLKDGQVV 71 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 71 (170)
+|+++|++|+|||||+++|++...... .....+.|.......+.+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 589999999999999999975432111 011134555555555555 67889
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 72 NVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.++||||+.++ ...+ ......+|++++|+|+.++....+...+..+.. .+ .+++++|+||+|+..
T Consensus 80 ~liDTpG~~~~-------~~~~----~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~---~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQY-------TRNM----VTGASTADLAILLVDARKGVLEQTRRHSYILSL-LG---IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHHH-------HHHH----HHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cC---CCcEEEEEEchhccc
Confidence 99999998531 1122 234567899999999987766655554444433 22 136788999999875
Q ss_pred C
Q 046239 152 D 152 (170)
Q Consensus 152 ~ 152 (170)
.
T Consensus 145 ~ 145 (208)
T cd04166 145 Y 145 (208)
T ss_pred C
Confidence 4
No 70
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.67 E-value=2.9e-15 Score=101.88 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++.........+ .+........... ....+.++||||... +.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYIST--IGVDFKIRTIELDGKTIKLQIWDTAGQER-----------FRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--cceeEEEEEEEECCEEEEEEEEECCCcHh-----------HHHHHH
Confidence 57999999999999999999976542221111 1222222223321 123678999999753 223333
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+++.-+... ..+++.+...... ..|+++|.||+|....
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDK 122 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccc
Confidence 45678899999999974322222 2333333333212 2489999999997654
No 71
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=2.6e-15 Score=116.77 Aligned_cols=125 Identities=25% Similarity=0.281 Sum_probs=81.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+.+|+++|++|+|||||+|+|++....... ..++.|.......+.+ .+..+.++||||+.++.. .....-..
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~~---~ie~~gi~ 286 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETDD---EVEKIGIE 286 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCcc---HHHHHHHH
Confidence 345689999999999999999999987542221 1233444444444555 677899999999975321 11111111
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|++++.+..+...+.. . ...|+++|+||+|+...
T Consensus 287 ~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~---~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 287 RSREAIEEADLVLLVLDASEPLTEEDDEILEE----L---KDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----c---CCCCcEEEEEhhhcccc
Confidence 12234567899999999986666555444332 1 12599999999998754
No 72
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.67 E-value=1.9e-15 Score=110.60 Aligned_cols=129 Identities=20% Similarity=0.307 Sum_probs=77.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEee-C--CceEEEEeCCCCCCCCCCchHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLK-D--GQVVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~l~DtpG~~~~~~~~~~~ 89 (170)
.++|+|+|.+|+|||||||+|++......... ....+........... . ...+.++||||+++.......+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 46899999999999999999998764433210 1111222222222221 1 2468899999999754433221
Q ss_pred -------HHHHHHHHH---------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 90 -------GKEIVKCIG---------LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 90 -------~~~~~~~~~---------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..++..++. ....++|++||+++++ +++.+.|.+.++.|.+.. ++|-|+.|+|.+..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~v------NvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRV------NVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS------EEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccc------cEEeEEecccccCH
Confidence 112222221 1235789999999985 678888988888887763 99999999999987
Q ss_pred C
Q 046239 153 N 153 (170)
Q Consensus 153 ~ 153 (170)
.
T Consensus 158 ~ 158 (281)
T PF00735_consen 158 E 158 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>PRK11058 GTPase HflX; Provisional
Probab=99.67 E-value=4.4e-15 Score=114.46 Aligned_cols=127 Identities=21% Similarity=0.119 Sum_probs=80.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
-+.|+++|.+|+|||||+|+|++...... ..++.|.........++....+.++||||+... .+......+... .
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~t-l 271 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKAT-L 271 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHH-H
Confidence 36899999999999999999998765321 122233333334444533448899999999542 112222333332 2
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|++++....+... .+++.+.... ..|+++|+||+|+...
T Consensus 272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~--~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAH--EIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccC--CCCEEEEEEcccCCCc
Confidence 34578899999999986544444332 3334443222 2599999999998754
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.67 E-value=4.1e-15 Score=100.35 Aligned_cols=118 Identities=16% Similarity=0.097 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++++++.......... .+........... ....+.++|+||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHEST--TQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCc--cceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 37899999999999999999987653221111 1111112222221 223688999999653 222233
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+++..+... ..+++.+...... ..|+++|+||+|....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~ 120 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ 120 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 34567899999999874433222 2334444444333 3599999999998754
No 75
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.66 E-value=9.6e-15 Score=99.71 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=78.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+..+|+++|.+|+|||||++.++....... . .|.......... ....+.+|||||... +...+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 70 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-I----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW 70 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc-c----CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 457899999999999999999986443211 1 121222223333 567899999999863 33334
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC-ChhhHHHHh
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED-NEKTLEDYL 161 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~-~~~~~~~~~ 161 (170)
..++.++|++++|+|+++..+.. ...+++.+.+... ...|+++|.||+|+.+. ....+++++
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 135 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRID--EARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKL 135 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHH--HHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHc
Confidence 45667889999999997432222 2233444443221 22599999999998643 123455544
No 76
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.66 E-value=7.3e-15 Score=100.19 Aligned_cols=113 Identities=17% Similarity=0.114 Sum_probs=73.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
.|+++|++|+|||||++.+++.... ....+.+ .....+.+ .+..+.++|+||... +...+..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~-~~~~t~g----~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK-KVAPTVG----FTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc-cccCccc----ceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 4789999999999999999986321 1111112 22233444 577899999999753 33444556
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
+.++|++++|+|+++..+..+ ...++...+.. ....|+++|.||.|+.+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HcCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 788899999999974422222 22333333322 123599999999998765
No 77
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.66 E-value=9.7e-15 Score=97.72 Aligned_cols=120 Identities=26% Similarity=0.223 Sum_probs=76.6
Q ss_pred EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCC
Q 046239 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGG 103 (170)
Q Consensus 24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
++|++|+|||||+|+|++......+ ...+.+.........+.....+.++||||+.++......... .+......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence 5899999999999999987554221 122233333333333322678999999999876443332212 22234466
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 104 IHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+|++++|+++................. ...|+++|+||+|+....
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCChh
Confidence 799999999986655555442222222 125999999999998763
No 78
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=4.3e-15 Score=101.61 Aligned_cols=119 Identities=19% Similarity=0.132 Sum_probs=74.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...+..+++++|++|+|||||++.+++...... ..+.........+ .+..+.++|+||... +.
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~ 72 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IR 72 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HH
Confidence 344578999999999999999999998643211 1111122233444 567889999999753 23
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
..+.....+++++++|+|+.+.-+.. ....++...+.. ....|+++++||+|..+.
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLE--EAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 33344557889999999987321111 112222222211 112599999999998765
No 79
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=1.4e-14 Score=101.51 Aligned_cols=124 Identities=21% Similarity=0.158 Sum_probs=74.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH-
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK- 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~- 95 (170)
....+|+++|++|+|||||+|+|++.... .+ ..++.|.. ...+.+ . .+.+|||||+.............+..
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~--~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRK--PNHYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeC--ceEEee-c--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 34578999999999999999999987632 21 12233332 223333 2 68999999986433322222222322
Q ss_pred ---HHHhccCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 ---CIGLAKGGIHAVLVVFSARNRFS-----------QEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ---~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
++......++++++|+|...... ..+..++..+... ..|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECccccCc
Confidence 22223456688999999853211 1223333333321 2599999999998755
No 80
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.66 E-value=2.5e-15 Score=105.58 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCCceeEEEeeEEEEee--------------------------------C
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTITCEMKTTVLK--------------------------------D 67 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------~ 67 (170)
+|+++|++|+|||||+.+|++... ...+....+.+.........+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 689999999999999999988732 2222222233333332222220 1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEEEEEEc
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-FSQEEEAAVHRLPTLFGKKIFDYMIVVFTG 146 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk 146 (170)
...+.++||||+.+ +...+......+|++++|+|+.++ ........+..+... + ..|+++|+||
T Consensus 82 ~~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~---~~~iiivvNK 146 (203)
T cd01888 82 VRHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G---LKHIIIVQNK 146 (203)
T ss_pred ccEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C---CCcEEEEEEc
Confidence 26789999999742 333444455678999999999853 334444444444332 1 1479999999
Q ss_pred CCCCCC
Q 046239 147 GDYLED 152 (170)
Q Consensus 147 ~D~~~~ 152 (170)
+|+...
T Consensus 147 ~Dl~~~ 152 (203)
T cd01888 147 IDLVKE 152 (203)
T ss_pred hhccCH
Confidence 998764
No 81
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.66 E-value=3.4e-15 Score=101.53 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|.+|+|||||++++++...........+.+ ......... ....+.++||||...+. .....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSK-NICTLQITDTTGSHQFP-----------AMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECC-EEEEEEEEECCCCCcch-----------HHHHH
Confidence 579999999999999999999765422212221111 111111111 23467899999997531 12223
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK-IFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~ 151 (170)
....++++++|+++++..+... ..+++.+.+..+.. ...|+++|.||+|+..
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 4567899999999975444332 34555566554321 2359999999999865
No 82
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.66 E-value=3.5e-15 Score=100.40 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=73.0
Q ss_pred EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCC
Q 046239 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGG 103 (170)
Q Consensus 24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
|+|.+|+|||||+|++++...... ...+.|.......+.+ .+..+.++||||+.++..... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999998753222 2234444444455555 567899999999986543221 11111111111 58
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 104 IHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 104 ~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+|++++|+|+.+. .. ....+..+.+. ..|+++|+||+|+.+.
T Consensus 75 ~d~vi~v~d~~~~-~~-~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 75 PDLIVNVVDATNL-ER-NLYLTLQLLEL-----GLPVVVALNMIDEAEK 116 (158)
T ss_pred CcEEEEEeeCCcc-hh-HHHHHHHHHHc-----CCCEEEEEehhhhccc
Confidence 8999999999742 22 22333333321 2599999999998765
No 83
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.66 E-value=4.7e-15 Score=100.25 Aligned_cols=117 Identities=20% Similarity=0.132 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+++++|++|+|||||++++++...........+.+ .......+. ....+.++||||...+ .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD--FKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce--EEEEEEEECCEEEEEEEEECCCchhh-----------hhhhH
Confidence 378999999999999999999875433222222222 122222221 2346889999997542 22223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.....+|++++|+|+++..+... ..++..+..... ....|+++|.||+|+.
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 44567899999999874433332 223444444322 2235899999999987
No 84
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.65 E-value=1e-14 Score=100.15 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+|+++|++|+|||||++.+++...... ..|.........+ ....+.++|+||... +...+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 76 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSW 76 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHH
Confidence 357899999999999999999987543221 1222223334444 567899999999864 23333
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
.....++|++++|+|+++..+.. ...+++.+.+... ...|+++++||+|+...
T Consensus 77 ~~~~~~~d~vi~V~D~s~~~~~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLP--LTKEELYKMLAHEDLRKAVLLVLANKQDLKGA 131 (174)
T ss_pred HHHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECCCCCCC
Confidence 34557889999999997432221 1122333332211 22599999999998653
No 85
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=6.5e-15 Score=101.99 Aligned_cols=126 Identities=11% Similarity=0.039 Sum_probs=78.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|++|+|||||++.+.+...... ..|.........+ .+..+.++|+||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 5568999999999999999999998643211 1111122233334 567889999999863 2333
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL 161 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~ 161 (170)
+..+...+|++++|+|+.+.-+. ....+++.+.+.. ....|+++|+||+|..... .+.+++.+
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l 143 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYAL 143 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHc
Confidence 44566789999999999743111 1122233333221 1235999999999986442 23455444
No 86
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.65 E-value=7.7e-15 Score=102.84 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|++|+|||||++.+.+.........+.+ .......+.... ...+.+|||||...+ ...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----------~~~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG--VDFKIRTVEINGERVKLQIWDTAGQERF-----------RTI 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCcccc--ceeEEEEEEECCEEEEEEEEeCCCchhH-----------HHH
Confidence 357899999999999999999997654222111111 112222333311 246789999997642 222
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......++++++|+|++++-+..+ ..+++.+.... ...|+++|.||+|+...
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPER 125 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence 3345677899999999974432222 23333333322 22489999999998754
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.65 E-value=1e-14 Score=100.24 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=74.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+|+++|.+|+|||||++.+....... ...|.........+ ....+.++||||... +...+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~ 74 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT-----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLW 74 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHH
Confidence 35889999999999999999996433211 11222233333444 567899999999864 33344
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
..+..+++++++|+|++++.+.. ...+++.+.+... ...|+++|.||+|+.+.
T Consensus 75 ~~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred HHHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 45678899999999997432222 2233333333221 12489999999998654
No 88
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=9.7e-15 Score=101.44 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=80.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+++++|++|+|||||++.+++...... . .|.......+.+ .+..+.++|+||... +..
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-~----~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~ 78 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-V----PTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARR 78 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCccc-C----CccCcceEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence 45568899999999999999999998654211 1 122222334444 567889999999753 223
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC-ChhhHHHHhh
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED-NEKTLEDYLG 162 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~-~~~~~~~~~~ 162 (170)
.+..+...++++++|+|..+.-+.. ....++.+.+.. ....|++++.||+|+... ..+.+++++.
T Consensus 79 ~~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~ 146 (190)
T cd00879 79 LWKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALG 146 (190)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence 3344567889999999987431111 122334333321 123599999999998643 2245555543
No 89
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.65 E-value=7.4e-15 Score=98.53 Aligned_cols=113 Identities=22% Similarity=0.205 Sum_probs=71.5
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK 101 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
|+++|++|+|||||+|+|++......... |.......... ....+.++|+||... +...+..+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP----TVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC----CCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 78999999999999999998764322221 22222233334 457789999999864 233344456
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 102 GGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
..+|++++|+|+.+..+. .....++.+.... ....|+++|+||+|....
T Consensus 66 ~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 66 RGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred hcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 778999999998732111 1122233332221 122489999999998765
No 90
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=5.7e-15 Score=100.44 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=72.4
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK 101 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
|+++|.+|+|||||++.+++.........+.+ ........ ....+.+|||||...+ ...+....
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g----~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG----FNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCC----cceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 78999999999999999997643222111111 12223333 5678999999998752 22333456
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 102 GGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 102 ~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.++|++++|+|.++..+... ...++.+........|+++|.||.|+...
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 77899999999874432221 22334443322233599999999998765
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=8.2e-15 Score=100.00 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++++.+...........+.+ .......+ .+ ..+.++|+||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE--EEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHH
Confidence 378999999999999999999865422211121111 11122233 22 3466899999753 22333
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGK--KIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (170)
.....+++++++++|++++.+.... .+.+.+...... ....|+++|.||+|...
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 4456788999999999744332221 222222222221 11359999999999984
No 92
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=8.9e-15 Score=102.65 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++.+++.........+ .........+.+. ....+.+|||||... +....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t--~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKAT--IGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--eeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhhH
Confidence 36899999999999999999976532221111 1111122223331 234678999999864 22333
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEEcCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG--KKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~ 150 (170)
..++.+++++++|+|++++.+... ..+...+..... .....|+++|.||+|+.
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 456678899999999974433332 223344443321 11234999999999986
No 93
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.65 E-value=4.8e-15 Score=101.93 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccc------ccC-------CCCceeEEEeeEEEEe----eCCceEEEEeCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFK------ASA-------GSSGVTITCEMKTTVL----KDGQVVNVIDTPGLFDS 82 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~------~~~-------~~~~~t~~~~~~~~~~----~~~~~~~l~DtpG~~~~ 82 (170)
++|+++|.+|+|||||++++++..... ... ...+.+.........+ .....+.+|||||+.++
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 468999999999999999998742100 000 0112222222111211 13456789999999753
Q ss_pred CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+...+|++++|+|+.+..+..+...+..+.. .. .|+++|+||+|+...
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA 134 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC
Confidence 2222334557899999999986665555444433322 12 489999999998654
No 94
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.65 E-value=1.6e-14 Score=97.80 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=74.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHHHHh
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKCIGL 99 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~~~~ 99 (170)
|+++|++|+|||||+|+|++...........+.+.... .... ...+.++||||+....... .............
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLIN--FFNV--NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEE--EEEc--cCeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 78999999999999999994322111122223333222 2222 3489999999987643211 1111111111122
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....++++++++.....+......++++... . .|+++++||+|++..
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~---~--~~vi~v~nK~D~~~~ 125 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL---G--IPFLVVLTKADKLKK 125 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc---C--CCEEEEEEchhcCCh
Confidence 33456788899998756566666666666653 1 489999999998755
No 95
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.65 E-value=1.3e-14 Score=100.17 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=77.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.+...+|+++|..|+|||||++.++....... ..|.......+.. ....+.++|+||... +..
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~ 76 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRP 76 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHH
Confidence 35567999999999999999999985433211 1222222333444 567899999999753 344
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
.+..++.++|++++|+|+++..+.. ....++.+.+... ...|+++|.||.|+.+.
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 4555678889999999997432222 2233444443221 23589999999998655
No 96
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=5.4e-15 Score=120.90 Aligned_cols=126 Identities=22% Similarity=0.270 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+|+++|++|+|||||+|+|++...... ....+.|.........+ .+..+.++||||+...... ..+.+.....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~--~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHK--LTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCccc--chhHHHHHHH
Confidence 347999999999999999999998764211 11233443333333444 6778889999998642211 1222222222
Q ss_pred --HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 --GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 --~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|++++.+..+...+..+.+. . .|+++|+||+|+...
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~~~ 576 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA---G--RALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEEchhcCCh
Confidence 1245778999999999888888887766655442 2 599999999998764
No 97
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.65 E-value=4.9e-15 Score=103.25 Aligned_cols=116 Identities=17% Similarity=0.295 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcc---c--cccCCCCceeEEEeeEEEEee-------------CCceEEEEeCCCCCCC
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKA---F--KASAGSSGVTITCEMKTTVLK-------------DGQVVNVIDTPGLFDS 82 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~---~--~~~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~DtpG~~~~ 82 (170)
+|+++|++|+|||||++++++... . .......+.|.........+. .+..+.++||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 689999999999999999997310 0 000111233333333333331 256889999999852
Q ss_pred CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|+.++.+..+...+..... . ..|+++++||+|....
T Consensus 81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L----CKKLIVVLNKIDLIPE 135 (192)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEECcccCCH
Confidence 22222233456799999999986666655444443222 2 2489999999998754
No 98
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.65 E-value=1e-14 Score=98.68 Aligned_cols=116 Identities=22% Similarity=0.182 Sum_probs=71.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee---CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+|+++|.+|+|||||++.+++.........+ ...........+. ....+.+|||||... +....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKT--IGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--EEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 6899999999999999999986542221111 1111112222221 234688999999753 23333
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+++.+.-+... ..++..+.... ...|+++|.||+|+...
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccc
Confidence 445678899999999874322222 22233333222 12499999999998754
No 99
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.65 E-value=1e-14 Score=103.34 Aligned_cols=117 Identities=21% Similarity=0.169 Sum_probs=73.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEe--eEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCE--MKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+|+++|.+|+|||||++.+++....... ..|.... .....+.. ...+.+|||||... +...
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~----~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSY----KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKM 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHH
Confidence 6899999999999999999976532211 1222222 22233312 34678999999753 2233
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+++.-+... ..+++.+.+.... ....|+++|.||+|+...
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 3345678899999999974433332 2345555554432 112378999999998744
No 100
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=6.8e-15 Score=102.13 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++.........+.+ .......+... ....+.+|||||... +.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIG--VDFKIKTVYIENKIIKLQIWDTNGQER-----------FRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCCcHH-----------HHhhHH
Confidence 3689999999999999999997764322122211 22222233331 123567899999753 222334
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|+|++++-+... ..++..+....... .|++++.||+|+...
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN 120 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence 56678999999999974432222 23334444433222 589999999998754
No 101
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.64 E-value=6.4e-15 Score=103.12 Aligned_cols=127 Identities=17% Similarity=0.103 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|.+|+|||||++.+++....... .+..+.........+ .+ ..+.++||||...+... ...+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~--~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEY--IPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCccc--CCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 37899999999999999999976542221 111111111122223 33 45779999998754321 222222222
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-KKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|++++.+... ..+.+.+.+... .....|+++|.||+|+...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 234578899999999975433332 233344444331 0122599999999998654
No 102
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.64 E-value=6.5e-15 Score=99.41 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||+++++....... . .|.........+ .+..+.++||||... +...+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-I----PTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-C----CccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 478999999999999999976543211 1 122222333444 567899999999974 23344456
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
...++++++|+|+++..+... ..+++...+.. ....|+++|+||+|+.+.
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGT--AKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 678999999999874322111 11222222211 123599999999998754
No 103
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.64 E-value=8.5e-15 Score=98.97 Aligned_cols=117 Identities=12% Similarity=0.072 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||++.+++......... .|.......... .+..+.++||||... +...+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 478999999999999999998642211111 111122222333 567889999999874 22333345
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-ccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-KKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~tk~D~~~~ 152 (170)
+..++++++|+|+++..+... ...++.+.+... .....|+++|+||+|+...
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 678899999999975433221 222333322110 0123599999999998754
No 104
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=1.9e-14 Score=101.71 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=76.0
Q ss_pred CCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHH
Q 046239 12 PTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVG 90 (170)
Q Consensus 12 ~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~ 90 (170)
..+......+|+++|++|+|||||++++++...... ... .+.......+.+. ....+.++||||...+
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------- 75 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-APT--IGVDFKIKQLTVGGKRLKLTIWDTAGQERF-------- 75 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCC--ceeEEEEEEEEECCEEEEEEEEECCCchhh--------
Confidence 344455568999999999999999999997654211 111 1122222233331 1246789999998753
Q ss_pred HHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 91 KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+...+|++++|+|.++..+.... ..+.............|+++|.||+|+...
T Consensus 76 ---~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 76 ---RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred ---HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 22223455678999999999744333322 112222222222222488999999998644
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.64 E-value=1.1e-14 Score=99.41 Aligned_cols=113 Identities=19% Similarity=0.129 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|.+|+|||||++++++..... ...|.........+ .+..+.++||||...+ ...+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 47899999999999999999864311 12232233333444 5678999999998742 2233344
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
...+|++++|+|+++.-+.. ....++.+.+... ...|+++|.||+|+...
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 57789999999997432222 2233444443221 12589999999998644
No 106
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.64 E-value=1.5e-14 Score=99.56 Aligned_cols=120 Identities=16% Similarity=0.065 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------CCceEEEEeCCCCCCCCCCch
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------DGQVVNVIDTPGLFDSSAGSE 87 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~l~DtpG~~~~~~~~~ 87 (170)
..+|+++|++|+|||||++.+++.........+.+.. .......+. ....+.+|||||...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------ 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGID--FREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------ 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceE--EEEEEEEEcCccccccccCCCEEEEEEEeCCChHH------
Confidence 3689999999999999999998765422211111111 111112110 235688999999653
Q ss_pred HHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 88 FVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+.........++|++++|+|+++..+..+ ..++..+..... ....|+++|.||+|+...
T Consensus 76 -----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 76 -----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ 135 (180)
T ss_pred -----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc
Confidence 33344456678899999999974333332 233333333211 112489999999998654
No 107
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.64 E-value=7.8e-15 Score=98.91 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|.+|+|||||++++++.... ... .+.........+ ....+.+||+||...+ .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~~----~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TTI----PTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CCC----CCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 4899999999999999999987631 111 122222333444 5678999999998752 2233345
Q ss_pred cCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+|++++|+|+.+.-+... ...+..+..... ....|++++.||+|....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence 567799999999974311111 122222222111 123599999999998765
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=2.1e-14 Score=99.23 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|++|+|||||++.+........ . .|.......... .+..+.++||||... +...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-~----~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTT-I----PTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcccc-C----CccccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 3457899999999999999999965433211 1 122222333444 567899999999863 3334
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
+..+..++|++++|+|+++.-+.. ...+++.+.+... ...|+++|.||.|+.+.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 445677899999999997432211 1223344433221 23589999999997654
No 109
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=5e-15 Score=100.29 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=90.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..-.++|+|+|.+|+|||.|+..+++.........+.+..........+- ....+.+|||.|... ++.
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~g-k~iKlQIWDTAGQER-----------Frt 73 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDG-KTIKLQIWDTAGQER-----------FRT 73 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecc-eEEEEEeeeccccHH-----------Hhh
Confidence 34457899999999999999999998876655555555555544444432 445789999999974 456
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+++++|++|+|+|+++.-+... .+++.++.......+ |.++|.||+|+.+.
T Consensus 74 it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 74 ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK 129 (205)
T ss_pred hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh
Confidence 66678899999999999985444333 355666666655443 89999999998765
No 110
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.64 E-value=1.5e-14 Score=105.44 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccc--cC------------------CCCceeEEEeeEEEEeeCCceEEEEeCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--SA------------------GSSGVTITCEMKTTVLKDGQVVNVIDTPG 78 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 78 (170)
.++|+++|+.|+|||||+++|+....... +. ...+.+.......+.+ .+..+.++||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCC
Confidence 36899999999999999999974321100 00 0112333344456666 788999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+.++. .+. ......+|++++|+++..+.......+++..... + .|+++++||+|....+
T Consensus 81 ~~df~-------~~~----~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~---~--~P~iivvNK~D~~~a~ 139 (267)
T cd04169 81 HEDFS-------EDT----YRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR---G--IPIITFINKLDREGRD 139 (267)
T ss_pred chHHH-------HHH----HHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc---C--CCEEEEEECCccCCCC
Confidence 97531 112 2234567999999999877666555555444331 2 4899999999987663
No 111
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.64 E-value=1.8e-14 Score=114.85 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=87.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....++++++|..++|||||+++|.+....... ..+.|.......+.+..+..+.+|||||+.+|. .
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e--~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-----------~ 150 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGE--AGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-----------S 150 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--CCceeecceEEEEEECCCcEEEEEECCCCcchh-----------h
Confidence 345689999999999999999999986543322 224555555555555233489999999998642 2
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHh
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~ 161 (170)
+.......+|++++|++++++...+..+.+..+... . .|+++++||+|+...+.+.+.+.+
T Consensus 151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L 211 (587)
T TIGR00487 151 MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQEL 211 (587)
T ss_pred HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHH
Confidence 222455778999999999877766666555543322 2 489999999998765333444443
No 112
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=1e-14 Score=101.54 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccC-CCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||++.+++........ .+.+.+.... ...+. ....+.||||||... +.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNK--VVTVDGVKVKLQIWDTAGQER-----------FRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEE--EEEECCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence 68999999999999999998765422111 1111111111 12220 124678999999753 222333
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+++..+..+ ..++..+.+..... .|+++|.||+|+...
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~ 121 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGE 121 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhc
Confidence 45677899999999974433222 33445555543222 499999999998643
No 113
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.64 E-value=1.1e-14 Score=98.34 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||++.+++...... . .|...............+.++||||... +...+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 478999999999999999998764321 1 1211222233332456899999999863 22333345
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
...+|++++|+|+.+..+.. ....++.+.+... ...|+++|.||+|....
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLD--ESQKELKHILKNEHIKGVPVVLLANKQDLPGA 116 (160)
T ss_pred hccCCEEEEEEECCcHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECcccccC
Confidence 66789999999997443222 1222333332211 23599999999998643
No 114
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=1.8e-14 Score=97.52 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|.+|+|||||++.+........ . .|.......+.. ....+.+|||||... +...+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~~-~----pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccc-C----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 689999999999999999965433211 1 111122223333 567899999999863 33344456
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
+.++|++++|+|+++..+..+ ..+++.+.+... ...|++++.||+|+.+.
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 788999999999974322221 223333333211 12599999999998654
No 115
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=9.9e-15 Score=99.40 Aligned_cols=119 Identities=16% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+++++|++|+|||||++.+++......... ..+.......+.+ .+ ..+.++|+||... +..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~ 71 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA--TIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS 71 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 457899999999999999999986543222111 1111222222333 33 3577899999764 222
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+|+.+..+... ..++..+....... .|+++|.||+|+...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~ 127 (169)
T cd04114 72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER 127 (169)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence 22345677899999999874432221 23344444433323 488999999998654
No 116
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=2.4e-14 Score=102.55 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=58.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+++++|++|+|||||+|+|+|...... .....|..+......+ .+..+.++||||+.+..........++. ..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~l----~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQVI----AV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHHH----Hh
Confidence 689999999999999999999764221 1223333333444445 6788999999998764322222222332 34
Q ss_pred cCCccEEEEEEeCCC
Q 046239 101 KGGIHAVLVVFSARN 115 (170)
Q Consensus 101 ~~~~~~il~v~~~~~ 115 (170)
..++|++++|+|+.+
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 567899999999863
No 117
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.63 E-value=1.2e-14 Score=102.08 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe---eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+.|+++|++|+|||||++.|++...... ..+.+ ........ ..+..+.++|+||+..+ ...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t---~~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~-----------~~~ 64 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRST---VTSIE--PNVATFILNSEGKGKKFRLVDVPGHPKL-----------RDK 64 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCc---cCcEe--ecceEEEeecCCCCceEEEEECCCCHHH-----------HHH
Confidence 3689999999999999999997643221 11111 11111111 13567999999999742 222
Q ss_pred HHhccCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCCCh-hhHHHHhh
Q 046239 97 IGLAKGGI-HAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLEDNE-KTLEDYLG 162 (170)
Q Consensus 97 ~~~~~~~~-~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~~~-~~~~~~~~ 162 (170)
+...+... +++++|+|+.+.. .......+++.+.+.. ....|++++.||+|+..... +.+++.++
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le 135 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLE 135 (203)
T ss_pred HHHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHH
Confidence 22334455 9999999997432 2222333333332211 12359999999999876532 33444443
No 118
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.63 E-value=1e-14 Score=98.84 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc-ccccc-CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRK-AFKAS-AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~-~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||++++.... .+... ....+.................+.+|||||... +..+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHHHHH
Confidence 68999999999999999998531 12111 111111111111111111346788999999742 223334
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+++..+... ..+++.+.+.. ...|+++|.||+|+...
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK 122 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence 45678899999999974422222 23333333321 22599999999998654
No 119
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.63 E-value=9.5e-15 Score=102.45 Aligned_cols=116 Identities=16% Similarity=0.216 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.|+++|..|+|||||++.++..........+ .+.......+.+ .+ ..+.+|||+|... +..++.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~T--i~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSG--VGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCc--ceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 5889999999999999999865432211111 112222233343 33 5678999999874 334445
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.++.++|++++|+|++++-+... ..+++.+.+..... .|+++|.||+|+...
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~ 120 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD 120 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence 56788999999999985544443 23344444432222 599999999997644
No 120
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=9.6e-15 Score=98.81 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|.+|+|||||++.+++.........+ +.......... .+ ..+.+|||||...+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPT---IEDSYRKQIEV-DGQQCMLEILDTAGTEQFT-----------AMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCc---hhhhEEEEEEE-CCEEEEEEEEECCCccccc-----------hHH
Confidence 58999999999999999999875432211111 11111112222 22 356789999987532 222
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+++++.-+..+ ..+++.+.+... ....|+++|.||+|+...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE 121 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 334567899999999974433222 233444444322 123599999999997653
No 121
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.63 E-value=4.4e-14 Score=100.95 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccc--ccCCCCceeEE---------E----------------------------
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTIT---------C---------------------------- 58 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~--~~~~~~~~t~~---------~---------------------------- 58 (170)
.-+.++++|++|+||||++++|+|..... .+..+.-.+.- .
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 44689999999999999999999974211 11111000000 0
Q ss_pred ----------eeEEEEeeCCceEEEEeCCCCCCCC--CCchHHHHHHHHHHHhccCC-ccEEEEEEeCCCCCCHHH-HHH
Q 046239 59 ----------EMKTTVLKDGQVVNVIDTPGLFDSS--AGSEFVGKEIVKCIGLAKGG-IHAVLVVFSARNRFSQEE-EAA 124 (170)
Q Consensus 59 ----------~~~~~~~~~~~~~~l~DtpG~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~il~v~~~~~~~~~~~-~~~ 124 (170)
-.-.+..+....+.++||||+.... .........+..+...+..+ .+++++|+++...+...+ .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0011112233679999999997432 11233445555655555553 458899999876677666 455
Q ss_pred HHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhhc
Q 046239 125 VHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGHE 164 (170)
Q Consensus 125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~ 164 (170)
.+++... ..++++|+||+|.++.. .++.+.++++
T Consensus 185 a~~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~~~ 218 (240)
T smart00053 185 AKEVDPQ-----GERTIGVITKLDLMDEG-TDARDILENK 218 (240)
T ss_pred HHHHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHhCC
Confidence 5555443 25999999999998764 2366666653
No 122
>PLN03110 Rab GTPase; Provisional
Probab=99.63 E-value=2.4e-14 Score=101.55 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|++|+|||||++.+++.........+.+. ......+.+. ....+.+|||||... +...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~--~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~~ 77 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGV--EFATRTLQVEGKTVKAQIWDTAGQER-----------YRAI 77 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeE--EEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence 4478999999999999999999986643222222111 1222223331 124788999999753 3334
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...++++++|+|+++..+... ..+++.+.+..... .|+++|.||+|+...
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc
Confidence 4456678899999999974433332 23444444433222 489999999997543
No 123
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=8.7e-15 Score=99.62 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCC-CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS-SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+++++|.+|+|||||++.+.+.......... ...+.. ..+.. ....+.+|||||..... ..+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIP---ADVTP-ERVPTTIVDTSSRPQDR-----------ANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEee---eeecC-CeEEEEEEeCCCchhhh-----------HHHhh
Confidence 6899999999999999999876543221111 111111 11111 34578899999987421 11222
Q ss_pred ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|++++++.+... ..+++.+.... . ..|+++|.||+|+...
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDG 118 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcccc
Confidence 3467899999999874433333 23444454432 2 3599999999998765
No 124
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=8.7e-15 Score=107.04 Aligned_cols=115 Identities=23% Similarity=0.237 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccc--cCC--------------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKA--SAG--------------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~--~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
+|+++|++|+|||||+++|++...... +.. ..+.+.........+ .+..+.++||||+.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHHH--
Confidence 489999999999999999975321110 000 012223333445555 6778999999999742
Q ss_pred CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..........+|++++|+++..+........++.+... + .|.++++||+|....
T Consensus 78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~---~--~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA---G--IPRIIFINKMDRERA 131 (268)
T ss_pred ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCccCCC
Confidence 22222344567999999999877666666666655442 2 489999999998866
No 125
>PRK12736 elongation factor Tu; Reviewed
Probab=99.63 E-value=2.9e-15 Score=114.88 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=83.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
.++..+|+++|..++|||||+++|++..... ......+.|.......+.. .+..+.++||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 5667899999999999999999998742111 0112345555544444433 567889999999753
Q ss_pred CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|+.++....+.+.+..+... +. .++++++||+|+.+.
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~---g~-~~~IvviNK~D~~~~ 143 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV---GV-PYLVVFLNKVDLVDD 143 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc---CC-CEEEEEEEecCCcch
Confidence 222223344678999999999877878877777766553 21 247889999998754
No 126
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.63 E-value=6.8e-16 Score=99.41 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccc--ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+|+|+.|+|||||+++|++..... ......+.+.......... ....+.++|++|...+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~----------- 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQ----------- 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSH-----------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccccc-----------
Confidence 68999999999999999999877641 1111222222222222211 233478999999965211111
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
....++|++++|+|+++..+... .+++.++..........|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 11345699999999984433333 334555555543223359999999998
No 127
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=6.8e-15 Score=100.23 Aligned_cols=114 Identities=18% Similarity=0.149 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+|+++|++|+|||||++.++......... .|.........+ .....+.+|||||...+.. ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence 78999999999999999998544321111 222222222111 1235688999999875321 11
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|.++..+... ..+++.+..... ..|+++|.||+|+...
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR 119 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence 124567899999999974433322 234444544332 3599999999998744
No 128
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.63 E-value=1.9e-14 Score=97.45 Aligned_cols=118 Identities=21% Similarity=0.163 Sum_probs=71.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|++|+|||||++++++........... .......... .+ ..+.++||||..++ ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI---EDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc---cceEEEEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence 4689999999999999999998765322111111 1111111222 23 35778999998753 122
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+++++.-+... ..++..+...... ...|++++.||+|+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCcccccc
Confidence 2234466799999999974332222 2333334333211 12499999999998654
No 129
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=1.6e-14 Score=102.59 Aligned_cols=119 Identities=13% Similarity=0.024 Sum_probs=75.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....+|+++|.+|+|||||++.++..........+.+.+.. ...+... ....+.+|||+|...+ ..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKF-----------GG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhh-----------hh
Confidence 56689999999999999999987755432221222222211 1122221 2357889999998753 23
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....++.+++++++|+|.+++.+... ..+++.+.+.. . ..|+++|.||+|+..
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~ 131 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E--NIPIVLCGNKVDVKN 131 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-C--CCcEEEEEEchhhhh
Confidence 33345678899999999985543332 23444444432 2 249999999999753
No 130
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.62 E-value=1.5e-14 Score=97.58 Aligned_cols=117 Identities=20% Similarity=0.175 Sum_probs=70.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++++++...........+ ......... .+ ..+.+|||||...+ ....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch---heEEEEEEE-CCEEEEEEEEECCCCcch-----------HHHH
Confidence 5799999999999999999997653222111111 111122222 22 34678999998642 2233
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...++++++|+++++.-+..+ ..++..+.+... ....|+++|.||+|+...
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 345567899999999874332222 223344444321 123599999999998753
No 131
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=2e-14 Score=99.45 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=72.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|.+|+|||||++.+++...... ..+.+.+. ....... ..+..+.+|||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce--eEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 46899999999999999999987653221 11111111 1111111 1345789999999753 2333
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..+...+|++++|+|+++.-+..+ ...+..+..... ....|+++|+||+|+...
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~ 124 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA 124 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc
Confidence 4445678899999999874322221 122233333221 123599999999998643
No 132
>PRK12735 elongation factor Tu; Reviewed
Probab=99.62 E-value=6.2e-15 Score=113.19 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=82.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (170)
..++..+|+++|..++|||||+++|++..... ......+.|.......+.. .+..+.++||||+.
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~ 86 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH
Confidence 44677899999999999999999998621100 1112345555544444444 56688999999985
Q ss_pred CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
+ +..........+|++++|+++.++...+..+.+..+... + .| +++++||+|+.+.
T Consensus 87 ~-----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 87 D-----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD 143 (396)
T ss_pred H-----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEecCCcch
Confidence 2 333333455688999999999877777776666655442 2 25 4568999998753
No 133
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=1.3e-14 Score=112.54 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
+..++..+|+++|..++|||||+++|++..... ......+.|.......+.. .+..+.++||||+
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh 134 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGH 134 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCc
Confidence 446778899999999999999999998431100 0122245666555555544 5678899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
.+ ....+. .....+|++++|+|+.++...++.+.+..+...- .| +++++||+|+++.
T Consensus 135 ~~-------f~~~~~----~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv~~ 192 (447)
T PLN03127 135 AD-------YVKNMI----TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----VPSLVVFLNKVDVVDD 192 (447)
T ss_pred cc-------hHHHHH----HHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEEEeeccCCH
Confidence 74 222222 2334689999999998788888877777766542 25 6789999998864
No 134
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.62 E-value=2.5e-14 Score=116.77 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=86.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....++|+++|..++|||||+++|.+....... ..+.|.....+.+.+ .+..+.||||||+.+|. .
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~ 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------A 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------h
Confidence 456789999999999999999999876543221 234555555566666 57789999999998752 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+.......+|++++|++++++...+....+...... . .|+++++||+|+...
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a 404 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGA 404 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECcccccc
Confidence 222345667999999999877777766666544432 2 489999999998765
No 135
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.62 E-value=2.5e-14 Score=105.61 Aligned_cols=131 Identities=21% Similarity=0.318 Sum_probs=90.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccc----cCCC--CceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCCch
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA----SAGS--SGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSE 87 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~~~~--~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~ 87 (170)
+-.++|+++|++|+|||||+|+|++...... +... ...+.........+.. ...+.++||||++++.....
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 4567999999999999999999998732222 1111 1233334444433312 34688999999999766543
Q ss_pred HH-------HHHHHHHHH----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239 88 FV-------GKEIVKCIG----------LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY 149 (170)
Q Consensus 88 ~~-------~~~~~~~~~----------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (170)
.| ..++..++. ....++|++||.+.++ +++...|..++..+.+.. ++|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeecccc
Confidence 22 222222221 1245789999999984 789999999888888863 99999999999
Q ss_pred CCCC
Q 046239 150 LEDN 153 (170)
Q Consensus 150 ~~~~ 153 (170)
+...
T Consensus 175 lT~~ 178 (373)
T COG5019 175 LTDD 178 (373)
T ss_pred CCHH
Confidence 9874
No 136
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.61 E-value=1.8e-14 Score=98.55 Aligned_cols=118 Identities=18% Similarity=0.111 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|.+|+|||||++.+++.........+.+ ........... ....+.+|||||... +......
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIG--VDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhHHH
Confidence 689999999999999999998654222111111 11111222221 134688999999864 2223344
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+.+..+... ..+++.+.+..... ..|+++|.||.|+...
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPS-SVLLFLVGTKKDLSSP 121 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEChhcCcc
Confidence 5678999999999974322221 23333332221111 1368999999997543
No 137
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.61 E-value=2.6e-14 Score=96.83 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||++.+++...........+ .......... .+ ..+.+|||+|...+ .....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG--VDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------HhhHH
Confidence 689999999999999999887654322111111 1122223333 22 35779999997642 22233
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+...+|++++|+|++++-+... ..+++.+...... ..|+++|.||.|+...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQK 120 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 45678899999999974433222 2333434333222 2489999999997654
No 138
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=2.2e-14 Score=99.39 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEe-eEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCE-MKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+|+++|++|+|||||++.+++........ .+.... ....... ....+.+|||||... +....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~----~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYV----PTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRLR 66 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCC----CeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHHH
Confidence 78999999999999999999765432211 111111 1122221 123578999999764 22223
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....++|++++|+|.++..+..+. .++..+... .. ..|+++|.||+|+...
T Consensus 67 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~~ 120 (187)
T cd04132 67 PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhhC
Confidence 3356789999999999754333332 233333322 12 2499999999998653
No 139
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.61 E-value=1.9e-14 Score=111.60 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=84.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc-----------------------------ccCCCCceeEEEeeEEEEe
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK-----------------------------ASAGSSGVTITCEMKTTVL 65 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~ 65 (170)
+.++..+|+++|+.++|||||+++|++..... ......+.|.......+.+
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 45677899999999999999999998432110 0112356666666666666
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN--RFSQEEEAAVHRLPTLFGKKIFDYMIVV 143 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (170)
.+..+.++||||+.++. ..+. .....+|++++|+|+.+ .+.......+..+.. ++. .+++++
T Consensus 82 -~~~~i~liDtpG~~~~~-------~~~~----~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivv 145 (425)
T PRK12317 82 -DKYYFTIVDCPGHRDFV-------KNMI----TGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVA 145 (425)
T ss_pred -CCeEEEEEECCCcccch-------hhHh----hchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEE
Confidence 67889999999986531 1111 23467899999999986 555555555554443 221 379999
Q ss_pred EEcCCCCCC
Q 046239 144 FTGGDYLED 152 (170)
Q Consensus 144 ~tk~D~~~~ 152 (170)
+||+|+...
T Consensus 146 iNK~Dl~~~ 154 (425)
T PRK12317 146 INKMDAVNY 154 (425)
T ss_pred EEccccccc
Confidence 999998764
No 140
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.61 E-value=2.7e-14 Score=116.96 Aligned_cols=124 Identities=22% Similarity=0.244 Sum_probs=81.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-HHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~ 97 (170)
..+|+++|.+|+|||||+|+|+|..... + ..++.|.......+.+ .+..+.++||||+++...... ....+.....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v-g-n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV-G-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc-C-CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 4689999999999999999999976532 2 2356666655555655 677899999999997643211 1111211111
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|+++ ... +......+.+. + .|+++++||+|..+.
T Consensus 80 ~l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~---g--iPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 80 YILSGDADLLINVVDASN-LER-NLYLTLQLLEL---G--IPCIVALNMLDIAEK 127 (772)
T ss_pred HHhccCCCEEEEEecCCc-chh-hHHHHHHHHHc---C--CCEEEEEEchhhhhc
Confidence 112457899999999973 322 22333334332 2 599999999998754
No 141
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=2.6e-14 Score=97.49 Aligned_cols=133 Identities=17% Similarity=0.078 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|++|+|||||++.+++...........+ .......+.+. ....+.+|||||... +...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~ 70 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSL 70 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee--eEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHh
Confidence 447899999999999999999987654322221211 11112222221 224567899999753 2333
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC--hhhHHHHhhh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN--EKTLEDYLGH 163 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~--~~~~~~~~~~ 163 (170)
.......+|++++|++++++-+... ..+...+...... ....|+++|.||+|+.... .+.++++.++
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 142 (170)
T cd04116 71 RTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRE 142 (170)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHH
Confidence 4445678899999999874432222 2233333332211 1124899999999986321 1345555443
No 142
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=1.2e-14 Score=99.16 Aligned_cols=117 Identities=18% Similarity=0.074 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++++++.......... ... ........ .....+.++||||+..+.. ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----------~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPT-VFD--NYSATVTVDGKQVNLGLWDTAGQEEYDR-----------LRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eee--eeEEEEEECCEEEEEEEEeCCCcccccc-----------cch
Confidence 37899999999999999999987642221111 111 11111111 1234688999999886311 111
Q ss_pred hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.....+|++++|+|.++..+... ..++..+..... ..|+++|.||+|+....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE 120 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence 23467899999999974322222 233444444322 35999999999988663
No 143
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.61 E-value=1.7e-14 Score=97.82 Aligned_cols=117 Identities=19% Similarity=0.141 Sum_probs=69.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|++|+|||||++++++.......... ............ ....+.++||||...+. .....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPT---IEDSYRKQIEIDGEVCLLDILDTAGQEEFS-----------AMRDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCc---hhhhEEEEEEECCEEEEEEEEECCCcccch-----------HHHHH
Confidence 7899999999999999999976542221111 111111122221 12457789999987531 12223
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++++++|+++++.-+... ..+...+.+.... ...|+++|.||+|+...
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 4556799999999974322222 2223333333221 13599999999998654
No 144
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.61 E-value=2.2e-14 Score=99.97 Aligned_cols=114 Identities=21% Similarity=0.197 Sum_probs=70.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEE--EeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTIT--CEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.+|+++|.+|+|||||++++++........ ..|.. .....+.. .+ ..+.+|||||...+ ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 379999999999999999999765422111 11211 11122333 33 34569999998642 12
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.......++|++++|+|+++..+... ..+++.+... ....|+++|.||+|+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 22335668899999999974422222 2344444432 11259999999999764
No 145
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.60 E-value=3.1e-14 Score=95.84 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||++++++.......... +.......... . ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPT---IEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCC---hhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 5899999999999999999976532221111 11112222222 2 24678999999864 222222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+++++|++.++..+..+ ..++..+.+.... ...|++++.||+|....
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence 34556799999999874322222 2334444443321 23599999999998863
No 146
>COG2262 HflX GTPases [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=106.40 Aligned_cols=137 Identities=23% Similarity=0.205 Sum_probs=88.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239 10 WKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 89 (170)
.+..+....-+.|+++|.+++|||||+|+|++...+.... ...|-........++.+..+.+-||.||-+ .-+...
T Consensus 183 ~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~--LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~L 258 (411)
T COG2262 183 RRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ--LFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPL 258 (411)
T ss_pred HhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccc--ccccccCceeEEEeCCCceEEEecCccCcc--cCChHH
Confidence 3445566677899999999999999999999887654321 112222223334454578999999999985 233333
Q ss_pred HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
...|..-+. -...+|+++.|+|++++.-.... ...+.|.++--.. .|+++|+||.|++.+.
T Consensus 259 V~AFksTLE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 259 VEAFKSTLE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLEDE 320 (411)
T ss_pred HHHHHHHHH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCch
Confidence 333333332 23678999999999865222222 3334444432122 5999999999998773
No 147
>PLN03108 Rab family protein; Provisional
Probab=99.60 E-value=6.1e-14 Score=99.08 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..+|+++|++|+|||||++.+++...........+.+. ......+. ....+.+|||+|... +....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~--~~~~i~~~~~~i~l~l~Dt~G~~~-----------~~~~~ 72 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMITIDNKPIKLQIWDTAGQES-----------FRSIT 72 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceE--EEEEEEECCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 47899999999999999999997654222111211111 11122221 123577999999753 22223
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|+.+.-+... ..++..+...... ..|+++|.||+|+...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence 345567899999999974322222 1333333333222 2589999999998653
No 148
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.60 E-value=4.4e-14 Score=112.95 Aligned_cols=116 Identities=24% Similarity=0.310 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|..++|||||+++|+|..... .+....+.|.......+.+ .+..+.++|+||+.. +......
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHHh
Confidence 68999999999999999999854211 1122345666666556666 567899999999853 3333344
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...++|++++|+|++++...+..+.+..+.. ++ . .++++|+||+|+.+.
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lg--i-~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LG--I-PHTIVVITKADRVNE 118 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cC--C-CeEEEEEECCCCCCH
Confidence 5678899999999987776776666655543 22 1 249999999999865
No 149
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.60 E-value=2.7e-14 Score=103.49 Aligned_cols=136 Identities=18% Similarity=0.143 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
.+++||-+++|||||+|+|+...+... ...-+|....+....+.....+.+-|.||+.+.....+-.+.+|++-+.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa--~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVA--HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCccc--ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 478999999999999999998775222 122344445555555544566999999999998888888899999888776
Q ss_pred cCCccEEEEEEeCCCC--CCHH-HH-HHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 101 KGGIHAVLVVFSARNR--FSQE-EE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~--~~~~-~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
..++||+|.+.. .++. +. ..+.++..+-.....+|.+||.||+|..+....-++++.+
T Consensus 276 ----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~ 337 (366)
T KOG1489|consen 276 ----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAK 337 (366)
T ss_pred ----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHH
Confidence 899999999733 1333 22 3333333332334556999999999987553222344443
No 150
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=5.8e-14 Score=96.21 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=73.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|..|+|||||++.+.+...........+. .. ...... .+ ..+.++||||...+ ..+.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~--~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED--AY-KQQARI-DNEPALLDILDTAGQAEF-----------TAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc--eE-EEEEEE-CCEEEEEEEEeCCCchhh-----------HHHh
Confidence 58999999999999999998865542221111111 11 111222 22 45788999998742 3334
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|++++++.+.... .+...+.+... ....|+++|.||+|+...
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence 4456778999999999866555543 23344444321 123599999999997643
No 151
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.59 E-value=1.4e-14 Score=97.95 Aligned_cols=115 Identities=19% Similarity=0.238 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||+|.|.|..... ..+. ...+ ... .+|||||+.... ......+. ..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~-----~v~~-~~~--~~iDtpG~~~~~---~~~~~~~~----~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ-----AVEF-NDK--GDIDTPGEYFSH---PRWYHALI----TT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccce-----EEEE-CCC--CcccCCccccCC---HHHHHHHH----HH
Confidence 79999999999999999999864311 1111 1122 122 269999986432 11222222 23
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH 163 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~ 163 (170)
..++|++++|+|+++..+.... ++.+. .. ..|+++++||+|+.+.+...+.+++++
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~ 117 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLE 117 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHH
Confidence 5678999999999744332222 22222 11 248999999999865543444555444
No 152
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.59 E-value=4.3e-14 Score=114.60 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=82.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee---CCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
....++|+++|..++|||||+++|++........ .+.|.....+...+. .+..+.||||||+..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~--~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------- 307 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA--GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------- 307 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccC--CccccccceEEEEEEecCCceEEEEEECCcHHH-----------
Confidence 4566899999999999999999998765433211 223332233333331 247899999999864
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+..........+|++++|++++++...+..+.+..+... . .|+++++||+|....+
T Consensus 308 F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 308 FSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANAN 363 (742)
T ss_pred HHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccC
Confidence 233333455677999999999877777666666554332 2 4999999999987653
No 153
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.59 E-value=5.7e-14 Score=97.60 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+|+++|..|+|||||++.+........... ..+.......+.. .+ ..+.+|||+|... +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~--t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~ 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGY--NMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCT 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--cceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 347899999999999999999987533111111 1122222222333 23 5678999999964 233
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....+...+|++++|+|++++.+... ..+++.+.+.. . ..|+++|.||.|+..
T Consensus 71 l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~ 124 (189)
T cd04121 71 IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchh
Confidence 34456678999999999985544443 34455554432 2 349999999999754
No 154
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.59 E-value=3.5e-14 Score=96.30 Aligned_cols=118 Identities=16% Similarity=0.114 Sum_probs=69.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|.+|+|||||+++++......... +.+........... ....+.++||||...+ .....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYD---PTIEDSYRKQVEVDGQQCMLEILDTAGTEQF-----------TAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccC---CcchheEEEEEEECCEEEEEEEEECCCcccc-----------hhHHH
Confidence 579999999999999999988543211111 11111111223231 1335679999998753 22223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|++.++.-+..+ ..++..+.+... ....|+++|.||+|+...
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence 34567799999999874333222 233344433221 122499999999998654
No 155
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.59 E-value=6.9e-14 Score=98.87 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|++|+|||||++.+++........ +..+.......+.+.. ...+.++||||... +...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--ceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHH
Confidence 3689999999999999999999765422211 1111111122222212 24678999999763 2233
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...++..+|++++|+|+++.-+..+ ..++..+.+.... ...++++|.||+|+...
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ 124 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc
Confidence 3445678899999999974432222 2333333333221 12468899999998654
No 156
>PRK00049 elongation factor Tu; Reviewed
Probab=99.59 E-value=1.7e-14 Score=110.79 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
.++..+|+++|..++|||||+++|++..... ......+.|.......+.. .+..+.++||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH
Confidence 4667899999999999999999998732110 1112345555554444443 466789999999852
Q ss_pred CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE-EEEEEcCCCCCC
Q 046239 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM-IVVFTGGDYLED 152 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|+.++....+...+..+... + .|. ++++||+|+...
T Consensus 88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD 143 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch
Confidence 333333456788999999999878888887777766653 1 365 468999999753
No 157
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=1.2e-14 Score=113.45 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=85.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccc--------------cccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAF--------------KASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
...++..+|+++|..++|||||+++|++.... .......+.|.......+.+ .+..+.++||||+
T Consensus 76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh 154 (478)
T PLN03126 76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGH 154 (478)
T ss_pred hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCH
Confidence 34677889999999999999999999852110 01122345555554444555 6778999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+ ....+ ......+|++++|+|+.++...+..+.+..+... +. +++++++||+|+...
T Consensus 155 ~~-------f~~~~----~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 155 AD-------YVKNM----ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD 212 (478)
T ss_pred HH-------HHHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH
Confidence 64 22233 3344577999999999888877777777655543 21 248889999998764
No 158
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.58 E-value=1.7e-14 Score=110.79 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=81.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
.++..+|+++|..++|||||+++|++..... ......+.|.......+.. .+..+.++||||+.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 5677899999999999999999998531100 0111245555544444433 456789999999964
Q ss_pred CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+ ...+ ......+|++++|+|+.++....+.+.+..+... + . .++++++||+|+.+.
T Consensus 88 f-------~~~~----~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-g--i-~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 Y-------VKNM----ITGAAQMDGAILVVSATDGPMPQTREHILLARQV-G--V-PYIVVFLNKCDMVDD 143 (394)
T ss_pred H-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C--C-CEEEEEEEecccCCH
Confidence 2 1222 2334577999999999877777777777766543 1 1 245678999998764
No 159
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.58 E-value=5.4e-14 Score=99.80 Aligned_cols=113 Identities=21% Similarity=0.127 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|.+|+|||||++.+++...... . .|.........+ ....+.+|||||...+. .....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-~----~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~-----------~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-V----STVGGAFYLKQW-GPYNISIWDTAGREQFH-----------GLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-C----CccceEEEEEEe-eEEEEEEEeCCCcccch-----------hhHHH
Confidence 3689999999999999999987664321 1 122222232333 34578999999987532 12223
Q ss_pred ccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+...+|++++|+|++++.+..+. .++..+.+.... ..|+++|.||+|+.+
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~--~~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANE--DCLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 46788999999999855444332 233333332222 248999999999865
No 160
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.58 E-value=2.4e-14 Score=100.19 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=92.7
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-----CCCCceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~ 85 (170)
....-.++|++||++|.||||++|.|........+ ..+.+.|...........+ +..+.++||||++++...
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 34455689999999999999999999865443321 1133344444444433322 245789999999998776
Q ss_pred chHH-------HHHHHHHHH----------hccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239 86 SEFV-------GKEIVKCIG----------LAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 86 ~~~~-------~~~~~~~~~----------~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
.+.| ..+..++++ ....++|+.+|.++++ +.+.+.|.++++.|.+.. +++-|+-|+
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIaka 194 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKA 194 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeec
Confidence 6544 122222221 1245789999999985 778888999999999875 899999999
Q ss_pred CCCCC
Q 046239 148 DYLED 152 (170)
Q Consensus 148 D~~~~ 152 (170)
|.+.-
T Consensus 195 DtlTl 199 (336)
T KOG1547|consen 195 DTLTL 199 (336)
T ss_pred ccccH
Confidence 98866
No 161
>PTZ00369 Ras-like protein; Provisional
Probab=99.58 E-value=5.2e-14 Score=97.83 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+..+|+++|.+|+|||||++.+++.........+.+.+. ....... ....+.+|||||..++. ..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~l 69 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY---RKQCVIDEETCLLDILDTAGQEEYS-----------AM 69 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE---EEEEEECCEEEEEEEEeCCCCccch-----------hh
Confidence 357999999999999999999997654222111111111 1112221 22357789999987632 22
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...++++++|+|+++.-+..+ ..+.+.+.+.... ...|+++|.||+|+...
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE 125 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 3335567899999999975433222 2334444443221 12489999999997543
No 162
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=4.7e-14 Score=97.18 Aligned_cols=115 Identities=13% Similarity=0.026 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|.+|+|||||++.+++.........+.+ ... ...+... ....+.+|||+|...+ .....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~--~~~-~~~~~~~~~~~~l~iwDt~G~~~~-----------~~~~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVF--ENY-TASFEIDEQRIELSLWDTSGSPYY-----------DNVRP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceE--EEE-EEEEEECCEEEEEEEEECCCchhh-----------hhcch
Confidence 4799999999999999999987654222111111 111 1122221 2345789999998643 12222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....++|++++|+|++++-+... ..++..+.+... ..|+++|.||+|+..
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~ 119 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT 119 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence 35678899999999985544443 245555555432 249999999999753
No 163
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=7.4e-14 Score=99.71 Aligned_cols=117 Identities=13% Similarity=0.017 Sum_probs=74.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|.+|+|||+|++.+++.........+.+.. .. ..+.. .....+.||||+|... +..+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~--~~-~~i~~~~~~v~l~iwDTaG~e~-----------~~~~ 77 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YT-AGLETEEQRVELSLWDTSGSPY-----------YDNV 77 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee--eE-EEEEECCEEEEEEEEeCCCchh-----------hHHH
Confidence 34689999999999999999998764322211111111 11 11222 1235688999999864 2233
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
...++.++|++++|+|+++.-+... ..++..+.+... ..|+++|.||+|+..
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 131 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 3346789999999999985544332 244555554332 248999999999753
No 164
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.9e-13 Score=91.89 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccc-----cCCCC---ceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSS---GVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----~~~~~---~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 89 (170)
...+|++.|+.++||||+++.++....... ..... ..|....+....+..+..+.+++|||+..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R-------- 80 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER-------- 80 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH--------
Confidence 356899999999999999999997663221 12222 36666777777764558999999999985
Q ss_pred HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-hhHHHHhhhc
Q 046239 90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-KTLEDYLGHE 164 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~~~~~ 164 (170)
+..++.....++..+++++|.+...+......++.+..... .|++|.+||.|+.+..+ +.++++++..
T Consensus 81 ---F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~~ 149 (187)
T COG2229 81 ---FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKLE 149 (187)
T ss_pred ---HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHhc
Confidence 34444455677888888889876766666667776666532 49999999999987644 6788887763
No 165
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=5.9e-14 Score=104.28 Aligned_cols=131 Identities=20% Similarity=0.237 Sum_probs=89.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----cCCCCceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCCchH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSEF 88 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~ 88 (170)
+-.+.++++|++|.|||||||+|++...... .......+............ ..++.++||||++++-.....
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 3458999999999999999999998743221 11111123333333333311 246889999999987554432
Q ss_pred H-------HHHHHHHHHh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 89 V-------GKEIVKCIGL---------AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 89 ~-------~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+ ..++..++.. ...++|+.||.+++. +++.+.|..+++.+.... ++|-|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence 2 3334444421 234789999999985 679999999888887764 9999999999998
Q ss_pred CC
Q 046239 152 DN 153 (170)
Q Consensus 152 ~~ 153 (170)
..
T Consensus 173 ~~ 174 (366)
T KOG2655|consen 173 KD 174 (366)
T ss_pred HH
Confidence 84
No 166
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.58 E-value=9.4e-14 Score=97.33 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=75.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee------CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK------DGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+|+++|.+|+|||||++.+++.........+.+.+. ....+.+. ....+.+|||+|... +.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~--~~k~~~~~~~~~~~~~~~l~IwDtaG~e~-----------~~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSV--DVKHHTYKEGTPEEKTFFVELWDVGGSES-----------VK 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeE--EEEEEEEcCCCCCCcEEEEEEEecCCchh-----------HH
Confidence 689999999999999999998654322222222111 12222221 123578999999975 23
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-----------------ccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-----------------KKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~ivv~tk~D~~~~ 152 (170)
.+...++.++|++++|+|++++-+... ..++..+.+.-. .....|+++|.||+|+.+.
T Consensus 69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 334456788999999999985544443 244444443210 0112499999999998764
No 167
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.58 E-value=9.9e-14 Score=111.37 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|..++|||||+++|+|..... ......+.|+...........+..+.++||||+.. +......
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 68999999999999999999864211 11233466666554444443466789999999953 2233334
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+++++++..++.+.+..+... +. .++++|+||+|+.+.
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GN---PMLTVALTKADRVDE 119 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCccCCH
Confidence 45678999999999888888887777765543 21 357899999998764
No 168
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.58 E-value=4.9e-14 Score=96.82 Aligned_cols=127 Identities=16% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|+.||||||+++.|....... ..+|.......+.+ .+..+.++|.+|... +..
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~ 73 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRP 73 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------ccc
Confidence 3667899999999999999999998654322 23444455566666 788999999999863 344
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL 161 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~ 161 (170)
.+..+...+++++||+|..+.-. -.+..+.+.+++.. ....|++|++||.|..+.. ..++.+++
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~--l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l 140 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPER--LQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYL 140 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGG--HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHT
T ss_pred cceeeccccceeEEEEeccccee--ecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhh
Confidence 55567788999999999974321 22233444444432 2246999999999987652 24455444
No 169
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.58 E-value=3.8e-14 Score=96.00 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|.+|+|||||++.++............ .......... .+ ..+.++||||...+.. ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~---~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI---EDFYRKEIEV-DSSPSVLEILDTAGTEQFAS-----------MR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch---hheEEEEEEE-CCEEEEEEEEECCCcccccc-----------hH
Confidence 579999999999999998888764432211111 1111122222 22 3577899999875421 12
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....++|++++|+|+.+.-+..+ ..++..+.+... ....|+++|.||+|+...
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence 223567899999999974433222 334444444322 123599999999997543
No 170
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.58 E-value=9e-14 Score=94.01 Aligned_cols=118 Identities=16% Similarity=0.062 Sum_probs=69.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||++++++............. .......... ....+.++||||..++ ......
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~~ 67 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDG-EDVQLNILDTAGQEDY-----------AAIRDN 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECC-EEEEEEEEECCChhhh-----------hHHHHH
Confidence 37899999999999999999976543221111111 1111111111 2346889999998753 122233
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.....++++++++..+.-+... ..++..+..... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 5567799999999863321111 223333333211 12359999999999876
No 171
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.57 E-value=7.1e-14 Score=96.60 Aligned_cols=117 Identities=14% Similarity=0.039 Sum_probs=75.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|.+|+|||||++.++..........+.+.. . ....... ....+.+|||+|...+ ...
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~--~-~~~~~~~~~~~~l~iwDtaG~e~~-----------~~~ 69 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN--Y-TASFEIDTQRIELSLWDTSGSPYY-----------DNV 69 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee--e-EEEEEECCEEEEEEEEECCCchhh-----------Hhh
Confidence 45689999999999999999998765422211111111 1 1122220 2346889999998642 223
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
...++.++|++++|+|++++.+... ..+++.+.+... ..|+++|.||+|+.+
T Consensus 70 ~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 123 (182)
T cd04172 70 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEeEChhhhc
Confidence 3346788999999999985544443 345555655432 259999999999743
No 172
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.57 E-value=6.6e-14 Score=97.39 Aligned_cols=117 Identities=19% Similarity=0.160 Sum_probs=70.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|.+|+|||||++.+++...........+ .. ....... .+ ..+.+|||||...+ .....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~-~~--~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DS--YRKQVVV-DGQPCMLEVLDTAGQEEY-----------TALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchH-hh--EEEEEEE-CCEEEEEEEEECCCchhh-----------HHHHH
Confidence 479999999999999999986543221111111 11 1111222 23 34788999998642 22233
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~ 152 (170)
.++..+|++++|+|.++..+... ..+++.+...... ....|+++|.||+|+...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~ 121 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE 121 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence 45667899999999974433332 3444555444321 123599999999998643
No 173
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=1.8e-14 Score=95.48 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=64.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|++|+|||||+|++++.... ...|. ...+ .. .++||||.... ....+.... ..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~-----~~~~-~~---~~iDt~G~~~~------~~~~~~~~~-~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQ-----AVEY-ND---GAIDTPGEYVE------NRRLYSALI-VT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cccce-----eEEE-cC---eeecCchhhhh------hHHHHHHHH-HH
Confidence 6899999999999999999986531 11121 1222 22 68999998420 111122222 24
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
..++|++++|+|++++.+..+..+++ ... .|+++|+||+|+..
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCC
Confidence 67899999999997665544432222 121 38999999999865
No 174
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.57 E-value=4e-14 Score=96.92 Aligned_cols=113 Identities=21% Similarity=0.139 Sum_probs=70.1
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
|+++|.+|+|||||++++++........ + ............ .+ ..+.+|||||...+. .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYV-P--TVFENYSADVEV-DGKPVELGLWDTAGQEDYD-----------RLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCC-C--cEEeeeeEEEEE-CCEEEEEEEEECCCCcccc-----------hhchh
Confidence 5899999999999999999865422211 1 111111122222 22 357899999987532 12223
Q ss_pred ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|.++.-+... ..++..+.+.. ...|+++|.||+|+...
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED 117 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC
Confidence 5678899999999974422222 23444444432 23599999999998653
No 175
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.57 E-value=4.1e-14 Score=98.38 Aligned_cols=116 Identities=16% Similarity=0.091 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|.+|+|||||++.+++.........+.. ... ....... ....+.+|||+|...+. ....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~--~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~-----------~l~~ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVF--ENY-VHDIFVDGLHIELSLWDTAGQEEFD-----------RLRS 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcce--eee-EEEEEECCEEEEEEEEECCCChhcc-----------cccc
Confidence 3789999999999999999997654322111111 111 1112221 12468899999987532 1222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+..++++++|+++++.-+... ..++..+.+.. ...|+++|.||+|+...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence 35678899999999975433332 23455554432 23599999999998765
No 176
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=101.07 Aligned_cols=125 Identities=22% Similarity=0.197 Sum_probs=88.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhcc
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAK 101 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (170)
+++||-+++|||||++.++...+-.. ..+-+|..+....+....+..+++-|.||+.+......-.+.+|++-+.++
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIa--dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt- 238 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIA--DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT- 238 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCccc--CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh-
Confidence 78999999999999999998764221 222233333333333335778999999999998888888889999888777
Q ss_pred CCccEEEEEEeCCCC--CCH-HH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 102 GGIHAVLVVFSARNR--FSQ-EE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 102 ~~~~~il~v~~~~~~--~~~-~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+++.|+|++.. .++ ++ ..+..+|..+-..-..+|.+||+||+|.+.+
T Consensus 239 ---~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 239 ---RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred ---heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 889999998721 122 23 3444555554444455799999999996655
No 177
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.56 E-value=2.6e-14 Score=97.08 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=67.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|++|+|||||+++++....... ..+...... .....+ .+ ..+.+|||||...... . .. .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~----~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGE-YDPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQADT--E----QL----E 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccc-cCCChHHhc--eEEEEE-CCEEEEEEEEECCCCccccc--c----hH----H
Confidence 489999999999999999876432111 111111111 111222 22 3577999999974100 0 11 1
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|+++.-+... ..++..+.+........|+++|.||+|+...
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 23456799999999975433332 2344445443210123589999999997543
No 178
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.56 E-value=4.1e-14 Score=100.38 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccc----c----------CCCCceeEEEeeEEEEee---------CCceEEEEeC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKA----S----------AGSSGVTITCEMKTTVLK---------DGQVVNVIDT 76 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~~---------~~~~~~l~Dt 76 (170)
++|+++|..++|||||+.+|+....... + ....+.|.........+. .+..+.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999875321100 0 111223333222222231 1567889999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
||+.++ ..........+|++++|+|+.++........++..... + .|+++++||+|+.
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 999863 22233445677999999999888877776666654432 2 4899999999976
No 179
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.56 E-value=1.7e-13 Score=93.84 Aligned_cols=115 Identities=20% Similarity=0.115 Sum_probs=71.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++.+++........... . ......... .+ ..+.+|||||...+.. ..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-F--DHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e--eeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------cc
Confidence 378999999999999999998765432211111 1 111112222 22 3467899999876421 12
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......|++++|++..++-+..+ ..++..+... .. ..|+++|.||+|+.+.
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~ 119 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD 119 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC
Confidence 234678899999999874433322 2344555443 22 2599999999997654
No 180
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.56 E-value=1.1e-13 Score=94.26 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++++++...........+ ..-.....+. ....+.+|||||...+. ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE---DSYRKQVEIDGRQCDLEILDTAGTEQFT-----------AMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch---heEEEEEEECCEEEEEEEEeCCCcccch-----------hhhH
Confidence 5799999999999999999987654222111111 1111122221 12467899999987642 2222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....++++++|++.+++-+... ..+.+.+.+... ....|++++.||.|....
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD 121 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhcccc
Confidence 34456789999999874322222 233444444322 223599999999998654
No 181
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.56 E-value=1.1e-13 Score=95.64 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|.+|+|||||++.+++.........+.+.. .....+.. .+ ..+.+|||+|...+ .....
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~--~~~~~i~~-~~~~~~l~iwDt~G~~~~-----------~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVN--FMEKTISI-RGTEITFSIWDLGGQREF-----------INMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE--EEEEEEEE-CCEEEEEEEEeCCCchhH-----------HHhhH
Confidence 68999999999999999998765422212121111 11122333 22 46789999998742 23334
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.+...+|++++|+|++++.+..+ ..+++.+.+..... .| ++|.||+|+..
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~ 118 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFA 118 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccc
Confidence 46788999999999975544333 23444444432222 35 68899999863
No 182
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=4.8e-14 Score=110.30 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=84.1
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------c-----------------CCCCceeEEEe
Q 046239 11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S-----------------AGSSGVTITCE 59 (170)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~ 59 (170)
..++..++..+|+++|..++|||||++.|+....... + ....+.|....
T Consensus 19 ~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~ 98 (474)
T PRK05124 19 LHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVA 98 (474)
T ss_pred HhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEee
Confidence 3444567778999999999999999999875431100 1 01123455555
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239 60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139 (170)
Q Consensus 60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (170)
...+.+ .+..+.++||||+.+ +..........+|++++|+|+.+++...+.+.+..+.. ++. ++
T Consensus 99 ~~~~~~-~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~ 162 (474)
T PRK05124 99 YRYFST-EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KH 162 (474)
T ss_pred EEEecc-CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---Cc
Confidence 555555 577899999999753 22222223477899999999987776655544443333 321 47
Q ss_pred EEEEEEcCCCCCCC
Q 046239 140 MIVVFTGGDYLEDN 153 (170)
Q Consensus 140 ~ivv~tk~D~~~~~ 153 (170)
+++++||+|....+
T Consensus 163 iIvvvNKiD~~~~~ 176 (474)
T PRK05124 163 LVVAVNKMDLVDYS 176 (474)
T ss_pred eEEEEEeeccccch
Confidence 99999999998543
No 183
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.56 E-value=1.3e-13 Score=94.67 Aligned_cols=114 Identities=22% Similarity=0.140 Sum_probs=72.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee-EEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+|+++|.+|+|||||++.+.......... .|..... ..... .+ ..+.+|||+|...+. ..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~----pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYV----PTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD-----------RL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CceeeeeEEEEEE-CCEEEEEEEEECCCccchh-----------hh
Confidence 478999999999999999998755322111 1211111 12223 33 467799999997531 12
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......++|++++|+|.+++.+.... .++..+.... . ..|+++|.||+|+...
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~ 120 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P--KTPFLLVGTQIDLRDD 120 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECHhhhhC
Confidence 22356788999999999755433332 2444444432 1 2599999999997544
No 184
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.56 E-value=1.3e-13 Score=94.24 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+-.+++++|.+|+|||||++.+++.... .....+.+ .........+ .+ ..+.++|++|...+.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~--~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~----------- 68 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK--PRYAVNTVEV-YGQEKYLILREVGEDEVAI----------- 68 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC--cceEEEEEEE-CCeEEEEEEEecCCccccc-----------
Confidence 4468999999999999999999986643 22111111 1111222333 23 457789999987532
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+..+|++++|+|++++.+. ....+++.. +......|+++|.||+|+.+.
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~--~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSF--SYCAEVYKK-YFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHH--HHHHHHHHH-hccCCCCeEEEEEEccccccc
Confidence 1112235788999999998743211 122233332 211123599999999998644
No 185
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.56 E-value=1.4e-13 Score=112.29 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=86.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc---c----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK---A----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~---~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
...-++|+++|+.++|||||+++|+...... . + ....+.|.......+.| .+..+.++||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence 3445799999999999999999996422110 0 0 01235666666677777 7889999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.++. .+ +......+|++++|+|+.++....+...+..+... + .|+++++||+|....+
T Consensus 86 ~~~~-------~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~---~--~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 86 VDFT-------VE----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY---E--VPRIAFVNKMDKTGAN 143 (689)
T ss_pred cchh-------HH----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence 8642 11 22344566999999999878777777777665443 2 4899999999988653
No 186
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=1e-13 Score=113.17 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=87.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhh---CCcccccc-------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~---~~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
...-++|+++|+.++|||||+++|+ |....... ....+.|.......+.| .+..+.++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 3445799999999999999999996 32211100 02345666666666767 7889999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.++ ..+.. .....+|++++|+|+.+++..++...+..+.+.. .|.++++||+|....+
T Consensus 86 ~~f-------~~ev~----~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 VDF-------TIEVE----RSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK-----VPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHH-------HHHHH----HHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence 752 12222 3345569999999998888888888888776642 4889999999998763
No 187
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.56 E-value=2.8e-13 Score=90.50 Aligned_cols=117 Identities=23% Similarity=0.182 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|.+|+|||||++++++... .... ....+.......... .+ ..+.++|+||...+. ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence 5899999999999999999998773 2222 223333333333334 44 568899999976531 111
Q ss_pred HhccCCccEEEEEEeCCCC-CCHH--HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNR-FSQE--EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......++.+++++|.... .+.. .......+...... ..|+++++||+|+...
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA 123 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence 1122334555555555322 1111 11233334333321 3599999999999765
No 188
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.56 E-value=1.6e-13 Score=109.78 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=83.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcc---ccc-----------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKA---FKA-----------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~---~~~-----------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (170)
++|+++|..++|||||+++|+.... ... .....+.|.......+.| .+..+.++||||+.+|
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 5799999999999999999985311 110 012245666666667777 7889999999999763
Q ss_pred chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+......+|++++|+|+.++...+...++..+.+. . .|.++++||+|....
T Consensus 78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a 131 (594)
T TIGR01394 78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSA 131 (594)
T ss_pred --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCc
Confidence 22223345567999999999877777777776666553 2 388999999998755
No 189
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=1e-13 Score=113.19 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=86.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--cc--------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--AS--------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
...-.+|+++|+.++|||||+++|+...... .+ ....+.|.......+.| .+..+.++||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCH
Confidence 3445789999999999999999996421100 00 12345566666666767 7889999999998
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.++ ...+......+|++++|+|+.++...++...+..+... + .|+++++||+|....
T Consensus 84 ~~f-----------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~---~--~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDF-----------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY---G--VPRIVFVNKMDRIGA 140 (691)
T ss_pred HHH-----------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCC
Confidence 642 11233445566999999999888888888777776553 2 488999999999866
No 190
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.55 E-value=1.9e-14 Score=108.15 Aligned_cols=119 Identities=21% Similarity=0.196 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee-EEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT-ITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+|+|.+|+|||||||+|.|......+....|.+ ++.....+..+...++.+||.||.+.+....+....++
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--- 110 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV--- 110 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT---
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc---
Confidence 45789999999999999999999876544443333322 12233334444567899999999987544334332222
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY 149 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (170)
-....|++|++.+ .+++..+..++..+.+.- +++++|-||+|.
T Consensus 111 ---~~~~yD~fiii~s--~rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 ---KFYRYDFFIIISS--ERFTENDVQLAKEIQRMG-----KKFYFVRTKVDS 153 (376)
T ss_dssp ---TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT------EEEEEE--HHH
T ss_pred ---cccccCEEEEEeC--CCCchhhHHHHHHHHHcC-----CcEEEEEecccc
Confidence 2456688776655 389999988888888752 589999999995
No 191
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-13 Score=99.73 Aligned_cols=131 Identities=20% Similarity=0.180 Sum_probs=89.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc-hHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIV 94 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~ 94 (170)
......++++|.+++|||||.|.+.|....... ....|++...-.+-....-.+.++||||+-....-. ......++
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS--~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVS--RKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccc--ccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 345678999999999999999999998875542 233444444433333367789999999998754322 22233334
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..+.+..++|+++.++|+.+.-.....+.++.+..... .|-++|.||.|.+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQ 200 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchh
Confidence 444556778899999999974333334556666666531 389999999998866
No 192
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.55 E-value=1.3e-13 Score=96.01 Aligned_cols=117 Identities=16% Similarity=0.028 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..+|+++|.+|+|||||+..++..........+.+ .. . ...... .....+.+|||+|...+ ..+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~-~-~~~~~~~~~~~~l~i~Dt~G~e~~-----------~~l~ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVF-DN-Y-SAQTAVDGRTVSLNLWDTAGQEEY-----------DRLR 68 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceE-ee-e-EEEEEECCEEEEEEEEECCCchhh-----------hhhh
Confidence 36899999999999999999886543222111111 11 1 111122 12346889999999752 2334
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..++.++|++++|+|++++-+.... .+...+.+.. . ..|+++|.||.|+.+.
T Consensus 69 ~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~ 122 (191)
T cd01875 69 TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRND 122 (191)
T ss_pred hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhcC
Confidence 4467889999999999755443332 2333344322 2 3599999999997543
No 193
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.55 E-value=2.1e-13 Score=93.65 Aligned_cols=115 Identities=17% Similarity=0.003 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+++++|.+|+|||||+..++.............. ......... ....+.+|||||...+ .....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD---NYSANVMVDGKPVNLGLWDTAGQEDY-----------DRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee---eeEEEEEECCEEEEEEEEECCCchhh-----------hhhhh
Confidence 57999999999999999988865432221111111 111112221 1246789999998642 22223
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.+..++|++++|+|++++-+.... .++..+.... . ..|+++|.||+|+..
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~ 119 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P--NTPIILVGTKLDLRD 119 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEeeChhhcc
Confidence 456789999999999854333332 2444444432 1 259999999999754
No 194
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.55 E-value=1.4e-13 Score=97.89 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc---cc--------------------------cccCCCCceeEEEeeEEEEeeCCceE
Q 046239 21 TVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTITCEMKTTVLKDGQVV 71 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (170)
+|+++|..++|||||+.+|+... .. .......+.|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 48999999999999999885321 10 00112345556666666666 78899
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 72 NVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
.++||||+.++ ..........+|++++|+|+.+. ........+.... .++ .+|+++++
T Consensus 80 ~liDtpG~~~~-----------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRDF-----------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHHH-----------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence 99999998542 12222344678999999999753 2223333333332 222 14899999
Q ss_pred EcCCCCC
Q 046239 145 TGGDYLE 151 (170)
Q Consensus 145 tk~D~~~ 151 (170)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999883
No 195
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.55 E-value=2e-13 Score=97.00 Aligned_cols=116 Identities=16% Similarity=0.036 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|.+|+|||||++.+++.........+.+..- . ..+.. .....+.+|||+|...+ .....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~--~~~~~~~~~v~L~iwDt~G~e~~-----------~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-T--ASFEIDKRRIELNMWDTSGSSYY-----------DNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-E--EEEEECCEEEEEEEEeCCCcHHH-----------HHHhH
Confidence 4789999999999999999997654322111111111 1 11222 02346778999998642 22333
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.++..+|++++|+|+++.-+.... .+...+... .. ..|+++|.||+|+...
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~-~~--~~piiLVgnK~DL~~~ 120 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF-CP--NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEEECcccccc
Confidence 467899999999999854333322 222223222 12 2499999999997543
No 196
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.55 E-value=1.5e-13 Score=97.75 Aligned_cols=118 Identities=20% Similarity=0.076 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCce-eEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|.+|+|||||++.+++.........+... ........+.. ....+.+|||||... . ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~-------~---~~~--- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM-------W---TED--- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch-------H---HHh---
Confidence 37899999999999999999754432111111111 11111112211 235688999999972 1 111
Q ss_pred hccC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKG-GIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~-~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+.. .+|++++|+++++.-+... ..++..+.+.. .....|+++|.||+|+...
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS 121 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc
Confidence 1223 7899999999975433222 33444444432 1123599999999998654
No 197
>PLN00023 GTP-binding protein; Provisional
Probab=99.55 E-value=3.7e-13 Score=99.43 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--------------CCceEEEEeCCC
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--------------DGQVVNVIDTPG 78 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~l~DtpG 78 (170)
........+|+++|.+|+|||||++.+++.........+.+.+. ....+.+. ....+.||||+|
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 34455668999999999999999999997654222222222221 11222221 124588999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc----------cccceEEEEEEcC
Q 046239 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK----------KIFDYMIVVFTGG 147 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~----------~~~~~~ivv~tk~ 147 (170)
... +..+...++.+++++|+|+|+++.-+... ..+++.+...... ....|++||.||+
T Consensus 93 qEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 93 HER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred Chh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 975 33444556788999999999985433332 3445555543210 0124899999999
Q ss_pred CCCCC
Q 046239 148 DYLED 152 (170)
Q Consensus 148 D~~~~ 152 (170)
|+...
T Consensus 162 DL~~~ 166 (334)
T PLN00023 162 DIAPK 166 (334)
T ss_pred ccccc
Confidence 98543
No 198
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=5e-14 Score=107.24 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
......+..|+++|+|++|||||+|+|+..+....+. -++.|...-...++. ++..++++||.|+-+-. .+.+...
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSp-v~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~--~~~iE~~ 337 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSP-VPGTTRDAIEAQVTV-NGVPVRLSDTAGIREES--NDGIEAL 337 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCC-CCCcchhhheeEeec-CCeEEEEEecccccccc--CChhHHH
Confidence 3345567899999999999999999999987655432 335665555666666 89999999999998711 1222222
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-ccc------ceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK-KIF------DYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~------~~~ivv~tk~D~~~~ 152 (170)
=+..++....++|++++|+|+.+..+..+....+.+...-.. .+. .+++++.||.|....
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 223333455678999999999766666665555554443211 122 588999999997654
No 199
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.54 E-value=2.1e-13 Score=89.84 Aligned_cols=116 Identities=18% Similarity=0.240 Sum_probs=88.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+.+|+++|..||||||+++.+.+... ....+|...++....+ ++..+.++|.-|.. .++++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~~ 76 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRSY 76 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHHH
Confidence 4478999999999999999999999774 2334555667777766 78899999999987 47888
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-c-ccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK-K-IFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~ivv~tk~D~~~ 151 (170)
+++++...|++++|+|.+++...++ ....+.+++.+ + +-.|++++.||.|...
T Consensus 77 W~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 77 WKNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred HHHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 8898999999999999976554444 33444444432 1 2249999999999873
No 200
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.54 E-value=1.3e-13 Score=96.49 Aligned_cols=115 Identities=22% Similarity=0.215 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|.+|+|||||++.+++.......... +.......+.+ .+ ..+.++|+||...+ .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRT---VEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCc---hhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence 4799999999999999999876542211111 11111122333 33 46789999998753 11222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.....+|++++|+|+.+..+... ..++..+.+.... ...|+++|+||+|...
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 34577899999999974433332 2333344443321 2259999999999865
No 201
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.54 E-value=2.9e-13 Score=92.68 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++............ .. ......+. ....+.++||||..++. ....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-EN--YVADIEVDGKQVELALWDTAGQEDYD-----------RLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc-cc--eEEEEEECCEEEEEEEEeCCCchhhh-----------hccc
Confidence 5799999999999999999997654322111111 11 11122221 12357899999986421 1112
Q ss_pred hccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|+++++.-+... ..++..+.+... ..|+++|.||+|+...
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 120 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND 120 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC
Confidence 34578899999999874322222 223333443222 2599999999997654
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.54 E-value=3.2e-13 Score=108.05 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=84.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccc--cc------------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAF--KA------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~--~~------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
-.+|+++|..++|||||+++|+..... .. .....+.|.......+.+ .+..+.++||||+.+|.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence 468999999999999999999853211 00 112345666666666666 77899999999998642
Q ss_pred CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 85 GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
..+......+|++++|+|+.++...+....+..+... . .|.++++||+|....+
T Consensus 83 ----------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~---g--ip~IVviNKiD~~~a~ 136 (607)
T PRK10218 83 ----------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY---G--LKPIVVINKVDRPGAR 136 (607)
T ss_pred ----------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc---C--CCEEEEEECcCCCCCc
Confidence 2223345677999999999877777776666655442 2 4789999999987653
No 203
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.54 E-value=1.4e-13 Score=106.08 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccc--------------c-----------------cCCCCceeEEEeeEEEEeeCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFK--------------A-----------------SAGSSGVTITCEMKTTVLKDG 68 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~-----------------~~~~~~~t~~~~~~~~~~~~~ 68 (170)
.+|+++|+.++|||||++.|+...... . .....+.|.......+.+ .+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 478999999999999999986332110 0 011234555555555655 67
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239 69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..+.++||||+.+ +..........+|++++|+|+.+++..++.+.+..+... +. +++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 7899999999864 222222345678999999999878777766655544443 21 47899999999
Q ss_pred CCCCC
Q 046239 149 YLEDN 153 (170)
Q Consensus 149 ~~~~~ 153 (170)
....+
T Consensus 145 ~~~~~ 149 (406)
T TIGR02034 145 LVDYD 149 (406)
T ss_pred cccch
Confidence 98643
No 204
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.54 E-value=6.4e-14 Score=95.49 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=44.5
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
...+.|+||||+.+...... ..+..+...+|++++|+++....+..+...+....... ...+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence 35589999999986332222 33333447889999999998666666555544444332 13689999985
No 205
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.53 E-value=3.9e-15 Score=101.61 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=71.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
...++|+||+|||||+|+..|........ ............ ....+..+.++|+||+..-. .++...+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T-~tS~e~n~~~~~---~~~~~~~~~lvD~PGH~rlr-------~~~~~~~~ 71 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT-VTSMENNIAYNV---NNSKGKKLRLVDIPGHPRLR-------SKLLDELK 71 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----SSEEEECCG---SSTCGTCECEEEETT-HCCC-------HHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe-eccccCCceEEe---ecCCCCEEEEEECCCcHHHH-------HHHHHhhh
Confidence 46899999999999999999987532211 111011111000 11145689999999998632 12222211
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCCCh-hhHHHHhh
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLEDNE-KTLEDYLG 162 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~~~-~~~~~~~~ 162 (170)
....+.+|+||+|.. .+...-....+.|.+.+.. ....|++|+.||.|.+...+ ..++..++
T Consensus 72 -~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 72 -YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp -HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred -chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 245578999999986 3333445556666665542 22359999999999987643 34444433
No 206
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.53 E-value=1.8e-13 Score=94.27 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+|+++|++|+|||||++.+++............. ......... ....+.++||||..++ .....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN---TFSKIIRYKGQDYHLEIVDTAGQDEY-----------SILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh---hEEEEEEECCEEEEEEEEECCChHhh-----------HHHHH
Confidence 58999999999999999999976532211111110 011112221 1235689999998642 22223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......++++++++.++..+... ..+...+.+.... ...|++++.||+|....
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc
Confidence 34567799999999874332222 2333334333221 22489999999998643
No 207
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.53 E-value=3.4e-13 Score=106.59 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=81.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC---cccccc-----------------CCCCceeEEEeeEEEEeeCCceEEEEe
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR---KAFKAS-----------------AGSSGVTITCEMKTTVLKDGQVVNVID 75 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~---~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~l~D 75 (170)
.....+|+++|..++|||||+++|+.. ...... ....+.+.......+.+ .+..+.++|
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliD 86 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLD 86 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEE
Confidence 345689999999999999999988521 111000 01123444444555666 678899999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
|||+.++ .......+..+|++++|+|+.+++......+++.+... . .|+++++||+|....+
T Consensus 87 TPG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 87 TPGHEDF-----------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR---D--TPIFTFMNKLDRDIRD 148 (527)
T ss_pred CCChhhH-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc---C--CCEEEEEECccccCCC
Confidence 9999753 22222344567999999999877776666666544331 2 4999999999987553
No 208
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.53 E-value=1.3e-13 Score=97.59 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=71.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccccc-----------------CCCCceeEEEeeEEEEee----CCceEEEEeCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTITCEMKTTVLK----DGQVVNVIDTPG 78 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG 78 (170)
++|+++|..|+|||||+++|++....... ....+.+.........+. ....+.++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 36899999999999999999864321110 001122222222222221 235789999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
+.++ ..........+|++++|+|+.+..+......++.+.. .. .|+++|+||+|.+
T Consensus 81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 9863 1122234456799999999986766655444444332 12 5899999999986
No 209
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.53 E-value=2.7e-13 Score=108.08 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------------CCceEEEEeCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------------DGQVVNVIDTPGLF 80 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~ 80 (170)
+.+.|+++|.+++|||||+|+|++........ .+.|.........+. ....+.++||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~--ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREA--GGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccC--CceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 35789999999999999999999875432211 112221111111100 01248899999987
Q ss_pred CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.+ ..+.......+|++++|++++++....+...+..+... . .|+++++||+|+..
T Consensus 81 ~f-----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 81 AF-----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP 135 (590)
T ss_pred hH-----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence 53 22223345678999999999877777776666655432 2 48999999999874
No 210
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.53 E-value=3.4e-13 Score=97.39 Aligned_cols=116 Identities=21% Similarity=0.151 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|..|+|||||++.+++.........+ ........+.+ .+ ..+.+|||+|...+. ....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pT---i~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~-----------~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPT---IEDFHRKLYSI-RGEVYQLDILDTSGNHPFP-----------AMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCC---hhHhEEEEEEE-CCEEEEEEEEECCCChhhh-----------HHHH
Confidence 6899999999999999999865543211111 11111122223 23 457799999986531 1112
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc-------ccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG-------KKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~ivv~tk~D~~~ 151 (170)
.....+|++++|+|+++..+... ..+++++.+... .....|+++|.||+|+..
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 23467799999999985433222 233444433210 112359999999999875
No 211
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.53 E-value=2.7e-13 Score=105.37 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCc---cc--------------------------cccCCCCceeEEEeeEEEEee
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTITCEMKTTVLK 66 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~~ 66 (170)
.++..+++++|..++|||||+..|+... .. .......+.|.......+.+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~- 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence 4667899999999999999998876411 00 00112345666666666666
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhcccccce
Q 046239 67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-------SQEEEAAVHRLPTLFGKKIFDY 139 (170)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~ 139 (170)
.+..+.++||||+.+ +..........+|++++|+|+.++. ..+..+.+..+... +- ++
T Consensus 83 ~~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQ 147 (446)
T ss_pred CCeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---Ce
Confidence 678899999999874 3333334456789999999998654 24555555544442 21 36
Q ss_pred EEEEEEcCCC
Q 046239 140 MIVVFTGGDY 149 (170)
Q Consensus 140 ~ivv~tk~D~ 149 (170)
+++++||+|.
T Consensus 148 iiv~vNKmD~ 157 (446)
T PTZ00141 148 MIVCINKMDD 157 (446)
T ss_pred EEEEEEcccc
Confidence 8899999994
No 212
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.53 E-value=5.2e-13 Score=95.04 Aligned_cols=117 Identities=17% Similarity=0.106 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccc-cCC-----------CCceeEE------------------------EeeEEEE
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAG-----------SSGVTIT------------------------CEMKTTV 64 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~-----------~~~~t~~------------------------~~~~~~~ 64 (170)
+++++|..++|||||++.++....... +.. ..+.|.. .......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 478999999999999999985322110 000 0111110 0001112
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
. .+..+.++||||+..+ ...+...+ ....+|++++|+++.+++...+...+.++...- .|+++|+
T Consensus 81 ~-~~~~i~liDtpG~~~~-------~~~~~~~~--~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~-----ip~ivvv 145 (224)
T cd04165 81 K-SSKLVTFIDLAGHERY-------LKTTLFGL--TGYAPDYAMLVVAANAGIIGMTKEHLGLALALN-----IPVFVVV 145 (224)
T ss_pred e-CCcEEEEEECCCcHHH-------HHHHHHhh--cccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCEEEEE
Confidence 2 4678999999998642 22222111 113689999999998888888888888877642 4899999
Q ss_pred EcCCCCCC
Q 046239 145 TGGDYLED 152 (170)
Q Consensus 145 tk~D~~~~ 152 (170)
||+|+...
T Consensus 146 NK~D~~~~ 153 (224)
T cd04165 146 TKIDLAPA 153 (224)
T ss_pred ECccccCH
Confidence 99998755
No 213
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3e-13 Score=106.89 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=85.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~ 96 (170)
..+++++|.+|+|||||+|+|+|.....+ .-++.|.........+ .+..+.++|.||.++... .++...++++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL-- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence 35699999999999999999999876433 3457888777777777 778899999999997544 3344444443
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...++|+++-|+|+. ++...-.-.++ +.+. + .|+++++|.+|.-+.
T Consensus 78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQ-LlE~---g--~p~ilaLNm~D~A~~ 123 (653)
T COG0370 78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQ-LLEL---G--IPMILALNMIDEAKK 123 (653)
T ss_pred ---hcCCCCEEEEEcccc-hHHHHHHHHHH-HHHc---C--CCeEEEeccHhhHHh
Confidence 367899999999997 33322222222 2232 2 489999999997644
No 214
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.52 E-value=2.6e-13 Score=92.92 Aligned_cols=115 Identities=19% Similarity=0.076 Sum_probs=70.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+++++|++|+|||||++++.+...... ..+ ............. ....+.+|||||...+ ......
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTE-YVP--TAFDNFSVVVLVDGKPVRLQLCDTAGQDEF-----------DKLRPL 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-CCC--ceeeeeeEEEEECCEEEEEEEEECCCChhh-----------cccccc
Confidence 689999999999999999976543221 111 1111111122221 1246788999998653 222233
Q ss_pred ccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..++|++++|+|+.++-+... ..++..+..... ..|++++.||+|+...
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 119 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP---KAPIILVGTQADLRTD 119 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhhccC
Confidence 5678899999999975433332 234444444221 2599999999997643
No 215
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=2.4e-13 Score=93.43 Aligned_cols=116 Identities=19% Similarity=0.083 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
.+++++|.+|+|||||+..++..........+.+... ...+.. .....+.+|||+|...+. ....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~~~-----------~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQEDYN-----------RLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCcccc-----------ccch
Confidence 4789999999999999999987554222122211111 111222 123567899999997642 2222
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+++++++|+|.+++-+.... .++..+.+.. . ..|+++|.||+|+.+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~ 120 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRDD 120 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhccC
Confidence 356788999999999865554442 4555555432 2 2599999999998543
No 216
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.52 E-value=2.2e-13 Score=110.28 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=81.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------c-----------------CCCCceeEEEeeEEE
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------S-----------------AGSSGVTITCEMKTT 63 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~-----------------~~~~~~t~~~~~~~~ 63 (170)
+..+..+|+++|+.++|||||++.|+....... + ....+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 455667899999999999999999986432111 0 011234444444555
Q ss_pred EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239 64 VLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV 143 (170)
Q Consensus 64 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (170)
.+ .+..+.++||||+.+ ....+. .....+|++++|+|+.++...++.+.+..+... +. ++++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-------f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-------YTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-------HHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 55 677899999999753 122222 235678999999999877766655555544433 22 478999
Q ss_pred EEcCCCCCC
Q 046239 144 FTGGDYLED 152 (170)
Q Consensus 144 ~tk~D~~~~ 152 (170)
+||+|..+.
T Consensus 164 vNK~D~~~~ 172 (632)
T PRK05506 164 VNKMDLVDY 172 (632)
T ss_pred EEecccccc
Confidence 999999853
No 217
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.52 E-value=7.6e-14 Score=91.48 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|||||||+++|.+... ....|.... + .+ .++||||-+- +. ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~------~~~KTq~i~-----~-~~---~~IDTPGEyi----E~---~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI------RYKKTQAIE-----Y-YD---NTIDTPGEYI----EN---PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC------CcCccceeE-----e-cc---cEEECChhhe----eC---HHHHHHHHH
Confidence 5899999999999999999998553 112222222 1 11 2599999873 11 122222233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC--CCChhhHHHHhhh
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL--EDNEKTLEDYLGH 163 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~--~~~~~~~~~~~~~ 163 (170)
....+|+++++.|++++.......+... | .+|+|-|+||+|+. +.+-+..+++++.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~~----f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFASM----F----NKPVIGVITKIDLPSDDANIERAKKWLKN 117 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhcc----c----CCCEEEEEECccCccchhhHHHHHHHHHH
Confidence 4457799999999975433332222221 2 14999999999998 3322444445543
No 218
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.52 E-value=3.6e-13 Score=104.48 Aligned_cols=121 Identities=20% Similarity=0.233 Sum_probs=78.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC---Ccccc-----------c---------------cCCCCceeEEEeeEEEEee
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFK-----------A---------------SAGSSGVTITCEMKTTVLK 66 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~-----------~---------------~~~~~~~t~~~~~~~~~~~ 66 (170)
.++..+|+++|..++|||||+++|+. ..... . .....+.|.......+.+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 56678999999999999999999984 21100 0 011235566666666665
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhcccccceEEEE
Q 046239 67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR---FSQEEEAAVHRLPTLFGKKIFDYMIVV 143 (170)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (170)
.+..+.++||||+.+ +..........+|++++|+|++++ ........+... ..++ ..+++++
T Consensus 83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~---~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLG---INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcC---CCeEEEE
Confidence 677899999999753 222222345678999999999865 222222222222 2222 1479999
Q ss_pred EEcCCCCCC
Q 046239 144 FTGGDYLED 152 (170)
Q Consensus 144 ~tk~D~~~~ 152 (170)
+||+|+.+.
T Consensus 148 iNK~Dl~~~ 156 (426)
T TIGR00483 148 INKMDSVNY 156 (426)
T ss_pred EEChhccCc
Confidence 999999753
No 219
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.52 E-value=1.8e-13 Score=90.56 Aligned_cols=115 Identities=21% Similarity=0.137 Sum_probs=68.3
Q ss_pred EEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccC
Q 046239 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKG 102 (170)
Q Consensus 24 lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (170)
++|++|+|||||+|++++............ .......... .....+.++|+||.... .........
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI--IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch--hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHHhc
Confidence 589999999999999998765211111111 1111111111 02567899999998752 111134557
Q ss_pred CccEEEEEEeCCCCCCHHHHHHH--HHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 103 GIHAVLVVFSARNRFSQEEEAAV--HRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 103 ~~~~il~v~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.++++++|+++....+..+...+ ..+.... ....|+++++||+|.....
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEER 118 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEecccccccc
Confidence 78999999999854333332222 1111211 2235999999999987663
No 220
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.51 E-value=1e-13 Score=93.78 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=73.5
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
+|+++|..|+|||||++.+++.........+.+.... ...... .....+.+||++|...+ ......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSY--SKEVSIDGKPVNLEIWDTSGQERF-----------DSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEE--EEEEEETTEEEEEEEEEETTSGGG-----------HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccc--cccccccccccccccccccccccc-----------cccccc
Confidence 5899999999999999999976643332222222222 222222 12345889999997642 112223
Q ss_pred ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
...++|++++|++.+++-+-.. ..++..+...... ..|++++.||.|...
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~--~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPE--DIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTT--TSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccccccccccccccc--cccceeeeccccccc
Confidence 4677899999999974422222 3455555554432 249999999999776
No 221
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=5.2e-13 Score=105.50 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=80.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccc---ccc-----------------CCCCceeEEEeeEEEEeeCCceEEEEeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAF---KAS-----------------AGSSGVTITCEMKTTVLKDGQVVNVIDT 76 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~---~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 76 (170)
....+|+|+|..|+|||||+++|+..... .+. ....+.+.......+.+ .+..+.++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 45679999999999999999998631110 000 00123334444455666 6788999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
||+.++. .+. ...+..+|++++|+|+.++.......+++..... . .|+++++||+|....+
T Consensus 87 PG~~df~-------~~~----~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFS-------EDT----YRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR---D--TPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhH-------HHH----HHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCcccccC
Confidence 9997642 112 2234567999999999877777666666554432 2 4999999999987653
No 222
>PRK13351 elongation factor G; Reviewed
Probab=99.51 E-value=4.3e-13 Score=109.64 Aligned_cols=119 Identities=19% Similarity=0.229 Sum_probs=83.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccc---cc----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAF---KA----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~---~~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (170)
....+|+++|..|+|||||+++|+..... .. + ....+.|.........| .+..+.++||||+.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcH
Confidence 45689999999999999999999743210 00 0 00133455555556666 68899999999997
Q ss_pred CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
++ ......+...+|++++|+|+.++........++.+... . .|+++++||+|....
T Consensus 85 df-----------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DF-----------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGA 140 (687)
T ss_pred HH-----------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCC
Confidence 53 22233445677999999999877777766666655443 2 489999999998876
No 223
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.50 E-value=5e-13 Score=106.85 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=75.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEE--EEee---------------CCceEEEEeCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT--TVLK---------------DGQVVNVIDTPGL 79 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~---------------~~~~~~l~DtpG~ 79 (170)
.+.+.|+++|.+++|||||+++|.+......... +.|....... .... .-..+.++||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g--~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAG--GITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCC--ceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 3457899999999999999999988654322221 1111111110 0000 0012789999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
..|. .........+|++++|+|+++++..+....+..+... . .|+++++||+|..
T Consensus 82 e~f~-----------~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~---~--vpiIvviNK~D~~ 136 (586)
T PRK04004 82 EAFT-----------NLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR---K--TPFVVAANKIDRI 136 (586)
T ss_pred HHHH-----------HHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcCCc
Confidence 7641 1222344677999999999877777777666655442 2 4899999999985
No 224
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=8.3e-13 Score=104.43 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=58.7
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239 69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..++++||||+..+.. ......+.+ ....+|+++||+|+....+..+..+++.+.+. ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 5688999999986422 112223333 35677999999999877888888888877764 211 38999999999
Q ss_pred CCCCC---hhhHHHHhh
Q 046239 149 YLEDN---EKTLEDYLG 162 (170)
Q Consensus 149 ~~~~~---~~~~~~~~~ 162 (170)
..+.. .+.+.++++
T Consensus 301 l~dreeddkE~Lle~V~ 317 (741)
T PRK09866 301 QQDRNSDDADQVRALIS 317 (741)
T ss_pred CCCcccchHHHHHHHHH
Confidence 87521 245666654
No 225
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.50 E-value=1e-12 Score=93.11 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=70.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHH-HhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGN-SILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
......+++++|++|+|||||++ .+.|.... ....+.+............ ....+.++||+|...+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~-~~i~i~~~Dt~g~~~~----------- 71 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEK-KYIPTLGVEVHPLKFYTNC-GPICFNVWDTAGQEKF----------- 71 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceEEEEEEEEECC-eEEEEEEEECCCchhh-----------
Confidence 34455799999999999999996 45554321 1122222221111111111 2356789999997643
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
......+....+++++|++.+++.+... ..++..+.... +. .|++++.||+|..+
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-EN--IPIVLVGNKVDVKD 127 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccCcc
Confidence 1112234456799999999975544332 23333343332 22 48899999999754
No 226
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.49 E-value=4.7e-13 Score=93.74 Aligned_cols=111 Identities=15% Similarity=0.035 Sum_probs=68.9
Q ss_pred EcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCC
Q 046239 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGG 103 (170)
Q Consensus 25 vG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (170)
+|.+|+|||||++.++..........+.+. ......+.+. ....+.+|||+|...+ ..+...++.+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~--~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGV--EVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeE--EEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHhcC
Confidence 699999999999999864432111111111 1111222221 2357889999999753 3333446778
Q ss_pred ccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 104 IHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 104 ~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
++++++|+|+.++.+... ..++..+.+.. . ..|+++|.||+|+..
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~ 113 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVKD 113 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccccc
Confidence 899999999985544433 23444454432 2 249999999999753
No 227
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.6e-13 Score=91.04 Aligned_cols=123 Identities=23% Similarity=0.191 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...+++|+|.+++|||||+-.............+.+..-..+.....- ....+.+|||.|... +..++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~-~~ikfeIWDTAGQER-----------y~sla 71 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD-NTIKFEIWDTAGQER-----------YHSLA 71 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC-cEEEEEEEEcCCccc-----------ccccc
Confidence 457899999999999999966654433221122222111111111110 235677999999985 44555
Q ss_pred HhccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
..++++++++|+|+|+++.-+.. .+.++..|++..+.. .-+.+|.||+|+.....
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~ 127 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERRE 127 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhccc
Confidence 57889999999999998443332 245666666655432 25667999999887443
No 228
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.1e-12 Score=88.86 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=85.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEE--eeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC--EMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
....+++++|..++||||||+..+-..... +...|+.. ....+.+. .-.++.+|||.|+. ++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~----~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE-----------RF 84 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RF 84 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcc----cccceeeeEEEEEEEEEcCcEEEEEEEecccHH-----------HH
Confidence 334789999999999999999998654322 22223222 22333331 23467899999997 46
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+.++..+.+.+.++++|+|+.+.-+.++ .++++.+....+.. ...+++|.||.|+.+..
T Consensus 85 rslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 85 RSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDKR 144 (221)
T ss_pred hhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccchh
Confidence 7778888899999999999986665554 56666666655442 13789999999998774
No 229
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.48 E-value=2e-12 Score=92.26 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
....++..|+++|++|+|||||+|.|++.......... .++. .. ... .+..+.++||||.. ..+
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~-~g~i--~i--~~~-~~~~i~~vDtPg~~----------~~~ 97 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDI-KGPI--TV--VTG-KKRRLTFIECPNDI----------NAM 97 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccc-cccE--EE--Eec-CCceEEEEeCCchH----------HHH
Confidence 34677889999999999999999999875322111111 1111 11 111 56788999999753 233
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
...+ ..+|++++++|+...+...+..+++.+... + .| +++|+||+|.+..
T Consensus 98 l~~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~---g--~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 98 IDIA----KVADLVLLLIDASFGFEMETFEFLNILQVH---G--FPRVMGVLTHLDLFKK 148 (225)
T ss_pred HHHH----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc---C--CCeEEEEEeccccCCc
Confidence 3332 456999999999877887777777766553 1 25 5569999998854
No 230
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.48 E-value=4.9e-13 Score=95.08 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|+.||||||..+.+.....+... ...+.|.......+.......+.+||+||...+.... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 5899999999999999999977655442 3445666666566654356689999999998652210 00111223
Q ss_pred cCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..++++++||+|+. +.+...-..+.+.+..........++.|++.|+|.+.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 57789999999997 44333323333333333322333489999999999866
No 231
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=9.8e-13 Score=90.29 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=87.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
+...-.+++++|.+|+|||+++-.++..........+.+ +......+.+. ....+++|||.|... +
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--IDFk~kti~l~g~~i~lQiWDtaGQer-----------f 74 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--IDFKIKTIELDGKKIKLQIWDTAGQER-----------F 74 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--EEEEEEEEEeCCeEEEEEEEEcccchh-----------H
Confidence 556678999999999999999988886554333222222 22333344431 234688999999984 5
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......++++++.+++|+|+.+.-+-+ ...+++.+.+...+.+ +.++|.||+|.-..
T Consensus 75 ~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 75 RTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK 132 (207)
T ss_pred HHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc
Confidence 666677888999999999997444443 2458888888776654 99999999997663
No 232
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.47 E-value=6.7e-13 Score=102.31 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEE--------------e-----------eCCce
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTV--------------L-----------KDGQV 70 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~--------------~-----------~~~~~ 70 (170)
.+..+|+++|..++|||||+++|++...... .....+.|......... . .....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3567899999999999999999987532110 11112233222211100 0 01357
Q ss_pred EEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCC
Q 046239 71 VNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDY 149 (170)
Q Consensus 71 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~ 149 (170)
+.++||||+.+ +...+......+|++++|+|++++. ..+..+.+..+.. ++. +++++++||+|+
T Consensus 82 i~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl 146 (406)
T TIGR03680 82 VSFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDL 146 (406)
T ss_pred EEEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEcccc
Confidence 89999999864 2222333345679999999998665 4445555554432 221 479999999998
Q ss_pred CCC
Q 046239 150 LED 152 (170)
Q Consensus 150 ~~~ 152 (170)
...
T Consensus 147 ~~~ 149 (406)
T TIGR03680 147 VSK 149 (406)
T ss_pred CCH
Confidence 865
No 233
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.47 E-value=1.5e-12 Score=104.39 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccc----c---------CCCCceeEEEeeEEEEee----CCceEEEEeCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----S---------AGSSGVTITCEMKTTVLK----DGQVVNVIDTPGLFD 81 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~---------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~~~ 81 (170)
-++|+++|..++|||||+++|+....... + ....+.|.........|. ....+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 36899999999999999999976421100 0 011244544443334331 125689999999986
Q ss_pred CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
| ...+..+...+|++++|+|++++.+.++...+....+ .. .|+++|+||+|+...
T Consensus 83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA 137 (595)
T ss_pred H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc
Confidence 3 2222334556799999999987777666544433322 12 489999999998654
No 234
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.2e-12 Score=86.08 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=84.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...++.++|.+|+|||.|+...+..........+.+..-......++- ....+.+|||.|+.. +.+..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~-k~IKlqiwDtaGqe~-----------frsv~ 72 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDG-KQIKLQIWDTAGQES-----------FRSVT 72 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcC-ceEEEEEEecCCcHH-----------HHHHH
Confidence 456889999999999999999997765444343433333333344433 456789999999984 56666
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+.+++.+..+|+|+|++.+-+... ..++..+++...+. ..++++.||+|+...
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhcc
Confidence 678889999999999985544443 35556666654222 267889999997654
No 235
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=1.5e-12 Score=90.38 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+++++|++|+|||||++.++......... . ...........+ .+ ..+.++||+|...+....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~--t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~----------- 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYH-P--TVFENYVTDCRV-DGKPVQLALWDTAGQEEYERLR----------- 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC-C--cccceEEEEEEE-CCEEEEEEEEECCCChhccccc-----------
Confidence 479999999999999999998543322111 1 111111112222 22 346789999986532110
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
......+++++++++++..-+... ..++..+..... ..|+++|.||+|+..
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~~ 119 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLRQ 119 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhhh
Confidence 123467899999999874322222 234555544332 259999999999754
No 236
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.3e-12 Score=83.83 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=85.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
-++|+++|..|+|||.|++..+....+.+...+.+..-......+.- .+..+.+|||.|... +++...
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~g-ekiklqiwdtagqer-----------frsitq 74 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNG-EKIKLQIWDTAGQER-----------FRSITQ 74 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECC-eEEEEEEeeccchHH-----------HHHHHH
Confidence 46899999999999999999987655444333333333333233322 356789999999974 566666
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.+++.+|+++++.|++...+... .+++..+.+....++ -.|+|.||.|+-+..
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~drr 128 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADRR 128 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhhh
Confidence 67888899999999985555543 567777777765554 568999999977653
No 237
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.45 E-value=1.8e-12 Score=100.03 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=76.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEe--------------e-----------CCc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVL--------------K-----------DGQ 69 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--------------~-----------~~~ 69 (170)
.++..+|+++|..++|||||+.+|++.... .......+.|.........+ . ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456689999999999999999999875211 11122234444332211111 0 025
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239 70 VVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 70 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
.+.++||||+.+ +..........+|++++|+|+.++. .......+..+.. .+ .+++++|+||+|
T Consensus 86 ~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~---i~~iiVVlNK~D 150 (411)
T PRK04000 86 RVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IG---IKNIVIVQNKID 150 (411)
T ss_pred EEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cC---CCcEEEEEEeec
Confidence 789999999753 2222223345679999999998665 4555555554433 22 137899999999
Q ss_pred CCCC
Q 046239 149 YLED 152 (170)
Q Consensus 149 ~~~~ 152 (170)
+.+.
T Consensus 151 l~~~ 154 (411)
T PRK04000 151 LVSK 154 (411)
T ss_pred cccc
Confidence 9865
No 238
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.45 E-value=1.1e-12 Score=86.33 Aligned_cols=122 Identities=14% Similarity=0.047 Sum_probs=79.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|.+|+|||||+-+.+....-+....+.+..-......++- ....+.+|||.|... ++.
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqEr-----------FRt 75 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQER-----------FRT 75 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHh-----------hhc
Confidence 34458999999999999999988876544222222334443344344432 455788999999985 444
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
+...+++++..+|+|.|++.+-+.... .++.++.-.-. ....-.++|.||.|+-
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-n~diikmlVgNKiDke 130 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYST-NPDIIKMLVGNKIDKE 130 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcC-CccHhHhhhcccccch
Confidence 445678899999999999755444332 34444444322 2223458899999965
No 239
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.44 E-value=5.7e-13 Score=101.80 Aligned_cols=131 Identities=22% Similarity=0.210 Sum_probs=91.1
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee-EEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM-KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
+.-.+..+++|+|.+++|||||+|.++.... ...+...|+..-. ..+++ ....|+++||||+.+.... +....+
T Consensus 163 sIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dy-kYlrwQViDTPGILD~plE-drN~IE 237 (620)
T KOG1490|consen 163 AIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDY-KYLRWQVIDTPGILDRPEE-DRNIIE 237 (620)
T ss_pred CCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhh-heeeeeecCCccccCcchh-hhhHHH
Confidence 3455667899999999999999999987553 3445555555443 33334 6789999999999974332 333344
Q ss_pred HHHHHHhccCCccEEEEEEeCC--CCCCHH-HHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSAR--NRFSQE-EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~--~~~~~~-~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+......+ +-..++||++|++ .+.+-. ...+.+.+..+|.++ ++|+|+||+|.+...
T Consensus 238 mqsITALA-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 238 MQIITALA-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRPE 297 (620)
T ss_pred HHHHHHHH-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCcc
Confidence 44433333 3335689999987 344544 467888899988765 899999999988663
No 240
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.43 E-value=3.7e-12 Score=102.24 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccc----c---------CCCCceeEEEeeEEEEee----CCceEEEEeCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA----S---------AGSSGVTITCEMKTTVLK----DGQVVNVIDTPGL 79 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~---------~~~~~~t~~~~~~~~~~~----~~~~~~l~DtpG~ 79 (170)
..-++++++|..++|||||+.+|+....... + ....+.|.........|. ....+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3457899999999999999999875321100 0 112244444333333331 2457899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+|. .+ +..+...+|++++|+|+.++.+..+...+....+ .. .|+++|+||+|+...
T Consensus 85 ~dF~-------~~----v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a 141 (600)
T PRK05433 85 VDFS-------YE----VSRSLAACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHH-------HH----HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCcc
Confidence 8631 12 2234456799999999987777666555444332 12 489999999998654
No 241
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.8e-12 Score=88.86 Aligned_cols=123 Identities=17% Similarity=0.086 Sum_probs=85.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....-++|+++|.+|+|||-|+...+..........+.+.........++- +-....+|||.|+.. ++
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQER-----------yr 77 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQER-----------YR 77 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhh-----------hc
Confidence 344557899999999999999999887665444344444333333222321 234678999999985 44
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.....+++++.++++|+|++.+.+.+. .+++++|++..... .++++|.||+|+-.
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNH 133 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhh
Confidence 455567899999999999986655553 45566666654333 48899999999865
No 242
>PTZ00416 elongation factor 2; Provisional
Probab=99.43 E-value=1.8e-12 Score=107.61 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=81.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cCCCCceeEEEeeEEEEee---------CCceEE
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTITCEMKTTVLK---------DGQVVN 72 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~---------~~~~~~ 72 (170)
...-++|+++|..++|||||+++|+....... .....+.|.........|. .+..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 45567999999999999999999986321110 0111223333222233331 145689
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
++||||+.++ ..........+|++++|+|+.+++..++...++.+.+. + .|+++++||+|+.
T Consensus 96 liDtPG~~~f-----------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~---~--~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDF-----------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE---R--IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhH-----------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc---C--CCEEEEEEChhhh
Confidence 9999999862 22234456778999999999988888888777766653 2 4899999999987
No 243
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.43 E-value=5.1e-12 Score=89.60 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|+.|+|||||++++.+........... .................+.+|||+|+.+ +...+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI-GNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCce-eeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHHHHH
Confidence 799999999999999999999876543222111 1111111111110134588999999984 4455666
Q ss_pred ccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 100 AKGGIHAVLVVFSARN--RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+..++++++++++... ........+...+...... ..|+++|.||+|+....
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPD--DVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCC--CceEEEEecccccccch
Confidence 7789999999999863 2222223444444554322 24999999999998773
No 244
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.42 E-value=1.9e-12 Score=94.32 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=64.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEE-EeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTIT-CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..-.++++|++.+|||||+|.|++...... ..+.|+. +...-..+ ++-.++++|+||+.+........+.+.+..
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva---~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv 137 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVA---DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSV 137 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcccc---ccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeee
Confidence 345799999999999999999999765322 2233333 33333334 889999999999988766666556666644
Q ss_pred HHhccCCccEEEEEEeCC
Q 046239 97 IGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~ 114 (170)
.+++|++++|+|+.
T Consensus 138 ----~R~ADlIiiVld~~ 151 (365)
T COG1163 138 ----ARNADLIIIVLDVF 151 (365)
T ss_pred ----eccCCEEEEEEecC
Confidence 45669999999986
No 245
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.41 E-value=6.5e-12 Score=84.90 Aligned_cols=108 Identities=23% Similarity=0.208 Sum_probs=67.4
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
+|+++|.+|+|||||++.++....... ..+.... . ...+.+ .+ ..+.++||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~--~-~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGR--F-KKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccc--e-EEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 689999999999999988765432211 1111111 1 122333 33 45789999999631
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.+...+|++++|+|.+++-+... ..+++.+..... ....|+++|.||+|+.
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 12356799999999986554444 345555544321 1224899999999964
No 246
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.40 E-value=7.3e-12 Score=100.46 Aligned_cols=114 Identities=22% Similarity=0.232 Sum_probs=72.4
Q ss_pred cCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCcc
Q 046239 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIH 105 (170)
Q Consensus 26 G~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (170)
|.+|+|||||+|+++|.... . ...++.|.........+ .+..+.++||||+.++...... +++.... .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-V-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSLE--EEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-e-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccchH--HHHHHHH-HhhcCCC
Confidence 88999999999999987642 2 22445666555555655 6678999999999876432211 1111111 1235789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 106 AVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 106 ~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
++++|+|+++ ++. .......+.+ .. .|+++++||+|+.+.
T Consensus 75 vvI~VvDat~-ler-~l~l~~ql~~---~~--~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 75 LVVNVVDASN-LER-NLYLTLQLLE---LG--IPMILALNLVDEAEK 114 (591)
T ss_pred EEEEEecCCc-chh-hHHHHHHHHh---cC--CCEEEEEehhHHHHh
Confidence 9999999873 322 2222222222 22 599999999998644
No 247
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.3e-11 Score=92.69 Aligned_cols=133 Identities=20% Similarity=0.270 Sum_probs=91.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc---cc--------------------------cccCCCCceeEEEeeEEEEe
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK---AF--------------------------KASAGSSGVTITCEMKTTVL 65 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~--------------------------~~~~~~~~~t~~~~~~~~~~ 65 (170)
..++..+++++|...+|||||+-.|+-.. .. ..+.+..+.|.......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 45778899999999999999997765221 00 00112356676666666665
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccc
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFD 138 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~ 138 (170)
....+.++|+||+-+ ....++ ....++|+.++|+++..+ ...+.++.+- |...+|- .
T Consensus 83 -~k~~~tIiDaPGHrd-------FvknmI----tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi---~ 146 (428)
T COG5256 83 -DKYNFTIIDAPGHRD-------FVKNMI----TGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGI---K 146 (428)
T ss_pred -CCceEEEeeCCchHH-------HHHHhh----cchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCC---c
Confidence 667899999999764 233333 455777999999999754 3444444332 3333442 4
Q ss_pred eEEEEEEcCCCCCCChhhHHHHhhh
Q 046239 139 YMIVVFTGGDYLEDNEKTLEDYLGH 163 (170)
Q Consensus 139 ~~ivv~tk~D~~~~~~~~~~~~~~~ 163 (170)
.+||++||+|.+..+++++++...+
T Consensus 147 ~lIVavNKMD~v~wde~rf~ei~~~ 171 (428)
T COG5256 147 QLIVAVNKMDLVSWDEERFEEIVSE 171 (428)
T ss_pred eEEEEEEcccccccCHHHHHHHHHH
Confidence 8999999999999988888877654
No 248
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.37 E-value=1.4e-11 Score=95.95 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=78.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc---c-----------c---------------ccCCCCceeEEEeeEEEEe
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA---F-----------K---------------ASAGSSGVTITCEMKTTVL 65 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~---~-----------~---------------~~~~~~~~t~~~~~~~~~~ 65 (170)
..++..+++++|..++|||||+.+|+.... . . ......+.|.......+.+
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 356778999999999999999987752110 0 0 0122345666666666666
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhcccccc
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-FS------QEEEAAVHRLPTLFGKKIFD 138 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~~~~l~~~~~~~~~~ 138 (170)
.+..+.++||||+.+ +..........+|++++|+|+.++ +. .+..+.+..+.. ++- +
T Consensus 83 -~~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~ 146 (447)
T PLN00043 83 -TKYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---K 146 (447)
T ss_pred -CCEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---C
Confidence 678899999999974 333334456788999999999754 22 233333333222 221 3
Q ss_pred eEEEEEEcCCCC
Q 046239 139 YMIVVFTGGDYL 150 (170)
Q Consensus 139 ~~ivv~tk~D~~ 150 (170)
++++++||+|..
T Consensus 147 ~iIV~vNKmD~~ 158 (447)
T PLN00043 147 QMICCCNKMDAT 158 (447)
T ss_pred cEEEEEEcccCC
Confidence 689999999976
No 249
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.37 E-value=1.1e-12 Score=107.45 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=78.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc--------------ccccCCCCceeEEEee----EEEEeeCCceEEEEeC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTITCEM----KTTVLKDGQVVNVIDT 76 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~--------------~~~~~~~~~~t~~~~~----~~~~~~~~~~~~l~Dt 76 (170)
......+|+++|..++|||||++.|+.... ........+.|..... ..+.+ .+..+.++||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDT 93 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDT 93 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeC
Confidence 445568999999999999999999863210 0000111223332221 12334 5678999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
||+.++. .+ .......+|++++|+|+.++....+...++.+.+. . .|.++++||+|...
T Consensus 94 PG~~~f~-------~~----~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~ 152 (720)
T TIGR00490 94 PGHVDFG-------GD----VTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLI 152 (720)
T ss_pred CCccccH-------HH----HHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhccc
Confidence 9998742 12 22345667999999999877777766666554332 2 37789999999864
No 250
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.35 E-value=4e-12 Score=105.74 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--------------CCCCceeEEEeeEEEEee--------------
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTITCEMKTTVLK-------------- 66 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~-------------- 66 (170)
....-++|+++|+.++|||||+.+|+........ ....+.|.........|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4556689999999999999999998754321000 011223333322333331
Q ss_pred -CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239 67 -DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT 145 (170)
Q Consensus 67 -~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (170)
.+..+.++||||+.+| ..........+|++++|+|+.+++.......++.+... + .|+++++|
T Consensus 95 ~~~~~inliDtPGh~dF-----------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~--~p~i~~iN 158 (843)
T PLN00116 95 GNEYLINLIDSPGHVDF-----------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---R--IRPVLTVN 158 (843)
T ss_pred CCceEEEEECCCCHHHH-----------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---C--CCEEEEEE
Confidence 1456789999999862 22223445677999999999888888887777766553 2 48999999
Q ss_pred cCCCC
Q 046239 146 GGDYL 150 (170)
Q Consensus 146 k~D~~ 150 (170)
|+|.+
T Consensus 159 K~D~~ 163 (843)
T PLN00116 159 KMDRC 163 (843)
T ss_pred CCccc
Confidence 99988
No 251
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.2e-12 Score=87.37 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
..++++|+++||||+|+-.|...... ..-.........+.+ +.....++|.||+.. ....+.....-
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-----~TvtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-----GTVTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-----CeeeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 67899999999999999666543211 111112222222333 456689999999985 22333332221
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCCChhhHHHHhhhcCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLEDNEKTLEDYLGHECPKP 168 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~~~~~~~~~~~~~~~~~ 168 (170)
...+.+++||+|.. -+...-+...+.+...+.+ .-..|+++..||.|+... .-.+.++++.+++
T Consensus 106 -~~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA---kt~~~Ir~~LEkE 173 (238)
T KOG0090|consen 106 -NYSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA---KTAEKIRQQLEKE 173 (238)
T ss_pred -cccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc---CcHHHHHHHHHHH
Confidence 13678899999986 5555555555665555533 223489999999999987 3444444444433
No 252
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=79.56 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
...+|+|.+|+|||+|+-.............+.+. ...+...+.. ....++||||.|.. .++.+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv--DfkirTv~i~G~~VkLqIwDtAGqE-----------rFrtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV--DFKIRTVDINGDRVKLQIWDTAGQE-----------RFRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeee--eEEEEEeecCCcEEEEEEeecccHH-----------HHHHHHH
Confidence 35688999999999999777654331111222222 2233344441 23568899999997 3556666
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.++.++|++++|+|+...-+... +++++.+++.. ..-|-++|.||+|..+.
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceecccCCCCccc
Confidence 78899999999999975444333 45555555543 23488999999998755
No 253
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.31 E-value=1.8e-11 Score=89.19 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=57.7
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC----------------ceEEEEeCCCCCCCCCC
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG----------------QVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~ 85 (170)
++++|.+++|||||+|+|++..... ...+..|.........+... ..+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~--~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc--ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5899999999999999999977522 12233443444333333111 14899999999875544
Q ss_pred chHHHHHHHHHHHhccCCccEEEEEEeC
Q 046239 86 SEFVGKEIVKCIGLAKGGIHAVLVVFSA 113 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~ 113 (170)
....+.+++..+ .++|++++|++.
T Consensus 79 ~~glg~~fL~~i----~~~D~li~VV~~ 102 (274)
T cd01900 79 GEGLGNKFLSHI----REVDAIAHVVRC 102 (274)
T ss_pred hhHHHHHHHHHH----HhCCEEEEEEeC
Confidence 445555665544 456999999986
No 254
>PTZ00258 GTP-binding protein; Provisional
Probab=99.31 E-value=3e-11 Score=91.86 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=62.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~ 79 (170)
......++|+|.+++|||||+|+|++..... ...+.+|.........+.. ...+.++||||+
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v--~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL 95 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPA--ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL 95 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccc--cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence 4666789999999999999999999876422 2223444444443333311 124899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (170)
..........+.+++..+ ..+|++++|++..
T Consensus 96 v~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 96 VKGASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred CcCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 865444444555555444 4569999999973
No 255
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=7e-11 Score=82.52 Aligned_cols=116 Identities=17% Similarity=0.052 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCCHHHHHH-HhhCCcccccc-CCCCceeEE----EeeE-------EEEe-eCCceEEEEeCCCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS-AGSSGVTIT----CEMK-------TTVL-KDGQVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin-~l~~~~~~~~~-~~~~~~t~~----~~~~-------~~~~-~~~~~~~l~DtpG~~~~~~~ 85 (170)
.+|+++|.+|+|||||+. .+++....... ......|.. .... .... .....+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 589999999999999995 55543211110 001111211 0000 0011 12356889999998631
Q ss_pred chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+ ...++.++|++++|+|++++.+.... .+++.+.... . ..|+++|.||+|+.+
T Consensus 80 -------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLRY 134 (195)
T ss_pred -------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence 1 11356889999999999855444433 3455555432 2 249999999999754
No 256
>PRK12740 elongation factor G; Reviewed
Probab=99.30 E-value=6.2e-11 Score=96.85 Aligned_cols=112 Identities=22% Similarity=0.262 Sum_probs=75.9
Q ss_pred EcCCCCCHHHHHHHhhCCccc---c----cc---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchH
Q 046239 25 LGRTGNGKSATGNSILGRKAF---K----AS---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF 88 (170)
Q Consensus 25 vG~~gsGKSTlin~l~~~~~~---~----~~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 88 (170)
+|+.++|||||++.|+..... . .+ ....+.|.......+.+ .+..+.++||||+.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 599999999999999433211 0 00 01134555555566666 7889999999999752
Q ss_pred HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
...+......+|++++|+|+...........+..+... + .|+++|+||+|.....
T Consensus 74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~---~--~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY---G--VPRIIFVNKMDRAGAD 128 (668)
T ss_pred -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence 11222334567999999999877776666666655442 2 4899999999988653
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.29 E-value=4.1e-11 Score=93.29 Aligned_cols=123 Identities=14% Similarity=0.189 Sum_probs=77.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEE---------------Eee------------
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTT---------------VLK------------ 66 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~---------------~~~------------ 66 (170)
+..+..+|+++|.-..|||||+.+|+|.....- +....+.|........ .++
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence 456778999999999999999999998653211 1112222322211110 000
Q ss_pred -----CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceE
Q 046239 67 -----DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-FSQEEEAAVHRLPTLFGKKIFDYM 140 (170)
Q Consensus 67 -----~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 140 (170)
....+.++|+||+.+ +.+.+......+|++++|+++.++ ...+..+.+..+ +.++. +++
T Consensus 110 ~~~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~i 174 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHI 174 (460)
T ss_pred cccccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcE
Confidence 124689999999853 333333445677999999999864 455554444433 33332 479
Q ss_pred EEEEEcCCCCCC
Q 046239 141 IVVFTGGDYLED 152 (170)
Q Consensus 141 ivv~tk~D~~~~ 152 (170)
++++||+|+.+.
T Consensus 175 IVvlNKiDlv~~ 186 (460)
T PTZ00327 175 IILQNKIDLVKE 186 (460)
T ss_pred EEEEecccccCH
Confidence 999999998854
No 258
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=8.6e-11 Score=83.25 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++++||||||||||+|.+.|...+..|
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999999887766
No 259
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.28 E-value=6.9e-12 Score=103.08 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=78.8
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc----c----------CCCCceeEEEeeEEEEe--e-CCceEEEEe
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA----S----------AGSSGVTITCEMKTTVL--K-DGQVVNVID 75 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~--~-~~~~~~l~D 75 (170)
.....+-++|+++|+.++|||||+.+|+....... + ....+.|.........| . .+..+.++|
T Consensus 14 ~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liD 93 (731)
T PRK07560 14 MKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLID 93 (731)
T ss_pred hhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEc
Confidence 34455668999999999999999999874321110 0 00112222222222222 1 245688999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
|||+.+| ..........+|++++|+|+.++...+....++...+. + .|.++++||+|..
T Consensus 94 tPG~~df-----------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~--~~~iv~iNK~D~~ 152 (731)
T PRK07560 94 TPGHVDF-----------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---R--VKPVLFINKVDRL 152 (731)
T ss_pred CCCccCh-----------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---C--CCeEEEEECchhh
Confidence 9999874 12223344566999999999888887777777764443 2 3679999999976
No 260
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.27 E-value=6.7e-11 Score=89.05 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC----------------ceEEEEeCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 83 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~ 83 (170)
.+++++|.+++|||||+|+|++..... ...+.+|.........+... ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v--~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee--cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 589999999999999999999977321 12233443333333322111 248999999998754
Q ss_pred CCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (170)
......+.+++..+ ..+|++++|+++.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 44444555555443 4669999999973
No 261
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.1e-10 Score=76.33 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=74.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
-.+++++|+.|+|||.|+........-+...-+.+..-...+..+-. +...+.+|||.|.. +++...+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQE-----------rFRSVtR 76 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQE-----------RFRSVTR 76 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccHH-----------HHHHHHH
Confidence 36899999999999999988775543222111122222222222211 33568899999997 5778888
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.+++++...++|.|+..+-+... ..++...+.+.+.. .-++++.||.|+-...
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPER 130 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhh
Confidence 89999999999999974433332 22333333332222 1356667888865553
No 262
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4.5e-10 Score=72.52 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=89.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+.+|+.+|-.++||||++..|+-.... ..-.|.......+.+ ....+.++|.-|.. .++.+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-----~~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-----TTIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCc-----ccccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHH
Confidence 44689999999999999999888743321 112233344455555 67788999988886 57888
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCCC-hhhHHHHhhh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLEDN-EKTLEDYLGH 163 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~-~~~~~~~~~~ 163 (170)
++.++.+..++|||+|..++ ..-.+.-+++...++.+ ...+++|+.||-|+.+.. ++++.++++-
T Consensus 78 WrhYy~gtqglIFV~Dsa~~--dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL 145 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR--DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL 145 (180)
T ss_pred HHhhccCCceEEEEEeccch--hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc
Confidence 88899999999999998754 22223334455555433 223789999999998663 3777777764
No 263
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=4.7e-10 Score=86.83 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...+.+.++|.-.-|||||+..|-+......+. .+.|....-+.+.+. ....+.|+||||+..|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea--GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt----------- 69 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA--GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT----------- 69 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccC--CceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH-----------
Confidence 356899999999999999999999877654433 345655566666653 24789999999998752
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
.+=.+-..-.|.++||+++++++.++..+.++.++.. + -|++|.+||+|+.+.++
T Consensus 70 ~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~--vP~iVAiNKiDk~~~np 124 (509)
T COG0532 70 AMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---G--VPIVVAINKIDKPEANP 124 (509)
T ss_pred HHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---C--CCEEEEEecccCCCCCH
Confidence 1112334556899999999999999998888877775 3 49999999999997754
No 264
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.1e-10 Score=86.65 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=91.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEee--E----------------EEEe----------
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEM--K----------------TTVL---------- 65 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~--~----------------~~~~---------- 65 (170)
+.-...+.|+++|+...||||||+-|+....+.....+.+.|..... . ...+
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 44566789999999999999999999988765332222222211110 0 0000
Q ss_pred ---------eC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhc
Q 046239 66 ---------KD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFG 133 (170)
Q Consensus 66 ---------~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~ 133 (170)
++ -..+.++||||+.+.....-..+..+-....++..++|.|++++|+. -.++.+..+.+..++.
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--- 209 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--- 209 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---
Confidence 00 03489999999998766665667778888888999999999999986 2233344455544443
Q ss_pred ccccceEEEEEEcCCCCCC
Q 046239 134 KKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 134 ~~~~~~~ivv~tk~D~~~~ 152 (170)
.. ..+-||+||+|+++.
T Consensus 210 ~E--dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 210 HE--DKIRVVLNKADQVDT 226 (532)
T ss_pred Cc--ceeEEEeccccccCH
Confidence 33 489999999999987
No 265
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.24 E-value=4.4e-11 Score=80.49 Aligned_cols=123 Identities=15% Similarity=0.050 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.-+++.++|.+|+|||||+|.+...........+.+..-......++- ....+++|||.|...| .++-
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQERF-----------qsLg 75 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQERF-----------QSLG 75 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHHHh-----------hhcc
Confidence 347899999999999999999987654333222222222222222221 3456889999999854 4444
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
..+++++|+.+++++++..-+.... .+-+.+....... ---|+||+.||.|.-..
T Consensus 76 ~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 76 VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred cceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 5688999999999998743322221 2222222222211 11289999999997553
No 266
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=4.2e-10 Score=87.28 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=94.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...++++-++|.-.-|||||+.+|-+...+..+ ..+.|....-+...++.+..++|+||||+-.| ..
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E--~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-----------~a 216 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE--AGGITQHIGAFTVTLPSGKSITFLDTPGHAAF-----------SA 216 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhh--cCCccceeceEEEecCCCCEEEEecCCcHHHH-----------HH
Confidence 346789999999999999999999987765543 33566666677777778899999999999853 22
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
+-.+...-.|.+++|+.++++.-++..+.+...++- ..|+++.+||+|+...+.
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~p 270 (683)
T KOG1145|consen 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANP 270 (683)
T ss_pred HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCH
Confidence 223445566889999999989888887777655553 259999999999998754
No 267
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.4e-10 Score=92.54 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCc---ccccc-------------CCCCceeEEEeeEEEEeeCC-ceEEEEeCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRK---AFKAS-------------AGSSGVTITCEMKTTVLKDG-QVVNVIDTPG 78 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~~~~-------------~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG 78 (170)
...-++|+++|+..+|||||..+|+-.. ...+. ....+.|+........| .+ ..+.++||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 4566899999999999999997765322 11111 11246777777777777 64 8999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+-+|.. +.. +.++-.|++++|+++.++...+....++...+. . .|.++++||+|.+..+
T Consensus 86 HVDFt~-------EV~----rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~--vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 86 HVDFTI-------EVE----RSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---G--VPRILFVNKMDRLGAD 144 (697)
T ss_pred ccccHH-------HHH----HHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---C--CCeEEEEECccccccC
Confidence 998642 222 233445999999999989999988888877775 3 4999999999998763
No 268
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=5.6e-11 Score=81.89 Aligned_cols=130 Identities=16% Similarity=0.073 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeE--EEEeeCCceEEEEeCCCCCCCCCCchH----
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMK--TTVLKDGQVVNVIDTPGLFDSSAGSEF---- 88 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~~~---- 88 (170)
...++..++++|+||+|||||++.|+|...+..|............. ...+ .....++.+.|.+.......+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL-RRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH-hhcEEEEecCCccCCCCCHHHheeec
Confidence 34578899999999999999999999987654442211111000000 0011 2344556666665532111111
Q ss_pred ---HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCC
Q 046239 89 ---VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 89 ---~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
-..+.+..++....+++++++--+ ...++..... +.+.+.+...+ ...+++++||..
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP-~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~ 161 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEP-TSALDPITRREVRALLKSLQAQ--LGITVVLVTHDL 161 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCC-cccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCH
Confidence 133445555666778877666333 3366665433 33444443221 026888888863
No 269
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.23 E-value=3.9e-10 Score=85.52 Aligned_cols=129 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC----cccccc----------CCCCc---eeEEEee---EEEEeeC----CceEE
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR----KAFKAS----------AGSSG---VTITCEM---KTTVLKD----GQVVN 72 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~----~~~~~~----------~~~~~---~t~~~~~---~~~~~~~----~~~~~ 72 (170)
.....|+++||-++|||||||++++. ...+.. ....| .|+.+.. ....... ...++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34467899999999999999999998 221000 11223 3443333 2222212 26899
Q ss_pred EEeCCCCCCCCCCchHHHHH--------------HHHHH-----HhccCCccEEEEEE-eCC------CCCCHHHHHHHH
Q 046239 73 VIDTPGLFDSSAGSEFVGKE--------------IVKCI-----GLAKGGIHAVLVVF-SAR------NRFSQEEEAAVH 126 (170)
Q Consensus 73 l~DtpG~~~~~~~~~~~~~~--------------~~~~~-----~~~~~~~~~il~v~-~~~------~~~~~~~~~~~~ 126 (170)
++||+|+.........-... |...+ +....+.+..++|. |.+ +.+...+.++++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998643322211111 11111 11233678888887 653 356666778888
Q ss_pred HHHHHhcccccceEEEEEEcCCCC
Q 046239 127 RLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 127 ~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.|++.- +|+++|+|+.|-.
T Consensus 175 eLk~~~-----kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKELN-----KPFIILLNSTHPY 193 (492)
T ss_pred HHHhcC-----CCEEEEEECcCCC
Confidence 887763 6999999999944
No 270
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.7e-10 Score=89.92 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=83.0
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH
Q 046239 11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 89 (170)
+......++.+++++||+|+||||||++|.....-.. .....+.|... ...+++.++.+|.-.
T Consensus 61 rtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs-------gK~RRiTflEcp~Dl--------- 124 (1077)
T COG5192 61 RTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS-------GKTRRITFLECPSDL--------- 124 (1077)
T ss_pred CCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee-------cceeEEEEEeChHHH---------
Confidence 3445566778888999999999999999987543211 11222223222 156788999988322
Q ss_pred HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.+++..+..+ |++|++++.+-++..+..++++.+... ....++-|+||.|++...
T Consensus 125 -~~miDvaKIa----DLVlLlIdgnfGfEMETmEFLnil~~H----GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 125 -HQMIDVAKIA----DLVLLLIDGNFGFEMETMEFLNILISH----GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred -HHHHhHHHhh----heeEEEeccccCceehHHHHHHHHhhc----CCCceEEEEeecccccCh
Confidence 3566655554 999999999888888888888877664 235799999999998763
No 271
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.20 E-value=7.5e-11 Score=79.61 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
...+++++|.+|+|||||+|+|.+......+.. ++.|..... +. -...++++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~--~~--~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQY--IT--LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEE--EE--cCCCEEEEECcCC
Confidence 456889999999999999999999766444332 344544332 22 2356899999995
No 272
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=99.20 E-value=2.2e-10 Score=98.41 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=84.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccccc------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC----CchHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA----GSEFV 89 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~~~~ 89 (170)
+=++|+|++|+||||+++.. |...+-.. ....+.|.. ++|+-....+++||+|.+-... .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence 56899999999999999665 44332211 111222332 3344567788999999774322 12334
Q ss_pred HHHHHHHHHhc--cCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhH
Q 046239 90 GKEIVKCIGLA--KGGIHAVLVVFSARNRFS--QE--------EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTL 157 (170)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~ 157 (170)
...++..++.. ...++.+|+++++.+-++ .. -+..++.+.+.++-. -|++||+||||++.. +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence 56666666554 456899999999874332 11 134456666666555 499999999999977 5
Q ss_pred HHHhhh
Q 046239 158 EDYLGH 163 (170)
Q Consensus 158 ~~~~~~ 163 (170)
++|+..
T Consensus 260 ~~~f~~ 265 (1169)
T TIGR03348 260 EEFFAD 265 (1169)
T ss_pred HHHHHh
Confidence 666554
No 273
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4.4e-10 Score=73.13 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEE-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV-LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..+++++|.+.+|||||+.+-++......-.++.+..-.. ..+. ......+.+|||.|... .+...
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKv--KTvyr~~kRiklQiwDTagqEr-----------yrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKV--KTVYRSDKRIKLQIWDTAGQER-----------YRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEE--eEeeecccEEEEEEEecccchh-----------hhHHH
Confidence 3589999999999999999988865433323333332222 1211 11235688999999974 44455
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc-ccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK-IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~~~ 152 (170)
...++++.++|+++|..+.-+... .-.|+.++-.-. -..++|+|.||||+-.+
T Consensus 88 TayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEecccCCccc
Confidence 567889999999999873222222 122222221111 11389999999997655
No 274
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.18 E-value=6.9e-11 Score=76.79 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=82.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+..+.++|--+||||||+|.++...... .-..|.....+.++. ....+.++|.||... +..
T Consensus 17 ~k~emel~lvGLq~sGKtt~Vn~ia~g~~~e----dmiptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frs 80 (186)
T KOG0075|consen 17 WKEEMELSLVGLQNSGKTTLVNVIARGQYLE----DMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRS 80 (186)
T ss_pred HHheeeEEEEeeccCCcceEEEEEeeccchh----hhcccccceeEEecc-CceEEEEEecCCCcc-----------HHH
Confidence 3456678999999999999999987643311 122333445555554 567789999999984 677
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~~ 153 (170)
++..+.+++++++||+|+.+ ..... ..-++|.+++... ...|++|+.||.|..+..
T Consensus 81 mWerycR~v~aivY~VDaad-~~k~~-~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAAD-PDKLE-ASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred HHHHHhhcCcEEEEEeecCC-cccch-hhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 78888899999999999974 22222 1123334444322 224999999999988763
No 275
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.17 E-value=4.7e-10 Score=82.90 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=89.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-------------------------------CCCCceeEEEeeEEEE
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-------------------------------AGSSGVTITCEMKTTV 64 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~ 64 (170)
.+...+++-+|.-.-||||||-.|+-......+ .+..+.|+...+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 455688999999999999999887643211000 0114566655544444
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
. .++.+++.||||+.+ +.+.+..-...+|+.++++|+..++..+.++. ..+..+++- +++++.+
T Consensus 83 T-~KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH-s~I~sLLGI---rhvvvAV 146 (431)
T COG2895 83 T-EKRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVLEQTRRH-SFIASLLGI---RHVVVAV 146 (431)
T ss_pred c-ccceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhHHHhHHH-HHHHHHhCC---cEEEEEE
Confidence 4 688999999999975 22222234567799999999987766665432 345555554 4999999
Q ss_pred EcCCCCCCChhhHHHHhh
Q 046239 145 TGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 145 tk~D~~~~~~~~~~~~~~ 162 (170)
||+|+++.+++.++++..
T Consensus 147 NKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 147 NKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred eeecccccCHHHHHHHHH
Confidence 999999998766665543
No 276
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=3.6e-10 Score=77.48 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchH---H--
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF---V-- 89 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~-- 89 (170)
...++..++++|+||+|||||++.|+|...+..|............ .... .....++.+.|.+.......+. .
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE-PEEV-KRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc-hHhh-hccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3467789999999999999999999998765443221111100000 0111 2334555666655432111111 1
Q ss_pred HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239 90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..+.+..++....+++++++- ++...++.... .+.+.+.++..+ ..+++++||.-
T Consensus 100 ~~qrv~laral~~~p~illlD-EPt~~LD~~~~~~l~~~l~~~~~~---g~tiii~th~~ 155 (173)
T cd03230 100 MKQRLALAQALLHDPELLILD-EPTSGLDPESRREFWELLRELKKE---GKTILLSSHIL 155 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEe-CCccCCCHHHHHHHHHHHHHHHHC---CCEEEEECCCH
Confidence 223445556667777776653 33336666543 344445444322 26788888853
No 277
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.15 E-value=4e-11 Score=80.48 Aligned_cols=63 Identities=32% Similarity=0.338 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccC------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 85 (170)
+..++++|++|+|||||+|+|.+......+. .....|+...... + .....++||||+.++...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~--l--~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP--L--PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE--E--TTSEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe--c--CCCcEEEECCCCCccccc
Confidence 4789999999999999999999975433321 1122333333333 2 346799999999876443
No 278
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.15 E-value=2e-10 Score=79.77 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH----
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV---- 89 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~---- 89 (170)
-...++.+++++||||||||||++.|.+.+.++.|.................-+.+...++....++....-.+..
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 3566789999999999999999999999998777644332211100000000012233444433333211100000
Q ss_pred --------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHH
Q 046239 90 --------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPT 130 (170)
Q Consensus 90 --------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~ 130 (170)
-.+....+++..-+|++++|-- ++..++++- .+.++.+.+
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE-PTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE-PTSALDPELVGEVLDVMKD 181 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC-CcccCCHHHHHHHHHHHHH
Confidence 2223344455667888877632 233455543 566777777
Q ss_pred HhcccccceEEEEEEcCCCC
Q 046239 131 LFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 131 ~~~~~~~~~~ivv~tk~D~~ 150 (170)
+..++ -+++++||-..+
T Consensus 182 LA~eG---mTMivVTHEM~F 198 (240)
T COG1126 182 LAEEG---MTMIIVTHEMGF 198 (240)
T ss_pred HHHcC---CeEEEEechhHH
Confidence 65554 689999997654
No 279
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.15 E-value=1.5e-09 Score=83.36 Aligned_cols=89 Identities=21% Similarity=0.182 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEE---------------------e--eCCceEEEEeC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV---------------------L--KDGQVVNVIDT 76 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~--~~~~~~~l~Dt 76 (170)
.+|+++|.+++|||||+|+|++...... ..+..|......... + .....+.++|+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~--~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIA--NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccc--CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 4799999999999999999998754221 112233222221111 0 01245789999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (170)
||+..........+.+++..+ ..+|++++|++..
T Consensus 80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 999764333333455555544 4559999999986
No 280
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1.1e-10 Score=79.98 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=67.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-H--HHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-F--VGK 91 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~--~~~ 91 (170)
...++..++++|+||+|||||++.|+|...+..|................+ .....++.+.+.+...+..++ . -..
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 456788999999999999999999999876554422111110000000000 122344444444433111100 1 122
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
+.+..++....+++++++-- +...++.... .+.+.+.++ .+ ..+++++||..
T Consensus 103 ~rl~la~al~~~p~llllDE-P~~gLD~~~~~~l~~~l~~~-~~---~~tii~~sh~~ 155 (171)
T cd03228 103 QRIAIARALLRDPPILILDE-ATSALDPETEALILEALRAL-AK---GKTVIVIAHRL 155 (171)
T ss_pred HHHHHHHHHhcCCCEEEEEC-CCcCCCHHHHHHHHHHHHHh-cC---CCEEEEEecCH
Confidence 33445556667887766643 3336666654 334444443 22 26788888864
No 281
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.14 E-value=5.8e-10 Score=77.79 Aligned_cols=120 Identities=23% Similarity=0.168 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+++++|.+|+|||+|.....+.........+. .+.......++ .....+.++||+|..++. .+-.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~pti-ed~y~k~~~v~-~~~~~l~ilDt~g~~~~~-----------~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTI-EDSYRKELTVD-GEVCMLEILDTAGQEEFS-----------AMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCc-cccceEEEEEC-CEEEEEEEEcCCCcccCh-----------HHHH
Confidence 4689999999999999997776655432211111 12222222222 134467799999966542 1222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+....|++++|++++++-+.++ ..+.+.+.+..+ ...-|+++|.||+|+...
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~-~~~~PivlVGNK~Dl~~~ 123 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKG-RDDVPIILVGNKCDLERE 123 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCCEEEEEEcccchhc
Confidence 34567799999999986655554 334444423222 222499999999998764
No 282
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.1e-10 Score=77.34 Aligned_cols=120 Identities=15% Similarity=0.092 Sum_probs=84.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
-...++.+|+++|--+|||||++..|--.+.... -+|.......+.+ ....+.+||.-|... +
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~ 74 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------L 74 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------c
Confidence 3466778999999999999999977765443222 3455555666666 688999999999964 5
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
+..++.+..+.+++|||+|.+++..-.+ ..+.|...+... ...|++++.||.|....
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 5566677888999999999975432222 333333333322 23599999999998866
No 283
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.13 E-value=2.1e-10 Score=84.82 Aligned_cols=127 Identities=14% Similarity=0.026 Sum_probs=71.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCce-eEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchH-----
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-TITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF----- 88 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----- 88 (170)
...++..++++||||||||||++.|+|...+..|...... ..... ...+ .....++.+.|.+++.-...+.
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~~lT~~e~l~~~~ 103 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYPELTVRENLEFFA 103 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCccccHHHHHHHHH
Confidence 4567789999999999999999999998876544221111 10000 0111 2345677777766542110000
Q ss_pred ------------H------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHH
Q 046239 89 ------------V------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTL 131 (170)
Q Consensus 89 ------------~------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~ 131 (170)
. .++.+..+.....+|+++++ .++..++++.. ..+++.++++
T Consensus 104 ~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL-DEPt~GLDp~~~~~~~~~l~~l 182 (293)
T COG1131 104 RLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL-DEPTSGLDPESRREIWELLREL 182 (293)
T ss_pred HHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE-CCCCcCCCHHHHHHHHHHHHHH
Confidence 0 22233333445666766555 33344666664 4555666665
Q ss_pred hcccccceEEEEEEcC
Q 046239 132 FGKKIFDYMIVVFTGG 147 (170)
Q Consensus 132 ~~~~~~~~~ivv~tk~ 147 (170)
..+. ..+|++.||.
T Consensus 183 ~~~g--~~tvlissH~ 196 (293)
T COG1131 183 AKEG--GVTILLSTHI 196 (293)
T ss_pred HhCC--CcEEEEeCCc
Confidence 4332 1488888885
No 284
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.13 E-value=1.8e-09 Score=76.93 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=64.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc-cccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK-AFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.+-..|+++|++++|||||+|.|+|.. .+..+.....+|.....+...+. .+..+.++||||+.+...........+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 344689999999999999999999972 33333444456665555544331 257899999999997644330111111
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLP 129 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~ 129 (170)
.... . .-.++++|..... ....+...+..+.
T Consensus 85 ~~l~-~--llss~~i~n~~~~--~~~~~~~~l~~~~ 115 (224)
T cd01851 85 FALA-T--LLSSVLIYNSWET--ILGDDLAALMGLL 115 (224)
T ss_pred HHHH-H--HHhCEEEEeccCc--ccHHHHHHHHHHH
Confidence 1111 1 1347788777654 3334444444443
No 285
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.13 E-value=5.2e-10 Score=72.34 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=83.4
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
+...++.+|+++|--++|||||++.|.+.....-. .+.+..+ ....+...-.+.+||.-|.- .+
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hlt-pT~GFn~----k~v~~~g~f~LnvwDiGGqr-----------~I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLT-PTNGFNT----KKVEYDGTFHLNVWDIGGQR-----------GI 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhcc-ccCCcce----EEEeecCcEEEEEEecCCcc-----------cc
Confidence 44577889999999999999999999987753321 1222222 22222134678899988886 37
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCChhhHHHHh
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDNEKTLEDYL 161 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~~~~~~~~~ 161 (170)
+.++.+++.++|.+|||+|..+.-..+ ++-+.+.+++.+ -..-|+.+..||.|++.. ...++.-
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfe--E~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia 141 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFE--EISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIA 141 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHH--HHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHH
Confidence 788889999999999999975322111 222222232221 122389999999998865 2444443
No 286
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.13 E-value=5e-10 Score=83.46 Aligned_cols=37 Identities=30% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS 51 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~ 51 (170)
....+..++++||||||||||++.|+|...++.|...
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~ 61 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4566788999999999999999999999987776444
No 287
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=1.9e-09 Score=77.30 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
+..++..++|+||||+|||||+++++|...+..|
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 4566789999999999999999999997665554
No 288
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.12 E-value=1.1e-10 Score=93.09 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
.+++.+++++|++|||||||++.|+|...+..|..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 45788999999999999999999999987766543
No 289
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.12 E-value=3.3e-10 Score=79.91 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=32.4
Q ss_pred CCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 11 KPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 11 ~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...-...++..++|+||||||||||+|.|.+...+..|.
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~ 61 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 334456788999999999999999999999988776553
No 290
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=9.7e-10 Score=83.28 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh--CCcccccc------------------CCCCceeEEEeeEEEEeeCCceEEEEeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL--GRKAFKAS------------------AGSSGVTITCEMKTTVLKDGQVVNVIDT 76 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~--~~~~~~~~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 76 (170)
...+.++|+..+.+|||||-..|+ |......| ....+.........++| ++..+.|+||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDT 88 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDT 88 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCC
Confidence 455789999999999999986654 21111111 01134555566667777 7899999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
||+.+|+.+.- +.+.-+|..+.|+|+..++.++..++++..+-. . -|++-++||+|....++
T Consensus 89 PGHeDFSEDTY-----------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR---~--iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 89 PGHEDFSEDTY-----------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR---D--IPIFTFINKLDREGRDP 150 (528)
T ss_pred CCccccchhHH-----------HHHHhhheeeEEEecccCccHHHHHHHHHHhhc---C--CceEEEeeccccccCCh
Confidence 99998753222 123445899999999989999998888765543 2 49999999999876654
No 291
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.11 E-value=1.2e-09 Score=78.35 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=82.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC---CchHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA---GSEFVGK 91 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~ 91 (170)
.....++++.|.+++|||+|+|.++........ ...++.|.....+. -+..++++|.||+..+.- ....+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 455678999999999999999999987643332 32556666555444 377999999999543211 1111222
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
-...+..... +.-.++++++++-++.+-|...++++.+. . -|+.+|+||||+...
T Consensus 209 ~t~~Y~leR~-nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~--VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERE-NLVRVFLLVDASVPIQPTDNPEIAWLGEN---N--VPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhh-hhheeeeeeeccCCCCCCChHHHHHHhhc---C--CCeEEeeehhhhhhh
Confidence 2222222222 22335556676667777888888888775 2 499999999997644
No 292
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.11 E-value=3e-10 Score=77.73 Aligned_cols=58 Identities=31% Similarity=0.402 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
....+++++|.+|+|||||+|+|++......+. .++.|...+... + +..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEE--e--CCCEEEEECcCC
Confidence 344689999999999999999999987654433 345555444332 2 356899999996
No 293
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.4e-09 Score=84.35 Aligned_cols=130 Identities=19% Similarity=0.225 Sum_probs=89.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcc---cccc----------CCCCceeEEEeeEEEEeeCC---ceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKA---FKAS----------AGSSGVTITCEMKTTVLKDG---QVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~---~~~~----------~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~ 79 (170)
.++-+++.++..-.-|||||...|+.... ...+ .+..+.|+..+.....| .. ..+.++||||+
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify-~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFY-KDGQSYLLNLIDTPGH 135 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEE-EcCCceEEEeecCCCc
Confidence 35667899999999999999988754332 1111 13457888777766666 44 67899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHH
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLED 159 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 159 (170)
-+|..+.. + .+.-++.+|+|+|+.+++..+....+-.-.+. . -.+|.|+||+|+...+.+.++.
T Consensus 136 vDFs~EVs-------R----slaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~--L~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 136 VDFSGEVS-------R----SLAACDGALLVVDASQGVQAQTVANFYLAFEA---G--LAIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred ccccceeh-------e----hhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---C--CeEEEeeeccCCCCCCHHHHHH
Confidence 99754333 2 23344899999999988877765443322221 2 2789999999999886655554
Q ss_pred Hhh
Q 046239 160 YLG 162 (170)
Q Consensus 160 ~~~ 162 (170)
-+.
T Consensus 200 q~~ 202 (650)
T KOG0462|consen 200 QLF 202 (650)
T ss_pred HHH
Confidence 443
No 294
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.11 E-value=1.1e-09 Score=81.64 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=53.0
Q ss_pred EEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEE---------------------e--eCCceEEEEeCCC
Q 046239 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTV---------------------L--KDGQVVNVIDTPG 78 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~--~~~~~~~l~DtpG 78 (170)
|+++|.+++|||||+|+|++...... ..+..|......... . .....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~--~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIA--NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCccc--CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999998753211 111122222111111 0 0224689999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (170)
+..........+.+++..+ .++|++++|++..
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9653322333444555444 4559999999986
No 295
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.7e-10 Score=89.07 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
.-+..++..++++|+||+|||||++.|.|...+..|..
T Consensus 341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 34567888999999999999999999999987666543
No 296
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.10 E-value=7.5e-10 Score=75.93 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=68.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch-H--HHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-F--VGK 91 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~--~~~ 91 (170)
...++..++++|++|+|||||++.|+|...+..|................+ .....++.+-|.+...+..++ . -..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-GDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH-HhheEEECCCCccccCcHHHHCcCHHHH
Confidence 346788999999999999999999999876554422211110000000000 122344444444432111100 1 122
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
+.+..++....+++++++- ++...++..... +.+.+.+...+ ..+++++||..
T Consensus 103 qrv~la~al~~~p~~lllD-EPt~~LD~~~~~~l~~~l~~~~~~---~~tii~~sh~~ 156 (173)
T cd03246 103 QRLGLARALYGNPRILVLD-EPNSHLDVEGERALNQAIAALKAA---GATRIVIAHRP 156 (173)
T ss_pred HHHHHHHHHhcCCCEEEEE-CCccccCHHHHHHHHHHHHHHHhC---CCEEEEEeCCH
Confidence 4455556677788876664 333366666543 34445444221 36888888854
No 297
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.09 E-value=1.2e-09 Score=74.26 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...++..++++|+||+|||||++.|+|...+..|.......................++.+ +. .-..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---LS-------~G~~qrl 91 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---LS-------VGERQMV 91 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---cC-------HHHHHHH
Confidence 4567889999999999999999999998765444211111000000000000122333333 11 1223455
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..++....+++++++- ++...++.... .+.+.+.++..+ ..+++++||.-
T Consensus 92 ~laral~~~p~illlD-EP~~~LD~~~~~~l~~~l~~~~~~---~~tiii~sh~~ 142 (163)
T cd03216 92 EIARALARNARLLILD-EPTAALTPAEVERLFKVIRRLRAQ---GVAVIFISHRL 142 (163)
T ss_pred HHHHHHhcCCCEEEEE-CCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCH
Confidence 5666677788777663 33336666543 344445444221 36788888863
No 298
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.4e-09 Score=81.20 Aligned_cols=123 Identities=22% Similarity=0.323 Sum_probs=94.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.|+..|.---|||||+.+++|..... .+....+.|+...++..+. .+..+.++|.||+.+ ++..+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 47778889999999999999875422 2345668888888888887 566999999999985 3444444
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHh
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~ 161 (170)
.....|.+++|+++++++..+..+.+..+.- ++. .+.++|+||+|..++ ..+++.+
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi---~~giivltk~D~~d~--~r~e~~i 125 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGI---KNGIIVLTKADRVDE--ARIEQKI 125 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCC---CceEEEEeccccccH--HHHHHHH
Confidence 5678899999999988999998888776655 443 378999999999987 3444443
No 299
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.08 E-value=3.1e-09 Score=72.99 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=64.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...++.+++++|+||+|||||++.|+|...+..|...... .. ..++.+.+.+ ..-.++.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~~-------i~~~~q~~~L-------SgGq~qrv 80 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG------IT-------PVYKPQYIDL-------SGGELQRV 80 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC------EE-------EEEEcccCCC-------CHHHHHHH
Confidence 4467889999999999999999999998765443221110 00 1112221211 11234556
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..++....+++++++- ++...++.... .+.+.+.+...+. ..+++++||..
T Consensus 81 ~laral~~~p~lllLD-EPts~LD~~~~~~l~~~l~~~~~~~--~~tiiivsH~~ 132 (177)
T cd03222 81 AIAAALLRNATFYLFD-EPSAYLDIEQRLNAARAIRRLSEEG--KKTALVVEHDL 132 (177)
T ss_pred HHHHHHhcCCCEEEEE-CCcccCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCH
Confidence 6666677788776663 33336665543 3445555543211 15788888864
No 300
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.05 E-value=1.2e-09 Score=77.77 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3567889999999999999999999998765554
No 301
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.05 E-value=1.4e-09 Score=77.22 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 4567889999999999999999999998765544
No 302
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.04 E-value=3.6e-10 Score=91.22 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++..++++|++|+|||||++.|+|...+..|.
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 4577889999999999999999999998776653
No 303
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=2e-09 Score=76.17 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 4567889999999999999999999998765544
No 304
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.04 E-value=3.3e-09 Score=81.05 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=86.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccc-cc--c-----------CCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAF-KA--S-----------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~--~-----------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (170)
+-.+|+++..-.-|||||+..|+..... .. . ....+.|+..+-..+.| ++.++.++||||+-+|-
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 3468999999999999999998764311 00 0 12356777777777777 88999999999999875
Q ss_pred CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
...+ + .+.=+|.+++++|+.+++-++.+..+..-.+. + -+-|+|+||.|.....+
T Consensus 83 GEVE-------R----vl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~---g--L~PIVVvNKiDrp~Arp 137 (603)
T COG1217 83 GEVE-------R----VLSMVDGVLLLVDASEGPMPQTRFVLKKALAL---G--LKPIVVINKIDRPDARP 137 (603)
T ss_pred chhh-------h----hhhhcceEEEEEEcccCCCCchhhhHHHHHHc---C--CCcEEEEeCCCCCCCCH
Confidence 4333 2 22334899999999988888887665543332 2 25678889999998854
No 305
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.04 E-value=2e-09 Score=74.37 Aligned_cols=130 Identities=9% Similarity=0.064 Sum_probs=66.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCC---CCCCCCCCchHH--
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTP---GLFDSSAGSEFV-- 89 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp---G~~~~~~~~~~~-- 89 (170)
...++..++++|+||+|||||++.|+|...+..|.......................++.+.+ ++.......+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 345778999999999999999999999876555422111100000000000012334444432 222211111111
Q ss_pred -------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCC
Q 046239 90 -------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 90 -------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..+.+..++....+++++++- ++...++.... .+.+.+.++.. . ..+++++||..
T Consensus 102 ~~~LS~G~~qrl~la~al~~~p~llllD-EP~~~LD~~~~~~l~~~l~~~~~-~--~~tiii~sh~~ 164 (182)
T cd03215 102 SSLLSGGNQQKVVLARWLARDPRVLILD-EPTRGVDVGAKAEIYRLIRELAD-A--GKAVLLISSEL 164 (182)
T ss_pred HhhcCHHHHHHHHHHHHHccCCCEEEEC-CCCcCCCHHHHHHHHHHHHHHHH-C--CCEEEEEeCCH
Confidence 113344555566777776653 33336666543 33444444322 1 36888888864
No 306
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.04 E-value=2.5e-09 Score=83.52 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=85.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
.....||+++|.-|+||||||-+|+..+.+..-.. ....++..... +......++||..-.+ ....+.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt----Pe~vpt~ivD~ss~~~-------~~~~l~ 74 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT----PENVPTSIVDTSSDSD-------DRLCLR 74 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC----cCcCceEEEecccccc-------hhHHHH
Confidence 44568999999999999999999998776443211 12222221111 1445588999874433 111122
Q ss_pred HHHHhccCCccEEEEEEeCCCC--CCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHH
Q 046239 95 KCIGLAKGGIHAVLVVFSARNR--FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLED 159 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~ 159 (170)
.-.+++|+++++...++. ++.....++-.+++.+++....|+|+|.||.|.......++++
T Consensus 75 ----~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~ 137 (625)
T KOG1707|consen 75 ----KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEV 137 (625)
T ss_pred ----HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhH
Confidence 233566999999887632 3333567888888888776777999999999998775543333
No 307
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.04 E-value=4.2e-10 Score=90.87 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++.+++++|++|||||||++.|+|.. +..|.
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 3578899999999999999999999988 55543
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.04 E-value=4.1e-09 Score=71.82 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4467889999999999999999999998765444
No 309
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.04 E-value=9.8e-10 Score=79.02 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
+..++..++++||||||||||+++|+|.-.+..|
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 4566899999999999999999999997766555
No 310
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.04 E-value=3.4e-10 Score=77.99 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=65.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC------chH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG------SEF 88 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------~~~ 88 (170)
...++..++++|+||+|||||++.|+|...+..|............ ...+ .....++.+.|.+...... -..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKAL-SSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHH-HhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4567789999999999999999999998765444221111100000 0000 1112233333332211000 001
Q ss_pred HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcC
Q 046239 89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
-..+.+..++....+++++++--+. ..++.... .+++.+.+. .+ ..+++++||.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~-~~---~~tii~~sh~ 156 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEV-LK---DKTLIWITHH 156 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHH-cC---CCEEEEEecC
Confidence 1334455566677788777664333 36666543 344555544 22 3678888875
No 311
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=5.8e-09 Score=81.47 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=88.9
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcc-----------------------------ccccCCCCceeEEEeeEEE
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKA-----------------------------FKASAGSSGVTITCEMKTT 63 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~~ 63 (170)
..........+++|...+|||||+..|+-... ...+.+..+.|.......+
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 34455778899999999999999977653210 0111233566666665666
Q ss_pred EeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-----CCCH--HHHHHHHHHHHHhcccc
Q 046239 64 VLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-----RFSQ--EEEAAVHRLPTLFGKKI 136 (170)
Q Consensus 64 ~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-----~~~~--~~~~~~~~l~~~~~~~~ 136 (170)
+- ....+.|+|+||+.+|. ..++ .....+|+.++|+|++. +|.. +.++.+..++. ++.
T Consensus 251 es-~~~~~tliDaPGhkdFi-------~nmi----~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi-- 315 (603)
T KOG0458|consen 251 ES-KSKIVTLIDAPGHKDFI-------PNMI----SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGI-- 315 (603)
T ss_pred ec-CceeEEEecCCCccccc-------hhhh----ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCc--
Confidence 54 67899999999988752 1222 34567799999999862 2221 23444444444 442
Q ss_pred cceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 137 FDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 137 ~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
..++|++||+|++..+.++++++..
T Consensus 316 -~qlivaiNKmD~V~Wsq~RF~eIk~ 340 (603)
T KOG0458|consen 316 -SQLIVAINKMDLVSWSQDRFEEIKN 340 (603)
T ss_pred -ceEEEEeecccccCccHHHHHHHHH
Confidence 4899999999999998777766543
No 312
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.04 E-value=5.1e-10 Score=89.30 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..+++.+++++|++|+|||||++.|+|...+..|.
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 378 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 45678899999999999999999999998776653
No 313
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.03 E-value=1.2e-09 Score=72.45 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
.+++++|.+|+|||||+|+|++...... ....+.|.... .+.. ...+.++||||+.-
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~--~~~~--~~~~~i~DtpG~~~ 140 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQ--TIFL--TPTITLCDCPGLVF 140 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceE--EEEe--CCCEEEEECCCcCC
Confidence 3899999999999999999998775432 22333333332 3333 23689999999863
No 314
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=8.8e-10 Score=77.88 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
.++ +++++|+||+|||||++.|+|...+..|
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 346 8999999999999999999998765544
No 315
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.03 E-value=2.6e-09 Score=78.94 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=47.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE 87 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 87 (170)
....+++++|.+|+|||||+|+|++......+. .++.|...+. +.. +..+.++||||+..+.....
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQW--IKL--GKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEE--EEe--CCcEEEEECCCcCCCCCCcH
Confidence 456789999999999999999999976544433 3455555443 322 45689999999987654443
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.03 E-value=3.4e-09 Score=70.55 Aligned_cols=105 Identities=17% Similarity=0.084 Sum_probs=60.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...++..++++|+||+|||||++.|+|...+..|.. ... ....+.++.. +. .-..+..
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i------~~~-------~~~~i~~~~~--lS-------~G~~~rv 79 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV------TWG-------STVKIGYFEQ--LS-------GGEKMRL 79 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE------EEC-------CeEEEEEEcc--CC-------HHHHHHH
Confidence 346778999999999999999999999876443321 111 0011111111 11 1223455
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..++....+++++++--+ ...++...... .+.+.+. ..+++++||..
T Consensus 80 ~laral~~~p~illlDEP-~~~LD~~~~~~l~~~l~~~------~~til~~th~~ 127 (144)
T cd03221 80 ALAKLLLENPNLLLLDEP-TNHLDLESIEALEEALKEY------PGTVILVSHDR 127 (144)
T ss_pred HHHHHHhcCCCEEEEeCC-ccCCCHHHHHHHHHHHHHc------CCEEEEEECCH
Confidence 556667778877666333 33555554433 3334332 25788888863
No 317
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.03 E-value=1.8e-09 Score=85.45 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++.+|+|||+||+|||||++.|+|...+..|.
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~ 59 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence 45678999999999999999999999988766654
No 318
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.02 E-value=4.8e-10 Score=71.03 Aligned_cols=104 Identities=21% Similarity=0.256 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+++++|+.|+|||||+++|-|..... -.|.... | ++ -..+||||-+-- + ...-..+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly------kKTQAve-----~-~d--~~~IDTPGEy~~----~---~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY------KKTQAVE-----F-ND--KGDIDTPGEYFE----H---PRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh------cccceee-----c-cC--ccccCCchhhhh----h---hHHHHHHHH
Confidence 579999999999999999999866421 1222222 1 11 125899998731 1 112122233
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++++++|..++++-+....-++. ...+|+|-|+||.|+.++
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f~~--------~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGFLD--------IGVKKVIGVVTKADLAED 105 (148)
T ss_pred HhhccceeeeeecccCccccCCccccc--------ccccceEEEEecccccch
Confidence 456779999998887543222211111 112479999999998743
No 319
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=8.5e-10 Score=76.74 Aligned_cols=57 Identities=30% Similarity=0.387 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcccc-------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
+..++++|.+|+|||||||+|++..... .....++.|....... . +..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIP--L--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEe--c--CCCCEEEeCcCC
Confidence 4689999999999999999999865322 1122334444443333 2 236899999996
No 320
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=2e-09 Score=77.35 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567889999999999999999999998765544
No 321
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.01 E-value=1e-08 Score=72.93 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567789999999999999999999998765444
No 322
>PRK13768 GTPase; Provisional
Probab=99.01 E-value=2.5e-09 Score=77.61 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=50.2
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239 69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..+.++|+||..++... ...+..+.+.+.... .+++++++|+....+..+.....++..........|+++|+||+|
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D 173 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKAD 173 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHh
Confidence 36899999998763221 223333444443322 789999999976666666444443331111112359999999999
Q ss_pred CCCCC
Q 046239 149 YLEDN 153 (170)
Q Consensus 149 ~~~~~ 153 (170)
.+...
T Consensus 174 ~~~~~ 178 (253)
T PRK13768 174 LLSEE 178 (253)
T ss_pred hcCch
Confidence 98763
No 323
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.01 E-value=4.3e-09 Score=74.46 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||+|||||++.|+|...+..|
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 467889999999999999999999998765544
No 324
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.01 E-value=4e-10 Score=90.83 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++..++++|++|+|||||++.|+|...+..|.
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 4577889999999999999999999998776653
No 325
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.00 E-value=4.9e-09 Score=75.14 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765544
No 326
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.00 E-value=1.4e-09 Score=73.24 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=41.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
....+++++|.+|+|||||+|+|++......+. .++.|...... .. ...+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~~--~~--~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQEV--KL--DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEEE--Ee--cCCEEEEECCCC
Confidence 456889999999999999999999876533322 23444433332 22 357899999996
No 327
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.00 E-value=6.1e-10 Score=89.97 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..+++..++++|++|+|||||++.|+|...+..|.
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 34577899999999999999999999998776653
No 328
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.00 E-value=4.7e-10 Score=90.27 Aligned_cols=35 Identities=31% Similarity=0.258 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..+++.+++++|++|+|||||++.|+|...+..|.
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 35678899999999999999999999998766653
No 329
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.99 E-value=2.2e-09 Score=80.47 Aligned_cols=39 Identities=23% Similarity=0.156 Sum_probs=33.1
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS 51 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~ 51 (170)
.-+..++..+.++|||||||||+++.|.|...++.|...
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~ 63 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 345677889999999999999999999999988877443
No 330
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.99 E-value=6.2e-09 Score=73.70 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4567889999999999999999999998766554
No 331
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.99 E-value=2.2e-09 Score=75.89 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3567889999999999999999999998765544
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=98.99 E-value=1.1e-09 Score=82.64 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=42.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
..++++|+||+|||||||+|++......+... ..+|+....+.. . ....++||||+-++..
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l---~-~~~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF---P-HGGDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe---c-CCCEEEECCCCCcccC
Confidence 35899999999999999999987655443222 123444444443 1 2346999999998755
No 333
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.98 E-value=4.5e-09 Score=77.25 Aligned_cols=65 Identities=25% Similarity=0.316 Sum_probs=45.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 86 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (170)
....+++++|.+|+|||||+|+|++......+. .++.|...+. +.. ...+.++||||+..+....
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtPG~~~~~~~~ 180 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQW--IKL--SDGLELLDTPGILWPKFED 180 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEE--EEe--CCCEEEEECCCcccCCCCc
Confidence 345789999999999999999999876544432 3445554443 332 3468999999997654333
No 334
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.98 E-value=5.1e-09 Score=74.25 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999998765444
No 335
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.3e-09 Score=80.40 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++..++|+|+||||||||++.|+|...+..|.
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 62 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 45577899999999999999999999998766653
No 336
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.98 E-value=2.3e-09 Score=76.71 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4567899999999999999999999998765554
No 337
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.98 E-value=1.3e-08 Score=71.47 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567899999999999999999999998765554
No 338
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.97 E-value=7e-09 Score=78.33 Aligned_cols=34 Identities=32% Similarity=0.394 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||+|||||++.|+|...+..|
T Consensus 63 ~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G 96 (340)
T PRK13536 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAG 96 (340)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence 3567889999999999999999999998766554
No 339
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=4e-09 Score=77.05 Aligned_cols=63 Identities=29% Similarity=0.304 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccC------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
.+...+++|+||+|||||+|+|.+......+. ....+|+....... .....++||||+.++..
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l----~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL----PGGGWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc----CCCCEEEeCCCCCccCc
Confidence 45688999999999999999999854333321 22234444444433 24678999999998754
No 340
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.97 E-value=5.6e-10 Score=84.87 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcccc----ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+..++++|.+|+|||||+|+|++..... .....++.|.... .+.. .....++||||+............+.+
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l 229 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPL--DDGHSLYDTPGIINSHQMAHYLDKKDL 229 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEe--CCCCEEEECCCCCChhHhhhhcCHHHH
Confidence 4689999999999999999999854311 1123344444333 3332 345689999999864211111111111
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+. .........+.++....+.......++.+.. .. ..+.+++++.+.+..
T Consensus 230 ~~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~--~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 230 KYIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EK--TSFTFYVSNELNIHR 281 (360)
T ss_pred hhcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cc--eEEEEEccCCceeEe
Confidence 1111 1234455666666553333333222332221 11 256777777776543
No 341
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=6.3e-09 Score=73.54 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
-...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34568889999999999999999999998765544
No 342
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=3.3e-09 Score=75.46 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4457889999999999999999999998665444
No 343
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.97 E-value=3.7e-09 Score=78.70 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||||||||++.|+|...+..|
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567889999999999999999999998765554
No 344
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.97 E-value=7.6e-10 Score=90.96 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..++.+++++|++|||||||++.|+|...+..|.
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 4568899999999999999999999998776653
No 345
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3.6e-09 Score=80.34 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G 59 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 3456789999999999999999999998776555
No 346
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.96 E-value=7.7e-09 Score=73.42 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 3457789999999999999999999998765544
No 347
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.96 E-value=8e-09 Score=73.13 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765444
No 348
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=3.9e-09 Score=75.87 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=82.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC---CceEEEEeCCCCCCCCCCchHH---
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSEFV--- 89 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~--- 89 (170)
..-.++|+-||.+|.|||||+.+|.+...........-.+.......+++.. ...+.++||.|+++.....+..
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 4455789999999999999999999876433322222223333333333312 2357899999999754432211
Q ss_pred ----HHHH----------H-HHHHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 90 ----GKEI----------V-KCIGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 90 ----~~~~----------~-~~~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..++ . .+......++|+.+|.+.++ +++...+.-.+..+.... ++|-|+-|+|.+..
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskV------NIIPvIAKaDtisK 191 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKV------NIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhhh------hhHHHHHHhhhhhH
Confidence 1111 1 11122356889999998885 566666666666665543 88999999998866
No 349
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=8.8e-09 Score=74.18 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4467889999999999999999999998765544
No 350
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.96 E-value=1.5e-09 Score=77.22 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
....+..++++|+|||||||+++.+.+...++.|................+ +.+..+++.-.|++.
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-Rr~IGYviQqigLFP 88 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-RRKIGYVIQQIGLFP 88 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-HHhhhhhhhhcccCC
Confidence 355678899999999999999999999887776644433333333333333 344556666666654
No 351
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.96 E-value=5.4e-09 Score=79.80 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G 58 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3457789999999999999999999998766554
No 352
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=4.6e-09 Score=75.77 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG 56 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4567789999999999999999999998765544
No 353
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=6.5e-09 Score=76.18 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G 79 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG 79 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4567889999999999999999999998765544
No 354
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.96 E-value=1.1e-09 Score=89.22 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS 51 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~ 51 (170)
...++.+++++|++|||||||.+.|+|...+..|...
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~ 531 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4677899999999999999999999999887766443
No 355
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.95 E-value=7.6e-09 Score=77.15 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++||||||||||++.|+|...+..|
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3456789999999999999999999998766554
No 356
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.95 E-value=1.8e-09 Score=76.06 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|++|+|||||++.|+|...+..|
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 63 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG 63 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3467889999999999999999999998765554
No 357
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.1e-09 Score=76.92 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=89.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (170)
..++..+|+.+|.-.-|||||-.+|+..-... .+....+.|+......+.. ..+.+..+|+||+-
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHa 86 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHA 86 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChH
Confidence 45677899999999999999999987532100 0122345665555555555 67888999999998
Q ss_pred CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHH
Q 046239 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDY 160 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~ 160 (170)
+ ..+.|+--+ .+.|..|+|+.+.++.-++.++.+-.-++ .+- ..+++++||+|++++ .++-+.
T Consensus 87 D-------YvKNMItgA----aqmDgAILVVsA~dGpmPqTrEHiLlarq-vGv---p~ivvflnK~Dmvdd--~ellel 149 (394)
T COG0050 87 D-------YVKNMITGA----AQMDGAILVVAATDGPMPQTREHILLARQ-VGV---PYIVVFLNKVDMVDD--EELLEL 149 (394)
T ss_pred H-------HHHHHhhhH----HhcCccEEEEEcCCCCCCcchhhhhhhhh-cCC---cEEEEEEecccccCc--HHHHHH
Confidence 6 444444333 34589999999988888887665543333 332 378999999999986 355555
Q ss_pred hhh
Q 046239 161 LGH 163 (170)
Q Consensus 161 ~~~ 163 (170)
++.
T Consensus 150 Vem 152 (394)
T COG0050 150 VEM 152 (394)
T ss_pred HHH
Confidence 543
No 358
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.95 E-value=9.1e-10 Score=90.71 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++.+++++|++|||||||++.|+|...+..|.
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 5678899999999999999999999998776653
No 359
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.95 E-value=4.6e-09 Score=79.69 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 27 i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G 59 (353)
T TIGR03265 27 VKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG 59 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce
Confidence 456789999999999999999999999876655
No 360
>PRK10908 cell division protein FtsE; Provisional
Probab=98.95 E-value=1.1e-08 Score=72.89 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999998765544
No 361
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.95 E-value=1.4e-09 Score=89.66 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..+++.+++++|++|+|||||++.|+|...+..|.
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 35578899999999999999999999998776653
No 362
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.95 E-value=1.9e-09 Score=88.56 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++.+++++|++|||||||++.|+|...+..|.
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 5578899999999999999999999998776654
No 363
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=2.4e-08 Score=72.61 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765544
No 364
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=2.2e-08 Score=71.01 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 3567789999999999999999999998765554
No 365
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.94 E-value=4.3e-09 Score=74.89 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765544
No 366
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.94 E-value=8.1e-09 Score=73.50 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765544
No 367
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.94 E-value=1.7e-08 Score=70.42 Aligned_cols=126 Identities=11% Similarity=0.042 Sum_probs=67.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc--cccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCC-CCCch----
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDS-SAGSE---- 87 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~-~~~~~---- 87 (170)
...++..++|+|+||+|||||++.|+|.. .+..|........ .. ...+ .....++.+.+.+... +..+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~-~~--~~~~-~~~i~~~~q~~~~~~~~t~~~~i~~~ 106 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP-LD--KRSF-RKIIGYVPQDDILHPTLTVRETLMFA 106 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe-Cc--hHhh-hheEEEccCcccCCCCCcHHHHHHHH
Confidence 45678899999999999999999999987 5444321111100 00 0011 2233445555554431 11111
Q ss_pred -----H--HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHH-HHHHHHHHhcccccceEEEEEEcCC
Q 046239 88 -----F--VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA-AVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 88 -----~--~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
. -..+.+..++....+++++++ .++...++....+ +.+.+.++. +. ..++++++|.-
T Consensus 107 ~~~~~LS~G~~qrv~laral~~~p~illl-DEP~~~LD~~~~~~l~~~l~~~~-~~--~~tiii~sh~~ 171 (194)
T cd03213 107 AKLRGLSGGERKRVSIALELVSNPSLLFL-DEPTSGLDSSSALQVMSLLRRLA-DT--GRTIICSIHQP 171 (194)
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCCEEEE-eCCCcCCCHHHHHHHHHHHHHHH-hC--CCEEEEEecCc
Confidence 0 012223444556677776665 3333466666543 344444432 21 36888888863
No 368
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.94 E-value=1.1e-09 Score=88.22 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..+++..++++|++|+|||||++.|+|...+..|
T Consensus 362 ~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G 395 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG 395 (576)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 3567889999999999999999999998876655
No 369
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.94 E-value=1.1e-08 Score=71.80 Aligned_cols=130 Identities=11% Similarity=0.050 Sum_probs=64.8
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCc--cccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC------
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRK--AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG------ 85 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~------ 85 (170)
-...++..++|+|+||+|||||++.|+|.. .+..|.......................++.+.|.+......
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~ 100 (200)
T cd03217 21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRY 100 (200)
T ss_pred eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhh
Confidence 345678899999999999999999999973 233331111000000000000001123344444433321100
Q ss_pred --chH--HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcC
Q 046239 86 --SEF--VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 86 --~~~--~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
... -..+.+..++....+++++++ .++...++.... .+++.+.++... ..+++++||.
T Consensus 101 ~~~~LS~G~~qrv~laral~~~p~illl-DEPt~~LD~~~~~~l~~~L~~~~~~---~~tiii~sh~ 163 (200)
T cd03217 101 VNEGFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREE---GKSVLIITHY 163 (200)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEE-eCCCccCCHHHHHHHHHHHHHHHHC---CCEEEEEecC
Confidence 011 122334455556677776665 333346666543 444555554221 3677888875
No 370
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.94 E-value=1.8e-08 Score=70.92 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 56 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG 56 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567789999999999999999999998765554
No 371
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.94 E-value=4.6e-09 Score=78.16 Aligned_cols=34 Identities=32% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G 57 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999998766554
No 372
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.93 E-value=9.1e-09 Score=74.91 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3567889999999999999999999998765544
No 373
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.93 E-value=5.2e-09 Score=75.05 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3467889999999999999999999998766554
No 374
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=1.1e-08 Score=73.39 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 54 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASG 54 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765554
No 375
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.93 E-value=2.3e-09 Score=75.00 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+++++|++|||||++=..+.....+.. -...+.|+........+.....+.+||+-|...+ ....+...-.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D-~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~f------men~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARD-TRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEF------MENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhh-hhccCCcceeeehhhhhhhhheeehhccCCcHHH------HHHHHhhcch
Confidence 46899999999999987655553222111 2344566555544444434567889999998742 2222222333
Q ss_pred hccCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNR-FSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
....+++++++|+|+..+ ++..-...-+-|..++.....-.++++++|.|++..+
T Consensus 77 ~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 77 NIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 456788999999999632 3332222222233333333334899999999998663
No 376
>PRK00098 GTPase RsgA; Reviewed
Probab=98.93 E-value=6.4e-09 Score=77.25 Aligned_cols=61 Identities=30% Similarity=0.310 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDS 82 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (170)
.+..++++|+||+|||||+|+|++......+... ...|....... . ....+++||||+.++
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~--~--~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD--L--PGGGLLIDTPGFSSF 229 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE--c--CCCcEEEECCCcCcc
Confidence 3568999999999999999999997655443222 12333233322 2 234689999999864
No 377
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=4.1e-09 Score=76.04 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 58 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG 58 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3457789999999999999999999998765554
No 378
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.93 E-value=1.9e-08 Score=71.19 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
...++.+++++|++|||||||.+.|.|...+..|..
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 456789999999999999999999999988776643
No 379
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.93 E-value=6.2e-09 Score=79.51 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G 69 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3456789999999999999999999999876554
No 380
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.93 E-value=7.1e-09 Score=68.73 Aligned_cols=122 Identities=18% Similarity=0.088 Sum_probs=73.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+..++|.+-+|||+|++-.+....+.-...+.+..--.......-.....+.+|||.|.. ++++..+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqe-----------rfrsitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFRSITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHHHHHH
Confidence 46888999999999999999886554221111111111111111111123568899999997 4566666
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
.++++.-.+++|+|.+++-+.+. ..++..-....+ ...++ ..+|.+|+|+...
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhhh
Confidence 77888888999999975544443 233333333333 22233 4678889997643
No 381
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.93 E-value=1.5e-09 Score=87.36 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++++|++|||||||++.|+|...+..|
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3467889999999999999999999998876655
No 382
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.92 E-value=1.5e-08 Score=71.26 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3567889999999999999999999998765554
No 383
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=2.3e-09 Score=76.95 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 3567889999999999999999999999765554
No 384
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.7e-08 Score=73.72 Aligned_cols=38 Identities=29% Similarity=0.226 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS 51 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~ 51 (170)
-....+..++++||||||||||++.|.|...++.|...
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~ 60 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence 34567889999999999999999999999988776443
No 385
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.92 E-value=9.2e-09 Score=73.95 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 56 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG 56 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 3567889999999999999999999998765554
No 386
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.92 E-value=1.3e-08 Score=72.07 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765544
No 387
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.92 E-value=8.2e-09 Score=70.10 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
....+.+++|+|++|+|||||+|.+.|...+..|
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 3456789999999999999999999999877665
No 388
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.92 E-value=6.6e-09 Score=74.27 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 3467889999999999999999999998765544
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.92 E-value=1.5e-08 Score=71.50 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999998765444
No 390
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.92 E-value=1.2e-08 Score=73.40 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG 55 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3567889999999999999999999998765444
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.91 E-value=8.7e-09 Score=76.14 Aligned_cols=61 Identities=31% Similarity=0.304 Sum_probs=41.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (170)
+..++++|++|+|||||+|+|+|......+... ...|.... .+.+ ....+++||||+.++.
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~--~~~~--~~~~~liDtPG~~~~~ 227 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE--LFPL--PGGGLLIDTPGFREFG 227 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE--EEEc--CCCCEEEECCCCCccC
Confidence 368999999999999999999998655444221 12333332 2322 2245899999997643
No 392
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.91 E-value=2.7e-08 Score=69.65 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 3567889999999999999999999998765544
No 393
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.91 E-value=1.4e-08 Score=71.57 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 3467889999999999999999999998765544
No 394
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.91 E-value=4.8e-09 Score=74.91 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3557789999999999999999999998765554
No 395
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-08 Score=80.10 Aligned_cols=134 Identities=22% Similarity=0.266 Sum_probs=85.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC-----------c--------e----------------------
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----------G--------V---------------------- 54 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~-----------~--------~---------------------- 54 (170)
+...-+|++.|.+.+||||++|+++.....+.+..+. | .
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 4455789999999999999999998655433332110 0 0
Q ss_pred eEEEeeEEEEeeCC------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 046239 55 TITCEMKTTVLKDG------QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRL 128 (170)
Q Consensus 55 t~~~~~~~~~~~~~------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l 128 (170)
........+.|+.+ ..+.++|.||+.-.. +...-+..+...+|+++||..+...++..+.+++...
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~s--------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~v 257 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS--------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKV 257 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCch--------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHh
Confidence 00000112222221 358899999998532 2222223345677999999999877777788887766
Q ss_pred HHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 129 PTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 129 ~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
.+. ..+++|+.||||.....++-.++..+
T Consensus 258 s~~-----KpniFIlnnkwDasase~ec~e~V~~ 286 (749)
T KOG0448|consen 258 SEE-----KPNIFILNNKWDASASEPECKEDVLK 286 (749)
T ss_pred hcc-----CCcEEEEechhhhhcccHHHHHHHHH
Confidence 654 24899999999988775433344333
No 396
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.91 E-value=1.5e-08 Score=68.28 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=60.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..++..++++|+||+|||||++.|+|...+..+................+ .....++.+ +.. -..+...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~-~~~i~~~~q---lS~-------G~~~r~~ 90 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVPQ---LSG-------GQRQRVA 90 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHH-HhceEEEee---CCH-------HHHHHHH
Confidence 45678999999999999999999999875443321111110000000000 112222322 111 1233444
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
.++.....++++++- ++...++...... .+.+.+.... ...+++++|.
T Consensus 91 l~~~l~~~~~i~ilD-Ep~~~lD~~~~~~l~~~l~~~~~~---~~tii~~sh~ 139 (157)
T cd00267 91 LARALLLNPDLLLLD-EPTSGLDPASRERLLELLRELAEE---GRTVIIVTHD 139 (157)
T ss_pred HHHHHhcCCCEEEEe-CCCcCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 555556667666653 3333565554433 3444443221 2578888876
No 397
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.4e-10 Score=85.58 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS 52 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~ 52 (170)
-.-.++.+|+|+|++||||||+++.++|...+..|....
T Consensus 359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~ 397 (573)
T COG4987 359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITL 397 (573)
T ss_pred eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeE
Confidence 346788999999999999999999999987777665443
No 398
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=3.7e-09 Score=79.90 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=40.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
..++++|+||+|||||||+|++......+... ..+|+...... + . ....|+||||+..+..
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~--l-~-~g~~liDTPG~~~~~l 239 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFE--L-P-NGGLLADTPGFNQPDL 239 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEE--C-C-CCcEEEeCCCcccccc
Confidence 46899999999999999999987644333211 11333333332 2 1 2348999999998765
No 399
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.91 E-value=2.3e-09 Score=86.31 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++.+++++|++|+|||||++.|+|...+..|.
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 34678899999999999999999999998766653
No 400
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=7.7e-09 Score=70.77 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=41.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF 80 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~ 80 (170)
....+++++|.+|+|||||+|.|++...... ....+.|....... . ...+.++||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~--~--~~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIK--I--SPGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEE--e--cCCEEEEECCCCC
Confidence 3457899999999999999999998665322 22334444444333 2 2568999999974
No 401
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=2.2e-09 Score=78.26 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCc----
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGS---- 86 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~---- 86 (170)
.-....+.+++++|+||+|||||++.+.+...++.|................. .+++...++.-+++.....-.
T Consensus 26 sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA 105 (339)
T COG1135 26 SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA 105 (339)
T ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhh
Confidence 34567789999999999999999999999988777643322211111100000 012223333333333211000
Q ss_pred ----------hHH---------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHH
Q 046239 87 ----------EFV---------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRL 128 (170)
Q Consensus 87 ----------~~~---------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l 128 (170)
.+. -++.+..+++...+|. ++++..++.-+++.. ..+++.|
T Consensus 106 ~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~-iLL~DEaTSALDP~TT~sIL~LL 184 (339)
T COG1135 106 FPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK-ILLCDEATSALDPETTQSILELL 184 (339)
T ss_pred hhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC-EEEecCccccCChHHHHHHHHHH
Confidence 000 2334444455556665 466777766666664 5566666
Q ss_pred HHHhcccccceEEEEEEcCCCC
Q 046239 129 PTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 129 ~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.++..+. .-+|+++||-..+
T Consensus 185 ~~In~~l--glTIvlITHEm~V 204 (339)
T COG1135 185 KDINREL--GLTIVLITHEMEV 204 (339)
T ss_pred HHHHHHc--CCEEEEEechHHH
Confidence 6654333 4789999997644
No 402
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.91 E-value=1.7e-08 Score=75.23 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||||||||++.|+|...+..|
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 59 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRG 59 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3567889999999999999999999998765544
No 403
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.91 E-value=1.5e-07 Score=72.71 Aligned_cols=124 Identities=17% Similarity=0.163 Sum_probs=70.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC------CccccccC-CCC-c-------eeEEE--eeEEEEe--------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG------RKAFKASA-GSS-G-------VTITC--EMKTTVL-------------- 65 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~------~~~~~~~~-~~~-~-------~t~~~--~~~~~~~-------------- 65 (170)
.+..+|+++|++|+||||++..|+. ....-... ... + ..... ..+....
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 4457899999999999999988872 21100000 000 0 00001 1111000
Q ss_pred --eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239 66 --KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV 143 (170)
Q Consensus 66 --~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (170)
..+..++|+||||.... ......++...... ..++.+++|+|+..+ .......+.+.+.. .+.-+|
T Consensus 178 ~~~~~~DvViIDTaGr~~~---d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~I 245 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQ---EDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVI 245 (429)
T ss_pred HHhCCCCEEEEECCCCCcc---hHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEE
Confidence 02457899999998753 23455555555433 367889999998633 22333344444322 478899
Q ss_pred EEcCCCCCC
Q 046239 144 FTGGDYLED 152 (170)
Q Consensus 144 ~tk~D~~~~ 152 (170)
+||.|....
T Consensus 246 lTKlD~~ar 254 (429)
T TIGR01425 246 ITKLDGHAK 254 (429)
T ss_pred EECccCCCC
Confidence 999997644
No 404
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.91 E-value=8.3e-09 Score=78.49 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~ 47 (170)
..++..++|+|+||||||||++.|+|...+..
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45678999999999999999999999887655
No 405
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.90 E-value=1.3e-08 Score=72.06 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3467889999999999999999999998765444
No 406
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.90 E-value=9.8e-09 Score=75.29 Aligned_cols=131 Identities=19% Similarity=0.213 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
.+...+.++|++||.+++|||||+++|++...+... ..-.|-.........+.++.+.+.||.||.+. ....
T Consensus 172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lpsg~~vlltDTvGFisd------LP~~ 243 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLPSGNFVLLTDTVGFISD------LPIQ 243 (410)
T ss_pred ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCCCCcEEEEeechhhhhh------CcHH
Confidence 344566689999999999999999999965443322 11122222223344557889999999999852 2222
Q ss_pred HHHHHHh---ccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhc--ccccceEEEEEEcCCCCC
Q 046239 93 IVKCIGL---AKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFG--KKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 93 ~~~~~~~---~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~ 151 (170)
++..+.. -...+|+++-|.|++++.-... ...+..|.++-- ......++-|-||.|.-.
T Consensus 244 LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 244 LVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 2322222 2346799999999985544443 455555555421 112235677888888653
No 407
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.90 E-value=1.4e-08 Score=72.61 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
-...++..++|+|+||+|||||++.|+|...+..|
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34567889999999999999999999998765554
No 408
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.90 E-value=2.9e-09 Score=76.95 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=41.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCC------CCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
+..++++|++|+|||||+|+|++......+.. ...+|+....... ...+++||||+.++..
T Consensus 120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-----~~~~liDtPG~~~~~l 186 (245)
T TIGR00157 120 NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-----HGGLIADTPGFNEFGL 186 (245)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-----CCcEEEeCCCccccCC
Confidence 35889999999999999999998754443311 1223444443332 2358999999987644
No 409
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=7.7e-09 Score=74.21 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4567789999999999999999999998765444
No 410
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.90 E-value=1.3e-08 Score=77.38 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G 53 (352)
T PRK11144 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKG 53 (352)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456789999999999999999999998766554
No 411
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=1.7e-08 Score=72.44 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3467899999999999999999999998776554
No 412
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=5.8e-09 Score=76.51 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 64 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSG 64 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4567889999999999999999999998765544
No 413
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=4.5e-09 Score=76.99 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||+|||||++.|+|...+..|
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G 64 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 467889999999999999999999998765544
No 414
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.89 E-value=3.8e-09 Score=75.17 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 59 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 3456789999999999999999999998765544
No 415
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.89 E-value=5.5e-09 Score=72.95 Aligned_cols=74 Identities=22% Similarity=0.104 Sum_probs=45.0
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCC
Q 046239 69 QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGD 148 (170)
Q Consensus 69 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D 148 (170)
..++++||||.... ......++..+.... .++-+++|++++.. ..+...+....+.+ ...-+++||.|
T Consensus 84 ~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~-----~~~~lIlTKlD 151 (196)
T PF00448_consen 84 YDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAF-----GIDGLILTKLD 151 (196)
T ss_dssp SSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHS-----STCEEEEESTT
T ss_pred CCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhcc-----cCceEEEEeec
Confidence 46999999999853 233445555555444 56788999998633 23333333333332 24567799999
Q ss_pred CCCCCh
Q 046239 149 YLEDNE 154 (170)
Q Consensus 149 ~~~~~~ 154 (170)
....-+
T Consensus 152 et~~~G 157 (196)
T PF00448_consen 152 ETARLG 157 (196)
T ss_dssp SSSTTH
T ss_pred CCCCcc
Confidence 876643
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.89 E-value=3.8e-08 Score=73.61 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC---CCce------------e--EEEeeEEEE---------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSGV------------T--ITCEMKTTV--------------- 64 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~---~~~~------------t--~~~~~~~~~--------------- 64 (170)
.++.+++++|++|+||||++..|++......+.. ..+. . .........
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998876543221100 0000 0 000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239 65 -LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL----AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139 (170)
Q Consensus 65 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (170)
...+..++++||||..... .....++..+.+. ....++..++|+++..+ ...........+.. ..
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~---~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNK---TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCC---HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence 0134579999999997643 2223333333322 12457788999998733 22222222222211 36
Q ss_pred EEEEEEcCCCCCC
Q 046239 140 MIVVFTGGDYLED 152 (170)
Q Consensus 140 ~ivv~tk~D~~~~ 152 (170)
.-+|+||.|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 7899999997644
No 417
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.89 E-value=1.6e-08 Score=76.85 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G 52 (354)
T TIGR02142 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG 52 (354)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 456789999999999999999999998766554
No 418
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.89 E-value=2.8e-09 Score=76.27 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4567788999999999999999999998765554
No 419
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.89 E-value=2e-08 Score=69.81 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||||||||++.|+|...+..|
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567789999999999999999999998765544
No 420
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.88 E-value=3.9e-09 Score=85.21 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|++|+|||||++.|+|...+..|
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 467889999999999999999999998876655
No 421
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.88 E-value=2.9e-08 Score=71.82 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G 54 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG 54 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC
Confidence 457889999999999999999999998766554
No 422
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.88 E-value=4.8e-08 Score=70.26 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G 76 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG 76 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 4567889999999999999999999998765544
No 423
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=3.9e-09 Score=75.82 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 56 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG 56 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3457889999999999999999999998765554
No 424
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.88 E-value=1.4e-08 Score=77.04 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 57 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG 57 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456789999999999999999999998776655
No 425
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.88 E-value=1.4e-08 Score=71.49 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++.+++|+|+||+|||||++.|+|...+..|
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 457789999999999999999999998765544
No 426
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.88 E-value=2.2e-09 Score=88.47 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..++.+++++|++|||||||++.|+|...+..|.
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 4568899999999999999999999998776654
No 427
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2.7e-08 Score=69.17 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
.....++.+.+++||+|||||||++.+-+.....
T Consensus 27 ~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~ 60 (253)
T COG1117 27 NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI 60 (253)
T ss_pred ceeccCCceEEEECCCCcCHHHHHHHHHhhcccC
Confidence 3456778899999999999999999988765433
No 428
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.88 E-value=7.2e-08 Score=66.34 Aligned_cols=61 Identities=20% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
...++..++++||+|||||||+|.+.|...+..|... .....++-+...+..++.-+++..
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~------l~~r~i~gPgaergvVFQ~~~LlP 87 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ------LNGRRIEGPGAERGVVFQNEALLP 87 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEE------ECCEeccCCCccceeEeccCccch
Confidence 4556778899999999999999999998775554322 222222222334555555555543
No 429
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.88 E-value=4.7e-09 Score=74.31 Aligned_cols=129 Identities=11% Similarity=0.022 Sum_probs=75.5
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHH---
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV--- 89 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~--- 89 (170)
..+..++...+++|+||+||||++++|+|...+..|...-...... +. . ..+..++-.-.|++.-....++.
T Consensus 22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~--~~--~-~~rIGyLPEERGLy~k~tv~dql~yl 96 (300)
T COG4152 22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS--QE--I-KNRIGYLPEERGLYPKMTVEDQLKYL 96 (300)
T ss_pred eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh--hh--h-hhhcccChhhhccCccCcHHHHHHHH
Confidence 4466788999999999999999999999987765543221110000 00 0 23444555555555421111111
Q ss_pred --------------------------------------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 046239 90 --------------------------------------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTL 131 (170)
Q Consensus 90 --------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~ 131 (170)
..+-+.++....+.|+++|+--+.+ ++++.+.+.++...-.
T Consensus 97 a~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS-GLDPVN~elLk~~I~~ 175 (300)
T COG4152 97 AELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS-GLDPVNVELLKDAIFE 175 (300)
T ss_pred HHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc-CCChhhHHHHHHHHHH
Confidence 2333444456678899888865555 6666655554443322
Q ss_pred hcccccceEEEEEEcCCC
Q 046239 132 FGKKIFDYMIVVFTGGDY 149 (170)
Q Consensus 132 ~~~~~~~~~ivv~tk~D~ 149 (170)
+. .+..+|+..||...
T Consensus 176 lk--~~GatIifSsH~Me 191 (300)
T COG4152 176 LK--EEGATIIFSSHRME 191 (300)
T ss_pred HH--hcCCEEEEecchHH
Confidence 22 22479999999764
No 430
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.88 E-value=8.9e-09 Score=77.94 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G 60 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 4467889999999999999999999998765544
No 431
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.87 E-value=1.6e-08 Score=72.89 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3467889999999999999999999998765544
No 432
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=2.5e-08 Score=70.64 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 20 ~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 52 (214)
T cd03297 20 DLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG 52 (214)
T ss_pred EEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3456 89999999999999999999998765554
No 433
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.87 E-value=2e-08 Score=76.40 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G 48 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG 48 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce
Confidence 4567889999999999999999999999876554
No 434
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.87 E-value=4.4e-09 Score=75.64 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG 57 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 3467889999999999999999999998765554
No 435
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.87 E-value=2.6e-09 Score=87.85 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++.+++++|++|+|||||++.|+|...+..|.
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~ 513 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 4578899999999999999999999998766653
No 436
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.87 E-value=1.1e-08 Score=73.50 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4567889999999999999999999998765544
No 437
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=6.4e-09 Score=76.61 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G 62 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3467889999999999999999999999766554
No 438
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=3.5e-08 Score=68.78 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=64.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc--ccccCCCCceeEEEeeEEE-EeeCCceEEEEeCCCCCCCCC-CchHH-
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGSSGVTITCEMKTT-VLKDGQVVNVIDTPGLFDSSA-GSEFV- 89 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~--~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~DtpG~~~~~~-~~~~~- 89 (170)
...++..++|+|+||+|||||++.|+|... +..|. ....-... ........++.+.+.+..... .+...
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~------i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 102 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE------ILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRF 102 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE------EEECCEehHHHhhhceEEecccCccccCCcHHHHHHH
Confidence 346778999999999999999999999642 22221 11110000 000122344444454433111 11110
Q ss_pred ----------HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcC
Q 046239 90 ----------GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 90 ----------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
..+.+..++....+++++++- ++...++.... .+++.+.+.. +. ..+++++||.
T Consensus 103 ~~~~~~LSgGe~qrv~la~al~~~p~vlllD-EP~~~LD~~~~~~l~~~l~~~~-~~--~~tiiivtH~ 167 (192)
T cd03232 103 SALLRGLSVEQRKRLTIGVELAAKPSILFLD-EPTSGLDSQAAYNIVRFLKKLA-DS--GQAILCTIHQ 167 (192)
T ss_pred HHHHhcCCHHHhHHHHHHHHHhcCCcEEEEe-CCCcCCCHHHHHHHHHHHHHHH-Hc--CCEEEEEEcC
Confidence 112233445566777766653 33346666654 3344454432 21 3688888887
No 439
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.86 E-value=2.3e-08 Score=70.13 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3567899999999999999999999998766554
No 440
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.86 E-value=6.1e-08 Score=69.46 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||+|||||++.|+|...+..|
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456789999999999999999999998765544
No 441
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.86 E-value=1.1e-09 Score=75.49 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G 54 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG 54 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3467889999999999999999999998765444
No 442
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.86 E-value=1.2e-08 Score=74.63 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 66 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 3467889999999999999999999998765544
No 443
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.86 E-value=3.7e-09 Score=69.73 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=78.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCc---eeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
-+++++++|.-=+|||||+=..+-.........+.. .+....... ....+.+|||.|...| -
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed----~ra~L~IWDTAGQErf-----------H 76 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED----CRADLHIWDTAGQERF-----------H 76 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc----ceeeeeeeeccchHhh-----------h
Confidence 357899999999999999876664432222221111 111111111 2456789999999853 2
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+-..++++.+.+|+|+|++++-+.+. +.+...|+..++... -++||.||.|+-+.
T Consensus 77 ALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 77 ALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE 133 (218)
T ss_pred ccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh
Confidence 223346788999999999986655553 566777888887663 78999999997544
No 444
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.1e-08 Score=81.99 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=88.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-----------------eCCceEEEEeCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-----------------KDGQVVNVIDTPG 78 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~l~DtpG 78 (170)
--..++++|+|.-.+|||-|+..|.+.....+... +.|..+....+.. ..-..+.+|||||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeag--gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAG--GITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcccccccccc--ceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 33557899999999999999999998765433222 2222221110000 0224588999999
Q ss_pred CCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC----Ch
Q 046239 79 LFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED----NE 154 (170)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~----~~ 154 (170)
+..|. ..-.+....+|.+|+|+|+.+++.++....++.|+... .|+||.+||+|.+-. .+
T Consensus 550 hEsFt-----------nlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rk-----tpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 550 HESFT-----------NLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRK-----TPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred chhhh-----------hhhhccccccceEEEEeehhccCCcchhHHHHHHHhcC-----CCeEEeehhhhhhcccccCCC
Confidence 98753 11123456679999999999999988888888777752 499999999998732 11
Q ss_pred hhHHHHhhhc
Q 046239 155 KTLEDYLGHE 164 (170)
Q Consensus 155 ~~~~~~~~~~ 164 (170)
..+.+.++++
T Consensus 614 ~~i~~~lkkQ 623 (1064)
T KOG1144|consen 614 APIVEALKKQ 623 (1064)
T ss_pred chHHHHHHHh
Confidence 3566666654
No 445
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=2.1e-08 Score=72.11 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4567889999999999999999999998765554
No 446
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.85 E-value=4.8e-08 Score=66.79 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=31.3
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.-+..++..+-++||||+|||||++.|++...++.|.
T Consensus 22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~ 58 (223)
T COG2884 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGK 58 (223)
T ss_pred eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCce
Confidence 3456777888999999999999999999998877663
No 447
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.85 E-value=3.7e-09 Score=75.49 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 69 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 3467889999999999999999999998765554
No 448
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.85 E-value=4.9e-08 Score=68.82 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++++|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4567889999999999999999999998765554
No 449
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.85 E-value=1.4e-08 Score=76.15 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=48.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS 86 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 86 (170)
....+++++|-+++|||||||+|++......+. .+|.|...+.... ...+.++||||+..+....
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~----~~~i~LlDtPGii~~~~~~ 194 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKL----DDGIYLLDTPGIIPPKFDD 194 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEc----CCCeEEecCCCcCCCCccc
Confidence 344789999999999999999999988755533 3466665554443 4458999999998655443
No 450
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.85 E-value=1e-09 Score=73.81 Aligned_cols=123 Identities=19% Similarity=0.096 Sum_probs=76.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+.+...+++++|.-++||||+|...|............+..-......+.. +..+..+|||.|..+| .
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~-Edvr~mlWdtagqeEf-----------D 83 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLI-EDVRSMLWDTAGQEEF-----------D 83 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhH-HHHHHHHHHhccchhH-----------H
Confidence 344557899999999999999999995443222111111111111111111 3456778999999864 3
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++++++.+-++|++-.++.+.+. ..+-+.+.... -..|+++|-||+|++++
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVED 139 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHh
Confidence 444567888889899999876655443 23333333332 22499999999999866
No 451
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.85 E-value=7.5e-09 Score=82.94 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++++|++|+|||||++.|+|...+..|
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3457889999999999999999999999876655
No 452
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.85 E-value=3.2e-08 Score=72.72 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG 57 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3567889999999999999999999998765554
No 453
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=3.1e-08 Score=71.18 Aligned_cols=33 Identities=30% Similarity=0.295 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G 54 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSG 54 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 467889999999999999999999998765554
No 454
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.85 E-value=3e-08 Score=74.94 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G 60 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3567889999999999999999999999876655
No 455
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.85 E-value=1.6e-08 Score=69.83 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..++++||..++|||+|+-+.+....+.... +.-. ..-...... .....+.+|||.|..+.+ +++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv-PTVF--dnys~~v~V~dg~~v~L~LwDTAGqedYD--------rlR-- 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYV-PTVF--DNYSANVTVDDGKPVELGLWDTAGQEDYD--------RLR-- 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCccccc-CeEE--ccceEEEEecCCCEEEEeeeecCCCcccc--------ccc--
Confidence 3678999999999999987776543322211 1101 111111112 133457899999999752 111
Q ss_pred HHhccCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQE--EEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...++..|++|+++++.++.+.+ ...++.++...... -|+++|.||.|+-++
T Consensus 71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD 124 (198)
T ss_pred -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC
Confidence 13678899999999997554444 35666666665432 399999999998754
No 456
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.84 E-value=2.1e-08 Score=73.47 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
.-...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 68 (267)
T PRK15112 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG 68 (267)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 345667889999999999999999999998766554
No 457
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.84 E-value=2.3e-08 Score=73.31 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3457789999999999999999999998765544
No 458
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.84 E-value=6.7e-08 Score=67.95 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G 60 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence 4567889999999999999999999998765554
No 459
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=1.5e-08 Score=74.44 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 3467899999999999999999999998765544
No 460
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.84 E-value=6.2e-08 Score=67.68 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3467889999999999999999999998765544
No 461
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.84 E-value=5.5e-09 Score=76.68 Aligned_cols=31 Identities=35% Similarity=0.330 Sum_probs=27.6
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
-...++.+++|+|++|+|||||+++|+|...
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 3567888999999999999999999999875
No 462
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.84 E-value=7.7e-09 Score=73.53 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 59 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4567889999999999999999999998765544
No 463
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.84 E-value=8.7e-08 Score=62.99 Aligned_cols=123 Identities=20% Similarity=0.078 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh-CCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...-+++++|--++|||.++..|+ |...+..+..+.-..+........-.....+.++||.|+... -.+
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~----------~~e 76 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG----------QQE 76 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc----------hhh
Confidence 345688999999999999997655 444332222111111111111111113467999999999863 111
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc---ccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG---KKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~ivv~tk~D~~~~ 152 (170)
+-+.+..-+|++++|.+..+. +..+.++.|...+. ++...|++++.|++|.-++
T Consensus 77 Lprhy~q~aDafVLVYs~~d~---eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 77 LPRHYFQFADAFVLVYSPMDP---ESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hhHhHhccCceEEEEecCCCH---HHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 222344556999999997633 44444444444443 3334499999999998544
No 464
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.83 E-value=2.9e-08 Score=76.42 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++||||+|||||++.|+|...+..|
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 467889999999999999999999998765554
No 465
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.83 E-value=5.4e-08 Score=68.96 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++.+++|+|+||||||||++.|+|...+..|.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 34567899999999999999999999987655553
No 466
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=9.5e-09 Score=75.62 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 59 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG 59 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4567889999999999999999999998765554
No 467
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=7.3e-09 Score=82.95 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=34.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t 55 (170)
-..+++.++++|||+|+||||+++.|.+.+.+..|....++.
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 346788999999999999999999999999888775544433
No 468
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4.2e-08 Score=72.70 Aligned_cols=121 Identities=16% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcc---cccc--CCCCceeEEEeeEEEEe--------eCCceEEEEeCCCCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKA---FKAS--AGSSGVTITCEMKTTVL--------KDGQVVNVIDTPGLFDS 82 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~---~~~~--~~~~~~t~~~~~~~~~~--------~~~~~~~l~DtpG~~~~ 82 (170)
...+.+++++|.-.||||||.++|..... ++.. ....+.|-......... .+...+.++|+||+..
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas- 82 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS- 82 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-
Confidence 34568999999999999999999875421 1111 12223333222222221 1234579999999975
Q ss_pred CCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+-++ ....-.|..++|+|+..+...+..+.+- +.+++ .++.+||+||.|.+.+
T Consensus 83 ------LIRtii----ggaqiiDlm~lviDv~kG~QtQtAEcLi-ig~~~----c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 83 ------LIRTII----GGAQIIDLMILVIDVQKGKQTQTAECLI-IGELL----CKKLVVVINKIDVLPE 137 (522)
T ss_pred ------HHHHHH----hhhheeeeeeEEEehhcccccccchhhh-hhhhh----ccceEEEEeccccccc
Confidence 222222 2344569999999998776666554442 23333 3478899999997755
No 469
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=4.6e-08 Score=74.87 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 74 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG 74 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3456789999999999999999999999876655
No 470
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.83 E-value=5.8e-09 Score=75.07 Aligned_cols=34 Identities=24% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 58 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG 58 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC
Confidence 4567899999999999999999999998765544
No 471
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.9e-09 Score=69.42 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=80.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCC--CceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGS--SGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~--~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
.+....++|+|+-+||||||+-++-....-.. +..+ .-.|.......+.. ....+.+||.-|...
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe~----------- 81 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQES----------- 81 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChHH-----------
Confidence 34557889999999999999977654332111 2211 12333344455555 477889999888863
Q ss_pred HHHHHHhccCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARN--RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.++++..++.-+|++++++|+.+ ++......+-..+.+..-+++ |+++..||.|+-+.
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~--p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGA--PVLVLANKQDLQNA 141 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCC--chhhhcchhhhhhh
Confidence 56667777788899999999974 333333333333333333343 99999999998766
No 472
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.83 E-value=3.2e-08 Score=71.84 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG 55 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567889999999999999999999998765544
No 473
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.83 E-value=5.3e-08 Score=70.98 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 3457789999999999999999999998765554
No 474
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.5e-08 Score=72.27 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
...++.+++|+|+||+|||||++.|+|...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346788999999999999999999999864
No 475
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.82 E-value=2.6e-08 Score=68.71 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=42.2
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
+-....+.+++++|+||+||||+++.|.+.-.++.|.....+... ..+.... .....++.+-.|++.
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~-~~~p~~v-rr~IGVl~~e~glY~ 88 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT-VRDPSFV-RRKIGVLFGERGLYA 88 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccc-ccChHHH-hhhcceecCCcChhh
Confidence 345677899999999999999999999988766655322111111 1111111 344455557777775
No 476
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.82 E-value=1.8e-08 Score=73.75 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 62 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG 62 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 3457889999999999999999999998765544
No 477
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.82 E-value=2.1e-08 Score=72.29 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 57 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG 57 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4567889999999999999999999998765544
No 478
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.82 E-value=1e-07 Score=67.94 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||+|||||++.|+|...+..|
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG 55 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 467889999999999999999999998765544
No 479
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.82 E-value=1.7e-08 Score=79.95 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCcee
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVT 55 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t 55 (170)
.....++.+|+++||||+|||||++.|.|...+..|....+.+
T Consensus 342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~ 384 (530)
T COG0488 342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET 384 (530)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc
Confidence 3446678899999999999999999998877655543333333
No 480
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.82 E-value=8.4e-08 Score=69.89 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 32 KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 3457889999999999999999999998765543
No 481
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.82 E-value=6.9e-08 Score=69.97 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||+|||||++.|+|...+..|
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG 58 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4567889999999999999999999998765444
No 482
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.82 E-value=4.1e-08 Score=70.74 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999998765544
No 483
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=2.1e-08 Score=70.81 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++...+++|++|+|||||++.+.|...+..|.
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~Ge 64 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGE 64 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence 56678899999999999999999999998877764
No 484
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.81 E-value=4.4e-09 Score=70.52 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
+..++..|++.||+|||||||++.++....++.|
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G 58 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG 58 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence 4567889999999999999999999988766655
No 485
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=4.8e-08 Score=75.18 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 50 ~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 50 AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 3567889999999999999999999998766554
No 486
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.81 E-value=3e-08 Score=78.88 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G 66 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467789999999999999999999998765544
No 487
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.81 E-value=1.6e-08 Score=71.86 Aligned_cols=108 Identities=20% Similarity=0.346 Sum_probs=72.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+++++|.+.+|||||+..++....... ...-.|-.+-...+.+ .+-.++++|.||+.+.....+-.+++.+.
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA--~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvia- 135 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAA--SYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIA- 135 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhh--ceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEE-
Confidence 3446899999999999999999998654222 2222333444444444 78899999999999876666655666553
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG 133 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~ 133 (170)
..+.+|+++.|+|+.. +...+..++.-.+..|
T Consensus 136 ---vArtaDlilMvLDatk--~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 136 ---VARTADLILMVLDATK--SEDQREILEKELEAVG 167 (364)
T ss_pred ---EeecccEEEEEecCCc--chhHHHHHHHHHHHhc
Confidence 3456699999999973 2334445544444344
No 488
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.81 E-value=8.2e-08 Score=74.01 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=66.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----cCCCC------------------ceeEEEeeEE-------EEe
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSS------------------GVTITCEMKT-------TVL 65 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----~~~~~------------------~~t~~~~~~~-------~~~ 65 (170)
...+.+++++|+||+||||++..|++...... +.... +......... ..+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l 267 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL 267 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh
Confidence 35678999999999999999998876421100 10000 0000000000 001
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT 145 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (170)
.+....++||+|..... .....++..+ .. ...++-.++|++++.. ..+ +..+...+.. ....-+++|
T Consensus 268 -~~~d~VLIDTaGrsqrd---~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~~---~~~~~~~f~~--~~~~~~I~T 334 (420)
T PRK14721 268 -RGKHMVLIDTVGMSQRD---QMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GDT---LDEVISAYQG--HGIHGCIIT 334 (420)
T ss_pred -cCCCEEEecCCCCCcch---HHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HHH---HHHHHHHhcC--CCCCEEEEE
Confidence 24568999999987521 2222233222 21 2335567888888622 222 2222233322 236688899
Q ss_pred cCCCCCCC
Q 046239 146 GGDYLEDN 153 (170)
Q Consensus 146 k~D~~~~~ 153 (170)
|.|....-
T Consensus 335 KlDEt~~~ 342 (420)
T PRK14721 335 KVDEAASL 342 (420)
T ss_pred eeeCCCCc
Confidence 99987554
No 489
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.81 E-value=6.7e-08 Score=70.16 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G 59 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG 59 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3467889999999999999999999998765444
No 490
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=1e-07 Score=66.99 Aligned_cols=30 Identities=27% Similarity=0.357 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
...++..++|+|+||+|||||++.|+|...
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 356778999999999999999999999875
No 491
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.80 E-value=3.4e-08 Score=72.24 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
-...++..++|+|+||+|||||++.|+|...+..|
T Consensus 32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 66 (265)
T TIGR02769 32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34567889999999999999999999998765554
No 492
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.80 E-value=1.1e-07 Score=72.19 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=70.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEE-------------------------------EEe
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKT-------------------------------TVL 65 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~-------------------------------~~~ 65 (170)
.++.+|++|||+|+||||.+-.|........+....+.-+ .+.++ ..+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT-tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT-TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE-eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 3488999999999999999988876543111111111000 00000 001
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT 145 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (170)
....++|+||.|...- ..+...++..++... ...-..+|++++.. .. -+..+.+.++.- ..--+++|
T Consensus 280 -~~~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K--~~---dlkei~~~f~~~--~i~~~I~T 346 (407)
T COG1419 280 -RDCDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK--YE---DLKEIIKQFSLF--PIDGLIFT 346 (407)
T ss_pred -hcCCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc--hH---HHHHHHHHhccC--CcceeEEE
Confidence 2357999999999853 244455555555433 33446777887621 12 223333334322 35578899
Q ss_pred cCCCCCCCh
Q 046239 146 GGDYLEDNE 154 (170)
Q Consensus 146 k~D~~~~~~ 154 (170)
|.|....-+
T Consensus 347 KlDET~s~G 355 (407)
T COG1419 347 KLDETTSLG 355 (407)
T ss_pred cccccCchh
Confidence 999886643
No 493
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=5e-08 Score=70.40 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++.+++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG 57 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4567889999999999999999999998765544
No 494
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=2.1e-08 Score=72.25 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 4567889999999999999999999998765444
No 495
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=4e-08 Score=71.34 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
...++.+++|+|+||+|||||++.|+|...+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 3567889999999999999999999998654
No 496
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.80 E-value=3.4e-08 Score=71.62 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
..++..++|+|+||+|||||++.|+|...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 46778999999999999999999999864
No 497
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.80 E-value=1e-08 Score=74.60 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||+|||||++.|+|...+..|
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 76 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG 76 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC
Confidence 457889999999999999999999998765544
No 498
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.80 E-value=7.7e-08 Score=73.10 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=67.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC-----CCC------------------ceeEEEeeEE-------EEe
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSS------------------GVTITCEMKT-------TVL 65 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-----~~~------------------~~t~~~~~~~-------~~~ 65 (170)
...+.+++++||+|+||||++..|........+. ... +......... ..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l 213 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL 213 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh
Confidence 4557899999999999999999987643211110 000 0000000000 011
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---ccceEEE
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK---IFDYMIV 142 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~iv 142 (170)
.+..++++||+|....+ . ...+.+..+.. ...+.-.++|+++....... .+.+.......+.. .....-+
T Consensus 214 -~~~DlVLIDTaG~~~~d---~-~l~e~La~L~~-~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQRD---R-TVSDQIAMLHG-ADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred -cCCCEEEEcCCCCCccc---H-HHHHHHHHHhc-cCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEE
Confidence 35678999999998532 2 22222222222 23344567888886332221 22333333332110 0013568
Q ss_pred EEEcCCCCCCCh
Q 046239 143 VFTGGDYLEDNE 154 (170)
Q Consensus 143 v~tk~D~~~~~~ 154 (170)
++||.|....-+
T Consensus 287 I~TKlDEt~~~G 298 (374)
T PRK14722 287 ILTKLDEASNLG 298 (374)
T ss_pred EEeccccCCCcc
Confidence 889999876543
No 499
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.79 E-value=3.6e-08 Score=71.37 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=28.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
...++..++|+|+||+|||||++.|+|...+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 45678899999999999999999999987654
No 500
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.79 E-value=2.8e-08 Score=75.98 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 46 ~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G 79 (382)
T TIGR03415 46 DIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG 79 (382)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3567789999999999999999999998776554
Done!