Query 046239
Match_columns 170
No_of_seqs 132 out of 1225
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:35:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 4.7E-24 1.6E-28 152.3 14.2 144 15-162 25-168 (239)
2 3lxw_A GTPase IMAP family memb 99.9 4.8E-23 1.7E-27 147.8 12.0 144 15-163 17-162 (247)
3 2xtp_A GTPase IMAP family memb 99.9 1.1E-21 3.8E-26 141.6 15.0 136 15-152 18-154 (260)
4 3def_A T7I23.11 protein; chlor 99.9 1.5E-20 5.3E-25 135.9 15.6 143 17-163 34-177 (262)
5 1h65_A Chloroplast outer envel 99.8 4E-20 1.4E-24 134.2 14.8 142 17-162 37-179 (270)
6 1wf3_A GTP-binding protein; GT 99.8 9.5E-19 3.2E-23 128.7 17.0 127 18-152 6-132 (301)
7 3iev_A GTP-binding protein ERA 99.8 4.5E-19 1.6E-23 130.9 14.1 129 14-150 5-135 (308)
8 4dhe_A Probable GTP-binding pr 99.8 8.8E-19 3E-23 123.3 14.1 132 16-152 26-159 (223)
9 1svi_A GTP-binding protein YSX 99.8 1.1E-17 3.7E-22 115.3 16.0 128 16-153 20-150 (195)
10 2lkc_A Translation initiation 99.8 1.5E-17 5.3E-22 112.8 14.4 127 16-161 5-131 (178)
11 2dyk_A GTP-binding protein; GT 99.8 1.1E-17 3.6E-22 111.8 13.1 122 20-152 2-123 (161)
12 2gj8_A MNME, tRNA modification 99.8 5.2E-18 1.8E-22 115.1 11.6 127 18-151 3-129 (172)
13 3pqc_A Probable GTP-binding pr 99.8 6.9E-17 2.4E-21 111.0 17.1 128 15-152 19-148 (195)
14 1mky_A Probable GTP-binding pr 99.8 1.2E-17 4.1E-22 128.8 13.5 123 20-151 2-124 (439)
15 2qu8_A Putative nucleolar GTP- 99.7 6.7E-17 2.3E-21 114.3 14.7 131 17-152 27-157 (228)
16 3t5d_A Septin-7; GTP-binding p 99.7 6.3E-17 2.2E-21 117.6 14.3 129 18-152 7-159 (274)
17 2gf9_A RAS-related protein RAB 99.7 5.7E-17 2E-21 111.3 12.6 128 10-152 13-142 (189)
18 1ksh_A ARF-like protein 2; sma 99.7 1.1E-16 3.8E-21 109.4 14.0 117 17-152 16-134 (186)
19 1z08_A RAS-related protein RAB 99.7 2.6E-17 8.9E-22 110.8 10.6 120 17-152 4-126 (170)
20 4bas_A ADP-ribosylation factor 99.7 6.2E-17 2.1E-21 111.7 12.4 122 13-152 11-142 (199)
21 1upt_A ARL1, ADP-ribosylation 99.7 1.9E-16 6.7E-21 106.6 13.9 117 17-152 5-123 (171)
22 1ek0_A Protein (GTP-binding pr 99.7 1.6E-17 5.6E-22 111.6 8.3 119 19-152 3-123 (170)
23 1z0j_A RAB-22, RAS-related pro 99.7 1.6E-17 5.4E-22 111.8 8.1 120 18-152 5-126 (170)
24 2hjg_A GTP-binding protein ENG 99.7 1.1E-17 3.8E-22 128.9 8.2 123 20-152 4-126 (436)
25 2efe_B Small GTP-binding prote 99.7 3.3E-17 1.1E-21 111.4 9.7 121 17-152 10-132 (181)
26 1z06_A RAS-related protein RAB 99.7 4.3E-17 1.5E-21 111.9 10.4 130 8-152 9-142 (189)
27 1zd9_A ADP-ribosylation factor 99.7 1.6E-16 5.4E-21 109.1 12.9 120 15-152 18-139 (188)
28 2fg5_A RAB-22B, RAS-related pr 99.7 2.8E-17 9.7E-22 113.2 9.1 122 16-151 20-142 (192)
29 4dcu_A GTP-binding protein ENG 99.7 9.9E-18 3.4E-22 129.8 7.5 125 18-152 22-146 (456)
30 3tw8_B RAS-related protein RAB 99.7 2.1E-16 7.2E-21 107.3 13.3 120 16-152 6-128 (181)
31 2hjg_A GTP-binding protein ENG 99.7 2.6E-17 8.9E-22 126.8 9.6 128 18-153 174-302 (436)
32 1zbd_A Rabphilin-3A; G protein 99.7 1.3E-16 4.4E-21 110.7 12.1 120 18-152 7-128 (203)
33 2bme_A RAB4A, RAS-related prot 99.7 7E-17 2.4E-21 110.3 10.4 120 17-152 8-130 (186)
34 1r2q_A RAS-related protein RAB 99.7 5.1E-17 1.8E-21 109.2 9.5 120 18-152 5-126 (170)
35 3tkl_A RAS-related protein RAB 99.7 4.8E-17 1.7E-21 112.0 9.4 121 17-153 14-137 (196)
36 2fh5_B SR-beta, signal recogni 99.7 2.2E-16 7.6E-21 110.4 12.8 120 16-152 4-130 (214)
37 2il1_A RAB12; G-protein, GDP, 99.7 3.3E-17 1.1E-21 112.9 8.4 122 15-152 22-146 (192)
38 2oil_A CATX-8, RAS-related pro 99.7 8.3E-17 2.8E-21 110.8 10.4 123 16-152 22-145 (193)
39 1z0f_A RAB14, member RAS oncog 99.7 3.9E-17 1.3E-21 110.7 8.6 121 17-152 13-135 (179)
40 3iby_A Ferrous iron transport 99.7 3.2E-16 1.1E-20 112.8 13.3 122 20-152 2-125 (256)
41 2bcg_Y Protein YP2, GTP-bindin 99.7 2.8E-16 9.5E-21 109.3 12.6 120 17-152 6-128 (206)
42 1ega_A Protein (GTP-binding pr 99.7 8.9E-17 3E-21 118.3 10.5 123 18-151 7-130 (301)
43 1r8s_A ADP-ribosylation factor 99.7 2.8E-16 9.6E-21 105.2 12.0 114 20-152 1-116 (164)
44 2a5j_A RAS-related protein RAB 99.7 1.2E-16 4.2E-21 109.8 10.4 121 16-152 18-141 (191)
45 3i8s_A Ferrous iron transport 99.7 2.2E-16 7.4E-21 114.8 12.1 123 19-152 3-127 (274)
46 4dcu_A GTP-binding protein ENG 99.7 1.1E-16 3.7E-21 124.0 11.2 127 16-153 192-322 (456)
47 3oes_A GTPase rhebl1; small GT 99.7 3.3E-16 1.1E-20 108.6 12.5 125 14-152 19-144 (201)
48 2g6b_A RAS-related protein RAB 99.7 3.6E-16 1.2E-20 106.2 12.5 121 17-152 8-131 (180)
49 3llu_A RAS-related GTP-binding 99.7 2.1E-16 7.1E-21 109.2 11.4 129 13-152 14-144 (196)
50 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.3E-16 4.5E-21 108.1 10.2 121 17-151 5-130 (177)
51 1m2o_B GTP-binding protein SAR 99.7 7.8E-16 2.7E-20 105.9 14.0 127 17-162 21-150 (190)
52 2erx_A GTP-binding protein DI- 99.7 7.5E-17 2.6E-21 108.6 8.7 122 18-152 2-124 (172)
53 2h57_A ADP-ribosylation factor 99.7 1.5E-16 5E-21 109.3 10.3 131 14-161 16-151 (190)
54 2h17_A ADP-ribosylation factor 99.7 1.5E-16 5.2E-21 108.5 10.1 129 14-161 16-147 (181)
55 3gee_A MNME, tRNA modification 99.7 2.7E-16 9.2E-21 122.1 12.4 127 18-153 232-359 (476)
56 2q3h_A RAS homolog gene family 99.7 7.3E-16 2.5E-20 106.7 13.4 123 12-152 13-139 (201)
57 1z2a_A RAS-related protein RAB 99.7 1.8E-16 6E-21 106.4 9.9 119 18-152 4-124 (168)
58 2p5s_A RAS and EF-hand domain 99.7 4.8E-17 1.6E-21 112.7 7.3 120 15-150 24-146 (199)
59 1zj6_A ADP-ribosylation factor 99.7 4.5E-16 1.5E-20 106.6 12.1 126 17-161 14-142 (187)
60 2nzj_A GTP-binding protein REM 99.7 3.7E-16 1.3E-20 105.6 11.5 121 18-152 3-126 (175)
61 3t1o_A Gliding protein MGLA; G 99.7 3E-16 1E-20 107.9 11.2 136 16-162 11-161 (198)
62 1moz_A ARL1, ADP-ribosylation 99.7 2E-15 6.9E-20 102.8 15.2 126 17-161 16-144 (183)
63 1fzq_A ADP-ribosylation factor 99.7 1.2E-15 4.1E-20 104.1 14.0 117 17-152 14-132 (181)
64 2ew1_A RAS-related protein RAB 99.7 2.1E-16 7.1E-21 109.9 10.2 120 17-152 24-146 (201)
65 3clv_A RAB5 protein, putative; 99.7 2.2E-16 7.4E-21 109.1 10.3 114 17-148 5-158 (208)
66 3cph_A RAS-related protein SEC 99.7 4E-16 1.4E-20 108.8 11.6 121 14-150 15-138 (213)
67 3bc1_A RAS-related protein RAB 99.7 7.4E-16 2.5E-20 105.7 12.8 123 17-152 9-142 (195)
68 3t5g_A GTP-binding protein RHE 99.7 7.3E-16 2.5E-20 104.9 12.5 119 18-152 5-126 (181)
69 1ky3_A GTP-binding protein YPT 99.7 1.6E-16 5.5E-21 107.9 9.1 123 17-152 6-133 (182)
70 2y8e_A RAB-protein 6, GH09086P 99.7 6.7E-17 2.3E-21 109.6 6.9 119 18-152 13-134 (179)
71 4djt_A GTP-binding nuclear pro 99.7 1.1E-16 3.9E-21 112.2 8.2 122 16-152 8-132 (218)
72 2b6h_A ADP-ribosylation factor 99.7 8.6E-16 2.9E-20 105.9 12.2 118 16-152 26-145 (192)
73 2bov_A RAla, RAS-related prote 99.7 9.8E-16 3.3E-20 106.2 12.6 121 16-152 11-134 (206)
74 3q72_A GTP-binding protein RAD 99.7 4.8E-16 1.6E-20 104.2 10.6 119 19-152 2-121 (166)
75 2x77_A ADP-ribosylation factor 99.7 9.8E-16 3.3E-20 105.1 12.3 117 17-152 20-138 (189)
76 2hup_A RAS-related protein RAB 99.7 2.3E-16 7.7E-21 109.6 9.2 120 17-152 27-149 (201)
77 1g16_A RAS-related protein SEC 99.7 1.7E-16 5.7E-21 106.7 8.3 117 19-151 3-122 (170)
78 2gf0_A GTP-binding protein DI- 99.7 2.6E-16 8.9E-21 108.6 9.4 124 16-152 5-129 (199)
79 2hxs_A RAB-26, RAS-related pro 99.7 5.8E-16 2E-20 104.9 10.8 123 16-152 3-130 (178)
80 3reg_A RHO-like small GTPase; 99.7 7.3E-16 2.5E-20 106.2 11.4 120 14-151 18-141 (194)
81 2o52_A RAS-related protein RAB 99.7 6.8E-17 2.3E-21 112.1 6.3 121 16-152 22-145 (200)
82 1u8z_A RAS-related protein RAL 99.7 8.5E-16 2.9E-20 102.9 11.4 119 18-152 3-124 (168)
83 1kao_A RAP2A; GTP-binding prot 99.7 4.6E-16 1.6E-20 104.1 10.0 118 19-152 3-123 (167)
84 2wji_A Ferrous iron transport 99.7 1.9E-15 6.4E-20 101.7 12.9 120 19-151 3-122 (165)
85 3r7w_A Gtpase1, GTP-binding pr 99.7 5.9E-16 2E-20 114.2 11.2 126 19-151 3-129 (307)
86 3q3j_B RHO-related GTP-binding 99.7 3.2E-16 1.1E-20 109.9 9.2 122 14-152 22-146 (214)
87 3geh_A MNME, tRNA modification 99.7 1.2E-16 4.1E-21 123.6 7.6 123 18-152 223-345 (462)
88 3k53_A Ferrous iron transport 99.7 1.8E-15 6.3E-20 109.7 13.4 120 19-150 3-122 (271)
89 1vg8_A RAS-related protein RAB 99.7 5.6E-16 1.9E-20 107.6 10.3 122 16-151 5-131 (207)
90 2f7s_A C25KG, RAS-related prot 99.7 3.9E-16 1.3E-20 109.4 9.3 119 17-152 23-156 (217)
91 1f6b_A SAR1; gtpases, N-termin 99.7 8.6E-16 2.9E-20 106.4 10.9 127 17-162 23-152 (198)
92 3a1s_A Iron(II) transport prot 99.7 2.7E-15 9.2E-20 108.1 13.8 121 18-151 4-124 (258)
93 2atx_A Small GTP binding prote 99.7 3.8E-15 1.3E-19 102.5 14.0 117 18-152 17-137 (194)
94 2a9k_A RAS-related protein RAL 99.7 1.3E-15 4.5E-20 103.8 11.5 120 17-152 16-138 (187)
95 2fu5_C RAS-related protein RAB 99.7 4.3E-16 1.5E-20 106.2 9.0 119 18-152 7-128 (183)
96 3cpj_B GTP-binding protein YPT 99.7 7E-16 2.4E-20 108.7 10.2 120 17-152 11-133 (223)
97 1mky_A Probable GTP-binding pr 99.7 5.6E-16 1.9E-20 119.5 10.5 128 18-153 179-308 (439)
98 3qq5_A Small GTP-binding prote 99.7 5.1E-16 1.7E-20 118.8 10.1 127 15-153 30-156 (423)
99 1x3s_A RAS-related protein RAB 99.7 1.7E-16 5.8E-21 109.1 6.7 120 18-151 14-135 (195)
100 2j1l_A RHO-related GTP-binding 99.7 3E-15 1E-19 104.8 13.2 118 17-152 32-153 (214)
101 1jwy_B Dynamin A GTPase domain 99.7 8.9E-16 3E-20 113.4 10.7 140 17-162 22-222 (315)
102 3dz8_A RAS-related protein RAB 99.7 9.7E-17 3.3E-21 110.4 5.2 121 17-152 21-143 (191)
103 1c1y_A RAS-related protein RAP 99.7 3.9E-16 1.3E-20 104.6 8.0 119 19-152 3-123 (167)
104 2fv8_A H6, RHO-related GTP-bin 99.6 1.9E-15 6.7E-20 105.2 11.7 117 18-152 24-144 (207)
105 4dsu_A GTPase KRAS, isoform 2B 99.6 4.8E-16 1.6E-20 106.3 8.5 119 18-152 3-124 (189)
106 3t34_A Dynamin-related protein 99.6 1.4E-15 4.7E-20 114.6 11.7 133 18-153 33-219 (360)
107 2gco_A H9, RHO-related GTP-bin 99.6 4.2E-15 1.4E-19 103.0 13.2 118 17-152 23-144 (201)
108 4gzl_A RAS-related C3 botulinu 99.6 1.7E-15 5.7E-20 105.4 11.2 120 15-152 26-149 (204)
109 3kkq_A RAS-related protein M-R 99.6 1.1E-15 3.7E-20 104.2 9.9 122 15-152 14-138 (183)
110 3con_A GTPase NRAS; structural 99.6 3.2E-15 1.1E-19 102.5 12.3 118 18-151 20-140 (190)
111 2ged_A SR-beta, signal recogni 99.6 4.8E-16 1.6E-20 106.9 8.1 123 16-153 45-172 (193)
112 2yc2_C IFT27, small RAB-relate 99.6 4.9E-16 1.7E-20 107.9 8.1 120 17-151 18-146 (208)
113 3q85_A GTP-binding protein REM 99.6 7E-16 2.4E-20 103.7 8.6 119 20-152 3-124 (169)
114 1mh1_A RAC1; GTP-binding, GTPa 99.6 3.8E-15 1.3E-19 101.5 12.4 117 18-152 4-124 (186)
115 3gj0_A GTP-binding nuclear pro 99.6 4.4E-16 1.5E-20 109.5 7.9 123 15-152 11-134 (221)
116 2wjg_A FEOB, ferrous iron tran 99.6 8E-15 2.7E-19 100.3 14.0 121 17-151 5-126 (188)
117 2fn4_A P23, RAS-related protei 99.6 1.3E-15 4.4E-20 103.4 9.7 121 16-152 6-129 (181)
118 4dkx_A RAS-related protein RAB 99.6 8.2E-16 2.8E-20 108.0 8.9 120 18-152 12-133 (216)
119 3p26_A Elongation factor 1 alp 99.6 1.7E-15 5.9E-20 118.0 11.6 121 17-153 31-187 (483)
120 1m7b_A RND3/RHOE small GTP-bin 99.6 1.3E-15 4.5E-20 104.1 9.5 118 17-151 5-125 (184)
121 3cbq_A GTP-binding protein REM 99.6 1.2E-15 4.3E-20 105.4 9.3 125 14-152 18-145 (195)
122 2qpt_A EH domain-containing pr 99.6 7.8E-16 2.7E-20 121.5 9.2 138 16-161 62-240 (550)
123 1nrj_B SR-beta, signal recogni 99.6 3.4E-15 1.2E-19 104.6 11.6 123 16-153 9-136 (218)
124 1xzp_A Probable tRNA modificat 99.6 6.1E-16 2.1E-20 120.2 8.4 121 19-152 243-365 (482)
125 4a9a_A Ribosome-interacting GT 99.6 1.8E-15 6.1E-20 113.9 10.4 123 19-150 72-195 (376)
126 2e87_A Hypothetical protein PH 99.6 1.8E-14 6.1E-19 108.4 15.7 128 17-152 165-295 (357)
127 3bwd_D RAC-like GTP-binding pr 99.6 9.5E-16 3.2E-20 104.3 7.8 120 17-152 6-127 (182)
128 3j2k_7 ERF3, eukaryotic polype 99.6 7.7E-15 2.6E-19 113.1 13.7 122 14-151 12-169 (439)
129 1lnz_A SPO0B-associated GTP-bi 99.6 7.7E-16 2.6E-20 114.9 7.8 126 21-152 160-289 (342)
130 2ce2_X GTPase HRAS; signaling 99.6 1.3E-15 4.5E-20 101.7 8.2 117 19-151 3-122 (166)
131 1gwn_A RHO-related GTP-binding 99.6 2.1E-15 7.2E-20 105.1 9.2 119 16-151 25-146 (205)
132 2qag_A Septin-2, protein NEDD5 99.6 9.9E-15 3.4E-19 109.9 13.5 129 18-152 36-189 (361)
133 2aka_B Dynamin-1; fusion prote 99.6 1.1E-14 3.6E-19 106.8 13.3 141 17-163 24-217 (299)
134 2atv_A RERG, RAS-like estrogen 99.6 2.5E-15 8.4E-20 103.7 9.4 120 16-152 25-147 (196)
135 1zun_B Sulfate adenylate trans 99.6 8.7E-15 3E-19 112.7 13.2 120 17-152 22-172 (434)
136 3o47_A ADP-ribosylation factor 99.6 3.7E-15 1.3E-19 110.9 10.7 116 18-152 164-281 (329)
137 3tr5_A RF-3, peptide chain rel 99.6 1.4E-15 4.9E-20 119.3 8.8 119 18-153 12-150 (528)
138 1pui_A ENGB, probable GTP-bind 99.6 1.5E-14 5.3E-19 100.6 13.2 129 15-152 22-152 (210)
139 3l0i_B RAS-related protein RAB 99.6 1.3E-16 4.3E-21 110.5 2.4 120 17-152 31-153 (199)
140 1wb1_A Translation elongation 99.6 5.4E-15 1.9E-19 115.1 11.7 118 18-152 18-140 (482)
141 3b1v_A Ferrous iron uptake tra 99.6 7.8E-15 2.7E-19 106.4 11.7 119 19-151 3-121 (272)
142 3c5c_A RAS-like protein 12; GD 99.6 8.3E-15 2.8E-19 100.5 11.2 122 16-152 18-142 (187)
143 2iwr_A Centaurin gamma 1; ANK 99.6 3.9E-15 1.3E-19 101.0 9.2 113 17-150 5-121 (178)
144 2j0v_A RAC-like GTP-binding pr 99.6 7.1E-15 2.4E-19 102.5 10.5 118 17-152 7-128 (212)
145 1d2e_A Elongation factor TU (E 99.6 1.2E-14 4E-19 110.8 12.5 117 18-151 2-133 (397)
146 3izq_1 HBS1P, elongation facto 99.6 9.9E-15 3.4E-19 116.5 12.4 122 16-153 164-321 (611)
147 2qtf_A Protein HFLX, GTP-bindi 99.6 3.4E-14 1.2E-18 107.0 13.5 125 20-152 180-307 (364)
148 3ihw_A Centg3; RAS, centaurin, 99.6 1.1E-14 3.9E-19 99.6 10.1 115 14-150 15-132 (184)
149 2zej_A Dardarin, leucine-rich 99.6 3E-15 1E-19 102.4 7.1 118 19-152 2-127 (184)
150 2h5e_A Peptide chain release f 99.6 1.3E-14 4.5E-19 114.0 11.5 120 17-153 11-150 (529)
151 1s0u_A EIF-2-gamma, translatio 99.6 7.7E-14 2.6E-18 106.6 15.5 122 16-152 5-150 (408)
152 2c78_A Elongation factor TU-A; 99.6 5.7E-15 1.9E-19 112.8 8.9 120 15-151 7-142 (405)
153 1kk1_A EIF2gamma; initiation o 99.6 1.9E-14 6.5E-19 110.1 11.8 123 15-152 6-152 (410)
154 3sjy_A Translation initiation 99.6 2.6E-14 8.8E-19 109.1 12.3 121 15-152 4-144 (403)
155 1f60_A Elongation factor EEF1A 99.6 4.2E-15 1.4E-19 115.1 8.0 120 17-152 5-160 (458)
156 1jny_A EF-1-alpha, elongation 99.6 1.3E-14 4.5E-19 111.7 10.6 119 17-151 4-158 (435)
157 2cxx_A Probable GTP-binding pr 99.6 1.4E-14 4.9E-19 99.0 9.5 125 20-153 2-138 (190)
158 3lvq_E ARF-GAP with SH3 domain 99.6 4E-14 1.4E-18 110.7 13.0 117 17-152 320-438 (497)
159 3izy_P Translation initiation 99.6 3.7E-16 1.3E-20 122.5 1.2 117 18-152 3-119 (537)
160 2xex_A Elongation factor G; GT 99.6 7.2E-14 2.5E-18 113.0 14.2 121 16-153 7-143 (693)
161 2x2e_A Dynamin-1; nitration, h 99.6 4.8E-14 1.7E-18 105.9 12.3 139 18-162 30-221 (353)
162 3vqt_A RF-3, peptide chain rel 99.6 7.6E-14 2.6E-18 110.1 13.5 120 18-154 30-169 (548)
163 2g3y_A GTP-binding protein GEM 99.6 6.4E-14 2.2E-18 98.0 11.5 121 18-152 36-160 (211)
164 1dar_A EF-G, elongation factor 99.5 1.7E-13 5.7E-18 110.9 15.5 121 16-153 9-145 (691)
165 3sop_A Neuronal-specific septi 99.5 4.7E-14 1.6E-18 102.2 10.3 129 19-153 2-156 (270)
166 2j69_A Bacterial dynamin-like 99.5 5E-14 1.7E-18 114.0 11.4 124 17-152 67-245 (695)
167 3zvr_A Dynamin-1; hydrolase, D 99.5 9.4E-14 3.2E-18 112.5 12.9 132 17-153 49-233 (772)
168 2qag_C Septin-7; cell cycle, c 99.5 2.6E-13 8.9E-18 103.7 14.6 131 16-152 28-182 (418)
169 2elf_A Protein translation elo 99.5 3.9E-14 1.3E-18 106.9 9.9 101 21-149 23-125 (370)
170 3th5_A RAS-related C3 botulinu 99.3 6.2E-16 2.1E-20 107.4 0.0 119 17-152 28-149 (204)
171 1zo1_I IF2, translation initia 99.5 6.6E-15 2.2E-19 114.6 5.6 116 18-152 3-118 (501)
172 2rdo_7 EF-G, elongation factor 99.5 3E-13 1E-17 109.6 15.0 121 16-153 7-150 (704)
173 2f9l_A RAB11B, member RAS onco 99.5 7.8E-14 2.7E-18 96.4 9.8 117 19-151 5-124 (199)
174 2wkq_A NPH1-1, RAS-related C3 99.5 2.1E-13 7.2E-18 101.0 12.0 118 17-152 153-274 (332)
175 2qag_B Septin-6, protein NEDD5 99.5 2.1E-13 7.4E-18 103.9 12.0 131 16-153 37-192 (427)
176 1g7s_A Translation initiation 99.5 7.9E-14 2.7E-18 110.8 9.9 116 18-151 4-136 (594)
177 3cb4_D GTP-binding protein LEP 99.5 2E-13 6.8E-18 108.5 12.1 119 19-153 4-139 (599)
178 2ywe_A GTP-binding protein LEP 99.5 4.4E-13 1.5E-17 106.4 13.6 120 18-153 5-141 (600)
179 1wxq_A GTP-binding protein; st 99.5 3.7E-13 1.3E-17 102.4 11.3 91 20-116 1-114 (397)
180 3avx_A Elongation factor TS, e 99.5 3.6E-13 1.2E-17 112.6 12.1 120 16-152 293-427 (1289)
181 2dy1_A Elongation factor G; tr 99.5 1E-12 3.6E-17 105.9 14.2 118 16-150 6-139 (665)
182 3r7w_B Gtpase2, GTP-binding pr 99.5 4.1E-13 1.4E-17 99.1 10.9 121 21-152 1-121 (331)
183 1oix_A RAS-related protein RAB 99.5 9.2E-13 3.2E-17 90.6 12.0 118 18-151 28-148 (191)
184 3mca_A HBS1, elongation factor 99.5 1.5E-14 5E-19 115.1 2.8 122 16-153 174-331 (592)
185 1r5b_A Eukaryotic peptide chai 99.5 2.1E-13 7.2E-18 105.8 8.9 119 17-151 41-195 (467)
186 3dpu_A RAB family protein; roc 99.5 2.9E-13 1E-17 106.7 9.5 122 16-153 38-166 (535)
187 1udx_A The GTP-binding protein 99.4 9.7E-13 3.3E-17 100.5 11.3 127 19-152 157-284 (416)
188 2cjw_A GTP-binding protein GEM 99.4 1.5E-13 5.1E-18 94.6 6.3 121 18-152 5-129 (192)
189 2qnr_A Septin-2, protein NEDD5 99.4 4E-12 1.4E-16 93.4 11.5 130 17-152 16-170 (301)
190 1n0u_A EF-2, elongation factor 99.4 9.1E-13 3.1E-17 108.6 8.9 118 17-150 17-163 (842)
191 4fn5_A EF-G 1, elongation fact 99.4 1.8E-11 6.3E-16 99.4 15.5 121 17-153 11-153 (709)
192 3j25_A Tetracycline resistance 99.4 1.5E-12 5.3E-17 104.5 7.7 118 20-154 3-136 (638)
193 3h2y_A GTPase family protein; 99.3 7.5E-14 2.6E-18 105.3 -0.9 125 19-153 160-289 (368)
194 3ec1_A YQEH GTPase; atnos1, at 99.3 6.1E-14 2.1E-18 105.8 -2.1 134 19-163 162-301 (369)
195 3szr_A Interferon-induced GTP- 99.3 2.2E-11 7.4E-16 97.3 11.8 129 20-152 46-229 (608)
196 3c5h_A Glucocorticoid receptor 99.2 1.1E-11 3.6E-16 89.1 5.7 49 103-152 162-213 (255)
197 1jal_A YCHF protein; nucleotid 99.2 9.7E-12 3.3E-16 93.2 5.6 91 19-115 2-108 (363)
198 2www_A Methylmalonic aciduria 99.2 1.7E-11 5.9E-16 91.8 6.7 26 17-42 72-97 (349)
199 2ohf_A Protein OLA1, GTP-bindi 99.2 2.6E-11 9E-16 91.7 7.6 95 14-114 17-127 (396)
200 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.1E-11 1.4E-15 90.8 8.5 96 13-114 14-126 (392)
201 1tq4_A IIGP1, interferon-induc 99.2 2.7E-10 9.2E-15 86.9 11.5 119 19-150 69-188 (413)
202 2qm8_A GTPase/ATPase; G protei 99.1 1.3E-11 4.3E-16 92.1 1.9 27 16-42 52-78 (337)
203 1f5n_A Interferon-induced guan 99.1 2.5E-10 8.7E-15 90.4 9.3 108 17-130 36-147 (592)
204 2dby_A GTP-binding protein; GD 99.1 1.2E-10 4.2E-15 87.6 7.2 90 20-115 2-111 (368)
205 2p67_A LAO/AO transport system 99.1 1.9E-10 6.4E-15 85.9 8.0 27 16-42 53-79 (341)
206 2j37_W Signal recognition part 99.1 1.5E-09 5E-14 84.8 12.2 122 17-152 99-255 (504)
207 3p32_A Probable GTPase RV1496/ 99.1 2.8E-10 9.6E-15 85.4 7.4 25 17-41 77-101 (355)
208 1yrb_A ATP(GTP)binding protein 99.1 1E-09 3.5E-14 78.7 9.7 31 10-40 5-35 (262)
209 3fvq_A Fe(3+) IONS import ATP- 99.1 8.7E-10 3E-14 82.5 9.2 33 16-48 27-59 (359)
210 1puj_A YLQF, conserved hypothe 99.0 5.8E-10 2E-14 81.2 8.0 66 17-87 118-183 (282)
211 1vpl_A ABC transporter, ATP-bi 99.0 5E-10 1.7E-14 80.4 7.0 33 16-48 38-70 (256)
212 3nh6_A ATP-binding cassette SU 99.0 2.2E-11 7.7E-16 89.4 -0.1 33 16-48 77-109 (306)
213 3tui_C Methionine import ATP-b 99.0 8.9E-10 3E-14 82.6 7.9 34 15-48 50-83 (366)
214 4g1u_C Hemin import ATP-bindin 99.0 2.6E-10 8.8E-15 82.3 4.7 33 16-48 34-66 (266)
215 3rlf_A Maltose/maltodextrin im 99.0 9.2E-10 3.1E-14 83.0 7.6 33 16-48 26-58 (381)
216 3tif_A Uncharacterized ABC tra 99.0 5.1E-10 1.7E-14 79.4 5.8 34 15-48 27-60 (235)
217 2nq2_C Hypothetical ABC transp 99.0 2.6E-09 8.8E-14 76.6 9.4 32 16-47 28-59 (253)
218 2ff7_A Alpha-hemolysin translo 99.0 1.3E-10 4.3E-15 83.1 2.4 33 16-48 32-64 (247)
219 1rj9_A FTSY, signal recognitio 99.0 3.6E-09 1.2E-13 77.7 9.8 129 17-152 100-262 (304)
220 2yyz_A Sugar ABC transporter, 99.0 2.3E-09 8E-14 80.3 8.9 33 16-48 26-58 (359)
221 2pcj_A ABC transporter, lipopr 99.0 1.1E-08 3.8E-13 72.0 11.7 33 16-48 27-59 (224)
222 1g29_1 MALK, maltose transport 99.0 4.4E-09 1.5E-13 79.3 10.1 33 16-48 26-58 (372)
223 1oxx_K GLCV, glucose, ABC tran 99.0 2.1E-09 7.2E-14 80.5 8.1 33 16-48 28-60 (353)
224 3gfo_A Cobalt import ATP-bindi 99.0 7.8E-10 2.7E-14 80.1 5.6 33 16-48 31-63 (275)
225 1ji0_A ABC transporter; ATP bi 99.0 1.4E-09 4.8E-14 77.4 6.7 33 16-48 29-61 (240)
226 2ixe_A Antigen peptide transpo 99.0 3.2E-10 1.1E-14 82.1 3.3 34 15-48 41-74 (271)
227 2it1_A 362AA long hypothetical 98.9 2.9E-09 1E-13 79.9 8.3 33 16-48 26-58 (362)
228 2olj_A Amino acid ABC transpor 98.9 1.5E-09 5E-14 78.2 6.3 33 16-48 47-79 (263)
229 1z47_A CYSA, putative ABC-tran 98.9 2.6E-09 9E-14 79.9 7.9 33 16-48 38-70 (355)
230 2onk_A Molybdate/tungstate ABC 98.9 1E-09 3.4E-14 78.1 5.3 31 17-48 23-53 (240)
231 2pze_A Cystic fibrosis transme 98.9 3.4E-09 1.2E-13 74.8 7.9 33 16-48 31-63 (229)
232 1v43_A Sugar-binding transport 98.9 3.1E-09 1.1E-13 80.0 7.7 33 16-48 34-66 (372)
233 3b5x_A Lipid A export ATP-bind 98.9 1.8E-09 6.1E-14 86.0 6.4 34 16-49 366-399 (582)
234 2cbz_A Multidrug resistance-as 98.9 1.4E-08 4.6E-13 72.1 10.0 33 16-48 28-60 (237)
235 1sgw_A Putative ABC transporte 98.9 8.4E-09 2.9E-13 72.1 8.2 33 16-48 32-64 (214)
236 2yhs_A FTSY, cell division pro 98.9 5.5E-09 1.9E-13 81.0 7.6 128 15-152 289-453 (503)
237 1mv5_A LMRA, multidrug resista 98.9 1.1E-09 3.6E-14 78.1 3.3 34 15-48 24-57 (243)
238 3d31_A Sulfate/molybdate ABC t 98.9 3.9E-09 1.3E-13 78.8 6.4 33 16-48 23-55 (348)
239 3qf4_B Uncharacterized ABC tra 98.9 6.5E-10 2.2E-14 88.8 2.3 33 16-48 378-410 (598)
240 2ghi_A Transport protein; mult 98.9 2.7E-09 9.3E-14 76.8 5.3 31 15-45 42-72 (260)
241 3cnl_A YLQF, putative uncharac 98.8 2.5E-09 8.7E-14 77.0 4.9 60 20-84 100-159 (262)
242 3e70_C DPA, signal recognition 98.8 5.1E-09 1.7E-13 77.7 6.6 124 17-152 127-283 (328)
243 3b9q_A Chloroplast SRP recepto 98.8 2.1E-08 7.2E-13 73.6 9.7 130 16-152 97-261 (302)
244 2og2_A Putative signal recogni 98.8 3.1E-08 1.1E-12 74.3 10.6 131 15-152 153-318 (359)
245 2qi9_C Vitamin B12 import ATP- 98.8 1.5E-09 5.1E-14 77.6 3.3 31 16-46 23-53 (249)
246 4a82_A Cystic fibrosis transme 98.8 1.6E-09 5.6E-14 86.2 3.8 33 16-48 364-396 (578)
247 3qf4_A ABC transporter, ATP-bi 98.8 6.5E-10 2.2E-14 88.6 1.5 33 16-48 366-398 (587)
248 3dm5_A SRP54, signal recogniti 98.8 2.3E-08 7.8E-13 76.7 8.7 123 18-152 99-254 (443)
249 2pjz_A Hypothetical protein ST 98.8 5.3E-09 1.8E-13 75.3 4.8 29 19-48 30-58 (263)
250 2bbs_A Cystic fibrosis transme 98.8 2.3E-08 7.8E-13 73.0 8.0 33 16-48 61-93 (290)
251 1b0u_A Histidine permease; ABC 98.8 6.8E-08 2.3E-12 69.5 10.4 34 15-48 28-61 (262)
252 3b60_A Lipid A export ATP-bind 98.8 1.8E-09 6.2E-14 86.0 1.7 33 16-48 366-398 (582)
253 1t9h_A YLOQ, probable GTPase E 98.8 2.7E-09 9.3E-14 78.4 2.5 62 17-83 171-238 (307)
254 3kl4_A SRP54, signal recogniti 98.7 2.2E-08 7.4E-13 76.8 7.4 125 17-152 95-253 (433)
255 3gd7_A Fusion complex of cysti 98.7 1.1E-09 3.6E-14 83.0 -0.6 29 16-44 44-72 (390)
256 4f4c_A Multidrug resistance pr 98.7 3E-09 1E-13 91.6 1.8 34 16-49 1102-1135(1321)
257 4fid_A G protein alpha subunit 98.7 7.2E-08 2.5E-12 71.7 8.5 81 60-152 153-243 (340)
258 2yv5_A YJEQ protein; hydrolase 98.7 3.9E-08 1.3E-12 72.2 6.6 62 18-82 164-229 (302)
259 1ye8_A Protein THEP1, hypothet 98.7 8.3E-08 2.8E-12 65.1 7.7 23 21-43 2-24 (178)
260 2yl4_A ATP-binding cassette SU 98.7 1.2E-08 4.1E-13 81.5 4.0 33 16-48 367-399 (595)
261 2v3c_C SRP54, signal recogniti 98.7 1.5E-08 5E-13 77.9 4.2 123 18-152 98-253 (432)
262 4f4c_A Multidrug resistance pr 98.7 3.1E-09 1.1E-13 91.5 0.2 33 16-48 441-473 (1321)
263 3g5u_A MCG1178, multidrug resi 98.6 6.2E-09 2.1E-13 89.5 1.9 33 16-48 413-445 (1284)
264 3ohm_A Guanine nucleotide-bind 98.6 1.7E-07 5.7E-12 69.4 9.0 80 60-151 159-248 (327)
265 1u0l_A Probable GTPase ENGC; p 98.6 3.1E-08 1.1E-12 72.7 4.8 63 18-82 168-234 (301)
266 2wsm_A Hydrogenase expression/ 98.6 3.4E-08 1.2E-12 68.9 4.7 25 18-42 29-53 (221)
267 1cip_A Protein (guanine nucleo 98.6 1.3E-07 4.3E-12 70.9 6.9 78 61-150 186-273 (353)
268 3bk7_A ABC transporter ATP-bin 98.6 1.3E-06 4.4E-11 69.9 13.1 34 17-50 380-413 (607)
269 4gp7_A Metallophosphoesterase; 98.6 2.2E-08 7.4E-13 67.5 2.2 24 17-40 7-30 (171)
270 3ozx_A RNAse L inhibitor; ATP 98.5 1.3E-06 4.5E-11 68.9 12.4 33 17-49 292-324 (538)
271 1yqt_A RNAse L inhibitor; ATP- 98.5 1.8E-06 6.3E-11 68.1 13.0 34 17-50 310-343 (538)
272 3j16_B RLI1P; ribosome recycli 98.5 1.2E-06 4.1E-11 70.0 12.0 31 19-49 378-408 (608)
273 2rcn_A Probable GTPase ENGC; Y 98.5 4.2E-08 1.4E-12 73.4 3.4 62 18-82 214-281 (358)
274 2pt7_A CAG-ALFA; ATPase, prote 98.5 4.3E-07 1.5E-11 67.5 7.9 31 18-48 170-200 (330)
275 1vma_A Cell division protein F 98.5 1.6E-07 5.4E-12 69.0 5.4 127 16-152 101-264 (306)
276 3q5d_A Atlastin-1; G protein, 98.5 7.6E-07 2.6E-11 68.5 9.3 26 17-42 65-90 (447)
277 3g5u_A MCG1178, multidrug resi 98.5 1E-07 3.5E-12 82.0 4.8 33 16-48 1056-1088(1284)
278 1g6h_A High-affinity branched- 98.5 9.4E-08 3.2E-12 68.6 3.7 34 15-48 29-62 (257)
279 2yz2_A Putative ABC transporte 98.4 1.3E-07 4.5E-12 68.2 3.8 34 15-48 29-62 (266)
280 2ihy_A ABC transporter, ATP-bi 98.4 1.3E-07 4.4E-12 68.7 3.7 33 16-48 44-76 (279)
281 2px0_A Flagellar biosynthesis 98.4 4E-07 1.4E-11 66.6 6.4 123 17-152 103-254 (296)
282 1j8m_F SRP54, signal recogniti 98.4 1.9E-06 6.5E-11 63.0 9.7 123 19-152 98-254 (297)
283 1htw_A HI0065; nucleotide-bind 98.4 1.8E-07 6.2E-12 62.2 3.5 33 16-49 30-62 (158)
284 2d2e_A SUFC protein; ABC-ATPas 98.4 2.5E-07 8.5E-12 66.1 3.6 27 16-42 26-52 (250)
285 1znw_A Guanylate kinase, GMP k 98.4 2E-07 6.7E-12 64.6 3.0 29 15-43 16-44 (207)
286 2zu0_C Probable ATP-dependent 98.3 3.1E-07 1.1E-11 66.2 3.9 27 16-42 43-69 (267)
287 3jvv_A Twitching mobility prot 98.3 2.7E-06 9.1E-11 63.8 8.5 30 17-46 121-150 (356)
288 1zu4_A FTSY; GTPase, signal re 98.3 1.2E-06 4.2E-11 64.7 6.4 127 16-152 102-269 (320)
289 3b85_A Phosphate starvation-in 98.3 1.8E-07 6.3E-12 65.0 1.9 33 17-50 20-52 (208)
290 1lvg_A Guanylate kinase, GMP k 98.3 2.8E-07 9.7E-12 63.5 2.4 26 18-43 3-28 (198)
291 1s96_A Guanylate kinase, GMP k 98.3 4E-07 1.4E-11 63.8 3.1 30 15-44 12-41 (219)
292 3tr0_A Guanylate kinase, GMP k 98.3 4.8E-07 1.7E-11 62.2 3.2 27 17-43 5-31 (205)
293 3a00_A Guanylate kinase, GMP k 98.3 3.5E-07 1.2E-11 62.3 2.4 25 20-44 2-26 (186)
294 1z6g_A Guanylate kinase; struc 98.2 4.4E-07 1.5E-11 63.5 2.6 29 15-43 19-47 (218)
295 2xxa_A Signal recognition part 98.2 2.1E-05 7.3E-10 60.4 12.1 124 17-152 98-255 (433)
296 1kgd_A CASK, peripheral plasma 98.2 6.6E-07 2.2E-11 60.6 3.0 26 18-43 4-29 (180)
297 3ozx_A RNAse L inhibitor; ATP 98.2 1.1E-06 3.6E-11 69.4 4.6 36 14-49 20-55 (538)
298 2ffh_A Protein (FFH); SRP54, s 98.2 2E-06 6.8E-11 65.8 6.0 123 18-152 97-252 (425)
299 1zp6_A Hypothetical protein AT 98.2 9.6E-07 3.3E-11 60.1 3.8 28 15-42 5-32 (191)
300 3c8u_A Fructokinase; YP_612366 98.2 6.7E-07 2.3E-11 62.0 3.1 29 16-44 19-47 (208)
301 1yqt_A RNAse L inhibitor; ATP- 98.2 1.3E-06 4.3E-11 69.0 4.2 35 15-49 43-77 (538)
302 3lnc_A Guanylate kinase, GMP k 98.2 5.3E-07 1.8E-11 63.5 1.8 28 16-43 24-52 (231)
303 3j16_B RLI1P; ribosome recycli 98.2 1.6E-06 5.6E-11 69.2 4.7 36 15-50 99-134 (608)
304 2eyu_A Twitching motility prot 98.2 6.5E-07 2.2E-11 64.4 2.1 31 16-46 22-52 (261)
305 2v9p_A Replication protein E1; 98.1 1.4E-06 4.9E-11 63.8 3.3 29 15-43 122-150 (305)
306 3thx_A DNA mismatch repair pro 98.1 3.9E-05 1.3E-09 64.1 12.1 23 17-39 660-682 (934)
307 4ido_A Atlastin-1; GTPase, GTP 98.1 5.8E-05 2E-09 58.0 12.2 126 17-148 65-220 (457)
308 3asz_A Uridine kinase; cytidin 98.1 1.2E-06 4.2E-11 60.6 2.7 26 17-42 4-29 (211)
309 3bk7_A ABC transporter ATP-bin 98.1 2E-06 6.8E-11 68.8 4.2 35 15-49 113-147 (607)
310 3aez_A Pantothenate kinase; tr 98.1 1.9E-06 6.6E-11 63.5 3.4 30 16-45 87-116 (312)
311 2gza_A Type IV secretion syste 98.1 2.1E-06 7E-11 64.6 3.5 31 18-48 174-204 (361)
312 4eun_A Thermoresistant glucoki 98.1 2.1E-06 7.1E-11 59.1 3.1 28 15-42 25-52 (200)
313 3tau_A Guanylate kinase, GMP k 98.1 2.7E-06 9.2E-11 58.9 3.5 28 17-44 6-33 (208)
314 2i3b_A HCR-ntpase, human cance 98.0 1.9E-06 6.6E-11 58.9 2.6 28 20-48 2-29 (189)
315 3ney_A 55 kDa erythrocyte memb 98.0 2.7E-06 9.3E-11 58.5 3.3 29 15-43 15-43 (197)
316 2bbw_A Adenylate kinase 4, AK4 98.0 2.8E-06 9.6E-11 60.3 3.5 28 19-46 27-57 (246)
317 2npi_A Protein CLP1; CLP1-PCF1 98.0 1.6E-06 5.6E-11 67.1 2.2 32 17-48 136-167 (460)
318 1ewq_A DNA mismatch repair pro 98.0 4.2E-05 1.4E-09 62.7 10.5 26 19-44 576-601 (765)
319 4e22_A Cytidylate kinase; P-lo 98.0 3.3E-06 1.1E-10 60.3 3.6 31 17-47 25-58 (252)
320 2j41_A Guanylate kinase; GMP, 98.0 3.2E-06 1.1E-10 58.1 3.3 27 17-43 4-30 (207)
321 2jeo_A Uridine-cytidine kinase 98.0 3.2E-06 1.1E-10 60.0 3.1 28 15-42 21-48 (245)
322 3thx_B DNA mismatch repair pro 98.0 5E-05 1.7E-09 63.3 9.8 27 16-42 670-696 (918)
323 2ehv_A Hypothetical protein PH 98.0 5.1E-06 1.7E-10 58.7 3.5 26 15-40 26-51 (251)
324 4a74_A DNA repair and recombin 97.9 3.7E-06 1.3E-10 58.7 2.7 28 15-42 21-48 (231)
325 2bdt_A BH3686; alpha-beta prot 97.9 3.8E-06 1.3E-10 57.1 2.4 22 20-41 3-24 (189)
326 3euj_A Chromosome partition pr 97.9 4.9E-06 1.7E-10 64.6 3.0 29 20-48 30-58 (483)
327 3uie_A Adenylyl-sulfate kinase 97.9 5.9E-06 2E-10 56.8 3.0 27 17-43 23-49 (200)
328 1sq5_A Pantothenate kinase; P- 97.9 6E-06 2.1E-10 60.7 3.2 27 16-42 77-103 (308)
329 1p9r_A General secretion pathw 97.9 4.7E-06 1.6E-10 63.8 2.5 29 17-45 165-193 (418)
330 1knq_A Gluconate kinase; ALFA/ 97.9 8.6E-06 2.9E-10 54.6 3.6 25 17-41 6-30 (175)
331 2oap_1 GSPE-2, type II secreti 97.9 5.9E-06 2E-10 64.8 3.1 29 18-46 259-287 (511)
332 2vp4_A Deoxynucleoside kinase; 97.9 9E-06 3.1E-10 57.1 3.7 28 15-42 16-43 (230)
333 1lw7_A Transcriptional regulat 97.9 4.3E-06 1.5E-10 62.8 1.8 29 19-47 170-198 (365)
334 2ewv_A Twitching motility prot 97.9 7.2E-06 2.5E-10 61.8 3.0 30 16-45 133-162 (372)
335 1kag_A SKI, shikimate kinase I 97.9 7.5E-06 2.6E-10 54.7 2.7 24 19-42 4-27 (173)
336 2iw3_A Elongation factor 3A; a 97.8 4.7E-06 1.6E-10 69.6 2.0 33 16-48 696-728 (986)
337 2obl_A ESCN; ATPase, hydrolase 97.8 6.4E-06 2.2E-10 61.5 2.3 31 15-45 67-97 (347)
338 2o8b_B DNA mismatch repair pro 97.8 0.00015 5.2E-09 61.2 10.5 25 19-44 789-813 (1022)
339 2qor_A Guanylate kinase; phosp 97.8 1.4E-05 4.9E-10 55.0 3.2 27 16-42 9-35 (204)
340 2dpy_A FLII, flagellum-specifi 97.8 9.3E-06 3.2E-10 62.5 2.4 32 15-46 153-184 (438)
341 3tqc_A Pantothenate kinase; bi 97.8 1.5E-05 5.2E-10 58.8 3.4 27 16-42 89-115 (321)
342 1wb9_A DNA mismatch repair pro 97.8 0.00018 6.2E-09 59.3 10.0 27 17-43 605-631 (800)
343 2kjq_A DNAA-related protein; s 97.7 1.2E-05 4E-10 52.9 2.3 27 18-44 35-61 (149)
344 3ec2_A DNA replication protein 97.7 1.1E-05 3.8E-10 54.4 2.2 27 18-44 37-63 (180)
345 2f1r_A Molybdopterin-guanine d 97.7 5.7E-06 1.9E-10 55.7 0.5 26 20-45 3-28 (171)
346 2qt1_A Nicotinamide riboside k 97.7 3E-05 1E-09 53.4 4.0 29 15-43 17-45 (207)
347 1rz3_A Hypothetical protein rb 97.7 1.9E-05 6.6E-10 54.3 3.0 26 16-41 19-44 (201)
348 1zcb_A G alpha I/13; GTP-bindi 97.7 7.7E-05 2.6E-09 56.0 6.4 79 60-150 193-281 (362)
349 1cke_A CK, MSSA, protein (cyti 97.7 2.1E-05 7.1E-10 54.8 2.9 24 19-42 5-28 (227)
350 1ex7_A Guanylate kinase; subst 97.7 6.3E-06 2.2E-10 56.2 0.1 21 22-42 4-24 (186)
351 3kta_A Chromosome segregation 97.6 3.1E-05 1.1E-09 52.1 3.3 22 21-42 28-49 (182)
352 1jjv_A Dephospho-COA kinase; P 97.6 3E-05 1E-09 53.3 3.3 23 20-42 3-25 (206)
353 3vaa_A Shikimate kinase, SK; s 97.6 3.7E-05 1.3E-09 52.7 3.6 26 16-41 22-47 (199)
354 1odf_A YGR205W, hypothetical 3 97.6 3.6E-05 1.2E-09 56.0 3.5 29 15-43 27-55 (290)
355 1nij_A Hypothetical protein YJ 97.6 3E-05 1E-09 57.2 2.9 25 19-43 4-28 (318)
356 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 4.7E-05 1.6E-09 49.9 3.5 21 20-40 24-44 (149)
357 2w0m_A SSO2452; RECA, SSPF, un 97.6 3.5E-05 1.2E-09 53.6 3.0 28 16-43 20-47 (235)
358 1np6_A Molybdopterin-guanine d 97.6 3.6E-05 1.2E-09 51.8 2.8 24 19-42 6-29 (174)
359 2if2_A Dephospho-COA kinase; a 97.6 3.2E-05 1.1E-09 53.1 2.5 22 20-41 2-23 (204)
360 2iw3_A Elongation factor 3A; a 97.6 3.4E-05 1.2E-09 64.6 3.0 27 16-42 458-484 (986)
361 1sxj_E Activator 1 40 kDa subu 97.6 0.00032 1.1E-08 52.1 8.0 21 21-41 38-58 (354)
362 1cr0_A DNA primase/helicase; R 97.5 4E-05 1.4E-09 55.8 2.9 31 15-45 31-61 (296)
363 1azs_C GS-alpha; complex (lyas 97.5 0.00015 5E-09 55.2 6.0 80 60-151 209-298 (402)
364 2x8a_A Nuclear valosin-contain 97.5 3.7E-05 1.3E-09 55.5 2.5 21 22-42 47-67 (274)
365 4dzz_A Plasmid partitioning pr 97.5 0.00022 7.4E-09 48.8 6.3 82 68-163 75-156 (206)
366 3t61_A Gluconokinase; PSI-biol 97.5 6.2E-05 2.1E-09 51.6 3.5 23 19-41 18-40 (202)
367 3qf7_A RAD50; ABC-ATPase, ATPa 97.5 5.6E-05 1.9E-09 56.8 3.5 20 21-40 25-44 (365)
368 1qhl_A Protein (cell division 97.5 3.2E-06 1.1E-10 59.5 -3.1 29 20-48 28-56 (227)
369 4b4t_L 26S protease subunit RP 97.5 0.0017 5.9E-08 49.9 11.6 26 17-42 213-238 (437)
370 3lw7_A Adenylate kinase relate 97.5 6.3E-05 2.2E-09 49.9 3.2 20 20-39 2-21 (179)
371 1ly1_A Polynucleotide kinase; 97.5 7E-05 2.4E-09 50.1 3.3 22 20-41 3-24 (181)
372 3cm0_A Adenylate kinase; ATP-b 97.5 6.6E-05 2.2E-09 50.6 3.1 23 18-40 3-25 (186)
373 2yvu_A Probable adenylyl-sulfa 97.5 0.0001 3.4E-09 49.9 4.0 29 14-42 8-36 (186)
374 3kb2_A SPBC2 prophage-derived 97.5 6.9E-05 2.4E-09 49.7 3.1 21 21-41 3-23 (173)
375 2pez_A Bifunctional 3'-phospho 97.5 6.5E-05 2.2E-09 50.5 3.0 25 18-42 4-28 (179)
376 1svm_A Large T antigen; AAA+ f 97.5 6.9E-05 2.4E-09 56.5 3.4 27 16-42 166-192 (377)
377 2qz4_A Paraplegin; AAA+, SPG7, 97.5 0.0016 5.5E-08 46.1 10.3 25 17-41 37-61 (262)
378 4b4t_K 26S protease regulatory 97.5 0.0013 4.6E-08 50.3 10.4 25 17-41 204-228 (428)
379 1qhx_A CPT, protein (chloramph 97.5 9.1E-05 3.1E-09 49.6 3.5 23 19-41 3-25 (178)
380 2wwf_A Thymidilate kinase, put 97.4 0.00012 4E-09 50.4 4.0 26 16-41 7-32 (212)
381 2cdn_A Adenylate kinase; phosp 97.4 0.00011 3.8E-09 50.2 3.8 26 16-41 17-42 (201)
382 1kht_A Adenylate kinase; phosp 97.4 9.5E-05 3.3E-09 49.9 3.4 23 19-41 3-25 (192)
383 1gvn_B Zeta; postsegregational 97.4 0.00011 3.6E-09 53.5 3.8 26 16-41 30-55 (287)
384 1n0w_A DNA repair protein RAD5 97.4 7.9E-05 2.7E-09 52.3 3.0 26 16-41 21-46 (243)
385 2cvh_A DNA repair and recombin 97.4 8.4E-05 2.9E-09 51.3 3.1 26 16-41 17-42 (220)
386 1ixz_A ATP-dependent metallopr 97.4 6.4E-05 2.2E-09 53.4 2.5 22 22-43 52-73 (254)
387 2hf9_A Probable hydrogenase ni 97.4 9.5E-05 3.3E-09 51.4 3.3 25 18-42 37-61 (226)
388 3ux8_A Excinuclease ABC, A sub 97.4 6E-05 2.1E-09 61.0 2.5 25 16-40 345-369 (670)
389 1y63_A LMAJ004144AAA protein; 97.4 0.00014 4.7E-09 49.2 3.9 26 17-42 8-33 (184)
390 2rhm_A Putative kinase; P-loop 97.4 0.00011 3.6E-09 49.8 3.3 24 18-41 4-27 (193)
391 3h4m_A Proteasome-activating n 97.4 0.0012 4.2E-08 47.4 9.0 26 17-42 49-74 (285)
392 1aky_A Adenylate kinase; ATP:A 97.4 0.00012 4.1E-09 50.8 3.5 25 17-41 2-26 (220)
393 1in4_A RUVB, holliday junction 97.4 8.4E-05 2.9E-09 55.1 2.8 24 20-43 52-75 (334)
394 3trf_A Shikimate kinase, SK; a 97.4 0.00013 4.3E-09 49.2 3.3 23 19-41 5-27 (185)
395 3nwj_A ATSK2; P loop, shikimat 97.4 9.2E-05 3.1E-09 52.8 2.7 23 19-41 48-70 (250)
396 4aby_A DNA repair protein RECN 97.4 2.3E-05 8E-10 59.7 -0.5 25 16-41 58-82 (415)
397 3iij_A Coilin-interacting nucl 97.3 0.00016 5.4E-09 48.6 3.7 23 18-40 10-32 (180)
398 4b4t_H 26S protease regulatory 97.3 0.0019 6.4E-08 49.9 9.9 26 17-42 241-266 (467)
399 4b4t_I 26S protease regulatory 97.3 0.0026 8.8E-08 48.7 10.5 26 17-42 214-239 (437)
400 4b4t_J 26S protease regulatory 97.3 0.0026 8.9E-08 48.3 10.4 26 17-42 180-205 (405)
401 1iy2_A ATP-dependent metallopr 97.3 9.4E-05 3.2E-09 53.3 2.5 22 22-43 76-97 (278)
402 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.9E-09 49.6 3.2 21 21-41 2-22 (205)
403 1zd8_A GTP:AMP phosphotransfer 97.3 0.00013 4.5E-09 50.9 3.1 23 18-40 6-28 (227)
404 3qks_A DNA double-strand break 97.3 0.00016 5.5E-09 49.8 3.5 21 20-40 24-44 (203)
405 2plr_A DTMP kinase, probable t 97.3 0.00016 5.4E-09 49.6 3.5 23 19-41 4-26 (213)
406 1ukz_A Uridylate kinase; trans 97.3 0.00022 7.5E-09 48.8 4.1 26 15-40 11-36 (203)
407 1tf7_A KAIC; homohexamer, hexa 97.3 7.3E-05 2.5E-09 58.8 1.9 30 15-44 35-66 (525)
408 2c95_A Adenylate kinase 1; tra 97.3 0.00016 5.5E-09 49.0 3.4 24 18-41 8-31 (196)
409 2v54_A DTMP kinase, thymidylat 97.3 0.00018 6.1E-09 49.1 3.7 25 18-42 3-27 (204)
410 1xjc_A MOBB protein homolog; s 97.3 0.00017 5.9E-09 48.2 3.4 24 19-42 4-27 (169)
411 2p5t_B PEZT; postsegregational 97.3 0.00012 4.1E-09 52.1 2.7 27 15-41 28-54 (253)
412 1nlf_A Regulatory protein REPA 97.3 0.00012 4.1E-09 52.8 2.7 28 15-42 26-53 (279)
413 1uf9_A TT1252 protein; P-loop, 97.3 0.00017 5.9E-09 49.1 3.4 26 17-42 6-31 (203)
414 1tev_A UMP-CMP kinase; ploop, 97.3 0.00017 5.7E-09 48.8 3.3 22 19-40 3-24 (196)
415 3ux8_A Excinuclease ABC, A sub 97.3 0.00013 4.6E-09 59.0 3.2 22 15-36 40-61 (670)
416 1nks_A Adenylate kinase; therm 97.3 0.00016 5.3E-09 48.9 3.0 22 20-41 2-23 (194)
417 1w1w_A Structural maintenance 97.3 0.00014 4.8E-09 55.8 3.0 26 18-43 25-50 (430)
418 2xtz_A Guanine nucleotide-bind 97.3 0.00034 1.2E-08 52.4 4.9 72 68-150 182-263 (354)
419 1nn5_A Similar to deoxythymidy 97.3 0.0002 6.7E-09 49.3 3.4 25 17-41 7-31 (215)
420 1vht_A Dephospho-COA kinase; s 97.2 0.00022 7.6E-09 49.4 3.7 23 19-41 4-26 (218)
421 2ze6_A Isopentenyl transferase 97.2 0.00018 6.2E-09 51.2 3.2 21 21-41 3-23 (253)
422 1m7g_A Adenylylsulfate kinase; 97.2 0.00017 5.9E-09 49.8 3.0 27 16-42 22-48 (211)
423 3fb4_A Adenylate kinase; psych 97.2 0.00019 6.3E-09 49.6 3.1 20 21-40 2-21 (216)
424 3cr8_A Sulfate adenylyltranfer 97.2 7.2E-05 2.5E-09 59.2 1.1 29 16-44 366-394 (552)
425 1via_A Shikimate kinase; struc 97.2 0.00018 6E-09 48.1 2.9 21 21-41 6-26 (175)
426 3qkt_A DNA double-strand break 97.2 0.0002 6.9E-09 53.2 3.5 21 20-40 24-44 (339)
427 4eaq_A DTMP kinase, thymidylat 97.2 0.00027 9.3E-09 49.6 4.0 27 16-42 23-49 (229)
428 3umf_A Adenylate kinase; rossm 97.2 0.00029 1E-08 49.1 4.1 27 15-41 25-51 (217)
429 4b4t_M 26S protease regulatory 97.2 0.0012 4.2E-08 50.6 7.8 26 17-42 213-238 (434)
430 3tlx_A Adenylate kinase 2; str 97.2 0.00023 7.9E-09 50.4 3.6 25 17-41 27-51 (243)
431 1zak_A Adenylate kinase; ATP:A 97.2 0.0002 6.9E-09 49.8 3.1 24 18-41 4-27 (222)
432 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.005 1.7E-07 45.3 10.7 26 17-42 43-68 (322)
433 3dl0_A Adenylate kinase; phosp 97.2 0.00021 7.4E-09 49.3 3.1 21 21-41 2-22 (216)
434 2o5v_A DNA replication and rep 97.2 0.00017 5.8E-09 54.1 2.7 21 21-41 28-48 (359)
435 1q3t_A Cytidylate kinase; nucl 97.2 0.00027 9.1E-09 49.7 3.6 28 14-41 11-38 (236)
436 1qf9_A UMP/CMP kinase, protein 97.2 0.0003 1E-08 47.4 3.8 23 19-41 6-28 (194)
437 3r20_A Cytidylate kinase; stru 97.2 0.00026 8.8E-09 49.9 3.4 23 18-40 8-30 (233)
438 1e69_A Chromosome segregation 97.2 0.00021 7.3E-09 52.7 3.0 20 21-40 26-45 (322)
439 1pzn_A RAD51, DNA repair and r 97.2 0.00019 6.6E-09 53.6 2.7 28 16-43 128-155 (349)
440 2bwj_A Adenylate kinase 5; pho 97.1 0.00027 9.2E-09 48.0 3.2 23 19-41 12-34 (199)
441 1uj2_A Uridine-cytidine kinase 97.1 0.0003 1E-08 50.0 3.4 27 15-41 18-44 (252)
442 1gtv_A TMK, thymidylate kinase 97.1 8.8E-05 3E-09 51.1 0.6 22 21-42 2-23 (214)
443 1ak2_A Adenylate kinase isoenz 97.1 0.00036 1.2E-08 48.9 3.7 27 15-41 12-38 (233)
444 2f6r_A COA synthase, bifunctio 97.1 0.00069 2.4E-08 49.0 5.0 24 17-40 73-96 (281)
445 2iyv_A Shikimate kinase, SK; t 97.1 0.00029 9.9E-09 47.4 2.8 22 20-41 3-24 (184)
446 1lv7_A FTSH; alpha/beta domain 97.1 0.00034 1.1E-08 49.7 3.2 24 19-42 45-68 (257)
447 2vli_A Antibiotic resistance p 97.1 0.00025 8.5E-09 47.6 2.4 22 19-40 5-26 (183)
448 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00039 1.3E-08 49.7 3.5 23 19-41 4-26 (260)
449 2ce7_A Cell division protein F 97.1 0.0045 1.5E-07 48.1 9.5 23 20-42 50-72 (476)
450 2pt5_A Shikimate kinase, SK; a 97.1 0.0004 1.4E-08 45.9 3.2 21 21-41 2-22 (168)
451 2z0h_A DTMP kinase, thymidylat 97.0 0.00038 1.3E-08 47.2 3.1 21 21-41 2-22 (197)
452 1e4v_A Adenylate kinase; trans 97.0 0.00035 1.2E-08 48.3 2.9 21 21-41 2-22 (214)
453 2pbr_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 46.8 3.2 21 21-41 2-22 (195)
454 1e6c_A Shikimate kinase; phosp 97.0 0.00038 1.3E-08 46.2 2.9 22 20-41 3-24 (173)
455 3sr0_A Adenylate kinase; phosp 97.0 0.00041 1.4E-08 47.9 3.1 21 21-41 2-22 (206)
456 2xb4_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 48.2 3.2 21 21-41 2-22 (223)
457 1jbk_A CLPB protein; beta barr 97.0 0.00058 2E-08 45.6 3.6 25 18-42 42-66 (195)
458 3be4_A Adenylate kinase; malar 97.0 0.00046 1.6E-08 47.8 2.9 23 19-41 5-27 (217)
459 3vfd_A Spastin; ATPase, microt 96.9 0.0068 2.3E-07 45.7 9.5 24 18-41 147-170 (389)
460 1zuh_A Shikimate kinase; alpha 96.9 0.00067 2.3E-08 44.9 3.2 22 20-41 8-29 (168)
461 2dr3_A UPF0273 protein PH0284; 96.9 0.00064 2.2E-08 47.6 3.3 25 16-40 20-44 (247)
462 3bos_A Putative DNA replicatio 96.9 0.00069 2.4E-08 47.1 3.4 25 18-42 51-75 (242)
463 1tf7_A KAIC; homohexamer, hexa 96.9 0.00048 1.6E-08 54.2 2.8 30 15-44 277-306 (525)
464 1ls1_A Signal recognition part 96.9 0.0006 2E-08 49.7 3.0 123 18-152 97-252 (295)
465 3cf2_A TER ATPase, transitiona 96.9 0.0076 2.6E-07 49.7 9.7 73 16-114 235-307 (806)
466 3m6a_A ATP-dependent protease 96.9 0.00054 1.8E-08 54.2 3.0 26 18-43 107-132 (543)
467 3cf0_A Transitional endoplasmi 96.9 0.00062 2.1E-08 49.6 3.1 26 17-42 47-72 (301)
468 1puj_A YLQF, conserved hypothe 96.9 0.001 3.5E-08 48.2 4.2 62 74-152 4-65 (282)
469 2w58_A DNAI, primosome compone 96.9 0.00075 2.6E-08 46.0 3.3 24 20-43 55-78 (202)
470 1a7j_A Phosphoribulokinase; tr 96.9 0.00041 1.4E-08 50.5 2.1 24 18-41 4-27 (290)
471 3b9p_A CG5977-PA, isoform A; A 96.9 0.00065 2.2E-08 49.2 3.1 24 18-41 53-76 (297)
472 1ltq_A Polynucleotide kinase; 96.8 0.00073 2.5E-08 49.1 3.3 22 20-41 3-24 (301)
473 3exa_A TRNA delta(2)-isopenten 96.8 0.00083 2.8E-08 49.3 3.5 24 19-42 3-26 (322)
474 2grj_A Dephospho-COA kinase; T 96.8 0.00077 2.6E-08 46.0 3.1 25 17-41 10-34 (192)
475 3ake_A Cytidylate kinase; CMP 96.8 0.00076 2.6E-08 46.0 3.1 21 21-41 4-24 (208)
476 3a8t_A Adenylate isopentenyltr 96.8 0.00097 3.3E-08 49.4 3.8 25 19-43 40-64 (339)
477 2qmh_A HPR kinase/phosphorylas 96.8 0.00099 3.4E-08 45.7 3.5 25 18-42 33-57 (205)
478 3foz_A TRNA delta(2)-isopenten 96.8 0.001 3.5E-08 48.8 3.8 25 18-42 9-33 (316)
479 2p65_A Hypothetical protein PF 96.8 0.00072 2.5E-08 45.0 2.7 25 18-42 42-66 (187)
480 4fcw_A Chaperone protein CLPB; 96.8 0.00097 3.3E-08 48.5 3.6 27 17-43 45-71 (311)
481 3zvl_A Bifunctional polynucleo 96.8 0.0012 3.9E-08 50.5 4.1 27 16-42 255-281 (416)
482 3t15_A Ribulose bisphosphate c 96.8 0.0015 5.1E-08 47.5 4.5 27 16-42 33-59 (293)
483 3auy_A DNA double-strand break 96.8 0.00088 3E-08 50.4 3.3 21 20-40 26-46 (371)
484 3lda_A DNA repair protein RAD5 96.7 0.00089 3E-08 50.9 3.2 25 16-40 175-199 (400)
485 3v9p_A DTMP kinase, thymidylat 96.7 0.00092 3.1E-08 46.9 3.0 27 15-41 21-47 (227)
486 3d3q_A TRNA delta(2)-isopenten 96.7 0.00096 3.3E-08 49.6 3.1 23 20-42 8-30 (340)
487 3n70_A Transport activator; si 96.7 0.0012 4.2E-08 42.7 3.3 25 18-42 23-47 (145)
488 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00096 3.3E-08 50.4 3.2 26 18-43 34-59 (392)
489 3crm_A TRNA delta(2)-isopenten 96.7 0.0011 3.9E-08 48.8 3.4 23 20-42 6-28 (323)
490 1r6b_X CLPA protein; AAA+, N-t 96.7 0.0053 1.8E-07 50.3 7.6 25 18-42 206-230 (758)
491 3u61_B DNA polymerase accessor 96.7 0.05 1.7E-06 39.7 12.2 22 20-41 49-70 (324)
492 3eph_A TRNA isopentenyltransfe 96.7 0.0011 3.8E-08 50.3 3.2 23 19-41 2-24 (409)
493 1zcb_A G alpha I/13; GTP-bindi 96.7 0.0013 4.4E-08 49.4 3.5 23 17-39 31-53 (362)
494 3lv8_A DTMP kinase, thymidylat 96.6 0.0013 4.5E-08 46.3 3.3 30 12-41 20-49 (236)
495 1qvr_A CLPB protein; coiled co 96.6 0.0046 1.6E-07 51.5 7.0 25 19-43 191-215 (854)
496 3syl_A Protein CBBX; photosynt 96.6 0.0016 5.5E-08 47.3 3.8 27 17-43 65-91 (309)
497 2ygr_A Uvrabc system protein A 96.6 0.00088 3E-08 56.2 2.5 25 16-40 665-689 (993)
498 1p5z_B DCK, deoxycytidine kina 96.6 0.0011 3.8E-08 47.3 2.6 26 17-42 22-47 (263)
499 2qby_A CDC6 homolog 1, cell di 96.5 0.0012 4.1E-08 49.2 2.7 27 17-43 43-69 (386)
500 2dhr_A FTSH; AAA+ protein, hex 96.5 0.001 3.5E-08 52.0 2.4 22 21-42 66-87 (499)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=152.30 Aligned_cols=144 Identities=40% Similarity=0.715 Sum_probs=99.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+.....+|+|+|++|+|||||+|+|+|......+....+.|..+......+ .+..+.+|||||+.++.........++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 345568999999999999999999999876544433334555555555666 7789999999999987666666677888
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
..+.....++|++++|+++. +++..+...+..+.+.++.....|+++|+||+|++.. ..+++++.
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~ 168 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR 168 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH
Confidence 88878888999999999997 6777788888888887776555699999999999876 35555544
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=4.8e-23 Score=147.81 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=100.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc-hHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEI 93 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~ 93 (170)
+..+..+|+|+|.+|+|||||+|+|++...........+.|..+......+ .+..+.|+||||+.+..... +....++
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 345678999999999999999999999876544433434555555555666 78899999999998643322 2233444
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccc-cceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKI-FDYMIVVFTGGDYLEDNEKTLEDYLGH 163 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ivv~tk~D~~~~~~~~~~~~~~~ 163 (170)
...+......+|++|+|+++. +++..+..+++++.+.++... ..|++++.||+|+... +++++++.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~---~~~~~l~~ 162 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG---SLHDYVSN 162 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC---CHHHHHhh
Confidence 444444568999999999998 688889999999999887643 3488999999998665 56666543
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.1e-21 Score=141.57 Aligned_cols=136 Identities=34% Similarity=0.560 Sum_probs=103.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+..+..+|+|+|++|+|||||+|+|++...........+.|.........+ .+..+.++||||+.++..........+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 344568999999999999999999998765443333322444444445555 6789999999999987766665666667
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE-cCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT-GGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t-k~D~~~~ 152 (170)
..+......+|++++|+++. +++..+..+++++.+.++.....|.++|+| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 77667788999999999998 588888888899998877654568888888 9998854
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=1.5e-20 Score=135.85 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=103.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|.+|+|||||+|+|++........ ..+.|.........+ .+..+.++||||+.++..........+..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 356899999999999999999999876432221 223344444444555 678999999999988755444444434333
Q ss_pred HHhccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239 97 IGLAKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH 163 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~ 163 (170)
+ ...++|++++|++++ .+++..+..+++.+.+.++.....|+++|+||+|+...+...+++++++
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 3 235789999998875 3577778889999999888776679999999999865544567777654
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.85 E-value=4e-20 Score=134.22 Aligned_cols=142 Identities=23% Similarity=0.359 Sum_probs=97.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|.+|+|||||+|+|++........ ..+.+.......... .+..+.++||||+.++..........+..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence 346799999999999999999999876432221 222333333333444 677899999999987644333333333222
Q ss_pred HHhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 97 IGLAKGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
+ ...++|++++|++++. .++..+..+++.+.+.++...+.|+++|+||+|+....+.+++++++
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred h--hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence 1 2457899999988753 57777888888898887766556999999999987654335555543
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=9.5e-19 Score=128.75 Aligned_cols=127 Identities=23% Similarity=0.208 Sum_probs=90.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
....|+++|++|+|||||+|+|+|........ .++.|.......... .+..+.++||||+.++. ......+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence 34679999999999999999999976532211 112222222222233 67789999999998753 34445566666
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..++..+|++++|+|++++++..+..+++.+.+... ..|+++|+||+|+...
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~---~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT---TSCEEEEEECGGGCSS
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC---CCCEEEEEECcccCCc
Confidence 777889999999999987888887666666665421 2599999999998865
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=4.5e-19 Score=130.92 Aligned_cols=129 Identities=20% Similarity=0.301 Sum_probs=93.0
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
++..+...|+++|.+|+|||||+|+|+|...... ....+.|.......... . +..+.++||||+.++. ........
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence 4556667899999999999999999999765322 12223333333333344 5 7889999999998764 22445566
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhcccccceEEEEEEcCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAA-VHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
+...+..+...+|++++|+|++++.+..+... ++.+... ..|+++|+||+|+.
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 66666677778899999999987888887665 5555542 25999999999998
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=8.8e-19 Score=123.34 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=89.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~ 93 (170)
.....+|+++|.+|+|||||+|+|++...........+.|............+..+.++||||+.+...... .....+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 345689999999999999999999997632121223344444444444322467899999999876433322 111222
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..........+|++++|+|+.+.++..+..+++++.+. ..|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSCH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCCh
Confidence 22222234568999999999888888887777777662 2599999999999875
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=1.1e-17 Score=115.29 Aligned_cols=128 Identities=21% Similarity=0.243 Sum_probs=81.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|++|+|||||+|+|++...........+.|....... . +..+.++||||+.++..... ....+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~-~~~~~~~ 94 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKS-EREAWGR 94 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHH-HHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHH-HHHHHHH
Confidence 34568999999999999999999998752222122223333333222 2 34799999999876543322 1222222
Q ss_pred HHHh---ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 96 CIGL---AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 96 ~~~~---~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.... ....+|++++|+|+.++.+..+..+++++.+. ..|+++|+||+|+....
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGG
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCChH
Confidence 2222 23456999999999878888877777766552 24999999999998763
No 10
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=1.5e-17 Score=112.80 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=85.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..+..+|+++|++|+|||||++++++........ .+.+.......+.+ .+..+.++||||+..+....
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--------- 72 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTMR--------- 72 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCSC---------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEEEe-CCceEEEEECCCCHHHHHHH---------
Confidence 4567899999999999999999999865432211 11222222333444 66788999999997653221
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHh
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYL 161 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~ 161 (170)
......+|++++|+|+++.........+..+.. .. .|+++|+||+|+.....+.+.+.+
T Consensus 73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (178)
T 2lkc_A 73 --ARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---AN--VPIIVAINKMDKPEANPDRVMQEL 131 (178)
T ss_dssp --CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---GS--CCEEEEEETTTSSCSCHHHHHHHH
T ss_pred --HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---CC--CCEEEEEECccCCcCCHHHHHHHH
Confidence 135678899999999986666665555544432 12 599999999999875433444444
No 11
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.77 E-value=1.1e-17 Score=111.76 Aligned_cols=122 Identities=25% Similarity=0.249 Sum_probs=83.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||++++++...... ....+.+.........+ .+..+.++||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 5799999999999999999998653211 11223333334444444 567899999999986432 12233444445
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+.+.++..+..+.+++.+. ..|+++|.||+|+.+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-----GKPVILVATKVDDPKH 123 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-----TCCEEEEEECCCSGGG
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence 67788999999999877777776666666552 2599999999998765
No 12
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.77 E-value=5.2e-18 Score=115.14 Aligned_cols=127 Identities=23% Similarity=0.223 Sum_probs=80.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
++.+|+++|++|+|||||+|+|++....... ..++.+.......+.+ .+..+.++||||+.++....+.. .+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~--~~~~~- 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDEVERI--GIERA- 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSHHHHH--HHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhHHHHH--HHHHH-
Confidence 5678999999999999999999986532111 1222333233334444 56678999999997642111111 11111
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
......+|++++|+|+++..+..+..+++.+.+..... .|+++|.||+|+..
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITG 129 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHC
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCc
Confidence 12346789999999997665555555666665543222 58999999999753
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=6.9e-17 Score=111.01 Aligned_cols=128 Identities=19% Similarity=0.191 Sum_probs=85.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKE 92 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~ 92 (170)
+.....+|+++|++|+|||||+|++++...... ....+.+....... .+..+.++||||+........ .....
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHH
Confidence 345567999999999999999999998763222 22223333322222 245788999999865332221 11222
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..........++++++|+|+....+..+...++++... ..|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence 222222334667999999999877777777777777664 2599999999999865
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=1.2e-17 Score=128.82 Aligned_cols=123 Identities=23% Similarity=0.288 Sum_probs=85.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
++|+++|.+|+|||||+|.|++...... ...++.|.........+ .+..+.+|||||+.... .+.....+..++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 4799999999999999999998764322 22345665556666667 78889999999997531 11122345556666
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+...+|++++|+|+..+++..+..+.+++.+. ..|+++|+||+|..+
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR 124 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence 77889999999999888888887777776653 259999999999753
No 15
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=6.7e-17 Score=114.33 Aligned_cols=131 Identities=16% Similarity=0.088 Sum_probs=78.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|.+|+|||||+|+|++...... .....|.........+ .+..+.+|||||+.+........ .+.. .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~-~~~~-~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNT-IEMT-T 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCH-HHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhh-HHHH-H
Confidence 5568999999999999999999998765322 1222344444444444 56789999999997543211111 1111 1
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+......+|++++|+|+++..+........++..+.......|+++|+||+|+...
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 12234677999999999755442222223333333221113599999999998765
No 16
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=6.3e-17 Score=117.60 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=78.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCC----CCceeEEEeeEEEEee-CC--ceEEEEeCCCCCCCCCCchHH-
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTITCEMKTTVLK-DG--QVVNVIDTPGLFDSSAGSEFV- 89 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~~~~~~- 89 (170)
...+|+++|.+|+|||||+|+|++......... ....|........... .+ ..+.++||||+.++......+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 357899999999999999999998765443210 0012222222222221 22 378999999997654433221
Q ss_pred --H----HHHHHHHHh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 90 --G----KEIVKCIGL---------AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 90 --~----~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
. .++..+... ...++|+++++++.. +++...+..+++.+.. ..|+++|+||+|.+..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH
Confidence 1 111222221 123578888888664 4778888777777665 2599999999999865
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.73 E-value=5.7e-17 Score=111.30 Aligned_cols=128 Identities=16% Similarity=0.063 Sum_probs=79.5
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchH
Q 046239 10 WKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEF 88 (170)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~ 88 (170)
+..........+|+++|++|+|||||+|++++...........+.+. ........ ....+.++||||...+...
T Consensus 13 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--- 87 (189)
T 2gf9_A 13 GLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTVYRHDKRIKLQIWDTAGQERYRTI--- 87 (189)
T ss_dssp -CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE--EEEEEEETTEEEEEEEEECCSCCSSCCS---
T ss_pred CCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE--EEEEEEECCeEEEEEEEeCCCcHHHhhh---
Confidence 33444445567999999999999999999998664322222222222 22222221 2347889999998764322
Q ss_pred HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 88 --------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 88 --------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE 142 (189)
T ss_dssp --------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred --------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence 2245678899999999974322222 2344444443212 2599999999998754
No 18
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=1.1e-16 Score=109.45 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|++|+|||||+|++++.. ...... |.........+ .+..+.++||||..+ +...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~----t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISP----TLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCC----CSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccc----cCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 567899999999999999999999876 222121 22223334444 678899999999853 3334
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
......++|++++|+|++++.+..+ ..+++.+.... ....|+++|.||+|+...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 4456788999999999975533332 22233333321 123599999999998765
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=2.6e-17 Score=110.80 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||+|++++...........+.+ ........ .+ ..+.++||||..++ .
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGAS--FLTKKLNI-GGKRVNLAIWDTAGQERF-----------H 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCE--EEEEEEES-SSCEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceE--EEEEEEEE-CCEEEEEEEEECCCcHhh-----------h
Confidence 345789999999999999999999765432222222222 22222333 22 36788999997642 2
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+|+.+..+... ..+++.+.+..... .|+++|.||+|+.+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE 126 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc
Confidence 233446778999999999974332222 23444444443223 599999999998764
No 20
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.73 E-value=6.2e-17 Score=111.74 Aligned_cols=122 Identities=14% Similarity=0.076 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHH
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGK 91 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 91 (170)
..+.....+|+++|.+|+|||||++.+++..... ....+.+ .....+.. ....+.+|||||...+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~--------- 76 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEK-GRVAFTVFDMGGAKKF--------- 76 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEE-TTEEEEEEEECCSGGG---------
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEe-CCEEEEEEECCCCHhH---------
Confidence 4556677899999999999999999999876543 2122222 23333444 6788999999999753
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc---------ccceEEEEEEcCCCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK---------IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~ivv~tk~D~~~~ 152 (170)
......+..++|++++|+|+++..+... ..+++...+... ...|+++|.||+|+...
T Consensus 77 --~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 77 --RGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp --GGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred --HHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 2233356788999999999985533332 223333333220 13599999999998866
No 21
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.72 E-value=1.9e-16 Score=106.57 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=78.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|++|+|||||+|++++...... ..|.........+ ....+.++||||...+ ...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~ 67 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPY 67 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHH
Confidence 4568999999999999999999987654221 1122233344555 5788999999998642 222
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
+..+...+|++++|+|+++..+... ...++...+.. ....|+++|+||+|+...
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 3346678999999999975543332 22333333322 123599999999998765
No 22
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=1.6e-17 Score=111.63 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=74.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..+|+++|++|+|||||++++++...........+.+. ......+. ....+.++||||...+ ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~~ 69 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF--LTQRVTINEHTVKFEIWDTAGQERF-----------ASLA 69 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGG-----------GGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEECCCChhh-----------hhhh
Confidence 46899999999999999999997664322222222222 22223331 1237889999997642 1122
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|+++..+..+ ..++..+...... ..|+++|.||+|+...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGS
T ss_pred hhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 334567899999999974422222 2334444443322 2589999999998754
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.6e-17 Score=111.81 Aligned_cols=120 Identities=19% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+..+|+++|++|+|||||+|++++...........+.+... ....+. ....+.++||||+..+ ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERF-----------RAL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhh-----------hcc
Confidence 45789999999999999999999876433222222322222 222221 1356889999998642 112
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|+++..+... ..+++.+...... ..|+++|.||+|+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLTDV 126 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TSEEEEEEECTTCGGG
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECCccccc
Confidence 2234567899999999974433222 3344445443222 2489999999998754
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.1e-17 Score=128.90 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||+|.|+|...... ...++.|.........+ .+..+.++||||+.... .....++..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 6899999999999999999998654322 22345555555555555 57789999999997421 1144456666666
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+...+|++++|+|+.++.+..+..+.+.+.. ...|+++|+||+|....
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC---
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc
Confidence 6778899999999988888887666665543 12599999999998754
No 25
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=3.3e-17 Score=111.45 Aligned_cols=121 Identities=21% Similarity=0.187 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....+|+++|++|+|||||+|++++...........+.+.. .....+. ....+.++||||...+. .
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 76 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLAVNDATVKFEIWDTAGQERYH-----------S 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEEETTEEEEEEEEECCCSGGGG-----------G
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEEECCEEEEEEEEeCCCChhhh-----------h
Confidence 44578999999999999999999986543322222222222 2222221 13478999999976421 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDA 132 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCccccc
Confidence 12234567899999999974433222 3344444443222 2589999999998754
No 26
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.72 E-value=4.3e-17 Score=111.92 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCC
Q 046239 8 GDWKPTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 8 ~~~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~ 85 (170)
+.........+..+|+++|.+|+|||||+|++++...........+.+ .....+.+ .+ ..+.++||||...
T Consensus 9 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~l~Dt~G~~~---- 81 (189)
T 1z06_A 9 GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD--FRERAVDI-DGERIKIQLWDTAGQER---- 81 (189)
T ss_dssp ----------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC--EEEEEEEE-TTEEEEEEEEECCCSHH----
T ss_pred ccccCCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE--EEEEEEEE-CCEEEEEEEEECCCchh----
Confidence 334444555667899999999999999999999765432222222222 22223333 33 4789999999753
Q ss_pred chHHHHHHH-HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 86 SEFVGKEIV-KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 86 ~~~~~~~~~-~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+. .....+...+|++++|+|+++..+... ..++..+.+... ....|+++|+||+|+...
T Consensus 82 -------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 82 -------FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp -------HHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGG
T ss_pred -------hhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 22 233345678899999999974322222 234444444431 122589999999998654
No 27
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=1.6e-16 Score=109.12 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...+..+|+++|.+|+|||||+|.+++......... |.......+.. ....+.++||||... +.
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~ 81 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIP----TVGFNMRKITK-GNVTIKLWDIGGQPR-----------FR 81 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC----CCSEEEEEEEE-TTEEEEEEEECCSHH-----------HH
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCC----CCceeEEEEEe-CCEEEEEEECCCCHh-----------HH
Confidence 344567999999999999999999997654322121 22222333444 678899999999753 22
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
.....+..++|++++|+|+++.-+... ...++.+.+.. ....|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 333345578899999999974433222 22333333321 123599999999998765
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.8e-17 Score=113.22 Aligned_cols=122 Identities=19% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|++|+|||||+|++++...........+.+.......... ....+.++||||...+. .
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~ 87 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFH-----------S 87 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGG-----------G
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhH-----------h
Confidence 34567999999999999999999998664322222333332222222111 23578999999976431 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
........+|++++|+|+++..+... ..++..+.+.... ..|+++|+||+|+..
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSD 142 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 12234567899999999975433222 2334444443222 259999999999875
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=9.9e-18 Score=129.84 Aligned_cols=125 Identities=21% Similarity=0.200 Sum_probs=81.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..++|+|+|++|+|||||+|+|+|...... ...++.|.........+ .+..+.++||||+... .+....++..++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence 357899999999999999999998654322 22345555555555555 5778999999998732 122345566666
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|..++++..+..+++++.+. ..|+++|+||+|..+.
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRT-----KKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-----CSCEEEEEECC-----
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-----CCCEEEEEECccchhh
Confidence 6667788999999999888999888777777652 2599999999998654
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.72 E-value=2.1e-16 Score=107.26 Aligned_cols=120 Identities=18% Similarity=0.128 Sum_probs=76.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|++|+|||||+|+|++....... ....+.......+.+ .+ ..+.++||||...+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-------- 74 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI-------- 74 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CC--TTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC--------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCcc--CCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh--------
Confidence 345579999999999999999999987654222 222333333344444 44 56889999997654322
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|++++.+... ..++..+.... ...|+++|+||+|+...
T Consensus 75 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 75 ---TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPER 128 (181)
T ss_dssp ---CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGG
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchh
Confidence 2235678899999999975322222 22333333322 23599999999997654
No 31
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.71 E-value=2.6e-17 Score=126.83 Aligned_cols=128 Identities=19% Similarity=0.211 Sum_probs=82.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHH-HHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGK-EIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~~~~ 96 (170)
...+|+++|.+|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.+.....+.... .....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4579999999999999999999987643221 1233444444444555 6778999999999654331111111 11111
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
......+|++++|+|+.++.+.++..++..+.+. ..|+++|+||+|+.+..
T Consensus 252 -~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 252 -LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp -HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSCCC
T ss_pred -HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-----CCcEEEEEECccCCCcc
Confidence 1133456999999999988888887766655542 25999999999998764
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.71 E-value=1.3e-16 Score=110.66 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=76.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|++|+|||||++.|++...........+.+. ........ ....+.+|||||+.. +...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~ 73 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTIYRNDKRIKLQIWDTAGLER-----------YRTI 73 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGG-----------GHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE--EEEEEEECCeEEEEEEEECCCchh-----------hcch
Confidence 347899999999999999999998764332222222222 22222221 134789999999864 2233
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+.+..+... ..++..+...... ..|+++|+||+|+...
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCS--SCEEEEEEECTTCTTS
T ss_pred HHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCcc
Confidence 4456778899999999974322222 2333444333212 2599999999998764
No 33
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.71 E-value=7e-17 Score=110.34 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=77.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||+|.+++.......... .+.......... .+ ..+.++||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHT--IGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC--SEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 44579999999999999999999976543222212 222222333333 33 4788999999764 23
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.........+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence 344567788999999999974322222 2334444443322 2599999999998643
No 34
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=5.1e-17 Score=109.17 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=74.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+..+|+++|++|+|||||+|++++...........+.+... ...... ....+.++||||...+ ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~-----------~~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERY-----------HSL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHh-----------hhh
Confidence 35789999999999999999999765432222222222222 222221 2357889999998642 112
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|++++.+... ..++..+...... ..|+++|.||+|+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGGG
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence 2334577899999999974422222 2333444433222 2489999999998653
No 35
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=112.02 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||+|+|++........ ...+.......+.+ .+ ..+.++||||...+..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh----------
Confidence 445799999999999999999999765433222 22233333344444 33 4688999999765321
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
....+...+|++++|+|+.+..+... ..++..+....... .|+++|+||+|+....
T Consensus 81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKK 137 (196)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence 12234567899999999974322221 33444454443322 4999999999987653
No 36
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.71 E-value=2.2e-16 Score=110.38 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|.+|+|||||++++++........ +.+ .....+.+.. ...+.+|||||+.. +
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~ 67 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT---SIT--DSSAIYKVNNNRGNSLTLIDLPGHES-----------L 67 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC---CCS--CEEEEEECSSTTCCEEEEEECCCCHH-----------H
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC---Ccc--eeeEEEEecCCCccEEEEEECCCChh-----------H
Confidence 3456899999999999999999999765322211 111 2222344422 46799999999963 2
Q ss_pred HH-HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc----cccceEEEEEEcCCCCCC
Q 046239 94 VK-CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK----KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~-~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ivv~tk~D~~~~ 152 (170)
.. ....+...+|++++|+|+.+ +........+++.+.+.. ....|+++|.||+|+...
T Consensus 68 ~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 68 RFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 22 33345678899999999973 222233334444433211 223599999999998865
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.3e-17 Score=112.93 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
......+|+++|.+|+|||||+|+|++...........+ .......+.+ .+ ..+.++||||...+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~---------- 88 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG--VDFKIKTVEL-RGKKIRLQIWDTAGQERF---------- 88 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTT--EEEEEEEEEE-TTEEEEEEEEEECCSGGG----------
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--eeEEEEEEEE-CCeEEEEEEEeCCCcHHH----------
Confidence 345567899999999999999999998764322222222 2223333333 33 46889999997642
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..........+|++++|+|+++..+..+ ..+++.+....... .|+++|+||+|+...
T Consensus 89 -~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 89 -NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD 146 (192)
T ss_dssp -HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred -HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc
Confidence 1222233456799999999975433332 23344444433222 599999999998754
No 38
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=110.79 Aligned_cols=123 Identities=19% Similarity=0.102 Sum_probs=75.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|++|+|||||+|.|++.........+.+.+.......... ....+.++||||+..+..
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------- 89 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGT-AAVKAQIWDTAGLERYRA----------- 89 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETT-EEEEEEEEEESCCCTTCT-----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCCchhhhh-----------
Confidence 34457899999999999999999998664332222222222222121111 235688999999976421
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|+.+..+... ..++..+..... ...|+++|+||+|+...
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGG
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccc
Confidence 12234567899999999974322221 233333333221 23589999999998754
No 39
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.71 E-value=3.9e-17 Score=110.74 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....+|+++|.+|+|||||+|.+++...........+.+... ...... ....+.++||||...+. .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 79 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT--RIIEVSGQKIKLQIWDTAGQERFR-----------A 79 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE--EEEEETTEEEEEEEEECTTGGGTC-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCeEEEEEEEECCCChHhh-----------h
Confidence 345799999999999999999999766432222222222222 222221 12468899999976431 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|+++..+..+ ..++..+...... ..|+++|+||+|+...
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence 22234456799999999974432222 2344444443322 2589999999998654
No 40
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=3.2e-16 Score=112.85 Aligned_cols=122 Identities=18% Similarity=0.233 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~~~ 97 (170)
++|+++|.+|+|||||+|+|+|....... .++.|.......+.+ .+..+.++||||+.++..... .....+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~--~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN--WPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE--CTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC--CCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 57999999999999999999998643322 234555555555555 677999999999987653210 1111111111
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....++|++++|+|+++ . .....+..++.+. ..|+++|+||+|....
T Consensus 79 -~~~~~~d~vi~VvDas~-~-~~~~~l~~~l~~~-----~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 79 -VIDLEYDCIINVIDACH-L-ERHLYLTSQLFEL-----GKPVVVALNMMDIAEH 125 (256)
T ss_dssp -HHHSCCSEEEEEEEGGG-H-HHHHHHHHHHTTS-----CSCEEEEEECHHHHHH
T ss_pred -HhhCCCCEEEEEeeCCC-c-hhHHHHHHHHHHc-----CCCEEEEEEChhcCCc
Confidence 11268999999999973 1 1222333333332 2599999999997644
No 41
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=2.8e-16 Score=109.26 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||++.|++...........+. ......+.+ .+ ..+.++||||...+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~--------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV--DFKIKTVEL-DGKTVKLQIWDTAGQERFRTI--------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCC--CEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc--eeEEEEEEE-CCEEEEEEEEeCCChHHHHHH---------
Confidence 34579999999999999999999986643222222222 222223333 33 37899999998764322
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 74 --~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 74 --TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDK 128 (206)
T ss_dssp --CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred --HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence 2245678899999999974433222 2334444443322 2589999999998764
No 42
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.70 E-value=8.9e-17 Score=118.28 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=82.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC-CCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~~~~~~~ 96 (170)
+..+++++|++|+|||||+|+|+|........ ..+.|.........+ ....+.++||||+. .+ .......+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~-~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSR-KAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCC-CSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCC-CCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence 44689999999999999999999986532211 122222222222333 66789999999997 21 11122233333
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+......+|++++|+|+.+ ++..+..+++.+.. ...|+++++||+|...
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 3456788999999999986 88887766655542 1259999999999886
No 43
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.70 E-value=2.8e-16 Score=105.17 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||++++++...... . .|.........+ .+..+.++||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-I----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-C----CCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-c----CcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 3789999999999999999987553221 1 122223334444 678899999999964 2233344
Q ss_pred ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
...++|++++|+|++++-+... ...++.+.... ....|+++|.||+|+...
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 6688999999999975433222 22344443321 123599999999998765
No 44
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.70 E-value=1.2e-16 Score=109.84 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=74.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|++|+|||||++.+++...........+.+ .....+.. .+ ..+.++||||...+...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-------- 86 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE--FGARMVNI-DGKQIKLQIWDTAGQESFRSI-------- 86 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSS--EEEEEEEE-TTEEEEEEEECCTTGGGTSCC--------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEEE-CCEEEEEEEEECCCchhhhhh--------
Confidence 3445689999999999999999999765432211111211 22223333 33 47889999998754321
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|+++..+..+ ..++..+...... ..|+++|+||+|+...
T Consensus 87 ---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 87 ---TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLESR 141 (191)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred ---HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCCc
Confidence 1234567899999999974322222 2344444443222 2589999999998653
No 45
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.70 E-value=2.2e-16 Score=114.78 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~~ 96 (170)
..+|+++|.+|+|||||+|+|+|...... . .++.|.......+.+ .+..+.++||||+.++..... .....+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~-~-~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG-N-WAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE-E-CTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC-C-CCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 57899999999999999999999874222 2 234555555555555 577899999999998653211 111122111
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
. .....+|++++|+|+.+ . .....+..++.+. . .|+++|+||+|+...
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEK 127 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhh
Confidence 1 12468899999999873 1 2233444444443 2 599999999997643
No 46
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=1.1e-16 Score=124.01 Aligned_cols=127 Identities=18% Similarity=0.222 Sum_probs=85.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCC----chHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAG----SEFVGK 91 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~~~~~~ 91 (170)
.....+|+++|.+|+|||||+|++++....... ...+.|.......+.+ .+..+.+|||||+.+.... +.....
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHH
Confidence 345689999999999999999999987543222 2223444433344555 6778999999998643211 111111
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.... +...+|++++|+|+.++++..+..++..+.+. . .|+++|+||+|+.+..
T Consensus 270 ~~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~---~--~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 270 RALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKD 322 (456)
T ss_dssp HHHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCC
T ss_pred HHHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCCc
Confidence 1122 33456999999999988888888887777662 2 5999999999998654
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=3.3e-16 Score=108.59 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.+..+..+|+++|.+|+|||||+|+|++...........+... ........ ....+.++||||...+...
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-------- 88 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGK-DEFHLHLVDTAGQDEYSIL-------- 88 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCC--------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECC-EEEEEEEEECCCccchHHH--------
Confidence 3455678999999999999999999998765322222211111 11122211 3456899999998765332
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+...
T Consensus 89 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 89 ---PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp ---CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred ---HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccc
Confidence 2245678899999999974322221 222232322211 123589999999998754
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.6e-16 Score=106.15 Aligned_cols=121 Identities=18% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||+|++++........ .+..+.......... .+ ..+.++||||...+ .
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------R 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------H
Confidence 455799999999999999999999766432211 111122222222223 33 36889999997642 2
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.........+|++++|+|+.+..+..+ ..++..+...... ..|+++|+||+|+...
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHE 131 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSC
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcc
Confidence 333456678899999999974432222 3344444443322 2599999999998864
No 49
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=2.1e-16 Score=109.24 Aligned_cols=129 Identities=14% Similarity=0.085 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCCCchHHH
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVG 90 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~~~~~ 90 (170)
........+|+++|.+|+|||||++.+++........ +...........+ .....+.+|||||...+......
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-- 88 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL---FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-- 88 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGG---GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC--
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCccee---eeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh--
Confidence 3455667899999999999999999999864432211 1111111111111 14468999999998764322100
Q ss_pred HHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 91 KEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 91 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
. ..++.++|++++|+|+++++......+..++.+........|+++|.||+|++..
T Consensus 89 --~----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 89 --Y----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp --H----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred --c----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 0 1233467999999999866334445555666654222223599999999998764
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.70 E-value=1.3e-16 Score=108.09 Aligned_cols=121 Identities=20% Similarity=0.099 Sum_probs=76.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||+|++++...........+ .......+.+ .+ ..+.++||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG--VEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCS--EEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcee--eeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hh
Confidence 3457899999999999999999997654222122222 2222233333 33 3789999999764 23
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (170)
.....+...+|++++|+++++..+... ..+++.+...... ....|+++|+||+|+..
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 344567788999999999974432222 3344444443321 12249999999999873
No 51
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.69 E-value=7.8e-16 Score=105.91 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=79.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|++|+|||||++.+++...... . .|.......+.+ .+..+.++||||...+.. .
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-Q----PTWHPTSEELAI-GNIKFTTFDLGGHIQARR-----------L 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-C----CCCSCEEEEEEE-TTEEEEEEECCCSGGGTT-----------S
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-c----cCCCCCeEEEEE-CCEEEEEEECCCCHHHHH-----------H
Confidence 4567999999999999999999997654221 1 121122334445 568899999999975321 2
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHhh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYLG 162 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~~ 162 (170)
...+...+|++++|+|++++.+... ...++.+.+.. ....|+++|.||+|+.... .+.+.++++
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 150 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALG 150 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTT
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhC
Confidence 2345678899999999985543332 22233333221 1235999999999987642 134444443
No 52
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=7.5e-17 Score=108.57 Aligned_cols=122 Identities=18% Similarity=0.122 Sum_probs=73.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+..+|+++|++|+|||||+|++++...........+.+.. ....... ....+.++||||..++. ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~~ 68 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDK-SICTLQITDTTGSHQFP-----------AMQ 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETT-EEEEEEEEECCSCSSCH-----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECC-EEEEEEEEECCCchhhH-----------HHH
Confidence 3478999999999999999999986543222222222221 1111110 12368899999987631 112
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+++++..+... ..++..+.+........|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 223345699999999974322221 3444555554332223599999999998654
No 53
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=109.33 Aligned_cols=131 Identities=17% Similarity=0.097 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
....+..+|+++|.+|+|||||+|++++........ ..|.......+.+ .+..+.++||||...+.
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~---------- 81 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR---------- 81 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTG----------
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHH----------
Confidence 345567899999999999999999999876322211 1222233444555 57899999999987642
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc----ccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK----IFDYMIVVFTGGDYLEDNE-KTLEDYL 161 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ivv~tk~D~~~~~~-~~~~~~~ 161 (170)
........++|++++|+|+++..+.. ....++....... ...|+++|+||+|+..... +.+.+++
T Consensus 82 -~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 151 (190)
T 2h57_A 82 -NLWEHYYKEGQAIIFVIDSSDRLRMV--VAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLL 151 (190)
T ss_dssp -GGGGGGGGGCSEEEEEEETTCHHHHH--HHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred -HHHHHHHhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHh
Confidence 12234567789999999997432222 1222333322211 2359999999999976521 3444444
No 54
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.69 E-value=1.5e-16 Score=108.49 Aligned_cols=129 Identities=13% Similarity=0.127 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
....+..+|+++|.+|+|||||+|++++...... ....+ .....+.+ .+..+.++||||...+.
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~---------- 79 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVI-NNTRFLMWDIGGQESLR---------- 79 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHTTSCEEE-ECCSS----SSCEEEEE-TTEEEEEEEESSSGGGT----------
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCcc-CCcCc----eeeEEEEE-CCEEEEEEECCCCHhHH----------
Confidence 3445568999999999999999999998764221 11112 12233444 67889999999996532
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHh
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYL 161 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~ 161 (170)
........++|++++|+|+++..+... ...++.+.... ....|+++|+||+|+.... ...+.+++
T Consensus 80 -~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 147 (181)
T 2h17_A 80 -SSWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 147 (181)
T ss_dssp -CGGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred -HHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHh
Confidence 122345678899999999985544333 22333333321 1235999999999987642 13444444
No 55
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=2.7e-16 Score=122.05 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=67.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ .+..+.+|||||+.++... +........
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~~---ve~~gi~~~ 306 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGEE---IEHEGIRRS 306 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchhH---HHHHHHHHH
Confidence 3567999999999999999999987532221 1233444444455555 7789999999999764211 111112233
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
......+|++++|+|+++..+.... ....++.. +. ..|+++|+||+|+....
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HP---AAKFLTVANKLDRAANA 359 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT---TSEEEEEEECTTSCTTT
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC---CCCEEEEEECcCCCCcc
Confidence 4467889999999999877665322 12222222 22 25999999999998764
No 56
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=7.3e-16 Score=106.68 Aligned_cols=123 Identities=19% Similarity=0.063 Sum_probs=72.4
Q ss_pred CCCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHH
Q 046239 12 PTSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 12 ~~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~ 89 (170)
.........+|+++|.+|+|||||++.+++.........+.+ ......... .+. .+.++||||...+...
T Consensus 13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---- 84 (201)
T 2q3h_A 13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF---DNFSAVVSV-DGRPVRLQLCDTAGQDEFDKL---- 84 (201)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHC--------CCSS---EEEEEEEEE-TTEEEEEEEEECCCSTTCSSS----
T ss_pred cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc---ceeEEEEEE-CCEEEEEEEEECCCCHHHHHH----
Confidence 334556678999999999999999999998653222111111 111122223 333 5679999999865322
Q ss_pred HHHHHHHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+..++|++++|+|+++..+..+. .++..+..... ..|+++|.||+|+...
T Consensus 85 -------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 85 -------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED 139 (201)
T ss_dssp -------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred -------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence 22356788999999999744333332 34444544332 3599999999998754
No 57
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.69 E-value=1.8e-16 Score=106.43 Aligned_cols=119 Identities=21% Similarity=0.104 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
...+|+++|++|+|||||+|++++.........+.+.. .......+.. ...+.++||||..++...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD--FLERQIQVNDEDVRLMLWDTAGQEEFDAI----------- 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS--EEEEEEEETTEEEEEEEECCTTGGGTTCC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEE--EEEEEEEECCEEEEEEEEcCCCcHhHHHH-----------
Confidence 45789999999999999999999765422212111111 1222222211 247889999997654221
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+++++..+... ..++..+.... ...|+++|+||+|+...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence 1234567899999999974322221 23344444433 22599999999998753
No 58
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.69 E-value=4.8e-17 Score=112.66 Aligned_cols=120 Identities=20% Similarity=0.149 Sum_probs=69.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
......+|+++|++|+|||||+|++++...........+.+. ......+ .+ ..+.++||||...+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~l~i~Dt~G~~~~---------- 90 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIV-DGERTVLQLWDTAGQERF---------- 90 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEE-TTEEEEEEEEECTTCTTC----------
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEE-CCEEEEEEEEECCCCcch----------
Confidence 345568999999999999999999997653222111112111 1222222 22 45889999998753
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
..........+|++++|+|+.+..+..+ ..+++.+...... ..|+++|+||+|+.
T Consensus 91 -~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 91 -RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIR 146 (199)
T ss_dssp -HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred -hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccc
Confidence 1122233445799999999974433222 2334444443222 25999999999986
No 59
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=4.5e-16 Score=106.64 Aligned_cols=126 Identities=13% Similarity=0.137 Sum_probs=77.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|.+|+|||||++.+++...... ..+.+ .....+.+ .+..+.++||||...+.. .
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG----SNVEEIVI-NNTRFLMWDIGGQESLRS-----------S 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSC----SSCEEEEE-TTEEEEEEECCC----CG-----------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcC-cCCCc----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999997654321 11111 22333444 678899999999975321 1
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDNE-KTLEDYL 161 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~~-~~~~~~~ 161 (170)
......++|++++|+|+++..+... ...++.+.... ....|+++|.||+|+..... +.+.+.+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 142 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 142 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 1234567899999999985543333 22233333321 12359999999999876421 3444444
No 60
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.69 E-value=3.7e-16 Score=105.58 Aligned_cols=121 Identities=22% Similarity=0.170 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+|+++|++|+|||||+|.+++....... ...+.+... ....+ .+ ..+.++||||.... +...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~---------~~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKL---------DKSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCcc---------chhh
Confidence 4578999999999999999999987653321 222333222 22233 33 36789999998752 1112
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+++++..+... ..++..+.+... ....|+++|.||+|+...
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence 22345677899999999974322222 223333333211 113599999999998764
No 61
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.69 E-value=3e-16 Score=107.95 Aligned_cols=136 Identities=9% Similarity=0.035 Sum_probs=82.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC------CceeEEEeeEEE---Ee-eCCceEEEEeCCCCCCCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS------SGVTITCEMKTT---VL-KDGQVVNVIDTPGLFDSSAG 85 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~~~l~DtpG~~~~~~~ 85 (170)
.....+|+++|.+|+|||||++.+.+.......... ...|........ .. .....+.++||||...+.
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-- 88 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN-- 88 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS--
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH--
Confidence 345679999999999999999999876543321110 112222221111 01 012368899999987642
Q ss_pred chHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhc----ccccceEEEEEEcCCCCCCCh-hhHHHH
Q 046239 86 SEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFG----KKIFDYMIVVFTGGDYLEDNE-KTLEDY 160 (170)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ivv~tk~D~~~~~~-~~~~~~ 160 (170)
.....+..++|++++|+|++++....+...++.+.+++. .....|+++|.||+|+..... +.++++
T Consensus 89 ---------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~ 159 (198)
T 3t1o_A 89 ---------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAV 159 (198)
T ss_dssp ---------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHH
T ss_pred ---------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHH
Confidence 223345678899999999985544444444444444332 113359999999999876521 344444
Q ss_pred hh
Q 046239 161 LG 162 (170)
Q Consensus 161 ~~ 162 (170)
.+
T Consensus 160 ~~ 161 (198)
T 3t1o_A 160 VD 161 (198)
T ss_dssp HC
T ss_pred HH
Confidence 43
No 62
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=2e-15 Score=102.76 Aligned_cols=126 Identities=16% Similarity=0.113 Sum_probs=78.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|++|+|||||++++++...... ....+ .......+ .+..+.++||||...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~~----------- 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG----FNVETLSY-KNLKLNVWDLGGQTSIRPY----------- 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTT----CCEEEEEE-TTEEEEEEEEC----CCTT-----------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCcc-CCcCc----cceEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 5678999999999999999999997654222 11222 12233444 5688999999999764321
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCCh-hhHHHHh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDNE-KTLEDYL 161 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~~-~~~~~~~ 161 (170)
.......+|++++|+|+++..+... ...++...... ....|+++|+||+|+..... ..+.+++
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~ 144 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKEL 144 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 2245678899999999975543332 22334443321 12359999999999876521 3344444
No 63
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.69 E-value=1.2e-15 Score=104.15 Aligned_cols=117 Identities=18% Similarity=0.135 Sum_probs=77.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|++|+|||||++.+++...... ..|.......+.+ .+..+.++||||...+ ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRKI-----------RPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGGG-----------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHHH-----------HHH
Confidence 4568999999999999999999998643211 1111122233444 5778999999998642 233
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
+..+...+|++++|+|++++-+... ...++.+.+.. ....|+++|.||+|+...
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 3445678899999999975433332 22333333321 123599999999998765
No 64
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=2.1e-16 Score=109.88 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||++.+++.........+ .+.......+.+ .+ ..+.++||||... +.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 89 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGAT--IGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FR 89 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCc--cceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 34579999999999999999999876543221111 122222233333 33 3688999999753 23
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+|+++..+... ..++..+....... .|+++|.||+|+...
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAER 146 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 345567789999999999974322221 33444444433222 489999999998743
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.68 E-value=2.2e-16 Score=109.12 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC----------------------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG---------------------------- 68 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------------------- 68 (170)
....+|+++|++|+|||||+|+|++...........+. ......+.+ .+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA--SFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSC--EEEEEEEET-TC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccc--eeEEEEEEe-cCcccccccccccccccccccccccccccc
Confidence 45689999999999999999999987543221111111 111111222 11
Q ss_pred -----------ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccc
Q 046239 69 -----------QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKI 136 (170)
Q Consensus 69 -----------~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~ 136 (170)
..+.++||||...+.. ........+|++++|+|++++.+..+ ..++..+....
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---- 146 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---- 146 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----
Confidence 5789999999765421 12234567899999999974432222 22333333322
Q ss_pred cceEEEEEEcCC
Q 046239 137 FDYMIVVFTGGD 148 (170)
Q Consensus 137 ~~~~ivv~tk~D 148 (170)
..|+++|+||+|
T Consensus 147 ~~piilv~NK~D 158 (208)
T 3clv_A 147 NYIIILVANKID 158 (208)
T ss_dssp CCEEEEEEECTT
T ss_pred CCcEEEEEECCC
Confidence 159999999999
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=4e-16 Score=108.83 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK 91 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~ 91 (170)
.......+|+++|++|+|||||++++++.......... .+.......+.+ .+ ..+.+|||||...+...
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------ 85 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITT--IGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI------ 85 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCC--CSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCc--ccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH------
Confidence 34456689999999999999999999976542221222 222222333333 34 46899999998653221
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
...+...+|++++|+|+.+..+... ..++..+....... .|+++|+||+|+.
T Consensus 86 -----~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~ 138 (213)
T 3cph_A 86 -----TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME 138 (213)
T ss_dssp -----CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS
T ss_pred -----HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc
Confidence 1234567899999999974322222 34444444443222 5999999999984
No 67
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.68 E-value=7.4e-16 Score=105.65 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=76.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------CceEEEEeCCCCCCCCCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------GQVVNVIDTPGLFDSSAGS 86 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------~~~~~l~DtpG~~~~~~~~ 86 (170)
....+|+++|++|+|||||+|++++...........+.+.. ......... ...+.++||||+..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR-EKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER----- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG-----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee-eEEEEEecCCcccccccCcEEEEEEEeCCCcHH-----
Confidence 44579999999999999999999976543222222222111 022222211 24789999999864
Q ss_pred hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 87 EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|+.+..+..+ ..++..+..... ....|+++|+||+|+...
T Consensus 83 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 83 ------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp ------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGG
T ss_pred ------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 23334556788999999999974433222 334444444322 022599999999998753
No 68
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.68 E-value=7.3e-16 Score=104.88 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=73.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+|+++|.+|+|||||++.+++...........+.+. ...... .+ ..+.++||||...+.....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~-------- 72 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF---TKLITV-NGQEYHLQLVDTAGQDEYSIFPQ-------- 72 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEE-TTEEEEEEEEECCCCCTTCCCCG--------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEeCCCchhhhHHHH--------
Confidence 457999999999999999999996543222122212111 222223 33 4568999999987532222
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+...+|++++|+++.+..+... ..++..+.+.... ...|+++|.||+|+...
T Consensus 73 ---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 73 ---TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME 126 (181)
T ss_dssp ---GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred ---HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhc
Confidence 35678899999999974322222 2233333333221 13599999999998654
No 69
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.68 E-value=1.6e-16 Score=107.94 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=70.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||++.+++.......... .+.......+.+. ....+.++||||...+ .
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQERF-----------Q 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCChHh-----------h
Confidence 45679999999999999999999976542221111 1111222223221 1347899999997642 2
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
.........+|++++|+|+.+..+... ..++..+...... ....|+++|+||+|+...
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 334456788999999999974432222 2334444443320 123599999999998643
No 70
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.68 E-value=6.7e-17 Score=109.57 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
+..+|+++|++|+|||||+|++++......... ..+.........+ .+ ..+.++||||...+. .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA--TIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC--CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------H
Confidence 447999999999999999999997654322111 2222222333333 33 378899999976431 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|+++..+... ..++..+....... .|+++|+||+|+.+.
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDK 134 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGG
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence 11123456799999999974322221 23344444433222 589999999998754
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=1.1e-16 Score=112.17 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|.+|+|||||+|+|++...........+.+.... ......+ ..+.++||||...+.....
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------ 79 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAVLKD------ 79 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSCCCH------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhchHHH------
Confidence 34567999999999999999999997654322222222222211 1111112 4689999999875432221
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|+|++++.+..+ ..++..+....... .|+++|+||+|+...
T Consensus 80 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 80 -----VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR 132 (218)
T ss_dssp -----HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred -----HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 23467899999999985433332 34445555544333 499999999998754
No 72
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.67 E-value=8.6e-16 Score=105.87 Aligned_cols=118 Identities=13% Similarity=0.097 Sum_probs=73.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..+..+|+++|++|+|||||++.+++...... ..|.......+.+ .+..+.++||||...+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~----------- 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP----------- 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------
Confidence 34568999999999999999999987654321 1222223334444 678899999999975421
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|++++.+... ...++.+.... ....|+++|.||+|+...
T Consensus 89 ~~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 89 LWRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp THHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 12223457799999999975433222 22334443321 123599999999998765
No 73
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.67 E-value=9.8e-16 Score=106.23 Aligned_cols=121 Identities=20% Similarity=0.152 Sum_probs=74.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
..+..+|+++|++|+|||||+|.+++...........+. .....+.+ .+ ..+.+|||||...+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~-~~~~~~~~l~Dt~G~~~~~---------- 76 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVL-DGEEVQIDILDTAGQEDYA---------- 76 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCE---EEEEEEEE-TTEEEEEEEEECCCTTCCH----------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce---EEEEEEEE-CCEEEEEEEEcCCChhhhH----------
Confidence 345679999999999999999999976532221111111 11222333 33 368899999987631
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+++++..+... ..++..+...... ...|+++|+||+|+...
T Consensus 77 -~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 77 -AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGG
T ss_pred -HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccc
Confidence 112223445799999999974322222 2334444443321 13599999999998764
No 74
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.67 E-value=4.8e-16 Score=104.22 Aligned_cols=119 Identities=21% Similarity=0.065 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|++|+|||||+|++++...... ....+.+. ........ ....+.++||||...+ .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~ 67 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDG-EEASLMVYDIWEQDGG-----------RWLPG 67 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETT-EEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECC-EEEEEEEEECCCCccc-----------hhhhh
Confidence 46899999999999999999998664322 11222222 11111111 2346789999998753 22223
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+...+|++++|++++++.+... ..++..+.+... ....|+++|.||+|+...
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 68 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSS
T ss_pred hhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccc
Confidence 35577899999999974322222 223333333211 123599999999998755
No 75
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.67 E-value=9.8e-16 Score=105.05 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=78.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|++|+|||||+|++++...... ..+.+ .......+ ....+.++||||+..+...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~t~~----~~~~~~~~-~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG----VNLETLQY-KNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEE-CSSTT----CCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCc-CCCCc----eEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 4678999999999999999999987654322 11111 22233444 5778999999999764322
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|++++-+... ...++.+.+.. ....|+++|+||+|+...
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 1235678899999999985543332 22333333322 123599999999998765
No 76
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=109.55 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|.+|+|||||++.+++.........+ .+.......+.+ .+ ..+.+|||||...+ .
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGST--IGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------R 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------H
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCC--cceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H
Confidence 44578999999999999999999876532211111 111122233333 33 47899999998642 2
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+|+++..+... ..+++.+...... ..|+++|.||+|+...
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCccccc
Confidence 233445678899999999974322221 2344444443222 2599999999998753
No 77
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.67 E-value=1.7e-16 Score=106.74 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=72.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|++|+|||||+|++++......... ..+.........+ .+ ..+.++||||...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT--TIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 46899999999999999999997654222111 1122222333333 22 36889999998654322
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.......+|++++|+|+.+..+... ..++..+...... ..|+++|+||+|+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDMET 122 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCCc
Confidence 1123467899999999974332222 3344444443322 259999999999843
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=2.6e-16 Score=108.59 Aligned_cols=124 Identities=19% Similarity=0.111 Sum_probs=75.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|.+|+|||||+|+|++...........+.+.. ....... ....+.++||||...+. .
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~ 71 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDK-SVCTLQITDTTGSHQFP-----------A 71 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETT-EEEEEEEEECCGGGSCH-----------H
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECC-EEEEEEEEeCCChHHhH-----------H
Confidence 345689999999999999999999976543222222222211 1111110 12368899999987531 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+++++..+... ..++..+.+........|+++|+||+|+...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 12223345699999999974322222 2345555554432223599999999998753
No 79
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.67 E-value=5.8e-16 Score=104.95 Aligned_cols=123 Identities=17% Similarity=0.128 Sum_probs=74.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
..+..+|+++|++|+|||||++.+++.........+.+.. .....+.+ .+ ..+.++||||...+...
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~------- 72 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD--FFLRRITL-PGNLNVTLQIWDIGGQTIGGKM------- 72 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSS--EEEEEEEE-TTTEEEEEEEEECTTCCTTCTT-------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEE--EEEEEEEe-CCCCEEEEEEEECCCCccccch-------
Confidence 3456899999999999999999999765322111111111 12223333 33 57899999998764321
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+++..+..+ ..++..+..........| +++|.||+|+...
T Consensus 73 ----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 73 ----LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp ----HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred ----hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 1234567899999999974433222 233444444321111134 8999999998753
No 80
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.67 E-value=7.3e-16 Score=106.18 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK 91 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~ 91 (170)
.......+|+++|.+|+|||||++.+++.........+.+.+.. ..... .+ ..+.++||||...+.
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~~~i~Dt~G~~~~~-------- 85 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS---HVMKY-KNEEFILHLWDTAGQEEYD-------- 85 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE---EEEEE-TTEEEEEEEEEECCSGGGT--------
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE---EEEEE-CCEEEEEEEEECCCcHHHH--------
Confidence 34455689999999999999999999986642221222111111 12222 33 346899999976532
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.....+...+|++++|+|+++..+..+ ..++..+..... ..|+++|.||+|+..
T Consensus 86 ---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 86 ---RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp ---TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred ---HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 223346778999999999985433323 234444444322 249999999999875
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.67 E-value=6.8e-17 Score=112.06 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=71.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|++|+|||||+|.+++.......... .+.......... .+ ..+.++||||...+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~----------- 87 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHT--IGVEFGSRVVNV-GGKTVKLQIWDTAGQERF----------- 87 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHH-----------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCc--ccceeEEEEEEE-CCeeeEEEEEcCCCcHhH-----------
Confidence 345579999999999999999999986543221111 111122223333 33 57899999997532
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+...+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPE 145 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGG
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 1112234567899999999974332222 2334444443322 2589999999998643
No 82
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.67 E-value=8.5e-16 Score=102.89 Aligned_cols=119 Identities=19% Similarity=0.141 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
+..+|+++|++|+|||||+|++++...........+.. ......+ .+ ..+.++||||..++ ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE---EEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceE---EEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 45789999999999999999999765422211111111 1122223 33 36889999998753 11
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+++++..+... ..++..+.+.... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc
Confidence 22233456799999999974322222 2334444444321 12599999999998754
No 83
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.67 E-value=4.6e-16 Score=104.09 Aligned_cols=118 Identities=20% Similarity=0.157 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|++|+|||||+|++++............ + ........ .+ ..+.++||||...+. ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~l~D~~G~~~~~-----------~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-D--FYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-E--EEEEEEEE-TTEEEEEEEEECCCTTCCH-----------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-e--eEEEEEEE-CCEEEEEEEEECCCchhhH-----------HH
Confidence 47899999999999999999997654322111111 1 11222333 33 348899999987531 11
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+++.+..+... ..++..+.+.... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc
Confidence 2223345699999999974322222 2333444443321 23599999999998654
No 84
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.67 E-value=1.9e-15 Score=101.66 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|++|+|||||+|.+++....... .++.+.......+.+ .+..+.++||||+..+..... ...+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~--~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSSH--HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcch--hHHHHHHHH
Confidence 468999999999999999999986532221 122233333333444 567899999999987543221 111111111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....++++++|+|+.+ .. ....++..+.+ . ..|+++|.||+|+..
T Consensus 78 -~~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~---~--~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 78 -INEKPDLVVNIVDATA-LE-RNLYLTLQLME---M--GANLLLALNKMDLAK 122 (165)
T ss_dssp -HHHCCSEEEEEEETTC-HH-HHHHHHHHHHH---T--TCCEEEEEECHHHHH
T ss_pred -hcCCCCEEEEEecCCc-hh-HhHHHHHHHHh---c--CCCEEEEEEchHhcc
Confidence 1136799999999873 21 12223333332 1 259999999999753
No 85
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.67 E-value=5.9e-16 Score=114.21 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=81.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|.+|+|||||+|.+++....... ...+.|.........+..+..+.+|||||...+ ..........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~ 75 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD 75 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence 468999999999999999999886432221 123344444444444434678999999998642 1111123334
Q ss_pred hccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....++|++++|+|+++..+..+. .+.+++.+........|+++|.||+|+..
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 456789999999999855444443 33444444332122259999999999887
No 86
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=3.2e-16 Score=109.87 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
.......+|+++|.+|+|||||++.+++.........+.+... ....... ....+.+|||||...+.
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~--------- 89 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY---TACLETEEQRVELSLWDTSGSPYYD--------- 89 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEEC--CEEEEEEEEECCSGGGT---------
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE---EEEEEECCEEEEEEEEECCCCHhHH---------
Confidence 4445668999999999999999999997654322122221111 1112221 23468899999987532
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....++..+|++++|+|+++..+... ..++..+..... ..|+++|.||+|+..+
T Consensus 90 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 90 --NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP---STRVLLIGCKTDLRTD 146 (214)
T ss_dssp --TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT---TSEEEEEEECGGGGGC
T ss_pred --HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence 223346788999999999985433333 344455555422 2599999999998753
No 87
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=1.2e-16 Score=123.59 Aligned_cols=123 Identities=23% Similarity=0.242 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+.+|+++|++|+|||||+|+|++........ ..+.|.........+ .+..+.++||||+.++....+ .......
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~~ve---~~gi~~~ 297 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSDQVE---KIGVERS 297 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHEEEE-TTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEEEEE-CCEEEEEEECCccccchhHHH---HHHHHHH
Confidence 45679999999999999999999865322211 223343333334445 678899999999976421111 1112223
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|+|++++.+..+..+++.+.. .|+++|+||+|+...
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK 345 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc
Confidence 346678999999999988888777666555433 499999999998765
No 88
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.66 E-value=1.8e-15 Score=109.68 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=78.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|++|+|||||+|+|+|...... . .++.|.........+ .+..+.++||||+.++...... +......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~-~-~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~---~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVG-N-WPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSID---ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEE-E-CTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCHH---HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccC-C-CCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCHH---HHHHHHh
Confidence 46899999999999999999999865322 2 233444455555555 6778999999999976543321 1111111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
....++|++++|+|++.. .....++..+.+. . ..|+++|+||+|+.
T Consensus 77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~---~-~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEM---E-VKNIILVLNKFDLL 122 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT---T-CCSEEEEEECHHHH
T ss_pred hhccCCcEEEEEecCCcc--hhhHHHHHHHHhc---C-CCCEEEEEEChhcC
Confidence 123688999999999732 1222233333322 1 15999999999964
No 89
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.66 E-value=5.6e-16 Score=107.61 Aligned_cols=122 Identities=15% Similarity=0.076 Sum_probs=75.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|++|+|||||+|+|++.......... .+.........+ .+ ..+.++||||...+...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-------- 73 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKAT--IGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSL-------- 73 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCC--CSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCS--------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc--ccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHh--------
Confidence 345679999999999999999999986643221211 222222333333 22 46899999998653221
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc--cccceEEEEEEcCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK--KIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~ 151 (170)
...+...+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 74 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 74 ---GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp ---CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred ---HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 1235678899999999974432222 2334444443321 12359999999999874
No 90
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=3.9e-16 Score=109.36 Aligned_cols=119 Identities=14% Similarity=0.043 Sum_probs=74.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEE--eeEEEEeeC-----------CceEEEEeCCCCCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC--EMKTTVLKD-----------GQVVNVIDTPGLFDSS 83 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~l~DtpG~~~~~ 83 (170)
....+|+++|.+|+|||||+|+|++...... ...|... ....+.+.. ...+.+|||||..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~--- 95 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--- 95 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH---
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH---
Confidence 3457899999999999999999998654211 1122211 112222211 3568999999964
Q ss_pred CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
++......+...+|++++|+|+++..+. .....++..+.... ...|+++|+||+|+...
T Consensus 96 --------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 96 --------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp --------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred --------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 2334445566788999999999743222 12223444433211 23599999999998753
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.66 E-value=8.6e-16 Score=106.41 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=76.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
.+..+|+++|++|+|||||++++++...... . .|.......+.+ .+..+.++||||...+.. .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~-~----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-V----PTLHPTSEELTI-AGMTFTTFDLGGHIQARR-----------V 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----CC-----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCcc-C----CCCCceeEEEEE-CCEEEEEEECCCcHhhHH-----------H
Confidence 4567899999999999999999998654221 1 111112234444 567899999999875432 2
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCCC-hhhHHHHhh
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLEDN-EKTLEDYLG 162 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~~-~~~~~~~~~ 162 (170)
...+...+|++++|+|+.++-+... ...++.+.+.. ....|+++|.||+|+.... .+.+.+++.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence 2335567899999999975433332 22333333321 1235999999999987532 244555544
No 92
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.66 E-value=2.7e-15 Score=108.10 Aligned_cols=121 Identities=23% Similarity=0.263 Sum_probs=78.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+..+|+++|.+|+|||||+|+|+|....... .++.|.......+.+ .+..+.++||||+.++..... ...+....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~--~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVAN--WPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence 3478999999999999999999997654221 234555555555555 577899999999987654321 11111111
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
. ....+|++++|+|+++ +. ....++..+.+ .. .|+++|+||+|+..
T Consensus 79 ~-~~~~~d~ii~V~D~t~-~~-~~~~~~~~l~~---~~--~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 79 L-LKGDADLVILVADSVN-PE-QSLYLLLEILE---ME--KKVILAMTAIDEAK 124 (258)
T ss_dssp H-HHSCCSEEEEEEETTS-CH-HHHHHHHHHHT---TT--CCEEEEEECHHHHH
T ss_pred H-hhcCCCEEEEEeCCCc-hh-hHHHHHHHHHh---cC--CCEEEEEECcCCCC
Confidence 1 1257899999999973 22 22223333332 22 59999999999754
No 93
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.8e-15 Score=102.51 Aligned_cols=117 Identities=19% Similarity=0.068 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+|+++|.+|+|||||++.+++...........+.. ......+ .+ ..+.+|||||...+..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~D~~G~~~~~~----------- 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH---YAVSVTV-GGKQYLLGLYDTAGQEDYDR----------- 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC---EEEEEES-SSCEEEEEEECCCCSSSSTT-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccce---eEEEEEE-CCEEEEEEEEECCCCcchhH-----------
Confidence 45799999999999999999999764322111111111 1122333 33 4678999999986532
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+|++++.+... ..++..+.+... ..|+++|.||+|+...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence 22345778999999999974422222 134455555322 2599999999998764
No 94
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.66 E-value=1.3e-15 Score=103.82 Aligned_cols=120 Identities=19% Similarity=0.147 Sum_probs=73.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
.+..+|+++|++|+|||||+|+|++............. .......+ .+ ..+.++||||...+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 80 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD---SYRKKVVL-DGEEVQIDILDTAGQEDYA----------- 80 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCE---EEEEEEEE-TTEEEEEEEEECCCTTCCH-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccce---EEEEEEEE-CCEEEEEEEEECCCCcccH-----------
Confidence 45589999999999999999999976542221111111 11122233 33 368899999987531
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+++.+..+... ..++..+...... ...|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGG
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 112223445799999999974322222 2334444444321 12599999999998754
No 95
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.66 E-value=4.3e-16 Score=106.20 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=55.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+|+++|++|+|||||++.+++....... .+..+.......+.+ .+ ..+.++||||...+ ..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------RT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEcCCCChhh-----------hh
Confidence 4578999999999999999999975432111 111222222233333 33 57889999998653 22
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+|++++.+... ..++..+...... ..|+++|.||+|+...
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDK 128 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSC
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCcc
Confidence 23346778999999999974322222 2333444433222 2599999999998754
No 96
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7e-16 Score=108.67 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|++|+|||||++.|++.......... .+.......+.+ .+ ..+.+|||||...+...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t--~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------- 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKST--IGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI--------- 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC---------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--ccceeEEEEEEE-CCEEEEEEEEECCCccchhhh---------
Confidence 44579999999999999999999986543221111 111122223333 33 47899999998764322
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+...+|++++|+|+++..+..+ ..++..+....... .|+++|+||+|+...
T Consensus 79 --~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 79 --TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHL 133 (223)
T ss_dssp --CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGG
T ss_pred --HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence 2245678899999999974433222 23344444432222 489999999998753
No 97
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=5.6e-16 Score=119.49 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH--HHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE--IVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~--~~~ 95 (170)
...+++++|++|+|||||+|+|+|...... ...++.|.......+.+ .+..+.++||||+............. ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 457999999999999999999999764322 12234444444445555 67789999999985432111000000 000
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
. ......+|++++++|+.++.+..+..+...+... ..++++|+||+|+.+..
T Consensus 257 ~-~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 257 V-VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHR 308 (439)
T ss_dssp H-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTG
T ss_pred H-HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCch
Confidence 0 1122346999999999877777776555544432 25999999999988653
No 98
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.66 E-value=5.1e-16 Score=118.78 Aligned_cols=127 Identities=21% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
+.....+|+++|.+|+|||||+|+|++...... ....+.|.........+.....+.+|||||+.++............
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 345568999999999999999999998764322 2233445555555565533348999999999986543332222222
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
....++|++++|+|+ .....+..++.++.+. ..|+++|+||+|+....
T Consensus 109 ----~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 109 ----RVFYRADCGILVTDS--APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp ----HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTCC
T ss_pred ----HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCcc
Confidence 345678999999998 5666777777777765 25999999999998774
No 99
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.7e-16 Score=109.12 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=73.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+..+|+++|++|+|||||+++|++...........+.+. ......+. ....+.++||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF--KVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE--EEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 457999999999999999999998654322222222222 22222221 2356889999998753211
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
...+...+|++++|+|+.+..+... ..++..+..... ....|+++|+||+|+..
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc
Confidence 2234567899999999974322222 222333333211 12358999999999854
No 100
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.65 E-value=3e-15 Score=104.79 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=63.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
.+..+|+++|.+|+|||||++++++........... .. ........ .+ ..+.+|||||...+ .
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~-~~--~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 96 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FE--RYMVNLQV-KGKPVHLHIWDTAGQDDY-----------D 96 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCC-CE--EEEEEEEE-TTEEEEEEEEEC------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc-ce--eEEEEEEE-CCEEEEEEEEECCCchhh-----------h
Confidence 345799999999999999999999865422211111 11 11122222 33 36889999998753 2
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+|+++..+.... .++..+.+... ..|+++|.||+|+...
T Consensus 97 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 97 RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKD 153 (214)
T ss_dssp --------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SCCEEEEEECGGGGSC
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhhcc
Confidence 2233456788999999999743222221 24444444321 2499999999998765
No 101
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.65 E-value=8.9e-16 Score=113.40 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=80.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccC--CC-Cc---eeEEE--------------------------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASA--GS-SG---VTITC-------------------------------- 58 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~--~~-~~---~t~~~-------------------------------- 58 (170)
...++|+++|.+|+|||||+|+|+|......+. .+ .+ .+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 455789999999999999999999976422211 11 11 01110
Q ss_pred ------e-------------eEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhccCCccEEEEEEeC-CCC
Q 046239 59 ------E-------------MKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGLAKGGIHAVLVVFSA-RNR 116 (170)
Q Consensus 59 ------~-------------~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~ 116 (170)
. ...+..+....+.++||||+..... ........+...+..+...+|++++|+++ +..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0 0001122346799999999975221 11122334555555566788999999987 444
Q ss_pred CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 117 FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 117 ~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
+...+ ..+++.+... ..|+++|+||+|+..... ...++++
T Consensus 182 ~~~~~~~~i~~~~~~~-----~~~~i~v~NK~Dl~~~~~-~~~~~~~ 222 (315)
T 1jwy_B 182 LANSDALQLAKEVDPE-----GKRTIGVITKLDLMDKGT-DAMEVLT 222 (315)
T ss_dssp STTCSHHHHHHHHCSS-----CSSEEEEEECTTSSCSSC-CCHHHHT
T ss_pred hhhhHHHHHHHHhCCC-----CCcEEEEEcCcccCCcch-HHHHHHh
Confidence 44333 2444444321 259999999999986642 2344444
No 102
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=9.7e-17 Score=110.38 Aligned_cols=121 Identities=15% Similarity=0.092 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....+|+++|.+|+|||||+|.+++...........+.+. ....... .....+.++||||... +..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~ 87 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF--KVKTVYRHEKRVKLQIWDTAGQER-----------YRT 87 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTE--EEEEEEETTTTEEEEEECHHHHHH-----------CHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEE--EEEEEEECCEEEEEEEEeCCChHH-----------HHH
Confidence 4457899999999999999999997543211111111111 1122222 1345789999999643 233
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+|+++..+... ..+++.+...... ..|+++|.||+|+...
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 88 ITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred HHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence 34456678899999999974322221 3344444443222 2599999999998654
No 103
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.65 E-value=3.9e-16 Score=104.59 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..+|+++|.+|+|||||+|++++...........+ .......... ....+.++||||...+.. . .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~-------~ 68 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE---DSYRKQVEVDCQQCMLEILDTAGTEQFTA----M-------R 68 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE---EEEEEEEESSSCEEEEEEEEECSSCSSTT----H-------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc---ceEEEEEEECCEEEEEEEEECCChHHHHH----H-------H
Confidence 46899999999999999999997654222111111 1111222221 124688999999876421 1 1
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+++++..+... ..+++.+.+.... ...|+++|+||+|+.+.
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence 122335699999999974322222 2344444443321 23599999999998754
No 104
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=1.9e-15 Score=105.18 Aligned_cols=117 Identities=19% Similarity=0.115 Sum_probs=73.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+|+++|.+|+|||||+|++++...........+.. ....... .+ ..+.++||||...+..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFEN---YVADIEV-DGKQVELALWDTAGQEDYDR----------- 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCE---EEEEEEE-TTEEEEEEEEECTTCTTCTT-----------
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccce---EEEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 35689999999999999999999865432211111111 1112233 33 4688999999876432
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|+++..+... ..++..+.+... ..|+++|+||+|+...
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRSD 144 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGGC
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhcc
Confidence 12245678899999999974322222 334455544321 2599999999998765
No 105
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.65 E-value=4.8e-16 Score=106.27 Aligned_cols=119 Identities=22% Similarity=0.198 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
+..+|+++|++|+|||||+|+|++.......... +.......... .+. .+.++||||...+....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~--------- 69 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPT---IEDSYRKQVVI-DGETCLLDILDTAGQEEYSAMR--------- 69 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCCC---CTTH---------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCC---chheEEEEEEE-CCcEEEEEEEECCCcHHHHHHH---------
Confidence 4578999999999999999999976542221111 11122222223 333 46789999987643211
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+++++..+... ..++..+..... ....|+++|+||+|+...
T Consensus 70 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 70 --DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC
T ss_pred --HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc
Confidence 122344699999999974322222 233444444322 123599999999998754
No 106
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.65 E-value=1.4e-15 Score=114.56 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccC--CCCcee-EEE------------------------------------
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA--GSSGVT-ITC------------------------------------ 58 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~--~~~~~t-~~~------------------------------------ 58 (170)
.-+.|+|+|.+|||||||+|+|+|......+. .+...+ ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 34599999999999999999999965322211 110000 000
Q ss_pred -------------eeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHH
Q 046239 59 -------------EMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEA 123 (170)
Q Consensus 59 -------------~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~ 123 (170)
....+..+....+.++||||+..+.. .......++...+..+..++|+++++++.... ......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~~ 191 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATSD 191 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGCH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCHH
Confidence 00111112345789999999987532 12334456666666777889999999876421 222223
Q ss_pred HHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 124 AVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.+..+....... .|+++|+||+|++...
T Consensus 192 ~~~l~~~~~~~~--~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 192 AIKISREVDPSG--DRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHSCTTC--TTEEEEEECGGGCCTT
T ss_pred HHHHHHHhcccC--CCEEEEEeCCccCCCc
Confidence 344344432222 4899999999998653
No 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.65 E-value=4.2e-15 Score=103.03 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|.+|+|||||++.+++...........+.... ....+ .+ ..+.++||||...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~-~~~~~~l~i~Dt~G~~~~~----------- 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI---ADIEV-DGKQVELALWDTAGQEDYD----------- 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE---EEEEE-TTEEEEEEEECCCCSGGGT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE---EEEEE-CCEEEEEEEEECCCchhHH-----------
Confidence 34568999999999999999999976543221111111111 12223 33 368899999986532
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.........+|++++|+|+++..+... ..++..+.+... ..|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQD 144 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTTC
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhcC
Confidence 122245678899999999974322222 234444444322 2599999999998865
No 108
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=1.7e-15 Score=105.38 Aligned_cols=120 Identities=19% Similarity=0.075 Sum_probs=74.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
...+..+|+++|.+|+|||||++.+++......... .+.......... .+. .+.++||||...+.
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~---t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------- 92 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP---TVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD--------- 92 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCC---CSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT---------
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCC---eecceeEEEEEE-CCEEEEEEEEECCCchhhH---------
Confidence 345678999999999999999999996543222111 111112222222 333 45599999996532
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...+|++++|+|++++.+..+. .++..+.... ...|+++|.||+|+...
T Consensus 93 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 93 --RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp --TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred --HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence 2233467789999999999854333332 3444444432 22599999999998765
No 109
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.65 E-value=1.1e-15 Score=104.22 Aligned_cols=122 Identities=21% Similarity=0.190 Sum_probs=72.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
...+..+|+++|++|+|||||+|++++...........+ ... ...... .+. .+.++||||...+....
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~--~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~------ 83 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE--DSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMR------ 83 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC--EEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSH------
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--cee-EEEEEe-CCcEEEEEEEECCCchhhHHHH------
Confidence 345567999999999999999999997643222111111 111 222223 343 35569999987542211
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|++++.+... ..++..+.+.... ...|+++|.||+|+...
T Consensus 84 -----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 84 -----EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL 138 (183)
T ss_dssp -----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT
T ss_pred -----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhc
Confidence 122345699999999974322221 2333444333221 22489999999998753
No 110
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.64 E-value=3.2e-15 Score=102.47 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
+..+|+++|.+|+|||||+|.|++.......... +.........+ .+ ..+.++||||...+ ..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT---IEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTT---CCEEEEEEEEE-TTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCc---cceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HH
Confidence 4579999999999999999999976532221111 11111122333 33 34889999998642 22
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....+...+|++++|+++.+..+..+ ..++..+...... ...|+++|+||+|+..
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 33346678899999999974432222 2334444443321 1259999999999875
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.8e-16 Score=106.87 Aligned_cols=123 Identities=9% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|++|+|||||+|.|++...... ......+... .+ ....+.+|||||+..+..... .
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-~~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~~-------~ 110 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKLS-------D 110 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCHH-------H
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-cccCCCceee-----ee-cCCeEEEEECCCCchHHHHHH-------H
Confidence 35668999999999999999999998653221 1111111111 11 456788999999986532211 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc-----cccceEEEEEEcCCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK-----KIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ivv~tk~D~~~~~ 153 (170)
++......+|++++|+|+... .........++.+.+.. ....|+++|+||+|+....
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVD-PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCC-HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhhcccCCEEEEEEECCCC-chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 122223457999999998711 11112223333333321 1135999999999998763
No 112
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.64 E-value=4.9e-16 Score=107.86 Aligned_cols=120 Identities=19% Similarity=0.111 Sum_probs=55.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC--ccccccCCCCceeE--EEeeEEEEeeC---CceEEEEeCCCCCCCCCCchHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTI--TCEMKTTVLKD---GQVVNVIDTPGLFDSSAGSEFV 89 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~--~~~~~~~~~~~~t~--~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~~~~ 89 (170)
....+|+++|++|+|||||++++++. ..... ...|. ......+.+.. ...+.++||||+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------- 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--------- 84 (208)
T ss_dssp EEEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTH---------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEEEEEEECCcccEEEEEEEECCCcH---------
Confidence 34579999999999999999999986 32111 11222 12233344412 3478999999985
Q ss_pred HHHHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCC
Q 046239 90 GKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 90 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~ 151 (170)
++......+..++|++++|+|++++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 85 --~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 85 --LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp --HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred --HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 234455667889999999999974432222 2344444443220 01359999999999876
No 113
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.64 E-value=7e-16 Score=103.70 Aligned_cols=119 Identities=21% Similarity=0.105 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
.+|+++|++|+|||||++++++.......... .+.........+ .+ ..+.++||||...+... ..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~~ 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME--NSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------LQ 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC--CcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------hh
Confidence 57999999999999999999976543222211 122222222333 33 46779999999763210 11
Q ss_pred HhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|++++-+... ..++..+...... ...|+++|.||+|+.+.
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS 124 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGG
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhc
Confidence 112334699999999974322221 2333333332211 13599999999998743
No 114
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.64 E-value=3.8e-15 Score=101.51 Aligned_cols=117 Identities=19% Similarity=0.063 Sum_probs=74.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
+..+|+++|++|+|||||++++++...........+... ...... .+ ..+.++||||...+. .
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY---SANVMV-DGKPVNLGLWDTAGQEDYD-----------R 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE---EEEEEE-TTEEEEEEEECCCCSGGGT-----------T
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee---EEEEEE-CCEEEEEEEEECCCCHhHH-----------H
Confidence 457899999999999999999996543222111111111 112222 33 356699999997532 2
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
........+|++++|+|++++.+..+. .++..+.+... ..|+++|+||+|+...
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 124 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence 223456788999999999744333322 34455554322 3599999999998765
No 115
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.64 E-value=4.4e-16 Score=109.47 Aligned_cols=123 Identities=16% Similarity=0.072 Sum_probs=75.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
......+|+++|.+|+|||||+|.++............+.+.......... ....+.++||||...+.....
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~------- 82 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLRD------- 82 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCCH-------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHHH-------
Confidence 445568999999999999999999554332212122333343333332221 235688999999865432211
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+..++|++++|+|+++..+... ..++..+..... ..|+++|+||+|+...
T Consensus 83 ----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 83 ----GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR 134 (221)
T ss_dssp ----HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC
T ss_pred ----HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc
Confidence 23457899999999985433222 234444444322 2499999999998754
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.64 E-value=8e-15 Score=100.25 Aligned_cols=121 Identities=20% Similarity=0.283 Sum_probs=75.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHH-H
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV-K 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 95 (170)
.+..+|+++|++|+|||||+|+|++........ ++.+.......+.+ .+..+.++||||+..+..... ...+. .
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~ 79 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARD 79 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHH
Confidence 355799999999999999999999865432211 23333344444555 678899999999987643211 01111 1
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+.. ...++++++|+|... + . ....++....... .|+++|.||+|...
T Consensus 80 ~~~--~~~~~~~i~v~d~~~-~--~--~~~~~~~~~~~~~--~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 80 YII--NEKPDLVVNIVDATA-L--E--RNLYLTLQLMEMG--ANLLLALNKMDLAK 126 (188)
T ss_dssp HHH--HHCCSEEEEEEEGGG-H--H--HHHHHHHHHHTTT--CCEEEEEECHHHHH
T ss_pred HHh--ccCCCEEEEEecchh-H--H--HHHHHHHHHHhcC--CCEEEEEEhhhccc
Confidence 111 124789999999862 1 1 1223333332222 58999999999753
No 117
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.64 E-value=1.3e-15 Score=103.37 Aligned_cols=121 Identities=20% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
.....+|+++|.+|+|||||+|++++...........+.. ......+ .+ ..+.++||||..++.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~------ 75 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDS---YTKICSV-DGIPARLDILDTAGQEEFGAMRE------ 75 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEE---EEEEEEE-TTEEEEEEEEECCCTTTTSCCHH------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCce---EEEEEEE-CCEEEEEEEEECCCchhhHHHHH------
Confidence 3456799999999999999999999864322211111111 1122333 33 4678999999876432211
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+...+|++++|+++++..+... ..++..+...... ...|+++|+||+|+...
T Consensus 76 -----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 76 -----QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVVLVGNKADLESQ 129 (181)
T ss_dssp -----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS-SCCCEEEEEECGGGGGG
T ss_pred -----HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 12334699999999974322221 2333333222211 12589999999998754
No 118
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.64 E-value=8.2e-16 Score=108.03 Aligned_cols=120 Identities=19% Similarity=0.150 Sum_probs=74.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
+..+|+|+|.+|+|||||++.++..........+.+.. ......... ....+.||||+|...+. .+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d--~~~k~~~~~~~~v~l~iwDtaGqe~~~-----------~l 78 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGID--FLSKTMYLEDRTIRLQLWDTAGLERFR-----------SL 78 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEECSSCEEEEEEECCSCTTTCG-----------GG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceE--EEEEEEEecceEEEEEEEECCCchhhh-----------hH
Confidence 45789999999999999999998654322211111111 111122221 12357799999998642 22
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...++..++++++|++.++.-+... ..++..+.+..+.. .|+++|.||+|+.+.
T Consensus 79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK 133 (216)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc
Confidence 2345678899999999984433332 34555565555444 499999999998654
No 119
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.64 E-value=1.7e-15 Score=118.04 Aligned_cols=121 Identities=16% Similarity=0.227 Sum_probs=80.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccc-----------------------------cccCCCCceeEEEeeEEEEeeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAF-----------------------------KASAGSSGVTITCEMKTTVLKD 67 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~ 67 (170)
.+..+|+++|.+|+|||||++.|++.... .......+.|.......+.. .
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-S
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-C
Confidence 45579999999999999999999754100 00011224455555555655 6
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceE
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYM 140 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (170)
+..+.++||||+.+ +..........+|++++|+|++++ ...+..+.+..+... + ..|+
T Consensus 110 ~~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~---~~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNL 174 (483)
T ss_dssp SCEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T---CCCE
T ss_pred CceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C---CCcE
Confidence 78999999999965 233333456778999999999855 334444444444332 2 1379
Q ss_pred EEEEEcCCCCCCC
Q 046239 141 IVVFTGGDYLEDN 153 (170)
Q Consensus 141 ivv~tk~D~~~~~ 153 (170)
++|+||+|+.+.+
T Consensus 175 IvviNK~Dl~~~~ 187 (483)
T 3p26_A 175 IIAMNKMDNVDWS 187 (483)
T ss_dssp EEEEECGGGGTTC
T ss_pred EEEEECcCcccch
Confidence 9999999998743
No 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=1.3e-15 Score=104.08 Aligned_cols=118 Identities=14% Similarity=0.037 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
....+|+++|++|+|||||++.+++...........+... ....... ....+.+|||||...+..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~i~Dt~G~~~~~~----------- 70 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN----------- 70 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEECSSCEEEEEEEEECCSGGGTT-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE---EEEEEECCEEEEEEEEECCCChhhhh-----------
Confidence 4557899999999999999999997654222111111111 1122221 224688999999865321
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....+...+|++++|+|++++.+... ..++..+.+... ..|+++|.||+|+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 12245678899999999974432222 233444444322 259999999999875
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=105.38 Aligned_cols=125 Identities=21% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK 91 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~ 91 (170)
+......+|+++|.+|+|||||++.+++...........+... ....+.+ .+ ..+.+|||+|...+. .
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~---- 87 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDT--YERRIMV-DKEEVTLVVYDIWEQGDAG---G---- 87 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTE--EEEEEEE-TTEEEEEEEECCCCCSGGG---H----
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccce--EEEEEEE-CCEEEEEEEEecCCCccch---h----
Confidence 3445668999999999999999999986533211111111111 1122223 33 356789999997521 1
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.+ ...+...+|++++|+|++++.+... ..++..+..... ....|+++|.||+|+...
T Consensus 88 ~~---~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 88 WL---RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARS 145 (195)
T ss_dssp HH---HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTT
T ss_pred hh---HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhcccc
Confidence 11 1123345699999999974322221 233333333221 113599999999998754
No 122
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=7.8e-16 Score=121.47 Aligned_cols=138 Identities=20% Similarity=0.273 Sum_probs=80.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEE-ee----------------------------------
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITC-EM---------------------------------- 60 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~-~~---------------------------------- 60 (170)
.....+|+|+|.+|+|||||+|+|+|...........+.|... ..
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3456899999999999999999999976431001111111100 00
Q ss_pred --EEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhcc
Q 046239 61 --KTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-RFSQEEEAAVHRLPTLFGK 134 (170)
Q Consensus 61 --~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~~~~l~~~~~~ 134 (170)
....+ .. ..+.++||||+.+.....-.....+...+..+...+|++++|+|+.+ .....+..+++.+.+.
T Consensus 142 ~~~~~~~-~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 142 RFMCAQL-PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp TEEEEEC-CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred cceEEec-cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 00001 00 36899999999863211000000123333344556799999999975 3566666666555432
Q ss_pred cccceEEEEEEcCCCCCCChhhHHHHh
Q 046239 135 KIFDYMIVVFTGGDYLEDNEKTLEDYL 161 (170)
Q Consensus 135 ~~~~~~ivv~tk~D~~~~~~~~~~~~~ 161 (170)
..|+++|+||+|++.. ..+.+..
T Consensus 218 --~~pvilVlNK~Dl~~~--~el~~~~ 240 (550)
T 2qpt_A 218 --EDKIRVVLNKADMVET--QQLMRVY 240 (550)
T ss_dssp --GGGEEEEEECGGGSCH--HHHHHHH
T ss_pred --CCCEEEEEECCCccCH--HHHHHHH
Confidence 2489999999999865 3454443
No 123
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=3.4e-15 Score=104.60 Aligned_cols=123 Identities=8% Similarity=0.138 Sum_probs=73.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.....+|+++|++|+|||||+++|++...... ......+.... + ....+.++||||+..+. .....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHH
Confidence 45568999999999999999999998653221 11112222111 1 35678999999997532 12222
Q ss_pred HHHhccCCccEEEEEEeCC-C--CCCHHHHHHHHHHHHHhc--ccccceEEEEEEcCCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSAR-N--RFSQEEEAAVHRLPTLFG--KKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~-~--~~~~~~~~~~~~l~~~~~--~~~~~~~ivv~tk~D~~~~~ 153 (170)
++......+|++++|+|+. + .+.... .++..+..... .....|+++|+||+|+....
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTA-EFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHH-HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHH-HHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 2222223479999999997 2 332222 22333322211 01125899999999998764
No 124
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=6.1e-16 Score=120.17 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=81.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCC-CCCCCchHHH-HHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVG-KEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~-~~~~~~~~~~-~~~~~~ 96 (170)
+.+|+++|++|+|||||+|+|++....... ..++.|.......+.+ .+..+.++||||+. ++....+..+ ......
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 468999999999999999999987532221 1223444444445555 67889999999998 6543222111 112222
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+|++++|+|+++..+..+..+++.+ . ..|+++|+||+|+...
T Consensus 321 ----~~~aD~vl~VvD~s~~~s~~~~~il~~l----~---~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 ----IEKADIVLFVLDASSPLDEEDRKILERI----K---NKRYLVVINKVDVVEK 365 (482)
T ss_dssp ----HHHCSEEEEEEETTSCCCHHHHHHHHHH----T---TSSEEEEEEECSSCCC
T ss_pred ----hhcccEEEEEecCCCCCCHHHHHHHHHh----c---CCCEEEEEECcccccc
Confidence 3456999999999877777665555433 2 2499999999998754
No 125
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.8e-15 Score=113.91 Aligned_cols=123 Identities=13% Similarity=0.160 Sum_probs=82.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+|+|.|++|||||+|+|++..... ...+.+|.........+ .+..+.++||||+.+........+.+++..++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3589999999999999999999976422 23345666666666666 78899999999998765545556666766665
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhcccccceEEEEEEcCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVH-RLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.+ |++++|+|+.++. .+.+.++ .|....-.-..+|.++++||.|..
T Consensus 149 ~a----d~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TC----NLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HC----SEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hc----CccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 54 9999999987432 2333333 333321122335889999999963
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.63 E-value=1.8e-14 Score=108.35 Aligned_cols=128 Identities=21% Similarity=0.122 Sum_probs=82.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+++++|++|+|||||+|.|++....... ....|.......... .+..+.++||||+.+........+ +. ..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~-~~-~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS--YPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEI-EK-QA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC--CTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHH-HH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHH-HH-HH
Confidence 45679999999999999999999987642221 122333333344444 567899999999976432221111 11 11
Q ss_pred HHhccCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRF--SQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......+|++++|+|+++.. +... ..++..+....+ ..|+++|+||+|....
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE 295 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence 223445689999999986432 4443 455666665443 2599999999998765
No 127
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.62 E-value=9.5e-16 Score=104.25 Aligned_cols=120 Identities=17% Similarity=0.011 Sum_probs=69.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|++|+|||||++.+++...........+.... ....... ....+.++||||...+.. .
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 72 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNG-ATVNLGLWDTAGQEDYNR-----------L 72 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTT-----------T
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECC-EEEEEEEEECCCChhhhh-----------h
Confidence 45689999999999999999999975532111111100000 0011111 234566999999876431 2
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......++|++++|+|++++.+.... .++..+..... ..|+++|.||+|+...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 73 RPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence 22456788999999999743332222 34445554322 2599999999998765
No 128
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.62 E-value=7.7e-15 Score=113.09 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----------------------------cCCCCceeEEEeeEEEE
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTITCEMKTTV 64 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~ 64 (170)
.+.++..+|+++|.+++|||||++.|++...... .....+.|.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3456678999999999999999999965321000 01123566666666666
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhccccc
Q 046239 65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFS-------QEEEAAVHRLPTLFGKKIF 137 (170)
Q Consensus 65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~ 137 (170)
+ .+..+.++||||+.+ +..........+|++++|+|++++.. .+..+.+..+... ..
T Consensus 92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~---~v- 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA---GV- 155 (439)
T ss_pred c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc---CC-
Confidence 6 677999999999874 23333344567899999999986643 3444444443332 21
Q ss_pred ceEEEEEEcCCCCC
Q 046239 138 DYMIVVFTGGDYLE 151 (170)
Q Consensus 138 ~~~ivv~tk~D~~~ 151 (170)
.++++++||+|+..
T Consensus 156 ~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 156 KHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEeecCCCcc
Confidence 24999999999864
No 129
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.62 E-value=7.7e-16 Score=114.94 Aligned_cols=126 Identities=19% Similarity=0.166 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
.|+|+|.+|+|||||+|+|++...... ..+..|.......+.+.....+.++||||+.+..........++++.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~-- 235 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE-- 235 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH--
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH--
Confidence 589999999999999999998653221 1222333333444555334789999999975422222223344444333
Q ss_pred cCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARN---RFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+++++++|+|+++ +-...+ ..+++.+..........|+++|+||+|+...
T Consensus 236 --~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 236 --RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp --HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred --hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 3599999999974 222222 3344555543221234699999999998865
No 130
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.62 E-value=1.3e-15 Score=101.69 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=70.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+|+++|++|+|||||+|.+++............ . ........ .+ ..+.++||||..++. . .
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~D~~G~~~~~---~--------~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-D--SYRKQVVI-DGETCLLDILDTAGQEEYS---A--------M 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-E--EEEEEEEE-TTEEEEEEEEECCCCSSCC---H--------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-e--EEEEEEEE-CCEEEEEEEEECCCchhhh---H--------H
Confidence 36899999999999999999997654222111111 1 11122222 22 357899999987642 1 1
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
...+...+|++++|+++.+..+... ..++..+...... ...|+++|+||+|+..
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhh
Confidence 1122335699999999874322222 3334444443321 1259999999999875
No 131
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.62 E-value=2.1e-15 Score=105.05 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=74.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
.....+|+++|++|+|||||++.+++.........+.+... ...+.+. ....+.+|||||...+..
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~---------- 91 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY---TASFEIDTQRIELSLWDTSGSPYYDN---------- 91 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE---EEEEESSSSEEEEEEEEECCSGGGTT----------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE---EEEEEECCEEEEEEEEeCCCcHhhhH----------
Confidence 34557999999999999999999998654322111111111 1222221 234688999999865321
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....+...+|++++|+|+++..+... ..++..+.+... ..|+++|.||+|+..
T Consensus 92 -~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 92 -VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp -TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 12345678999999999974432222 234444444322 259999999999875
No 132
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=9.9e-15 Score=109.85 Aligned_cols=129 Identities=20% Similarity=0.258 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC-----CceeEEEeeEEEEee-CC--ceEEEEeCCCCCCCCC-----
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTITCEMKTTVLK-DG--QVVNVIDTPGLFDSSA----- 84 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~l~DtpG~~~~~~----- 84 (170)
...+|+++|++|+|||||+|+|++...+..+... ...|........... .+ ..+.++||||+.++..
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 3467999999999999999999887554332211 012222222222111 22 2688999999965422
Q ss_pred --CchHHHHHHHHHHHhc---------cCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 85 --GSEFVGKEIVKCIGLA---------KGGIHAVLVVFSA-RNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 85 --~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......++..++... ..++|+++|+++. .+.+...+..+++.+. .. .|+++|+||+|+...
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCCCH
Confidence 1122222222333221 2346788888876 5577777765555442 22 499999999999875
No 133
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.62 E-value=1.1e-14 Score=106.79 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--C-CCCce----------------------eEEE-------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS--A-GSSGV----------------------TITC------------- 58 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--~-~~~~~----------------------t~~~------------- 58 (170)
...++|+++|.+|+|||||+|+|+|......+ . ...+. +...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45579999999999999999999997643111 1 11111 0000
Q ss_pred -----------eeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHhccCCccEEE-EEEeCCCCCCHHHH-H
Q 046239 59 -----------EMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGLAKGGIHAVL-VVFSARNRFSQEEE-A 123 (170)
Q Consensus 59 -----------~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~ 123 (170)
.......+....+.++||||+..... ..+.....+......+...++.++ +|++++..++..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00011111246899999999975321 012222233344444445666555 78998766655553 3
Q ss_pred HHHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhhh
Q 046239 124 AVHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLGH 163 (170)
Q Consensus 124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~~ 163 (170)
+++.+.. . ..|+++|+||+|+..... ...+.++.
T Consensus 184 ~~~~~~~---~--~~~~i~V~NK~Dl~~~~~-~~~~~~~~ 217 (299)
T 2aka_B 184 IAKEVDP---Q--GQRTIGVITKLDLMDEGT-DARDVLEN 217 (299)
T ss_dssp HHHHHCT---T--CSSEEEEEECGGGSCTTC-CCHHHHTT
T ss_pred HHHHhCC---C--CCeEEEEEEccccCCCCc-hHHHHHhC
Confidence 4443332 1 259999999999986531 23444443
No 134
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=2.5e-15 Score=103.71 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=72.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
..+..+|+++|.+|+|||||++++++.........+.+ +.. .....+ . ...+.++||||... .. . .
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~--~~~~~~-~~~~~~~~l~Dt~G~~~----~~-~---~ 92 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-STY--RHQATI-DDEVVSMEILDTAGQED----TI-Q---R 92 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEE--EEEEEE-TTEEEEEEEEECCCCCC----CH-H---H
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCC-ceE--EEEEEE-CCEEEEEEEEECCCCCc----cc-c---h
Confidence 35668999999999999999999998654322111111 111 122222 2 24688999999975 11 1 1
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|+++..+..+ ..++..+.+.... ...|+++|.||+|+...
T Consensus 93 ----~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 93 ----EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS 147 (196)
T ss_dssp ----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG
T ss_pred ----hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc
Confidence 122345699999999974322222 2334444443321 22589999999998764
No 135
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.61 E-value=8.7e-15 Score=112.71 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=79.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cC-----------------CCCceeEEEeeEEEEe
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA-----------------GSSGVTITCEMKTTVL 65 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~-----------------~~~~~t~~~~~~~~~~ 65 (170)
.+..+|+++|..++|||||+++|++...... +. ...+.|.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4457999999999999999999985431000 00 0012333333334444
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEE
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFT 145 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~t 145 (170)
.+..+.++||||+.++ ...+ ......+|++++|+|++++...+..+.+..+... + .+++++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~----~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHH----HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEE
Confidence 5678999999998752 1222 2345788999999999878777776666555442 2 137999999
Q ss_pred cCCCCCC
Q 046239 146 GGDYLED 152 (170)
Q Consensus 146 k~D~~~~ 152 (170)
|+|+.+.
T Consensus 166 K~Dl~~~ 172 (434)
T 1zun_B 166 KMDLNGF 172 (434)
T ss_dssp CTTTTTS
T ss_pred cCcCCcc
Confidence 9999874
No 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=110.94 Aligned_cols=116 Identities=15% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+..+|+++|.+|+|||||++.+++...... ..|.......+.. .+..+.++||||...+... .
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~-----------~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRPL-----------W 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CCS-----------H
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHHH-----------H
Confidence 445899999999999999999998664221 1233344445555 6788999999997754321 2
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccc--ccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|+++.-+... ...++.+.+... ...|+++|+||+|+...
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHhccCCEEEEEEECCchHHHHH--HHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 234567899999999975444332 122222222211 13589999999998865
No 137
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.61 E-value=1.4e-15 Score=119.34 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=83.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccc---c-----------------cCCCCceeEEEeeEEEEeeCCceEEEEeCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFK---A-----------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTP 77 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~---~-----------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (170)
...+|+++|.+|+|||||+|+|++..... . .....+.|.......+.+ .+..+.|+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 45789999999999999999996211000 0 000122333344455555 67899999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
|+.++. ......+..+|++++|+|+.++.+......+..+... . .|+++|+||+|+....
T Consensus 91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCSC
T ss_pred CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCcccc
Confidence 998753 1223455678999999999988888887777766553 2 4999999999997664
No 138
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.5e-14 Score=100.62 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCc--hHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKE 92 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~~~~ 92 (170)
...++.+++++|++|+|||||+|.|+|...........+.+.... .+.+ .+ .+.++||||+....... ......
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHHHHH
Confidence 456678999999999999999999998762111011122222222 2222 22 67899999996532111 111112
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...........++++++++++....+..+....+++... ..|++++.||+|.+..
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCH
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEecccCCCc
Confidence 222222223567899999999866666555555554432 2488999999998865
No 139
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=110.52 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=71.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|.+|+|||||+|+|++........ ...+.......+.+ .+ ..+.++||||...+....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-------- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTIT-------- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCCS--------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHHH--------
Confidence 345799999999999999999999765322111 11222223333333 33 468899999987643221
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
..+...+|++++|+|+++..+... ..++..+...... ..|+++|.||+|+...
T Consensus 100 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 100 ---SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp ---CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred ---HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence 134678899999999985433222 2233333332221 2599999999998644
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.61 E-value=5.4e-15 Score=115.11 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccc-----cccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAF-----KASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
+..+|+++|..++|||||+++|++.... .......+.|.......+.+ .+..+.++||||+.+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~----------- 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD----------- 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH-----------
Confidence 4579999999999999999999986511 01122334555555555555 678999999999853
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|++++...+..+.+..+... . .|.++++||+|+.+.
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~--ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF---N--IPIIVVITKSDNAGT 140 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCBCEEEECTTSSCH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc---C--CCEEEEEECCCcccc
Confidence 334444566788999999999878777777777655542 2 377999999999864
No 141
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=7.8e-15 Score=106.39 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=72.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
..+|+++|.+|+|||||+|+|+|...... . .++.|.......+.. +..+.++||||+.++..... ...+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~-~-~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVG-N-WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCC-S-SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc-C-CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 46899999999999999999999753222 1 223343322222221 56799999999987643221 111111111
Q ss_pred hccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
....+|++++|+|+++ . .....+...+.+ .. .|+++|+||+|+..
T Consensus 77 -~~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~---~~--~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 -LSQRADSILNVVDATN-L-ERNLYLTTQLIE---TG--IPVTIALNMIDVLD 121 (272)
T ss_dssp -HTTCCSEEEEEEEGGG-H-HHHHHHHHHHHH---TC--SCEEEEEECHHHHH
T ss_pred -hcCCCCEEEEEecCCc-h-HhHHHHHHHHHh---cC--CCEEEEEEChhhCC
Confidence 1247899999999873 1 112223333332 12 59999999999753
No 142
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=8.3e-15 Score=100.47 Aligned_cols=122 Identities=20% Similarity=0.129 Sum_probs=69.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
.....+|+++|.+|+|||||++.+++.........+.+... ....... ....+.+|||||...+... .
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~ 86 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY---SSEETVDHQPVHLRVMDTADLDTPRNC--------E 86 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE---EEEEEETTEEEEEEEEECCC---CCCT--------H
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee---eEEEEECCEEEEEEEEECCCCCcchhH--------H
Confidence 34557999999999999999999997653222111111111 1112221 1246788999998765321 1
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcc-cccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGK-KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~tk~D~~~~ 152 (170)
.+...+|++++|+++++.-+... ..++..+...... ....|+++|.||+|+...
T Consensus 87 ----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 87 ----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp ----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred ----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 13456799999999974322222 2334444433210 023599999999998653
No 143
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.60 E-value=3.9e-15 Score=101.00 Aligned_cols=113 Identities=23% Similarity=0.175 Sum_probs=71.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
.+..+|+++|.+|+|||||++.+++...... ..+.+ ... ...... .+ ..+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~-~~t~~-~~~--~~~~~~-~~~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQY--KKEMLV-DGQTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCC-SSCSS-SEE--EEEEEE-TTEEEEEEEEECSSSCC------------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCc-CCCcc-eeE--EEEEEE-CCEEEEEEEEECCCCch------------h
Confidence 4568999999999999999999997654321 11111 111 122222 33 3578899999874 1
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhccc-ccceEEEEEEcCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKK-IFDYMIVVFTGGDYL 150 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~tk~D~~ 150 (170)
.+..++|++++|+|++++.+... ..+++++....... ...|+++|.||+|+.
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 12344699999999975433333 23333455543211 235999999999984
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.60 E-value=7.1e-15 Score=102.54 Aligned_cols=118 Identities=19% Similarity=0.090 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|.+|+|||||++.+++...........+... ...+.. .+ ..+.+|||||...+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVAV-DGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE---EEEEEC-SSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE---EEEEEE-CCEEEEEEEEECCCcHHHHH----------
Confidence 4568999999999999999999997653222111111111 112222 23 4788999999986532
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...+|++++|+|+++..+... ..++..+..... ..|+++|.||+|+...
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC
Confidence 12245678899999999974332222 134444544322 3599999999998765
No 145
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.60 E-value=1.2e-14 Score=110.77 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=82.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccc--------------cCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (170)
+..+|+++|..++|||||+++|++...... .....+.|.......+.. .+..+.++||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~-- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence 457899999999999999999987421100 001234455444444444 568899999999964
Q ss_pred CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCC
Q 046239 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLE 151 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~ 151 (170)
+..........+|++++|+|++++...+..+.+..+... . .| +++++||+|+..
T Consensus 79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~--vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---G--VEHVVVYVNKADAVQ 133 (397)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCS
T ss_pred ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCeEEEEEECcccCC
Confidence 333444567889999999999878777777666555442 2 25 789999999885
No 146
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.60 E-value=9.9e-15 Score=116.45 Aligned_cols=122 Identities=15% Similarity=0.217 Sum_probs=82.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--------------C---------------CCCceeEEEeeEEEEee
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A---------------GSSGVTITCEMKTTVLK 66 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--------------~---------------~~~~~t~~~~~~~~~~~ 66 (170)
..+..+|+++|.+|+|||||+|.|++....... . ...+.|.......+.+
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 456789999999999999999999875321100 0 0124455555555655
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccce
Q 046239 67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDY 139 (170)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 139 (170)
.+..+.|+||||+.+ +..........+|++++|+|++++ ...+....+..+.. ++ ..+
T Consensus 243 ~~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lg---i~~ 307 (611)
T 3izq_1 243 HRANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LG---IHN 307 (611)
T ss_dssp SSCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TT---CCE
T ss_pred CCceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cC---CCe
Confidence 678999999999975 344445567889999999999743 22333344333333 22 146
Q ss_pred EEEEEEcCCCCCCC
Q 046239 140 MIVVFTGGDYLEDN 153 (170)
Q Consensus 140 ~ivv~tk~D~~~~~ 153 (170)
+++|+||+|+...+
T Consensus 308 iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 308 LIIAMNKMDNVDWS 321 (611)
T ss_dssp EEEEEECTTTTTTC
T ss_pred EEEEEecccccchh
Confidence 99999999998743
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.58 E-value=3.4e-14 Score=106.98 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=74.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+++++|++|+|||||+|.|++...... .....|.......+.+ .+..+.++||||+... .+......+.....
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~--lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRG--IPPQIVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSS--CCGGGHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhc--CCHHHHHHHHHHHH-
Confidence 3599999999999999999999764221 1122333333344555 5678899999998541 11222233333332
Q ss_pred ccCCccEEEEEEeCCCCCC--HHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 100 AKGGIHAVLVVFSARNRFS--QEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 100 ~~~~~~~il~v~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+|++++|+|+++..+ .... .+.+.+.+. +. ...|+++|.||+|++..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~-~~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GV-SGKPILVTLNKIDKING 307 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TC-CSCCEEEEEECGGGCCS
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-Cc-CCCCEEEEEECCCCCCc
Confidence 4567899999999874431 1111 223333332 21 12589999999999865
No 148
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.58 E-value=1.1e-14 Score=99.59 Aligned_cols=115 Identities=23% Similarity=0.142 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGK 91 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~ 91 (170)
....+..+|+++|.+|+|||||++.+++........ +... .......+ .+ ..+.+|||||...+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~-~t~~---~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-------- 81 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES-PEGG---RFKKEIVV-DGQSYLLLIRDEGGPPELQ-------- 81 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC-TTCE---EEEEEEEE-TTEEEEEEEEECSSSCCHH--------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-CCcc---eEEEEEEE-CCEEEEEEEEECCCChhhh--------
Confidence 445567899999999999999999998765432211 1111 11133333 34 356779999997621
Q ss_pred HHHHHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 92 EIVKCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 92 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
+...+|++++|+|+++..+..+ ..++..+..... ....|+++|.||+|+.
T Consensus 82 --------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 --------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp --------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred --------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 2234699999999985433333 233343433211 1235999999999984
No 149
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.58 E-value=3e-15 Score=102.40 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe------eCCceEEEEeCCCCCCCCCCchHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL------KDGQVVNVIDTPGLFDSSAGSEFVGKE 92 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~~~~~~~~~~ 92 (170)
..+|+++|++|+|||||++.+++......+. ...|.......... .....+.+|||+|...+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------- 70 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGM--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY--------- 70 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHHHH---------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCC--cceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH---------
Confidence 3689999999999999999999863211111 11111111111111 134578999999975321
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEE--EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+..+.+++++|+|++++.+..+ ..++..+.... ...|+++|.||+|+...
T Consensus 71 --~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 71 --STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE 127 (184)
T ss_dssp --TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH
T ss_pred --HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc
Confidence 111122345688999999874422111 23333333321 12589999999998755
No 150
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.58 E-value=1.3e-14 Score=113.99 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=80.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccc--c------------------CCCCceeEEEeeEEEEeeCCceEEEEeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKA--S------------------AGSSGVTITCEMKTTVLKDGQVVNVIDT 76 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 76 (170)
....+|+++|.+|+|||||+++|++...... + ....+.|.......+.+ .+..+.++||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEEC
Confidence 3457999999999999999999985321100 0 01122333333344555 6788999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
||+.++. ......+..+|++++|+|+.++........++.+... . .|+++++||+|.....
T Consensus 90 PG~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---D--TPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---T--CCEEEEEECTTSCCSC
T ss_pred CCChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---C--CCEEEEEcCcCCcccc
Confidence 9998753 1122345678999999999878777766666554432 2 4899999999998764
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=7.7e-14 Score=106.65 Aligned_cols=122 Identities=16% Similarity=0.268 Sum_probs=78.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-cCCCCceeEEEeeEEEEee--------------C--------CceEE
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTITCEMKTTVLK--------------D--------GQVVN 72 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~ 72 (170)
..+..+|+++|..++|||||+++|+|...... .....+.|.........+. . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 34668999999999999999999997642111 1112233333222211110 0 15789
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
++||||+.+ +..........+|++++|+|++++. ..+..+.+..+.. ++. .|+++++||+|+..
T Consensus 85 iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 85 FVDSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVD 149 (408)
T ss_dssp EEECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSC
T ss_pred EEECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCC
Confidence 999999853 3333445567889999999998765 5666665554443 222 48999999999886
Q ss_pred C
Q 046239 152 D 152 (170)
Q Consensus 152 ~ 152 (170)
.
T Consensus 150 ~ 150 (408)
T 1s0u_A 150 E 150 (408)
T ss_dssp T
T ss_pred H
Confidence 5
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.58 E-value=5.7e-15 Score=112.80 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=80.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc---------------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS---------------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
...+..+|+++|.+++|||||+++|++....... ....+.|.......+.. .+..+.++||||+
T Consensus 7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~ 85 (405)
T 2c78_A 7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGH 85 (405)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCS
T ss_pred CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCCh
Confidence 3455689999999999999999999873110000 00122333333333444 5678999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLE 151 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~ 151 (170)
.++ ..........+|++++|+|+.++...+..+.+..+... . .| +++++||+|+..
T Consensus 86 ~~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~---~--ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 86 ADY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV---G--VPYIVVFMNKVDMVD 142 (405)
T ss_dssp GGG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCC
T ss_pred HHH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc---C--CCEEEEEEECccccC
Confidence 853 22223345678999999999878777777766655543 2 25 899999999885
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.58 E-value=1.9e-14 Score=110.07 Aligned_cols=123 Identities=15% Similarity=0.245 Sum_probs=79.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc-ccCCCCceeEEEeeEEEEee----------------------CCceE
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTITCEMKTTVLK----------------------DGQVV 71 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~----------------------~~~~~ 71 (170)
+..+..+|+++|..++|||||+++|+|..... ......+.|.........+. ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 34556799999999999999999999754211 11111233333222221110 01578
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 72 NVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 72 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.++||||+.+ +..........+|++++|+|++++. ..+..+.+..+... +. .|+++++||+|+.
T Consensus 86 ~iiDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~ 150 (410)
T 1kk1_A 86 SFIDAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELV 150 (410)
T ss_dssp EEEECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGS
T ss_pred EEEECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCC
Confidence 9999999853 2333334556789999999998776 66666666555432 22 4899999999988
Q ss_pred CC
Q 046239 151 ED 152 (170)
Q Consensus 151 ~~ 152 (170)
..
T Consensus 151 ~~ 152 (410)
T 1kk1_A 151 DK 152 (410)
T ss_dssp CH
T ss_pred CH
Confidence 75
No 154
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.58 E-value=2.6e-14 Score=109.12 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeE--------------EE-----eeEEEEeeCCceEEEEe
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTI--------------TC-----EMKTTVLKDGQVVNVID 75 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~--------------~~-----~~~~~~~~~~~~~~l~D 75 (170)
...+..+|+++|.+|+|||||+|+|++...... ......+. .. ....... ....+.++|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiD 81 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFID 81 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceeccccccccccccccc-ccceEEEEE
Confidence 345678999999999999999999998532110 00000000 00 0000000 125789999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF-SQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
|||+.+ +..........+|++++|+|++++. ..+..+.+..+... +. +|+++|+||+|+.+.
T Consensus 82 tPGh~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 82 APGHEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK 144 (403)
T ss_dssp CCCCGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred CCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch
Confidence 999864 2223334456789999999998776 55566666555443 22 489999999999866
No 155
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.57 E-value=4.2e-15 Score=115.14 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=77.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc---cc-----------cccC---------------CCCceeEEEeeEEEEeeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK---AF-----------KASA---------------GSSGVTITCEMKTTVLKD 67 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~---~~-----------~~~~---------------~~~~~t~~~~~~~~~~~~ 67 (170)
.+..+|+++|.+++|||||+++|++.. .. ..+. ...+.|.......+.. .
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~ 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-P 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-S
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-C
Confidence 345799999999999999999998531 00 0000 0123454444455555 5
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhcccccceE
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQ-------EEEAAVHRLPTLFGKKIFDYM 140 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ 140 (170)
+..+.++||||+.+ +..........+|++++|+|+.++... +..+.+..+.. . .. .++
T Consensus 84 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~--~v-~~i 148 (458)
T 1f60_A 84 KYQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-L--GV-RQL 148 (458)
T ss_dssp SEEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-T--TC-CEE
T ss_pred CceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-c--CC-CeE
Confidence 77899999999874 333444567899999999999754322 33333332222 2 11 359
Q ss_pred EEEEEcCCCCCC
Q 046239 141 IVVFTGGDYLED 152 (170)
Q Consensus 141 ivv~tk~D~~~~ 152 (170)
++++||+|+...
T Consensus 149 ivviNK~Dl~~~ 160 (458)
T 1f60_A 149 IVAVNKMDSVKW 160 (458)
T ss_dssp EEEEECGGGGTT
T ss_pred EEEEEccccccC
Confidence 999999999853
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.57 E-value=1.3e-14 Score=111.71 Aligned_cols=119 Identities=24% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc---ccc--------------------------ccCCCCceeEEEeeEEEEeeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK---AFK--------------------------ASAGSSGVTITCEMKTTVLKD 67 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~---~~~--------------------------~~~~~~~~t~~~~~~~~~~~~ 67 (170)
.+..+|+++|..|+|||||+++|++.. ... ......+.|.......+.+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 456799999999999999999998531 000 0011234555555555555 6
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhcccccceE
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-------FSQEEEAAVHRLPTLFGKKIFDYM 140 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (170)
+..+.++||||+.++ ..........+|++++|+|+.++ ...+..+.+..+.. ++ ..++
T Consensus 83 ~~~~~iiDtpG~~~f-----------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~---~~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-----------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MG---LDQL 147 (435)
T ss_dssp SCEEEECCCSSSTTH-----------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TT---CTTC
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeE
Confidence 788999999999862 23344567889999999999854 22233333333332 21 1368
Q ss_pred EEEEEcCCCCC
Q 046239 141 IVVFTGGDYLE 151 (170)
Q Consensus 141 ivv~tk~D~~~ 151 (170)
++++||+|+..
T Consensus 148 ivviNK~Dl~~ 158 (435)
T 1jny_A 148 IVAVNKMDLTE 158 (435)
T ss_dssp EEEEECGGGSS
T ss_pred EEEEEcccCCC
Confidence 99999999987
No 157
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.57 E-value=1.4e-14 Score=99.00 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=69.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL 99 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 99 (170)
.+|+++|++|+|||||+|++++...... . .++.+. ......+ . .+.++||||+.............+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-~~~~t~--~~~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG-K-RPGVTR--KIIEIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS-S-STTCTT--SCEEEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC-C-CCCccc--eeEEEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 4799999999999999999998763221 1 122222 2222333 2 788999999865433222222222222222
Q ss_pred c----cCCccEEEEEEeCCCCCCHHHHHHHH--------HHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 100 A----KGGIHAVLVVFSARNRFSQEEEAAVH--------RLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 100 ~----~~~~~~il~v~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+ ...+++++++.+.. .+......+.. .+..... ....|+++|.||+|+....
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEEEEEECGGGCSCH
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHH-hcCCceEEEeehHhccCcH
Confidence 1 34567788888765 22111111111 0111111 1125999999999988763
No 158
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.57 E-value=4e-14 Score=110.73 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
....+|+++|.+|+|||||+|+|++...... ..|.......+.+ .+..+.++||||...+. ..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-----IPTVGFNVETVTY-KNVKFNVWDVGGQDKIR-----------PL 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEES-SSCEEEEEEECCCGGGS-----------GG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-----CCccceeEEEEEe-CCEEEEEEECCCcHHHH-----------HH
Confidence 3457899999999999999999998763211 1233344445555 67899999999976532 22
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc--cccceEEEEEEcCCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK--KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~tk~D~~~~ 152 (170)
...++..+|++++|+|+++..+... ...++.+++.. ....|+++|+||+|+...
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 3356788999999999985433332 22233333221 123599999999998765
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.56 E-value=3.7e-16 Score=122.47 Aligned_cols=117 Identities=16% Similarity=0.211 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
..++|+++|.+|+|||||+++|++...... ...+.|.....+...+..+..+.+|||||+..+.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~---------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA---------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH----------
Confidence 457899999999999999999997654332 22234443333333333456789999999987643222
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+|++++|++++++...+....+..+... . .|+++++||+|+...
T Consensus 71 -~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 71 -RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEA 119 (537)
T ss_dssp -SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTT
T ss_pred -HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEeccccccc
Confidence 355678999999999888888877776665543 2 489999999998754
No 160
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.56 E-value=7.2e-14 Score=113.01 Aligned_cols=121 Identities=26% Similarity=0.312 Sum_probs=81.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC---Cccccc----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFKA----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
.....+|+++|.+|+|||||+|+|++ ...... + ....+.|.........+ .+..+.++||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 34567999999999999999999984 211000 0 00123444444455556 6788999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.++. .+... .+..+|++++|+|+.++.+..+...+..+... . .|+++|+||+|+...+
T Consensus 86 ~df~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 86 VDFT-------VEVER----SLRVLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SSCC-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCC
T ss_pred cchH-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCccccc
Confidence 8753 12222 22346999999999888888887777766553 2 4999999999998763
No 161
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.56 E-value=4.8e-14 Score=105.85 Aligned_cols=139 Identities=14% Similarity=0.158 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccccc--CCCC-ce-eEEE-----------------------------------
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS--AGSS-GV-TITC----------------------------------- 58 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--~~~~-~~-t~~~----------------------------------- 58 (170)
..++|+++|.+|+|||||+|+|+|......+ .... +. +...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3478999999999999999999997642211 1111 11 0000
Q ss_pred ----------eeEEEEeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHHhcc-CCccEEEEEEeCCCCCCHHHH-HH
Q 046239 59 ----------EMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKCIGLAK-GGIHAVLVVFSARNRFSQEEE-AA 124 (170)
Q Consensus 59 ----------~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~-~~ 124 (170)
....+..+....+.||||||+...... .......+..+...+. ...+++++|++++..+...+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 001111112467999999999753211 1222223333333333 344567777787655554443 23
Q ss_pred HHHHHHHhcccccceEEEEEEcCCCCCCChhhHHHHhh
Q 046239 125 VHRLPTLFGKKIFDYMIVVFTGGDYLEDNEKTLEDYLG 162 (170)
Q Consensus 125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~~~~~~~~~ 162 (170)
++.+.. .. .|+++|+||+|+++.. ....++++
T Consensus 190 ~~~~~~---~~--~~~i~V~NK~Dl~~~~-~~~~~~~~ 221 (353)
T 2x2e_A 190 AKEVDP---QG--QRTIGVITKLDLMDEG-TDARDVLE 221 (353)
T ss_dssp HHHHCT---TC--TTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred HHHhCc---CC--CceEEEeccccccCcc-hhHHHHHh
Confidence 333322 22 5999999999998653 12344444
No 162
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.55 E-value=7.6e-14 Score=110.09 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=86.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCc--------------------cccccCCCCceeEEEeeEEEEeeCCceEEEEeCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRK--------------------AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTP 77 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~--------------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp 77 (170)
+-++|+|+|..++|||||..+|+-.. .+.......+.|+......+.| ++..+.|+|||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 45899999999999999998875111 0011123345666666677778 88999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
|+.+|. .+.... +.-+|.+++|+|+.++...+....++...+. + .|.++++||+|....+.
T Consensus 109 GHvDF~-------~Ev~ra----L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~--lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 109 GHQDFS-------EDTYRV----LTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---A--TPVMTFVNKMDREALHP 169 (548)
T ss_dssp CGGGCS-------HHHHHH----HHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSCCCCH
T ss_pred CcHHHH-------HHHHHH----HHhcCceEEEeecCCCcccccHHHHHHHHHh---C--CceEEEEecccchhcch
Confidence 999874 233333 3445999999999999999999888877775 2 49999999999987743
No 163
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=6.4e-14 Score=98.05 Aligned_cols=121 Identities=22% Similarity=0.133 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...+|+++|.+|+|||||+|.+++.... .....+.+.+. ......+ .+. .+.++||+|... +..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~--~~~~i~~-~~~~~~l~~~Dt~g~~~----------~~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT--YERTLMV-DGESATIILLDMWENKG----------ENE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE--EEEEEEE-TTEEEEEEEECCTTTTH----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee--EEEEEEE-CCeeeEEEEeecCCCcc----------hhh
Confidence 3478999999999999999999975421 11111111111 1122233 333 467899998753 112
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEE-AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.....+...++++++|+++++.-+.... .++..+.+... ....|+++|.||+|+.+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~ 160 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRC 160 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGG
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcC
Confidence 2234466788999999999743222221 23333332211 113599999999998653
No 164
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.55 E-value=1.7e-13 Score=110.88 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=80.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC---Cccccc----c---------CCCCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG---RKAFKA----S---------AGSSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~---~~~~~~----~---------~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
.....+|+++|.+|+|||||+++|+. ...... + ....+.|.........+ .+..+.++||||+
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 87 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGH 87 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCc
Confidence 34567999999999999999999983 211000 0 01223444455555666 6789999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.++. .+... .+..+|++++|+|+.++.+......+..+... . .|+++|+||+|....+
T Consensus 88 ~df~-------~~~~~----~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 88 VDFT-------IEVER----SMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGAD 145 (691)
T ss_dssp TTCH-------HHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCC
T ss_pred cchH-------HHHHH----HHHHCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccCC
Confidence 8641 12222 33456999999999888888877777665543 2 4899999999998764
No 165
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=102.19 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=74.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCc-----eeEEEeeEEEEee---CCceEEEEeCCCCCCCCCCc---h
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-----VTITCEMKTTVLK---DGQVVNVIDTPGLFDSSAGS---E 87 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~-----~t~~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~---~ 87 (170)
.++++++|+||+|||||+|+|+|...+..|..... .+.......+... -...+.++|+||+....... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 36899999999999999999999876655422111 1110011111110 12367999999997532211 1
Q ss_pred HHH----HHHHHHHHh----------ccCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 88 FVG----KEIVKCIGL----------AKGGIHAVLVVFSA-RNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 88 ~~~----~~~~~~~~~----------~~~~~~~il~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
... .++...... ...++++.+++++. .+++++.+..+++.+.+. .++++|+||+|.+..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 111 111111111 22346788888885 478999998777777653 389999999999976
Q ss_pred C
Q 046239 153 N 153 (170)
Q Consensus 153 ~ 153 (170)
.
T Consensus 156 ~ 156 (270)
T 3sop_A 156 E 156 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=5e-14 Score=114.00 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCce-------------eEEE-------------------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV-------------TITC------------------------- 58 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~-------------t~~~------------------------- 58 (170)
....+|+++|.+|+|||||+|+|+|......+..+... +...
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 45689999999999999999999997654332211110 1100
Q ss_pred --------------eeEEEEeeCC---ceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHH
Q 046239 59 --------------EMKTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEE 121 (170)
Q Consensus 59 --------------~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 121 (170)
....+.++.. ..+.++||||+.+... ....+..+...+|++++|++++...+..+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 0000111000 4689999999975211 12223334467899999999987788777
Q ss_pred HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 122 EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+... +... ..|+++|+||+|+...
T Consensus 219 ~~~l~~~---l~~~-~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 219 RRYLENY---IKGR-GLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHH---TTTS-CCCEEEEEECGGGGGG
T ss_pred HHHHHHH---HHhh-CCCEEEEEECcccccc
Confidence 6555322 1111 2489999999998754
No 167
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=9.4e-14 Score=112.46 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=80.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC--CC------------------------------------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SS------------------------------------------ 52 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~--~~------------------------------------------ 52 (170)
..-++|+++|.+++|||||+|+|+|......+.. +.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 3457999999999999999999999764222111 10
Q ss_pred -----ceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHHh-ccCCccEEEEEEeCCCCCCHHHH-H
Q 046239 53 -----GVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKCIGL-AKGGIHAVLVVFSARNRFSQEEE-A 123 (170)
Q Consensus 53 -----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~il~v~~~~~~~~~~~~-~ 123 (170)
+.+.......+..+....+.|+||||+..... .+......+..++.. ....+|++++|+|++..+...+. .
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00000011122233455789999999987321 111112222222222 22678999999999876666664 4
Q ss_pred HHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 124 AVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 124 ~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+++.+... ..|+++|+||+|++...
T Consensus 209 ll~~L~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 209 IAKEVDPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred HHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence 55554432 25999999999998663
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.53 E-value=2.6e-13 Score=103.65 Aligned_cols=131 Identities=19% Similarity=0.187 Sum_probs=69.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC----CceeEEEeeEEE--Ee-eCCceEEEEeCCCCCCCCCCch-
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTITCEMKTT--VL-KDGQVVNVIDTPGLFDSSAGSE- 87 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~----~~~t~~~~~~~~--~~-~~~~~~~l~DtpG~~~~~~~~~- 87 (170)
..-...|+|+|+||+|||||+|.|+|...+..+... ...+.......+ .. .....+.++||+|+........
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 344467899999999999999999998753322110 011111111111 11 0123688999999986422111
Q ss_pred --HHHH----HHHHH-------HHhcc--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 88 --FVGK----EIVKC-------IGLAK--GGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 88 --~~~~----~~~~~-------~~~~~--~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
.... .+..+ .+... +.+|+++|++++. ..++..+..+++.+.. . .++|+|+||+|++.
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~ 181 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLT 181 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCcc
Confidence 1111 11111 11122 3456778877775 5788888666665542 2 49999999999987
Q ss_pred C
Q 046239 152 D 152 (170)
Q Consensus 152 ~ 152 (170)
.
T Consensus 182 ~ 182 (418)
T 2qag_C 182 P 182 (418)
T ss_dssp H
T ss_pred H
Confidence 5
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.53 E-value=3.9e-14 Score=106.85 Aligned_cols=101 Identities=14% Similarity=0.209 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|.+++|||||+++|+ ..+.|.......+.+ .+..+.++||||+.++ ...+. ..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~----~~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLI----TA 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHH----HH
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHH----HH
Confidence 89999999999999999998 123333344444555 5778999999999864 12222 23
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE-EEEEE-cCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM-IVVFT-GGDY 149 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~t-k~D~ 149 (170)
...+|++++|+| +++...+..+.+..+... + .|. ++++| |+|+
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 356799999999 777777777666655543 2 244 88999 9998
No 170
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.29 E-value=6.2e-16 Score=107.37 Aligned_cols=119 Identities=17% Similarity=0.021 Sum_probs=73.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe-eCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
.+..+|+++|.+|+|||||++++++.......... +.......... .....+.+|||||...+ ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 93 (204)
Confidence 56689999999999999999999875432211111 11111111111 02345669999998753 22
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.......++|++++|+|++++.+..+. .++..+..... ..|+++|+||+|+...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 149 (204)
Confidence 333455678999999998754333332 34444444322 2599999999998754
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.53 E-value=6.6e-15 Score=114.59 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=80.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
+.++|+++|..++|||||+++|++....... ..+.|.....+.+.+ .+..+.++||||+.+|....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~~----------- 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSMR----------- 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTSB-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHHH-----------
Confidence 4578999999999999999999874332211 123333333333444 56788999999998764322
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
......+|++++|++++++...+..+.+..+... . .|+++++||+|+...
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEA 118 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTT
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEecccccc
Confidence 1345678999999999877666666665554432 2 489999999998764
No 172
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.52 E-value=3e-13 Score=109.56 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=81.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCc---cccc----c---------CCCCceeEEEeeEEEEeeCC-------ceEE
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRK---AFKA----S---------AGSSGVTITCEMKTTVLKDG-------QVVN 72 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~---~~~~----~---------~~~~~~t~~~~~~~~~~~~~-------~~~~ 72 (170)
.....+|+++|..|+|||||++.|+... .... + ....+.|.........+ .+ ..+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEE
Confidence 4456899999999999999999996421 1000 0 00123444444445555 44 7899
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 73 VIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 73 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
||||||+.+|. .+ ....+..+|++++|+|+.++...+....++.+... . .|+++|+||+|....
T Consensus 86 liDTPG~~df~-------~~----~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFT-------IE----VERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchH-------HH----HHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence 99999998642 12 22334566999999999877776666666554432 2 489999999998866
Q ss_pred C
Q 046239 153 N 153 (170)
Q Consensus 153 ~ 153 (170)
+
T Consensus 150 ~ 150 (704)
T 2rdo_7 150 N 150 (704)
T ss_pred c
Confidence 3
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.52 E-value=7.8e-14 Score=96.43 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKC 96 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~ 96 (170)
..+++++|++|+|||||++.|++...........+ .......+.+ .+. .+.++||||...+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~--~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~---------- 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG--VEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT---------- 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCS--CEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh----------
Confidence 46899999999999999999998754322111111 1222233333 343 46789999986532111
Q ss_pred HHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 97 IGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 97 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
......++++++|+|+.+..+..+ ..++..+..... ...|++++.||+|+..
T Consensus 72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 72 -SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 124 (199)
T ss_dssp -HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred -HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc
Confidence 123356789999999874333222 223333333211 2258999999999864
No 174
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.51 E-value=2.1e-13 Score=101.04 Aligned_cols=118 Identities=19% Similarity=0.083 Sum_probs=74.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCce--EEEEeCCCCCCCCCCchHHHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
....+|+++|.+|+|||||++.+++.......... +.......... .+.. +.++||||...+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 217 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT---VFDNYSANVMV-DGKPVNLGLWDTAGLEDYD----------- 217 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC---SEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc---ccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------
Confidence 34578999999999999999999865432221111 11111222223 4444 5599999987532
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEEE--AAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
.........+|++++|+|++++.+..+. .++..+..... ..|+++|.||+|+...
T Consensus 218 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 218 RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 274 (332)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence 2223456789999999999754333332 34444544322 3599999999998654
No 175
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=2.1e-13 Score=103.94 Aligned_cols=131 Identities=15% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCCcE--EEEEcCCCCCHHHHHHHhhCCccccccCC--CCceeEEEeeEEEEeeCC--ceEEEEeCCCCCCCCCCch--
Q 046239 16 SIGERT--VVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTITCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSE-- 87 (170)
Q Consensus 16 ~~~~~~--i~lvG~~gsGKSTlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~-- 87 (170)
..++.. ++|+|+||+|||||+|+|+|......... ..+.+.....+.+.. .. ..+.++|++|+........
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~-~~l~~~ltv~D~~~~g~~~~~~~~~ 115 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE-SNVRLKLTIVSTVGFGDQINKEDSY 115 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec-Cccccccchhhhhhhhhccccchhh
Confidence 345556 99999999999999999999853211111 112222211122211 11 2688999999986322110
Q ss_pred -H----HHHHHHHHHHhc-----------cCCccE-EEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 88 -F----VGKEIVKCIGLA-----------KGGIHA-VLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 88 -~----~~~~~~~~~~~~-----------~~~~~~-il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
. ...++..++... ..++|+ ++++.|..++++..+..+++.|.. . .|+|+|+||+|.+
T Consensus 116 ~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~----~--~~vI~Vi~KtD~L 189 (427)
T 2qag_B 116 KPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS----K--VNIIPIIAKADAI 189 (427)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS----C--SEEEEEESCGGGS
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh----C--CCEEEEEcchhcc
Confidence 0 111222222211 112344 666777777888888777666642 2 4999999999999
Q ss_pred CCC
Q 046239 151 EDN 153 (170)
Q Consensus 151 ~~~ 153 (170)
...
T Consensus 190 t~~ 192 (427)
T 2qag_B 190 SKS 192 (427)
T ss_dssp CHH
T ss_pred chH
Confidence 763
No 176
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.50 E-value=7.9e-14 Score=110.80 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=78.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee-----------------CCceEEEEeCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK-----------------DGQVVNVIDTPGLF 80 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~DtpG~~ 80 (170)
+.++|+++|.+++|||||+++|++........ .+.|.........+. ....+.++||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~--ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA--GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC--CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 35789999999999999999998754322111 112211111111110 11258999999998
Q ss_pred CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
+|..... .....+|++++|+|+++++..+....+..+... . .|+++++||+|+..
T Consensus 82 ~F~~~~~-----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLRK-----------RGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSBC-----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred HHHHHHH-----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence 8753322 345678999999999988888887777766542 2 49999999999874
No 177
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.50 E-value=2e-13 Score=108.50 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=71.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccc-------------cCCCCceeEEEeeEEEEeeC----CceEEEEeCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA-------------SAGSSGVTITCEMKTTVLKD----GQVVNVIDTPGLFD 81 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~-------------~~~~~~~t~~~~~~~~~~~~----~~~~~l~DtpG~~~ 81 (170)
-.+|+++|..++|||||+++|+....... .....+.|.........|.. ...+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 46899999999999999999975221000 01123444444444444421 25788999999986
Q ss_pred CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
| ..+.... +..+|++++|+|+.++.+.+....+...... . .|+++|+||+|+...+
T Consensus 84 F-------~~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 84 F-------SYEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAAD 139 (599)
T ss_dssp G-------HHHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred H-------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCccccc
Confidence 3 2233333 3445999999999878777766555444332 2 4899999999998764
No 178
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.50 E-value=4.4e-13 Score=106.42 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccc--c-----------CCCCceeEEEeeEEEEee--C--CceEEEEeCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--S-----------AGSSGVTITCEMKTTVLK--D--GQVVNVIDTPGLF 80 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~--~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~l~DtpG~~ 80 (170)
.-.+|+++|..++|||||+++|+....... + ....+.|.........|. . ...+.++||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 346899999999999999999975211000 0 011233433333334331 1 2578899999998
Q ss_pred CCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 81 DSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+| ..+.. ..+..+|++++|+|+.++.+.+....+...... . .|+++++||+|+...+
T Consensus 85 dF-------~~ev~----r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 85 DF-------SYEVS----RALAACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSAD 141 (600)
T ss_dssp GG-------HHHHH----HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred hH-------HHHHH----HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCccccC
Confidence 64 12222 234566999999999888887776655544432 2 4899999999998764
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=3.7e-13 Score=102.35 Aligned_cols=91 Identities=16% Similarity=0.114 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEe--------------------eC---CceEEEEeC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVL--------------------KD---GQVVNVIDT 76 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dt 76 (170)
.+|+++|.+|+|||||+|+|++... .. ...+..|.........+ .. ...+.++||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3689999999999999999998762 11 11122222221111100 01 246899999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC
Q 046239 77 PGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR 116 (170)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~ 116 (170)
||+..+..... .+...+......+|++++|+|+.+.
T Consensus 79 pG~~~~a~~~~----~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGR----GLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhh----hHHHHHHHHHhcCCEEEEEEecccc
Confidence 99975322111 1112222356789999999999743
No 180
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.47 E-value=3.6e-13 Score=112.62 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFD 81 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 81 (170)
..+..+|+++|..++|||||+++|++..... ......+.|.......+.. .+..+.++||||+.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH
Confidence 4456899999999999999999998741100 0011233444333334444 568899999999974
Q ss_pred CCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EEEEEEcCCCCCC
Q 046239 82 SSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MIVVFTGGDYLED 152 (170)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~tk~D~~~~ 152 (170)
+..........+|++++|+|++++...+..+.+..+... . .| +++++||+|+...
T Consensus 372 -----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---g--IP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 372 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---G--VPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp -----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---T--CSCEEEEEECCTTCCC
T ss_pred -----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---C--CCeEEEEEeecccccc
Confidence 334444567889999999999877776766666555442 2 25 7999999999863
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.47 E-value=1e-12 Score=105.87 Aligned_cols=118 Identities=26% Similarity=0.231 Sum_probs=81.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccc--cccC-----C---------CCceeEEEeeEEEEeeCCceEEEEeCCCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAF--KASA-----G---------SSGVTITCEMKTTVLKDGQVVNVIDTPGL 79 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~--~~~~-----~---------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 79 (170)
..+..+|+++|++|+|||||++.|++.... ..+. . ..+.+.........+ ....+.++||||+
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~ 84 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGY 84 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCS
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCc
Confidence 356789999999999999999999843321 0000 0 112333334444444 6778999999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
.++ ..+... .+..+|++++|+|+.++........++.+... . .|+++++||+|..
T Consensus 85 ~~f-------~~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDF-------VGEIRG----ALEAADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG 139 (665)
T ss_dssp GGG-------HHHHHH----HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred cch-------HHHHHH----HHhhcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence 763 122333 33456999999999888888877777766653 2 4899999999987
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=4.1e-13 Score=99.09 Aligned_cols=121 Identities=13% Similarity=0.058 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA 100 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (170)
+|+++|.+|+||||+++.+.+...+.. ....+.|......... ....+.+|||+|..++.... + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v~--~~v~LqIWDTAGQErf~~~~--l------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHFS--TLIDLAVMELPGQLNYFEPS--Y------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEEC--SSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEEc--cEEEEEEEECCCchhccchh--h------hhhhh
Confidence 478999999999999998876543221 1112233333322221 34689999999999763100 0 11234
Q ss_pred cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 101 KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 101 ~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
+++++++++|+|+++++...-..+.+++.+........|++++.||+|+..+
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 6788999999999866333222232333322111122489999999998865
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.47 E-value=9.2e-13 Score=90.56 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
...+++++|++|+|||||++.+++.........+ .+.......+.+ .+.. +.++||+|...+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t--~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~--------- 95 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKST--IGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAIT--------- 95 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCC--CSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCC---------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCc--cceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhh---------
Confidence 3468999999999999999999987653322222 222222333444 4443 4569999987643211
Q ss_pred HHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 96 CIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
......++++++|+|..+..+... ..++..+.+.. ....+++++.||+|+.+
T Consensus 96 --~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 96 --SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp --HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred --HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence 122355688999999863322211 12333333321 12358999999999764
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.46 E-value=1.5e-14 Score=115.14 Aligned_cols=122 Identities=19% Similarity=0.199 Sum_probs=61.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc-----------------------------cCCCCceeEEEeeEEEEee
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SAGSSGVTITCEMKTTVLK 66 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 66 (170)
.++..+|+++|.+++|||||++.|++...... .....+.|.......+.+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence 34557899999999999999999964211000 001234455555555555
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhcccccce
Q 046239 67 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR-----F--SQEEEAAVHRLPTLFGKKIFDY 139 (170)
Q Consensus 67 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~ 139 (170)
.+..+.|+||||+.++... .......+|++|+|+|++++ + ..+....+..+... +. .+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~ 317 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SE 317 (592)
T ss_dssp ------CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CC
T ss_pred CCeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---Ce
Confidence 5678999999999864211 11234567999999999753 2 44555555544442 21 25
Q ss_pred EEEEEEcCCCCCCC
Q 046239 140 MIVVFTGGDYLEDN 153 (170)
Q Consensus 140 ~ivv~tk~D~~~~~ 153 (170)
+++|+||+|+...+
T Consensus 318 iIvviNKiDl~~~~ 331 (592)
T 3mca_A 318 IVVSVNKLDLMSWS 331 (592)
T ss_dssp EEEEEECGGGGTTC
T ss_pred EEEEEecccccccc
Confidence 99999999988743
No 185
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.46 E-value=2.1e-13 Score=105.85 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=66.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccc--------------cc---------------CCCCceeEEEeeEEEEeeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTITCEMKTTVLKD 67 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (170)
.+..+|+++|..++|||||++.|++..... .+ ....+.|+......+.+ .
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 455789999999999999999986421000 00 01234455444445555 5
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhcccccceE
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFS-------QEEEAAVHRLPTLFGKKIFDYM 140 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~ 140 (170)
+..+.++||||+.++ ..........+|++++|+|+.++.. .+..+.+..+.. . .. .++
T Consensus 120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~--~v-p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-Q--GI-NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-T--TC-SSE
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-c--CC-CEE
Confidence 788999999999764 2222345678899999999985531 223333333322 1 21 249
Q ss_pred EEEEEcCCCCC
Q 046239 141 IVVFTGGDYLE 151 (170)
Q Consensus 141 ivv~tk~D~~~ 151 (170)
++++||+|+..
T Consensus 185 ivviNK~Dl~~ 195 (467)
T 1r5b_A 185 VVVINKMDEPS 195 (467)
T ss_dssp EEEEECTTSTT
T ss_pred EEEEECccCCC
Confidence 99999999864
No 186
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.45 E-value=2.9e-13 Score=106.73 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=72.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeE----EEEe---eCCceEEEEeCCCCCCCCCCchH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMK----TTVL---KDGQVVNVIDTPGLFDSSAGSEF 88 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~l~DtpG~~~~~~~~~~ 88 (170)
.....+|+++|.+|+|||||+|++++.........+.+.+...... .... .....+.++||||...+.....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~- 116 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ- 116 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH-
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH-
Confidence 4556899999999999999999999865422111111111110000 0001 0256799999999876532211
Q ss_pred HHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 89 VGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
.+..+++++++|+|++.. .....++..+..... ..|+++|.||+|+....
T Consensus 117 ----------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 117 ----------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGG---KSPVIVVMNKIDENPSY 166 (535)
T ss_dssp ----------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSS---SCCEEEEECCTTTCTTC
T ss_pred ----------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCC---CCCEEEEEECCCccccc
Confidence 123457999999998632 233455666665432 25999999999987653
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.44 E-value=9.7e-13 Score=100.45 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIG 98 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 98 (170)
...++|+|+||||||||+++|++....... ....|.......+.+.....+.++|+||+.+...........+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~--- 231 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR--- 231 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH---
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH---
Confidence 456899999999999999999997542221 111222222333444223788999999997531111111122222
Q ss_pred hccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 99 LAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 99 ~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
...+++.+++++++. .-...+ ....+.+..+.......|.++|+||+|....
T Consensus 232 -~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 232 -HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp -HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred -HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 235679999999986 211112 2223333332111223689999999998754
No 188
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.44 E-value=1.5e-13 Score=94.65 Aligned_cols=121 Identities=22% Similarity=0.174 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCCceeEEEeeEEEEeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTITCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIV 94 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~ 94 (170)
...+|+++|.+|+|||||+|.+++... ........+.+. ......+ .+. .+.++||+|..... . .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~Dt~~~~~~~---~-----~- 72 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT--YERTLMV-DGESATIILLDMWENKGEN---E-----W- 72 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE--EEEEEEE-TTEEEEEEEECCCCC-------C-----T-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE--EEEEEEE-CCeEEEEEEEEeccCcchh---h-----h-
Confidence 347899999999999999999996322 111111111111 1122233 333 45789999976410 0 0
Q ss_pred HHHHhccCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 95 KCIGLAKGGIHAVLVVFSARNRFSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 95 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
....+...++++++|+++++.-+... ..++..+.+.... ...|+++|.||+|+...
T Consensus 73 -~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~ 129 (192)
T 2cjw_A 73 -LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRX 129 (192)
T ss_dssp -TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGG
T ss_pred -HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhcc
Confidence 01122344689999999974433222 2333344443211 12589999999998643
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.39 E-value=4e-12 Score=93.45 Aligned_cols=130 Identities=19% Similarity=0.157 Sum_probs=63.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC-ccccccCCC----CceeEEEeeEEEEe---eCCceEEEEeCCCCCCCCCC---
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR-KAFKASAGS----SGVTITCEMKTTVL---KDGQVVNVIDTPGLFDSSAG--- 85 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~-~~~~~~~~~----~~~t~~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~--- 85 (170)
.-...|+++|++|+|||||+|.|+|. ..+..+... ...+.......+.. .....+.++||+|+......
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 44578999999999999999999986 333333110 00111111111111 01346899999999532110
Q ss_pred chHHHH----HHHHHHHh---------ccCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCC
Q 046239 86 SEFVGK----EIVKCIGL---------AKGGIHAVLVVFSAR-NRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLE 151 (170)
Q Consensus 86 ~~~~~~----~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~ 151 (170)
-..... .+..++.. ...++++++|++++. ..++..+..+++.+. .. .++++|+||+|...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~~--~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----TT--SCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----hc--CCEEEEEEeCCCCC
Confidence 011111 11122211 123456677777764 358777754443332 22 38999999999886
Q ss_pred C
Q 046239 152 D 152 (170)
Q Consensus 152 ~ 152 (170)
.
T Consensus 170 ~ 170 (301)
T 2qnr_A 170 L 170 (301)
T ss_dssp H
T ss_pred H
Confidence 5
No 190
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.39 E-value=9.1e-13 Score=108.62 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=77.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc--------------CCCCceeEEEeeEEEEee---------------C
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTITCEMKTTVLK---------------D 67 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~ 67 (170)
....+|+++|..|+|||||+++|++....... ....+.|.........|. .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 34578999999999999999999864211000 011122333222333331 1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
+..+.||||||+.+|.. +.. .++..+|++++|+|+.++.+.++...+..+... . .|+++|+||+
T Consensus 97 ~~~i~liDTPG~~df~~-------~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~ 160 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSS-------EVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKV 160 (842)
T ss_dssp EEEEEEECCCCCCSSCH-------HHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECH
T ss_pred CceEEEEECcCchhhHH-------HHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECC
Confidence 45789999999998631 222 234567999999999988888876665544332 2 4899999999
Q ss_pred CCC
Q 046239 148 DYL 150 (170)
Q Consensus 148 D~~ 150 (170)
|..
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 976
No 191
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.38 E-value=1.8e-11 Score=99.35 Aligned_cols=121 Identities=26% Similarity=0.288 Sum_probs=83.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccc-------cc---------cCCCCceeEEEeeEEEEee------CCceEEEE
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAF-------KA---------SAGSSGVTITCEMKTTVLK------DGQVVNVI 74 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~-------~~---------~~~~~~~t~~~~~~~~~~~------~~~~~~l~ 74 (170)
.+-++|+|+|..++|||||..+|+-.... .. .....+.|+........|. ++..+.|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 45579999999999999999887522100 00 1223456666665666552 14579999
Q ss_pred eCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 75 DTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
||||+.+|. .+....++.+ |.+++|+|+.++...+....++...+. + -|.++++||+|....+
T Consensus 91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~--lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---G--VPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---T--CCEEEEEECSSSTTCC
T ss_pred eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---C--CCeEEEEccccccCcc
Confidence 999999863 3444444444 999999999999999998888887765 2 3899999999998763
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.35 E-value=1.5e-12 Score=104.46 Aligned_cols=118 Identities=20% Similarity=0.258 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCCHHHHHHHhh---CCccccc----cC---------CCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSIL---GRKAFKA----SA---------GSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~---~~~~~~~----~~---------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (170)
++|+|+|..++|||||..+|+ |...... +. ...+.|+......+.| ++..+.|+||||+.+|.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHHH
Confidence 689999999999999998875 3221111 10 0124555555556666 78889999999999852
Q ss_pred CCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh
Q 046239 84 AGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE 154 (170)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~ 154 (170)
.+.. +.+.-+|.+++|+|+.++...+....++...+. + -|.++++||+|....+.
T Consensus 82 -------~Ev~----raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~--lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 82 -------AEVY----RSLSVLDGAILLISAKDGVQAQTRILFHALRKM---G--IPTIFFINKIDQNGIDL 136 (638)
T ss_dssp -------HHHH----HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---T--CSCEECCEECCSSSCCS
T ss_pred -------HHHH----HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCeEEEEeccccccCCH
Confidence 2333 344566999999999999999998888887775 2 38899999999887643
No 193
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.33 E-value=7.5e-14 Score=105.28 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcccc-----ccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
+.+++++|.+|+|||||+|+|++..... .....++.|..... +.+ ...+.++||||+.+.....+....+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 4689999999999999999999863211 11122334433322 322 33489999999987643333233333
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCC
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDN 153 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~ 153 (170)
+.... ....++..++++++...........++.+.. .+ .|+++++||+|.+...
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~---~~--~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG---GR--RAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES---SS--EEEEEEECTTSCEEEE
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC---CC--ceEEEEecCccccccc
Confidence 32221 2456778888888742111111111222211 12 4899999999998663
No 194
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.32 E-value=6.1e-14 Score=105.81 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCc-----cccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRK-----AFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI 93 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 93 (170)
+.+++++|.+|+|||||+|+|++.. .... ...++.|..... +.+ ...+.++||||+.......+....+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 4679999999999999999999862 1111 122334443332 222 34589999999987643333222232
Q ss_pred HHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCCCh-hhHHHHhhh
Q 046239 94 VKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLEDNE-KTLEDYLGH 163 (170)
Q Consensus 94 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~~~-~~~~~~~~~ 163 (170)
+..+. ....++.+++++++...........++.+. ..+ .|+++++||.|.+...+ +...+++++
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~~~~~~~~~~~~~ 301 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHRTKLEKADSLYAN 301 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCcccccccHHHHHHHHHH
Confidence 22221 236678899999884211111111122121 112 48999999999875433 344444444
No 195
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.30 E-value=2.2e-11 Score=97.35 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=69.9
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEE-E-e------e------------------------------
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTIT-C-E------M------------------------------ 60 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~-~-~------~------------------------------ 60 (170)
+.++|+|++|||||||+++|+|...+ ..|.....+... . . .
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 34999999999999999999998755 344332221110 0 0 0
Q ss_pred -------------EEEEeeCCceEEEEeCCCCCCC--CCCchHHHHHHHHHHHhccCCc-cEEEEEEeCCCCCCHHHHHH
Q 046239 61 -------------KTTVLKDGQVVNVIDTPGLFDS--SAGSEFVGKEIVKCIGLAKGGI-HAVLVVFSARNRFSQEEEAA 124 (170)
Q Consensus 61 -------------~~~~~~~~~~~~l~DtpG~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~ 124 (170)
..........+.++|.||+... .........++...+..+.... .+++++.+.+..+. ....
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence 0011112346899999998752 2223334556666666644443 45566666542322 2223
Q ss_pred HHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 125 VHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 125 ~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
++.+...-..+ .++++|+||+|.+..
T Consensus 204 l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcC--CceEEEecchhhcCc
Confidence 44444432222 489999999999866
No 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=89.09 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=30.8
Q ss_pred CccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 103 GIHAVLVVFSARNR--FSQEE-EAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 103 ~~~~il~v~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
++|++++|+|++++ .+... ..++..+.+... ....|+++|.||+|+...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLA-KTKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHH-HTTCCEEEEEECGGGBCH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhc-cCCCCEEEEEEccccccc
Confidence 58999999999754 44443 234444443311 112599999999998654
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=9.7e-12 Score=93.18 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCCCCCCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTPGLFDS 82 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~ 82 (170)
+.+|+++|.+|+|||||+|+|++...... ..+.+|.......+.+.. ...+.++||||+..+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 36899999999999999999998652111 111223222222233311 146899999999864
Q ss_pred CCCchHHHHHHHHHHHhccCCccEEEEEEeCCC
Q 046239 83 SAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN 115 (170)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (170)
.......+.+++.. ...+|++++|+|+.+
T Consensus 80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLAN----IRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred ccccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence 21111122233332 356799999999864
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=91.82 Aligned_cols=26 Identities=27% Similarity=0.033 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....+|+|+|++|||||||+|.|++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999974
No 199
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.22 E-value=2.6e-11 Score=91.74 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=49.6
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeC----------------CceEEEEeCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKD----------------GQVVNVIDTP 77 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtp 77 (170)
.....+.+++++|++|+|||||+|+|++..... ...+.+|.......+.+.. ...+.++|||
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~--~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp 94 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASA--ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIA 94 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECC
Confidence 344567899999999999999999999875311 1122233333333332211 2358999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239 78 GLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (170)
|+..+.......+..+.. ....+|++++|+|+.
T Consensus 95 Gl~~~as~~~glg~~~l~----~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 95 GLVKGAHNGQGLGNAFLS----HISACDGIFHLTRAF 127 (396)
T ss_dssp C-----------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred CcccccchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence 998754322222223333 345679999999985
No 200
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.21 E-value=4.1e-11 Score=90.76 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=61.1
Q ss_pred CCCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCC-----------------ceEEEEe
Q 046239 13 TSPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDG-----------------QVVNVID 75 (170)
Q Consensus 13 ~~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~D 75 (170)
.....++.+++++|+||+|||||+|+|+|...... ...+.+|.......+.+ .+ ..+.++|
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD 91 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD 91 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence 34556678999999999999999999999653111 11222333333333333 22 3578999
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC
Q 046239 76 TPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 76 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 114 (170)
+||+.......+.....+... ...+|++++|+++.
T Consensus 92 ~pGl~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 92 IAGLTKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF 126 (392)
T ss_dssp TGGGCCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred ccccccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 999986544333333344433 34679999999975
No 201
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.18 E-value=2.7e-10 Score=86.86 Aligned_cols=119 Identities=21% Similarity=0.183 Sum_probs=72.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEE-EeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTIT-CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCI 97 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 97 (170)
...++++|+||+|||||+|+|+|...+..+....+.... .....++......+.++|+||+..... ...+++...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~----~~~~~L~~~ 144 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNF----PPDTYLEKM 144 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSC----CHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHH----HHHHHHHHc
Confidence 348999999999999999999998776666443332211 111222221224689999999874321 122333222
Q ss_pred HhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCC
Q 046239 98 GLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYL 150 (170)
Q Consensus 98 ~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~ 150 (170)
. ....+..++ ++.. ........+...+... + .|+++|.||.|.+
T Consensus 145 ~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~---~--~p~~lV~tkpdll 188 (413)
T 1tq4_A 145 K--FYEYDFFII-ISAT-RFKKNDIDIAKAISMM---K--KEFYFVRTKVDSD 188 (413)
T ss_dssp T--GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT---T--CEEEEEECCHHHH
T ss_pred C--CCccCCeEE-eCCC-CccHHHHHHHHHHHhc---C--CCeEEEEecCccc
Confidence 2 222344444 6665 3566666666666653 2 4999999999975
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.12 E-value=1.3e-11 Score=92.11 Aligned_cols=27 Identities=26% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++.+++++|+||||||||+|.|+|.
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 466789999999999999999999864
No 203
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.12 E-value=2.5e-10 Score=90.44 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=61.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccc-cccCCCCceeEEEeeEEEEe--eCCceEEEEeCCCCCCCCC-CchHHHHH
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTITCEMKTTVL--KDGQVVNVIDTPGLFDSSA-GSEFVGKE 92 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~DtpG~~~~~~-~~~~~~~~ 92 (170)
.+..+|+|+|++|+|||||+|.|+|.... ..+..+.+.|.....+.... ..+..+.++||||+.+... ... ....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~-~~~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQ-NDSW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCT-THHH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchh-HHHH
Confidence 34578999999999999999999997642 22222233443333322211 1467899999999987433 111 1112
Q ss_pred HHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 046239 93 IVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPT 130 (170)
Q Consensus 93 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~ 130 (170)
+....... . + ++|+++...++..+...+..+.+
T Consensus 115 ~fala~ll-s--s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 115 IFALAVLL-S--S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHH-C--S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHh-c--C--eEEEECCCCccHHHHHHHHHHHH
Confidence 21111111 1 2 34455555788887666555444
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.12 E-value=1.2e-10 Score=87.56 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEee--------------------CCceEEEEeCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLK--------------------DGQVVNVIDTPGL 79 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~l~DtpG~ 79 (170)
.+++++|.+|+|||||+|+|++...... ..+..|.........++ ....+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~--~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAA--NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCS--SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4689999999999999999998642111 11111221111111110 1346899999999
Q ss_pred CCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC
Q 046239 80 FDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN 115 (170)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 115 (170)
..+....+..+.++...+ ..+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 876543333444554443 45699999999863
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.12 E-value=1.9e-10 Score=85.94 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..+..+++++|++|+|||||+|.|++.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999753
No 206
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.09 E-value=1.5e-09 Score=84.76 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=69.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh------CCccccccC-C-CCce-------eEE--EeeEE-----------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL------GRKAFKASA-G-SSGV-------TIT--CEMKT----------------- 62 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~------~~~~~~~~~-~-~~~~-------t~~--~~~~~----------------- 62 (170)
.+..+|+++|++|+||||+++.|+ |....-... . .++. ... .....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 543211100 0 0000 000 00000
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce-EE
Q 046239 63 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY-MI 141 (170)
Q Consensus 63 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i 141 (170)
..+ .+..+.|+||||.... ......++...... ..+|.+++|+|+....+ ....++.+.+. .| ..
T Consensus 179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~g 244 (504)
T 2j37_W 179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVAS 244 (504)
T ss_dssp HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCC
T ss_pred HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceE
Confidence 001 4567999999999852 12233344333332 26799999999975543 23333333332 26 48
Q ss_pred EEEEcCCCCCC
Q 046239 142 VVFTGGDYLED 152 (170)
Q Consensus 142 vv~tk~D~~~~ 152 (170)
+|+||+|....
T Consensus 245 vVlNK~D~~~~ 255 (504)
T 2j37_W 245 VIVTKLDGHAK 255 (504)
T ss_dssp EEEECTTSCCC
T ss_pred EEEeCCccccc
Confidence 99999998754
No 207
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.07 E-value=2.8e-10 Score=85.43 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
....+|+++|++|+|||||++.|+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999864
No 208
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.06 E-value=1e-09 Score=78.71 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCCCCCCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 10 WKPTSPSIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
+..+........+++.|+.|+||||+++.|+
T Consensus 5 ~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 5 HHHHHHGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCCCTTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccccCCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 3344445566788999999999999999998
No 209
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.05 E-value=8.7e-10 Score=82.53 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 456789999999999999999999998876654
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=5.8e-10 Score=81.16 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=41.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCch
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE 87 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 87 (170)
....+++++|.+|+|||||+|+|+|......+. .++.|...+. +.. +..+.++||||+..+.....
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VKV--GKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EEE--TTTEEEEECCCCCCSCCCCH
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EEe--CCCEEEEECcCcCCCCCCCH
Confidence 345789999999999999999999876543332 2344444432 222 45789999999987654443
No 211
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.03 E-value=5e-10 Score=80.40 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 457789999999999999999999998765544
No 212
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.03 E-value=2.2e-11 Score=89.44 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 457789999999999999999999998765544
No 213
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.01 E-value=8.9e-10 Score=82.59 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 3467789999999999999999999998876544
No 214
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.01 E-value=2.6e-10 Score=82.34 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 456789999999999999999999998766554
No 215
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.00 E-value=9.2e-10 Score=82.97 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=28.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 456789999999999999999999998876554
No 216
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.00 E-value=5.1e-10 Score=79.41 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+||||||||||++.|+|...+..|
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 3567789999999999999999999998765544
No 217
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.00 E-value=2.6e-09 Score=76.57 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~ 47 (170)
..++..++|+|+||||||||++.|+|...+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 59 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 45678999999999999999999999876544
No 218
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.99 E-value=1.3e-10 Score=83.11 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 456789999999999999999999998765544
No 219
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.98 E-value=3.6e-09 Score=77.74 Aligned_cols=129 Identities=15% Similarity=0.035 Sum_probs=70.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---cee------------EEEeeEEEE-----------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVT------------ITCEMKTTV----------------- 64 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t------------~~~~~~~~~----------------- 64 (170)
.++..++++|+|||||||+++.|++...+..+.... ... .......+.
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 467899999999999999999998765433221000 000 000000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCc-hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 046239 65 -LKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV 142 (170)
Q Consensus 65 -~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (170)
...+....++||+|........ ...........+.....|+.+++++|+..+. .....+..+.+.. ...++
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~-----~~t~i 252 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-----GLTGV 252 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-----CCSEE
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHc-----CCcEE
Confidence 0012346799999986532111 1112222233334566788888899976332 2222333333322 36889
Q ss_pred EEEcCCCCCC
Q 046239 143 VFTGGDYLED 152 (170)
Q Consensus 143 v~tk~D~~~~ 152 (170)
++||.|....
T Consensus 253 ivTh~d~~a~ 262 (304)
T 1rj9_A 253 IVTKLDGTAK 262 (304)
T ss_dssp EEECTTSSCC
T ss_pred EEECCccccc
Confidence 9999997643
No 220
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.98 E-value=2.3e-09 Score=80.33 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 457789999999999999999999998776554
No 221
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.97 E-value=1.1e-08 Score=72.00 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 456789999999999999999999998765544
No 222
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.97 E-value=4.4e-09 Score=79.25 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 456789999999999999999999999876554
No 223
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.96 E-value=2.1e-09 Score=80.50 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 456789999999999999999999998876654
No 224
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.96 E-value=7.8e-10 Score=80.14 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=28.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 456789999999999999999999998765544
No 225
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.95 E-value=1.4e-09 Score=77.37 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=28.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 456789999999999999999999998765544
No 226
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.95 E-value=3.2e-10 Score=82.07 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 3567789999999999999999999998765544
No 227
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.94 E-value=2.9e-09 Score=79.89 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 457789999999999999999999998776554
No 228
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.94 E-value=1.5e-09 Score=78.24 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 457789999999999999999999998765544
No 229
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.94 E-value=2.6e-09 Score=79.90 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 456789999999999999999999998876554
No 230
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.93 E-value=1e-09 Score=78.09 Aligned_cols=31 Identities=35% Similarity=0.259 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
.+ ..++++|+||||||||++.|+|...+..|
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 45 78999999999999999999998765544
No 231
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.93 E-value=3.4e-09 Score=74.83 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 356789999999999999999999998765443
No 232
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.92 E-value=3.1e-09 Score=79.99 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 457789999999999999999999998876554
No 233
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.91 E-value=1.8e-09 Score=85.99 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..++..++++|+||||||||++.|+|...+..|.
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 4577899999999999999999999988766553
No 234
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.90 E-value=1.4e-08 Score=72.14 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=28.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 457789999999999999999999998765544
No 235
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.87 E-value=8.4e-09 Score=72.06 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=28.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 356788999999999999999999998765544
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.87 E-value=5.5e-09 Score=80.99 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---ceeE------------EEeeEEE-E--------------
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTI------------TCEMKTT-V-------------- 64 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t~------------~~~~~~~-~-------------- 64 (170)
...++.+++|+|+||||||||++.|+|......+.... .... ...+..+ .
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l 368 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAI 368 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHH
Confidence 45678899999999999999999998865433321110 0000 0000000 0
Q ss_pred ---eeCCceEEEEeCCCCCCCCCCchHHHHHHHH---HHHhc-cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc
Q 046239 65 ---LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK---CIGLA-KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF 137 (170)
Q Consensus 65 ---~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (170)
...+..+.++||+|.... ......++.+ .++.. ...++-+++++|+..+ ......++.+.+.+
T Consensus 369 ~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~----- 438 (503)
T 2yhs_A 369 QAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAV----- 438 (503)
T ss_dssp HHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHT-----
T ss_pred HHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhc-----
Confidence 012345889999999752 1222233332 22222 2346788889997533 22223333343332
Q ss_pred ceEEEEEEcCCCCCC
Q 046239 138 DYMIVVFTGGDYLED 152 (170)
Q Consensus 138 ~~~ivv~tk~D~~~~ 152 (170)
....+|+||.|....
T Consensus 439 ~itgvIlTKLD~tak 453 (503)
T 2yhs_A 439 GLTGITLTKLDGTAK 453 (503)
T ss_dssp CCSEEEEECGGGCSC
T ss_pred CCCEEEEEcCCCccc
Confidence 356789999997433
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.86 E-value=1.1e-09 Score=78.13 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3567889999999999999999999998766554
No 238
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.86 E-value=3.9e-09 Score=78.84 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+||||||||||++.|+|...+..|
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 456789999999999999999999998876554
No 239
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.86 E-value=6.5e-10 Score=88.76 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|+||||||||++.|+|...+..|
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 567889999999999999999999998876554
No 240
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.86 E-value=2.7e-09 Score=76.76 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
...++..++|+|+||||||||++.|+|...+
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3457789999999999999999999998653
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.85 E-value=2.5e-09 Score=76.99 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 84 (170)
.+++++|.+|+|||||+|+|++......+. .++.|...+ .+. -...+.++||||+..+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~--~~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQ--WFS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC--EEE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceE--EEE--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999876543322 223443332 222 245789999999997654
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.85 E-value=5.1e-09 Score=77.70 Aligned_cols=124 Identities=17% Similarity=0.091 Sum_probs=69.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeE---------------EEeeEEEE-----------------
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTI---------------TCEMKTTV----------------- 64 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~---------------~~~~~~~~----------------- 64 (170)
.++..++++|+|||||||+++.|++...+..+........ ......+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 5678999999999999999999998654433311100000 00000000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEE
Q 046239 65 -LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVV 143 (170)
Q Consensus 65 -~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (170)
...+..+.++||+|..... .....++....+.. .+|-.++++|+... . ..++.+..+... ....+++
T Consensus 207 ~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~---~--~~~~~~~~~~~~--~~it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAG---N--AIVEQARQFNEA--VKIDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGT---T--HHHHHHHHHHHH--SCCCEEE
T ss_pred HHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHH---H--HHHHHHHHHHHh--cCCCEEE
Confidence 0013456789999986532 22334444433333 36778888887533 1 233333332211 1367899
Q ss_pred EEcCCCCCC
Q 046239 144 FTGGDYLED 152 (170)
Q Consensus 144 ~tk~D~~~~ 152 (170)
+||.|....
T Consensus 275 lTKlD~~a~ 283 (328)
T 3e70_C 275 LTKLDADAR 283 (328)
T ss_dssp EECGGGCSC
T ss_pred EeCcCCccc
Confidence 999997443
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.84 E-value=2.1e-08 Score=73.61 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=70.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCC---Ccee----------------EEEeeEEEE--e---------
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---SGVT----------------ITCEMKTTV--L--------- 65 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~---~~~t----------------~~~~~~~~~--~--------- 65 (170)
..++..++++|+|||||||+++.|+|...+..+... .... ......... .
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l 176 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAV 176 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHH
Confidence 556789999999999999999999986544332110 0000 000000000 0
Q ss_pred ----eCCceEEEEeCCCCCCCCCCc-hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceE
Q 046239 66 ----KDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYM 140 (170)
Q Consensus 66 ----~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (170)
..+....++|+.|........ .+...+....++.....++-+++++|+..+.+... .+..+.+.. ...
T Consensus 177 ~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-----g~t 249 (302)
T 3b9q_A 177 KRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----GIT 249 (302)
T ss_dssp HHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----CCC
T ss_pred HHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-----CCC
Confidence 012346789999997532111 11122233333345567887777777653443322 223332221 357
Q ss_pred EEEEEcCCCCCC
Q 046239 141 IVVFTGGDYLED 152 (170)
Q Consensus 141 ivv~tk~D~~~~ 152 (170)
++++||.|....
T Consensus 250 ~iiiThlD~~~~ 261 (302)
T 3b9q_A 250 GLILTKLDGSAR 261 (302)
T ss_dssp EEEEECCSSCSC
T ss_pred EEEEeCCCCCCc
Confidence 889999987644
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.84 E-value=3.1e-08 Score=74.25 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC---ceeE------------EEeeEEEE-e-------------
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS---GVTI------------TCEMKTTV-L------------- 65 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~---~~t~------------~~~~~~~~-~------------- 65 (170)
...++.+++++|+|||||||+++.|+|...+..+.... .... ......+. .
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 34577899999999999999999999865433321100 0000 00000000 0
Q ss_pred -----eCCceEEEEeCCCCCCCCCCc-hHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccce
Q 046239 66 -----KDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDY 139 (170)
Q Consensus 66 -----~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (170)
..+....++||.|........ .+...+.....+.....++-+++++|+..+.+... .+..+.+.. ..
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-----g~ 305 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-----GI 305 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-----CC
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-----CC
Confidence 012346789999997532111 11122333333445677887777888653433322 222232221 36
Q ss_pred EEEEEEcCCCCCC
Q 046239 140 MIVVFTGGDYLED 152 (170)
Q Consensus 140 ~ivv~tk~D~~~~ 152 (170)
.++++||.|....
T Consensus 306 t~iiiThlD~~~~ 318 (359)
T 2og2_A 306 TGLILTKLDGSAR 318 (359)
T ss_dssp CEEEEESCTTCSC
T ss_pred eEEEEecCccccc
Confidence 7899999987644
No 245
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.83 E-value=1.5e-09 Score=77.62 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
..++..++|+|+||||||||++.|+|...+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 3567899999999999999999999987655
No 246
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.83 E-value=1.6e-09 Score=86.15 Aligned_cols=33 Identities=27% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++||||||||||++.|+|...+..|
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 457789999999999999999999998776554
No 247
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.83 E-value=6.5e-10 Score=88.56 Aligned_cols=33 Identities=30% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|+||||||||++.|+|...+..|
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 456789999999999999999999998776554
No 248
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.79 E-value=2.3e-08 Score=76.73 Aligned_cols=123 Identities=13% Similarity=0.100 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC------Ccccccc-CCC-C-------------ceeEEEeeEEEE----------e-
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG------RKAFKAS-AGS-S-------------GVTITCEMKTTV----------L- 65 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~------~~~~~~~-~~~-~-------------~~t~~~~~~~~~----------~- 65 (170)
++.+|+++|++|+||||++..|+. ....-.. ... . +..........+ .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998873 2210000 000 0 000000000000 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 66 -KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
..+..+.|+||||.... ......++...... ..+|.+++|+|+..+. ........+.+.+ ....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~--~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISNV--IHPHEVILVIDGTIGQ--QAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHH--HCCSEEEEEEEGGGGG--GHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHHh--hcCceEEEEEeCCCch--hHHHHHHHHHhhC-----CCeEEEE
Confidence 02367899999998752 23344444444333 2578999999986432 2223333333322 4678999
Q ss_pred EcCCCCCC
Q 046239 145 TGGDYLED 152 (170)
Q Consensus 145 tk~D~~~~ 152 (170)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99998755
No 249
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.79 E-value=5.3e-09 Score=75.34 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
+..++|+|+||||||||++.|+|.. +..|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 7899999999999999999999987 6554
No 250
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.78 E-value=2.3e-08 Score=73.00 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=28.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 456789999999999999999999998765544
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.78 E-value=6.8e-08 Score=69.50 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 3457789999999999999999999998765544
No 252
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.75 E-value=1.8e-09 Score=85.96 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|+||||||||++.|+|...+..|
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 356789999999999999999999998765554
No 253
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=2.7e-09 Score=78.35 Aligned_cols=62 Identities=27% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC------ceeEEEeeEEEEeeCCceEEEEeCCCCCCCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTITCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~ 83 (170)
.++.+++++|+||+|||||+|+|+|...+..+.... ..|.... .... . ..+++||||+..+.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~-~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT-S--GGLVADTPGFSSLE 238 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE-T--TEEEESSCSCSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc-C--CEEEecCCCccccc
Confidence 356799999999999999999999987655553331 2222111 1222 1 56899999998753
No 254
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.75 E-value=2.2e-08 Score=76.77 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=69.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc-------CCC--------------CceeEEEe-------------eEE
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS-------AGS--------------SGVTITCE-------------MKT 62 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-------~~~--------------~~~t~~~~-------------~~~ 62 (170)
.++.+|+++|++|+||||++..|+........ ... .+...... ...
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 35689999999999999999988732211100 000 00000000 000
Q ss_pred EEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 046239 63 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV 142 (170)
Q Consensus 63 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (170)
... .+..+.++||||....... .....++....... .++.+++|+|+... .......+.+.+.+ .+..+
T Consensus 175 a~~-~~~DvvIIDTaGr~~~~~d-~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gV 243 (433)
T 3kl4_A 175 FVK-NKMDIIIVDTAGRHGYGEE-TKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSV 243 (433)
T ss_dssp TTT-TTCSEEEEEECCCSSSCCT-THHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEE
T ss_pred HHh-cCCCEEEEECCCCccccCC-HHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEE
Confidence 000 2467889999997541111 23445555544433 46889999998633 22233344444332 47889
Q ss_pred EEEcCCCCCC
Q 046239 143 VFTGGDYLED 152 (170)
Q Consensus 143 v~tk~D~~~~ 152 (170)
|+||+|....
T Consensus 244 IlTKlD~~a~ 253 (433)
T 3kl4_A 244 IITKMDGTAK 253 (433)
T ss_dssp EEECGGGCSC
T ss_pred EEeccccccc
Confidence 9999997644
No 255
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.72 E-value=1.1e-09 Score=83.04 Aligned_cols=29 Identities=38% Similarity=0.381 Sum_probs=26.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
..++..++|+||||||||||++.|+|...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 46778999999999999999999999875
No 256
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.71 E-value=3e-09 Score=91.55 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.+++.+++++|+||||||||++.|+|...+..|.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 4578899999999999999999999988766553
No 257
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.69 E-value=7.2e-08 Score=71.69 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=53.6
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-------C-CCHHHHHHHHHHHHH
Q 046239 60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-------R-FSQEEEAAVHRLPTL 131 (170)
Q Consensus 60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~-~~~~~~~~~~~l~~~ 131 (170)
...+.. .+..+.+|||.|.. .++..+..++.+++++|+|+|+++ . -...-...+.++.+.
T Consensus 153 ~~~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 153 EYDFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp EEEEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred EEEEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 344444 56789999999985 466777788999999999999861 0 011112334444444
Q ss_pred hccc--ccceEEEEEEcCCCCCC
Q 046239 132 FGKK--IFDYMIVVFTGGDYLED 152 (170)
Q Consensus 132 ~~~~--~~~~~ivv~tk~D~~~~ 152 (170)
.... ...|++++.||+|+...
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHH
T ss_pred hhhhccCCCeEEEEEECchhhhh
Confidence 3221 22489999999997653
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.67 E-value=3.9e-08 Score=72.19 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC----ceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----GVTITCEMKTTVLKDGQVVNVIDTPGLFDS 82 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (170)
.+..++++|+||+|||||+|+|+ ...+..|.... +............ ....+++|+||+..+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~--~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF--GKGSFVGDTPGFSKV 229 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE--TTTEEEESSCCCSSC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc--CCCcEEEECcCcCcC
Confidence 35789999999999999999999 76655554332 2111111111211 246789999998743
No 259
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.67 E-value=8.3e-08 Score=65.14 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhCCc
Q 046239 21 TVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
+++++|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 260
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.67 E-value=1.2e-08 Score=81.46 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=28.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|+||||||||++.|+|...+..|
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 356788999999999999999999998765554
No 261
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.66 E-value=1.5e-08 Score=77.89 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccccc-------C-C--------------------CCc-eeEEE-ee--EEEEe
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------A-G--------------------SSG-VTITC-EM--KTTVL 65 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~-------~-~--------------------~~~-~t~~~-~~--~~~~~ 65 (170)
+..+|+++|++|+||||+++.|.+.....+. . . ..+ .+... .. .....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998863210000 0 0 000 00000 00 00000
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhccccc-ceEEEEE
Q 046239 66 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIF-DYMIVVF 144 (170)
Q Consensus 66 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv~ 144 (170)
..+..+.++||||.... ......++.. + .....+|.+++|+++..+. . .+..... +... . ....+|+
T Consensus 178 ~~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVl 245 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIV 245 (432)
T ss_dssp TSSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEE
T ss_pred hhCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEE
Confidence 13557899999998752 1222233322 1 1234689999999986442 1 2222222 2111 1 2489999
Q ss_pred EcCCCCCC
Q 046239 145 TGGDYLED 152 (170)
Q Consensus 145 tk~D~~~~ 152 (170)
||+|....
T Consensus 246 nK~D~~~~ 253 (432)
T 2v3c_C 246 TKLDGSAK 253 (432)
T ss_dssp ECSSSCST
T ss_pred eCCCCccc
Confidence 99998644
No 262
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.65 E-value=3.1e-09 Score=91.49 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=28.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|++|||||||++.|+|...+..|
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 356788999999999999999999998876655
No 263
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.65 E-value=6.2e-09 Score=89.46 Aligned_cols=33 Identities=27% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++++|+||||||||++.|+|...+..|
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 456789999999999999999999998766544
No 264
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.63 E-value=1.7e-07 Score=69.41 Aligned_cols=80 Identities=11% Similarity=0.072 Sum_probs=52.9
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCC-------CCCC-HHHHHHHHHHHHH
Q 046239 60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSAR-------NRFS-QEEEAAVHRLPTL 131 (170)
Q Consensus 60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~-~~~~~~~~~l~~~ 131 (170)
...+.. .+..+.+|||.|.. .++..+..++.+++++++|++++ +.-+ ..-...+.++.+.
T Consensus 159 ~~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 159 EYPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 344555 56789999999986 45666667889999999999764 1111 1122344455554
Q ss_pred hccc--ccceEEEEEEcCCCCC
Q 046239 132 FGKK--IFDYMIVVFTGGDYLE 151 (170)
Q Consensus 132 ~~~~--~~~~~ivv~tk~D~~~ 151 (170)
.... ...|++++.||+|+.+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHH
T ss_pred hhhhccCCceEEEEEECchhhh
Confidence 4322 2248999999999764
No 265
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=3.1e-08 Score=72.71 Aligned_cols=63 Identities=25% Similarity=0.215 Sum_probs=38.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCC----ceeEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----GVTITCEMKTTVLKDGQVVNVIDTPGLFDS 82 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (170)
.+..++++|+||+|||||+|+|+|...+..|.... +........... .....+++|+||+..+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE--CTTSCEEESSCSSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEE--cCCCCEEEECcCCCcc
Confidence 35689999999999999999999988766554332 111111111121 2346789999998653
No 266
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.62 E-value=3.4e-08 Score=68.87 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...+|+++|++|+|||||++.|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999864
No 267
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.57 E-value=1.3e-07 Score=70.91 Aligned_cols=78 Identities=10% Similarity=0.086 Sum_probs=51.2
Q ss_pred EEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHHh
Q 046239 61 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF--------SQEEEAAVHRLPTLF 132 (170)
Q Consensus 61 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~~l~~~~ 132 (170)
..+.+ ....+.+|||+|... +...+..+..+++++|+|+++++.- ...-.....++.+..
T Consensus 186 ~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 186 THFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred EEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34444 567899999999874 3344556788999999999997421 111223344444444
Q ss_pred ccc--ccceEEEEEEcCCCC
Q 046239 133 GKK--IFDYMIVVFTGGDYL 150 (170)
Q Consensus 133 ~~~--~~~~~ivv~tk~D~~ 150 (170)
... ...|++++.||+|+.
T Consensus 254 ~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHH
T ss_pred cCccccCCcEEEEEECcCch
Confidence 321 224999999999975
No 268
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.57 E-value=1.3e-06 Score=69.85 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
.++.+++|+|+||||||||++.|+|...+..|..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 4678999999999999999999999877666543
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.55 E-value=2.2e-08 Score=67.53 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
.++..++++|+||||||||++.+.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc
Confidence 467889999999999999999533
No 270
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.55 E-value=1.3e-06 Score=68.88 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
.++.+++|+|+||||||||++.|+|...+..|.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 324 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITADEGS 324 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 467889999999999999999999987766553
No 271
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.54 E-value=1.8e-06 Score=68.09 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
.++.+++|+|+||||||||++.|+|...+..|..
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i 343 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4678999999999999999999999887665543
No 272
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.2e-06 Score=69.97 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
+.+++|+|+||||||||++.|+|...+..|.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 3678999999999999999999998776653
No 273
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.53 E-value=4.2e-08 Score=73.41 Aligned_cols=62 Identities=29% Similarity=0.396 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcc-ccccCCCC--c--e-eEEEeeEEEEeeCCceEEEEeCCCCCCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSS--G--V-TITCEMKTTVLKDGQVVNVIDTPGLFDS 82 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~-~~~~~~~~--~--~-t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 82 (170)
++..++++|+||+|||||+|.|+|... +..+.... + . ++. ....... .....++|+||+.++
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~-~~~i~~v--~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT-AARLYHF--PHGGDVIDSPGVREF 281 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C-CCEEEEC--TTSCEEEECHHHHTC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE-EEEEEEE--CCCCEecCcccHHHh
Confidence 456899999999999999999999876 55543221 1 0 111 1111222 223467999998664
No 274
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.49 E-value=4.3e-07 Score=67.47 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
++..++++|+||||||||+++|+|...+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g 200 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEER 200 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4568999999999999999999998765433
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.49 E-value=1.6e-07 Score=69.03 Aligned_cols=127 Identities=14% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-------CCcee--------EEEeeEEEE----------------
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVT--------ITCEMKTTV---------------- 64 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-------~~~~t--------~~~~~~~~~---------------- 64 (170)
..++..|+++|++|+||||++..|++......+.. ..... .......+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 35567999999999999999999886543222110 00000 000000000
Q ss_pred --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhc----cCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccc
Q 046239 65 --LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLA----KGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFD 138 (170)
Q Consensus 65 --~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (170)
...+..+.++||||... .......++....... ...++.+++|+++. +.. ..++....+.. . ..
T Consensus 181 ~a~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~~--~~l~~a~~~~~-~-~~ 250 (306)
T 1vma_A 181 HALARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TGQ--NGLVQAKIFKE-A-VN 250 (306)
T ss_dssp HHHHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GHH--HHHHHHHHHHH-H-SC
T ss_pred HHHhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CCH--HHHHHHHHHHh-c-CC
Confidence 01345689999999643 2233333443333222 24578889999875 222 22233322221 1 13
Q ss_pred eEEEEEEcCCCCCC
Q 046239 139 YMIVVFTGGDYLED 152 (170)
Q Consensus 139 ~~ivv~tk~D~~~~ 152 (170)
..-+|+||.|....
T Consensus 251 i~gvVlTk~D~~~~ 264 (306)
T 1vma_A 251 VTGIILTKLDGTAK 264 (306)
T ss_dssp CCEEEEECGGGCSC
T ss_pred CCEEEEeCCCCccc
Confidence 56788899997544
No 276
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.49 E-value=7.6e-07 Score=68.51 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+-..|+|+|++++|||||+|.|+|.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34467999999999999999999864
No 277
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.48 E-value=1e-07 Score=82.03 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++.+++++|+||||||||++.|+|...+..|
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 467789999999999999999999998776554
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.47 E-value=9.4e-08 Score=68.60 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3457789999999999999999999998765544
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.44 E-value=1.3e-07 Score=68.18 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
...++..++|+|+||||||||++.|+|...+..|
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 3567789999999999999999999998765544
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.43 E-value=1.3e-07 Score=68.67 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=28.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++..++|+|+||||||||++.|+|...+..|
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 456789999999999999999999998766544
No 281
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.43 E-value=4e-07 Score=66.61 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=65.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-------CCceeEE-----------EeeEE----------E-EeeC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVTIT-----------CEMKT----------T-VLKD 67 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-------~~~~t~~-----------~~~~~----------~-~~~~ 67 (170)
.++.+++++|++|+||||++..|++......|.. ....... ..... . .. .
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~ 181 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S 181 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c
Confidence 4567999999999999999999876543211210 0000000 00000 0 01 3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
+..+.|+||||.... ......++...+. ...++.+++|+++... .. .+..+.+.+.. ....-+|+||.
T Consensus 182 ~~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~---~~~~~~~~~~~--l~~~giVltk~ 249 (296)
T 2px0_A 182 EYDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YE---DMKHIVKRFSS--VPVNQYIFTKI 249 (296)
T ss_dssp GSSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HH---HHHHHTTTTSS--SCCCEEEEECT
T ss_pred CCCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HH---HHHHHHHHHhc--CCCCEEEEeCC
Confidence 457899999999752 1222223332211 1246778888887632 11 22233333321 13456778999
Q ss_pred CCCCC
Q 046239 148 DYLED 152 (170)
Q Consensus 148 D~~~~ 152 (170)
|....
T Consensus 250 D~~~~ 254 (296)
T 2px0_A 250 DETTS 254 (296)
T ss_dssp TTCSC
T ss_pred Ccccc
Confidence 97654
No 282
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.42 E-value=1.9e-06 Score=63.03 Aligned_cols=123 Identities=16% Similarity=0.131 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcccccc------CC--CCc-------------eeEEEe-------------eEEEE
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS------AG--SSG-------------VTITCE-------------MKTTV 64 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~~------~~--~~~-------------~t~~~~-------------~~~~~ 64 (170)
+..++++|++|+||||++..|++......+ .. .+. ...... .....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999988743221111 00 000 000000 00000
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 65 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 65 ~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
. .+..+.++||||..... ..+....++..+... ..+|.+++|+++... ......++.+.+ . .....+|+
T Consensus 178 ~-~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~~~~~~~~~~~~----~-~~i~gvVl 246 (297)
T 1j8m_F 178 S-EKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDASIG--QKAYDLASKFNQ----A-SKIGTIII 246 (297)
T ss_dssp H-TTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHH----T-CTTEEEEE
T ss_pred h-CCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--HHHHHHHHHHHh----h-CCCCEEEE
Confidence 0 34578999999987511 112233333322222 257889999998632 122222332222 1 12378899
Q ss_pred EcCCCCCC
Q 046239 145 TGGDYLED 152 (170)
Q Consensus 145 tk~D~~~~ 152 (170)
||+|....
T Consensus 247 nk~D~~~~ 254 (297)
T 1j8m_F 247 TKMDGTAK 254 (297)
T ss_dssp ECGGGCTT
T ss_pred eCCCCCcc
Confidence 99997643
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.40 E-value=1.8e-07 Score=62.21 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
..++..++++|++|||||||++.|+|.. +..+.
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 3567899999999999999999999987 54443
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.36 E-value=2.5e-07 Score=66.12 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..++|+|+||||||||++.|+|.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999999997
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.35 E-value=2e-07 Score=64.65 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
+..++..++|+||||||||||++.|+|..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55678899999999999999999999865
No 286
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.34 E-value=3.1e-07 Score=66.21 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..++|+|+||||||||++.|+|.
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 457789999999999999999999997
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.31 E-value=2.7e-06 Score=63.80 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
.++..++++||||||||||+++|+|...+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 355689999999999999999999876543
No 288
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.31 E-value=1.2e-06 Score=64.74 Aligned_cols=127 Identities=19% Similarity=0.138 Sum_probs=67.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC-------CCCce-----eE------EEeeEEE--------------
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASA-------GSSGV-----TI------TCEMKTT-------------- 63 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-------~~~~~-----t~------~~~~~~~-------------- 63 (170)
..++..|+++|++|+||||++..|++......+. ..... .. .....-+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 4567899999999999999998887643221110 00000 00 0000000
Q ss_pred ---E--eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHh----ccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Q 046239 64 ---V--LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGL----AKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGK 134 (170)
Q Consensus 64 ---~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~ 134 (170)
. ...+..++|+||||.... .+....++...... ....+|.+++|+++... . ..++....+. +
T Consensus 182 ~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~~~~~~~-~ 252 (320)
T 1zu4_A 182 DAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVIQAEEFS-K 252 (320)
T ss_dssp HHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHHHHHHHT-T
T ss_pred HHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHHHHHHHh-h
Confidence 0 013457899999998752 11222233222111 12347888999998622 2 2333344332 2
Q ss_pred cccceEEEEEEcCCCCCC
Q 046239 135 KIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 135 ~~~~~~ivv~tk~D~~~~ 152 (170)
. ....-+|+||.|.-..
T Consensus 253 ~-~~i~GvVltk~d~~~~ 269 (320)
T 1zu4_A 253 V-ADVSGIILTKMDSTSK 269 (320)
T ss_dssp T-SCCCEEEEECGGGCSC
T ss_pred c-CCCcEEEEeCCCCCCc
Confidence 2 1345688999996543
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.30 E-value=1.8e-07 Score=64.98 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
.++..++|+|+||||||||++.|+|. .+..|..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 35678999999999999999999999 7666554
No 290
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.28 E-value=2.8e-07 Score=63.48 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
++..++|+||||||||||++.|++..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999853
No 291
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.28 E-value=4e-07 Score=63.79 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
...++..++|+||||||||||++.|+|...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345678999999999999999999998764
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.26 E-value=4.8e-07 Score=62.24 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.++..++|+||||||||||++.|++..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 356789999999999999999999864
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.26 E-value=3.5e-07 Score=62.33 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
..++|+||||||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999998654
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.24 E-value=4.4e-07 Score=63.46 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
...++..++|+||||||||||++.|+|..
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34567899999999999999999999865
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.24 E-value=2.1e-05 Score=60.41 Aligned_cols=124 Identities=19% Similarity=0.111 Sum_probs=65.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh-------CCcccccc--CCCCce-------eEE--EeeEE--------------E-
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL-------GRKAFKAS--AGSSGV-------TIT--CEMKT--------------T- 63 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~-------~~~~~~~~--~~~~~~-------t~~--~~~~~--------------~- 63 (170)
.+..+|+++|++|+||||+...|+ |....-.. ...... ... ..... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 456789999999999999998887 33211000 000000 000 00000 0
Q ss_pred Eee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEE
Q 046239 64 VLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIV 142 (170)
Q Consensus 64 ~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (170)
... .+..+.|+||||..... .....++.... ....++.+++|+++....+ ....++.+.. .. ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~--~~~~p~~vllVvda~~g~~--~~~~~~~f~~----~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVH--ASINPVETLFVVDAMTGQD--AANTAKAFNE----AL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHH--HHSCCSEEEEEEETTBCTT--HHHHHHHHHH----HS-CCCCE
T ss_pred HHHhCCCCEEEEECCCccccc---HHHHHHHHHHH--HhhcCcceeEEeecchhHH--HHHHHHHHhc----cC-CCeEE
Confidence 000 34579999999987531 22333333222 1336788999999864422 2222222222 11 23567
Q ss_pred EEEcCCCCCC
Q 046239 143 VFTGGDYLED 152 (170)
Q Consensus 143 v~tk~D~~~~ 152 (170)
|+||+|.-..
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 9999997543
No 296
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.22 E-value=6.6e-07 Score=60.63 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.+..++|+||||||||||++.|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998754
No 297
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.21 E-value=1.1e-06 Score=69.39 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
....++.+++|+|+||||||||++.|+|...+..|.
T Consensus 20 ~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 20 PTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp CCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 445678899999999999999999999987766553
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.21 E-value=2e-06 Score=65.83 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccC-------CCCcee----------EEEeeEE--------------EE-e
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA-------GSSGVT----------ITCEMKT--------------TV-L 65 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~-------~~~~~t----------~~~~~~~--------------~~-~ 65 (170)
++.+|+++|++|+||||++..|++......+. ...+.. ....... .. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 66789999999999999998887543221110 000000 0000000 00 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 66 -KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
..+..+.|+||||.... ......++....... .++.+++|+++... ......++.+.+.+ ....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 13456899999998753 122333443333322 57888999998632 11122222222211 3467899
Q ss_pred EcCCCCCC
Q 046239 145 TGGDYLED 152 (170)
Q Consensus 145 tk~D~~~~ 152 (170)
||.|.-..
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99996543
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.21 E-value=9.6e-07 Score=60.09 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...++..++|+|+|||||||+++.|++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456789999999999999999999986
No 300
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.21 E-value=6.7e-07 Score=61.97 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
..++..++|+|+||||||||++.|++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46778999999999999999999988654
No 301
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.17 E-value=1.3e-06 Score=69.03 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++.+++|+|+||||||||++.|+|...+..|.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 45788999999999999999999999987665544
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.17 E-value=5.3e-07 Score=63.46 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=18.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhh-CCc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSIL-GRK 43 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~-~~~ 43 (170)
..++..++|+|||||||||+++.|+ +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4567899999999999999999999 764
No 303
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.6e-06 Score=69.21 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~ 50 (170)
...++..++|+||||+|||||++.|+|...+..|..
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 456789999999999999999999999987766543
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.16 E-value=6.5e-07 Score=64.36 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
..++..++++||||||||||++.|+|...+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 4677899999999999999999999976543
No 305
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.12 E-value=1.4e-06 Score=63.84 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
...++..++|+||||||||||++.|+|..
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34677899999999999999999999764
No 306
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.12 E-value=3.9e-05 Score=64.13 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHh
Q 046239 17 IGERTVVLLGRTGNGKSATGNSI 39 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l 39 (170)
.++..++|+||||+||||+++.+
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 45678999999999999999998
No 307
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.12 E-value=5.8e-05 Score=58.04 Aligned_cols=126 Identities=18% Similarity=0.155 Sum_probs=65.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC-----------------ccccccCCCCceeEEEeeEE----EEeeCC--ceEEE
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR-----------------KAFKASAGSSGVTITCEMKT----TVLKDG--QVVNV 73 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l 73 (170)
.+-.+|+|+|+.++|||+|+|.|++. ..+..+....+.|....++. ...+.+ ..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 34567889999999999999976521 12222223334555444432 111122 45999
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hcc----cccceEEEEEEc
Q 046239 74 IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTL---FGK----KIFDYMIVVFTG 146 (170)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~ivv~tk 146 (170)
+||.|+.+.....+ .-..+..... . -..++||-.. ..++..+.+.+..+.++ ... .....++.++--
T Consensus 145 lDTEG~~d~~~~~~-~d~~ifaLa~-L--LSS~~IyN~~--~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvRD 218 (457)
T 4ido_A 145 MDTQGTFDSQSTLR-DSATVFALST-M--ISSIQVYNLS--QNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRD 218 (457)
T ss_dssp EEECCBTCTTCCHH-HHHHHHHHHH-H--HCSEEEEEEE--SSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEEET
T ss_pred EeccCCCCcccCcc-ccHHHHHHHH-H--Hhhheeeccc--ccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEEec
Confidence 99999987544321 1111111111 1 1244555443 25666665555554443 221 112255666665
Q ss_pred CC
Q 046239 147 GD 148 (170)
Q Consensus 147 ~D 148 (170)
+-
T Consensus 219 f~ 220 (457)
T 4ido_A 219 WS 220 (457)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.11 E-value=1.2e-06 Score=60.60 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.++..|+|+|++|||||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999885
No 309
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.11 E-value=2e-06 Score=68.77 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccccccC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~ 49 (170)
...++.+++|+|+||||||||++.|+|...+..|.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 45788999999999999999999999987766554
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.08 E-value=1.9e-06 Score=63.45 Aligned_cols=30 Identities=20% Similarity=0.071 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
..++..++|+|+||||||||++.|+|...+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 567889999999999999999999986543
No 311
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.08 E-value=2.1e-06 Score=64.56 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
++..++|+|+||||||||+++|++...+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 5678999999999999999999998765443
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.06 E-value=2.1e-06 Score=59.08 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...++..|+|+|++||||||+++.|.+.
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999998753
No 313
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=2.7e-06 Score=58.95 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
.++..|+|+||+||||||+++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999987653
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.04 E-value=1.9e-06 Score=58.90 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
.+++++|+||+|||||++.|+|... ..|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 5789999999999999999999765 444
No 315
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.04 E-value=2.7e-06 Score=58.48 Aligned_cols=29 Identities=34% Similarity=0.595 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
+..++..|+|+||+|+|||||++.|++..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 44567889999999999999999998754
No 316
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.04 E-value=2.8e-06 Score=60.31 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHhh---CCcccc
Q 046239 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFK 46 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~---~~~~~~ 46 (170)
+..|+|+|++||||||+++.|+ |...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 5789999999999999999999 876543
No 317
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.6e-06 Score=67.08 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
.++.+++|+|+||||||||++.|+|...+..|
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 46789999999999999999999998765544
No 318
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.03 E-value=4.2e-05 Score=62.70 Aligned_cols=26 Identities=19% Similarity=0.065 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
+..++|+||||+|||||++.++|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 67899999999999999999998653
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.02 E-value=3.3e-06 Score=60.26 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh---CCccccc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL---GRKAFKA 47 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~---~~~~~~~ 47 (170)
.++.+|+|+|++||||||+.+.|. |...+..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 456799999999999999999999 8765443
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.01 E-value=3.2e-06 Score=58.09 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.++..|+|+|++||||||+++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998865
No 321
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.00 E-value=3.2e-06 Score=60.03 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...++..|+|+|++|||||||++.|++.
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4556789999999999999999999874
No 322
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.95 E-value=5e-05 Score=63.30 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..++|+||||+|||||++.+.+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 455789999999999999999998643
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.95 E-value=5.1e-06 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
...++..++|+||||||||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678899999999999999999998
No 324
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.95 E-value=3.7e-06 Score=58.69 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...++..++|+|+||||||||++.|++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999984
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.93 E-value=3.8e-06 Score=57.11 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..++++|+|||||||+++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999985
No 326
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.91 E-value=4.9e-06 Score=64.60 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++|+|+||||||||++.|+|...+..|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 78999999999999999999987665554
No 327
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.91 E-value=5.9e-06 Score=56.79 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.++..|+|+|++||||||+.+.|.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998754
No 328
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.90 E-value=6e-06 Score=60.67 Aligned_cols=27 Identities=19% Similarity=0.165 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..|+|+|++|||||||++.|.+.
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999874
No 329
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.89 E-value=4.7e-06 Score=63.76 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
.++..++|+||||||||||+++|++...+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 45678999999999999999999986543
No 330
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.89 E-value=8.6e-06 Score=54.58 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.++..|+|+|++||||||+.+.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 331
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.89 E-value=5.9e-06 Score=64.76 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
.+..++++|+||||||||+++|++...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 45679999999999999999999976543
No 332
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.88 E-value=9e-06 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...++..|+|.|++||||||+++.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3466789999999999999999999875
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.86 E-value=4.3e-06 Score=62.83 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCccccc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~~~~ 47 (170)
+.+++|+|+||||||||++.|+|...+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 68999999999999999999998765443
No 334
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.85 E-value=7.2e-06 Score=61.84 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
..++..++++|+||||||||+++|++...+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 456778999999999999999999987654
No 335
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.85 E-value=7.5e-06 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
+..|+|+|++||||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 336
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.85 E-value=4.7e-06 Score=69.65 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++.+++|+|+||||||||++.|+|...+..|
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 356678999999999999999999998765544
No 337
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.83 E-value=6.4e-06 Score=61.54 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
+..++.+++|+|+||+|||||++.|+|...+
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3457789999999999999999999997654
No 338
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.82 E-value=0.00015 Score=61.24 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
+..++|+||||+|||||++.+ |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 688999999999999999998 7643
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.77 E-value=1.4e-05 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..|+|+|++||||||+.+.|...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999998754
No 340
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.77 E-value=9.3e-06 Score=62.50 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAFK 46 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~ 46 (170)
...++.+++|+|+||+|||||++.|+|...+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 45678899999999999999999999976543
No 341
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.77 E-value=1.5e-05 Score=58.81 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
......|+|+|++|||||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455679999999999999999988654
No 342
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.76 E-value=0.00018 Score=59.30 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.++..++|+||||+|||||++.++|..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 467899999999999999999998864
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.74 E-value=1.2e-05 Score=52.85 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
++..++++|++|+|||||++++++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998554
No 344
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=1.1e-05 Score=54.37 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
++..++++|++|+|||||++++++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998654
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.72 E-value=5.7e-06 Score=55.66 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
..++|+|++|||||||++.|++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999987654
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.70 E-value=3e-05 Score=53.41 Aligned_cols=29 Identities=14% Similarity=0.152 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
...++..|+|+|++||||||+.+.|.+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34556789999999999999999999853
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.70 E-value=1.9e-05 Score=54.25 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..++..|+|+|++||||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45568999999999999999999875
No 348
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.70 E-value=7.7e-05 Score=56.02 Aligned_cols=79 Identities=11% Similarity=0.072 Sum_probs=47.4
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCC--------CHHHHHHHHHHHHH
Q 046239 60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRF--------SQEEEAAVHRLPTL 131 (170)
Q Consensus 60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~~~~l~~~ 131 (170)
...+.+ .+..+.+|||+|... ....+..+..+++++|+|+++++.- ...-.....++...
T Consensus 193 ~~~~~~-~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i 260 (362)
T 1zcb_A 193 EYDFEI-KNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI 260 (362)
T ss_dssp EEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred EEEeee-CCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence 344555 578899999999964 3444556778999999999998410 11112233344443
Q ss_pred hccc--ccceEEEEEEcCCCC
Q 046239 132 FGKK--IFDYMIVVFTGGDYL 150 (170)
Q Consensus 132 ~~~~--~~~~~ivv~tk~D~~ 150 (170)
.... ...|++++.||+|+.
T Consensus 261 ~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 261 VNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HTCGGGTTSEEEEEEECHHHH
T ss_pred hcchhhCCCCEEEEEEChhhh
Confidence 3221 224999999999976
No 349
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.68 E-value=2.1e-05 Score=54.85 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..+|+|+|++||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998753
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.67 E-value=6.3e-06 Score=56.18 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 046239 22 VVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~ 42 (170)
|+|+||+|+|||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998754
No 351
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.65 E-value=3.1e-05 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 046239 21 TVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..+|+|+||+|||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998653
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.65 E-value=3e-05 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+|+|+|++||||||+.+.|.+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999873
No 353
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=3.7e-05 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..+...|+++|++||||||+.+.|.+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999874
No 354
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.62 E-value=3.6e-05 Score=56.05 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
...++..|+|+|++|||||||.+.|.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999887543
No 355
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.60 E-value=3e-05 Score=57.23 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
-+.++|+|++|||||||+|.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999864
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.60 E-value=4.7e-05 Score=49.94 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q 046239 20 RTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~ 40 (170)
...+|+|+||+||||++.+|+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999975
No 357
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.59 E-value=3.5e-05 Score=53.64 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
..++..++++|+||+|||||++.+++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3466789999999999999999998543
No 358
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.58 E-value=3.6e-05 Score=51.85 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
-..++++|++|+|||||++.|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 368899999999999999999875
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.57 E-value=3.2e-05 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 360
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.56 E-value=3.4e-05 Score=64.55 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++.+++|+|+||||||||++.|+|.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356788999999999999999999953
No 361
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=0.00032 Score=52.09 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.+++.|++|+||||+++.+++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999988
No 362
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.55 E-value=4e-05 Score=55.78 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCccc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKAF 45 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~~ 45 (170)
...++..++|+|+||+|||||++.|++...+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4567789999999999999999998876543
No 363
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.54 E-value=0.00015 Score=55.16 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=51.8
Q ss_pred eEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCC--------CCHHHHHHHHHHHHH
Q 046239 60 MKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNR--------FSQEEEAAVHRLPTL 131 (170)
Q Consensus 60 ~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~--------~~~~~~~~~~~l~~~ 131 (170)
...+.+ .+..+.+|||.|... +...+..++.+++++|+|+++++- -...-.....++.+.
T Consensus 209 ~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i 276 (402)
T 1azs_C 209 ETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI 276 (402)
T ss_dssp EEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH
T ss_pred EEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHH
Confidence 344555 567899999999974 344455678899999999999840 011112334444444
Q ss_pred hccc--ccceEEEEEEcCCCCC
Q 046239 132 FGKK--IFDYMIVVFTGGDYLE 151 (170)
Q Consensus 132 ~~~~--~~~~~ivv~tk~D~~~ 151 (170)
.... ...|+++|.||+|+..
T Consensus 277 ~~~~~~~~~piiLvgNK~DL~~ 298 (402)
T 1azs_C 277 WNNRWLRTISVILFLNKQDLLA 298 (402)
T ss_dssp HTCTTCSSCCEEEEEECHHHHH
T ss_pred HhcccCCCCeEEEEEEChhhhh
Confidence 3321 2248999999999753
No 364
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.53 E-value=3.7e-05 Score=55.52 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 046239 22 VVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~ 42 (170)
++++||||+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999974
No 365
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.52 E-value=0.00022 Score=48.76 Aligned_cols=82 Identities=7% Similarity=-0.020 Sum_probs=48.3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcC
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGG 147 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~ 147 (170)
...+.++|+|+... . .....+. .+|.+++++..+ ..+..-...++.+.+........++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~-----~----~~~~~l~----~ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----V----ITSAAVM----VSDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-----H----HHHHHHH----HCSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-----H----HHHHHHH----HCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45789999998764 1 1222222 358899998887 44433455666665543212223669999999
Q ss_pred CCCCCChhhHHHHhhh
Q 046239 148 DYLEDNEKTLEDYLGH 163 (170)
Q Consensus 148 D~~~~~~~~~~~~~~~ 163 (170)
|.-......+.++++.
T Consensus 141 ~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 141 IEMATMLNVLKESIKD 156 (206)
T ss_dssp CTTEEEEHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHH
Confidence 8543322455666554
No 366
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.52 E-value=6.2e-05 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|+|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998864
No 367
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.52 E-value=5.6e-05 Score=56.84 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 046239 21 TVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~ 40 (170)
.++|+|+||||||||+++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999987
No 368
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.52 E-value=3.2e-06 Score=59.48 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCcccccc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~~~~~~ 48 (170)
..++|+||||||||||+++|++...+..+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 35688999999999999999987655443
No 369
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0017 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..-|++.||+|+|||+|.+++++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567899999999999999999863
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.50 E-value=6.3e-05 Score=49.91 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCCHHHHHHHh
Q 046239 20 RTVVLLGRTGNGKSATGNSI 39 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l 39 (170)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 371
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.49 E-value=7e-05 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999985
No 372
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.48 E-value=6.6e-05 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhh
Q 046239 18 GERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
.+..|++.|++||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999987
No 373
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.48 E-value=0.0001 Score=49.86 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....++..|+++|.+||||||+.+.|...
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34456788999999999999999998754
No 374
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.47 E-value=6.9e-05 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.47 E-value=6.5e-05 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
++..|++.|++||||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999763
No 376
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.47 E-value=6.9e-05 Score=56.53 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..++++|++|+|||||++.|++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456679999999999999999999873
No 377
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.46 E-value=0.0016 Score=46.08 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.....+++.|++|+|||++.+++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3456689999999999999999985
No 378
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0013 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.+..-+++.||+|+|||+|.+++++
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455689999999999999999986
No 379
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.45 E-value=9.1e-05 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 380
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.43 E-value=0.00012 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...+..|+|.|++||||||+.+.|..
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999874
No 381
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.43 E-value=0.00011 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...+..|+|.|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44456899999999999999998863
No 382
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.43 E-value=9.5e-05 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 383
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.42 E-value=0.00011 Score=53.49 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...+..|++.|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999999864
No 384
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=7.9e-05 Score=52.30 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..++..++|+|++|+|||||+..+++
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44678899999999999999999987
No 385
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.42 E-value=8.4e-05 Score=51.35 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..++..++++|++|+|||||+..+++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45677899999999999999999987
No 386
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.41 E-value=6.4e-05 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHhhCCc
Q 046239 22 VVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~ 43 (170)
++++|++|+|||||++++++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999743
No 387
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.41 E-value=9.5e-05 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...+|+++|.+|+|||||++.++..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 388
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.41 E-value=6e-05 Score=61.00 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
..++..++|+|+||||||||++.++
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3467889999999999999998764
No 389
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=0.00014 Score=49.21 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.++.+|+|+|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988653
No 390
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.39 E-value=0.00011 Score=49.81 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.+..|++.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998863
No 391
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=0.0012 Score=47.41 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.....+++.|++|+|||++.++++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999753
No 392
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.38 E-value=0.00012 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+++..|+++|++||||||+.+.|..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=8.4e-05 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
..++++||+|+|||||++.+++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 568999999999999999998754
No 394
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.36 E-value=0.00013 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.35 E-value=9.2e-05 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+.+|+|+|++||||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999875
No 396
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.35 E-value=2.3e-05 Score=59.66 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..++ .++|+|+||+|||||+++|.+
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 3456 899999999999999988854
No 397
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=0.00016 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhh
Q 046239 18 GERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
....|++.|++||||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999987
No 398
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0019 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..-|++.||+|+|||+|.+++++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 45677999999999999999999863
No 399
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0026 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..-|++.||+|+|||+|.+++++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHH
Confidence 44567999999999999999999963
No 400
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.0026 Score=48.31 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..-+++.||+|+|||+|.+++++.
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34466899999999999999999863
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.32 E-value=9.4e-05 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHhhCCc
Q 046239 22 VVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 22 i~lvG~~gsGKSTlin~l~~~~ 43 (170)
++|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999999743
No 402
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.32 E-value=0.00014 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 403
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.32 E-value=0.00013 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhh
Q 046239 18 GERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
....|+|.|++||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44789999999999999999886
No 404
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.31 E-value=0.00016 Score=49.81 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q 046239 20 RTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~ 40 (170)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 577899999999999999874
No 405
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.31 E-value=0.00016 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+..|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.31 E-value=0.00022 Score=48.76 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=21.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
.......|+|.|++||||||+.+.|.
T Consensus 11 ~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 11 SPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34455689999999999999998886
No 407
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.31 E-value=7.3e-05 Score=58.84 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHH--hhCCcc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNS--ILGRKA 44 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~--l~~~~~ 44 (170)
...++..++|+|+||||||||++. +.|...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 345778999999999999999999 556543
No 408
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00016 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
++..|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998863
No 409
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.31 E-value=0.00018 Score=49.13 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
++..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998764
No 410
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.30 E-value=0.00017 Score=48.23 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
-..++++|++|||||||++.|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988764
No 411
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.29 E-value=0.00012 Score=52.13 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
....+..|+++|++||||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999865
No 412
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.29 E-value=0.00012 Score=52.83 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...++..++|+|++|+|||||+..+++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457789999999999999999988863
No 413
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00017 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+...|+|.|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999998854
No 414
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.00017 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHhh
Q 046239 19 ERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~ 40 (170)
+..|++.|++||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998875
No 415
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.28 E-value=0.00013 Score=59.00 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHH
Q 046239 15 PSIGERTVVLLGRTGNGKSATG 36 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTli 36 (170)
...++.+++|+||||||||||+
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 3467789999999999999996
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.27 E-value=0.00016 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 417
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.26 E-value=0.00014 Score=55.78 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.+..++|+|+||+|||||+++|++..
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 45788999999999999999998644
No 418
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.25 E-value=0.00034 Score=52.36 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=45.2
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCC-------CCC-HHHHHHHHHHHHHhccc--cc
Q 046239 68 GQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARN-------RFS-QEEEAAVHRLPTLFGKK--IF 137 (170)
Q Consensus 68 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~~~-~~~~~~~~~l~~~~~~~--~~ 137 (170)
...+.+|||+|... +...+..++.+++++++|+++++ ..+ ..-.....++.+..... ..
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 35789999999975 33444567889999999999861 111 11123334444433221 22
Q ss_pred ceEEEEEEcCCCC
Q 046239 138 DYMIVVFTGGDYL 150 (170)
Q Consensus 138 ~~~ivv~tk~D~~ 150 (170)
.|+++|.||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 4899999999975
No 419
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.25 E-value=0.0002 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.++..|+|.|++||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999874
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.25 E-value=0.00022 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 421
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.24 E-value=0.00018 Score=51.24 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|+|+|++|||||||.+.|++
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999874
No 422
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.24 E-value=0.00017 Score=49.76 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..++..|+++|++||||||+.+.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998754
No 423
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.24 E-value=0.00019 Score=49.64 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 046239 21 TVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~ 40 (170)
+|+|.|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
No 424
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.23 E-value=7.2e-05 Score=59.16 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
..++..++|+|++|||||||.+.|.+...
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34678999999999999999999987654
No 425
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.23 E-value=0.00018 Score=48.14 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 426
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.23 E-value=0.0002 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q 046239 20 RTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~ 40 (170)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999874
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.23 E-value=0.00027 Score=49.60 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...+..|++.|++||||||+++.|...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 446788999999999999999998754
No 428
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.23 E-value=0.00029 Score=49.07 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
......+|.|+||+||||+|....|+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344456788899999999999888864
No 429
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0012 Score=50.60 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..-|++.||+|+|||+|.+++++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 44567999999999999999999863
No 430
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00023 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.++.+|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998863
No 431
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.20 E-value=0.0002 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
....|+|+|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 432
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.20 E-value=0.005 Score=45.32 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..-+++.||+|+|||+|.+++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34567999999999999999999863
No 433
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.20 E-value=0.00021 Score=49.34 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 434
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00017 Score=54.10 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
..+++|+||+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 889999999999999999875
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.19 E-value=0.00027 Score=49.70 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=22.5
Q ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 14 SPSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 14 ~~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..+.++.+|+|+|++||||||+.+.|.+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456678999999999999999998874
No 436
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.19 E-value=0.0003 Score=47.40 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|+|.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988863
No 437
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.18 E-value=0.00026 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhh
Q 046239 18 GERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
.+..|+|.|++||||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999987
No 438
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.16 E-value=0.00021 Score=52.68 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHhh
Q 046239 21 TVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~ 40 (170)
..+|+|+||+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 88999999999999999987
No 439
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.15 E-value=0.00019 Score=53.57 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
..++..++|+|++|+|||||++.+++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998764
No 440
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.14 E-value=0.00027 Score=48.00 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988864
No 441
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.13 E-value=0.0003 Score=49.97 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=20.8
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
......+|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 334456899999999999999988754
No 442
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.13 E-value=8.8e-05 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 046239 21 TVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.|++.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.12 E-value=0.00036 Score=48.94 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.......|+++|++||||||+.+.|..
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334456899999999999999998864
No 444
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.09 E-value=0.00069 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 17 IGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
.....|+|.|++||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
No 445
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.09 E-value=0.00029 Score=47.38 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.+|+|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988753
No 446
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00034 Score=49.71 Aligned_cols=24 Identities=29% Similarity=0.623 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
...+++.|++|+||||+.+++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 345899999999999999999863
No 447
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00025 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhh
Q 046239 19 ERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~ 40 (170)
+..|++.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 448
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.07 E-value=0.00039 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 449
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.06 E-value=0.0045 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.650 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.-++|+||+|+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999873
No 450
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.06 E-value=0.0004 Score=45.89 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 451
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.05 E-value=0.00038 Score=47.19 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 452
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.03 E-value=0.00035 Score=48.28 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 453
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.03 E-value=0.00041 Score=46.83 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 454
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.02 E-value=0.00038 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988863
No 455
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.02 E-value=0.00041 Score=47.93 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
+|+++||+||||+|....|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988874
No 456
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.01 E-value=0.00044 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.700 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 457
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.00058 Score=45.61 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998764
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.96 E-value=0.00046 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998853
No 459
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.94 E-value=0.0068 Score=45.71 Aligned_cols=24 Identities=29% Similarity=0.583 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+...++|.|++|+|||++.++++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.89 E-value=0.00067 Score=44.90 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.+|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998853
No 461
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.89 E-value=0.00064 Score=47.63 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=20.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
-.++..++++|++|+|||||...++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999976654
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.88 E-value=0.00069 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....+++.|++|+||||+++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998754
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.88 E-value=0.00048 Score=54.21 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhCCcc
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILGRKA 44 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~~~~ 44 (170)
...++..++|+|+||+|||||++.+++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345677899999999999999999997654
No 464
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.86 E-value=0.0006 Score=49.72 Aligned_cols=123 Identities=20% Similarity=0.146 Sum_probs=66.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCccccccCC-------CCcee--------EEEeeEEEE-----------------e
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG-------SSGVT--------ITCEMKTTV-----------------L 65 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~-------~~~~t--------~~~~~~~~~-----------------~ 65 (170)
++.+++++|++|+||||++..|++......+.. ..+.. .......+. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 677999999999999999999886543221100 00000 000000000 0
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEE
Q 046239 66 -KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVF 144 (170)
Q Consensus 66 -~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (170)
..+..+.++||||.... ......++....... .++.+++|+++... .. .++.+..+. +. ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~~---~~~~~~~~~-~~-~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QE---ALSVARAFD-EK-VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--HH---HHHHHHHHH-HH-TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--HH---HHHHHHHHh-hc-CCCCEEEE
Confidence 02457899999988643 122334444433332 46778888887522 22 223332221 11 13467889
Q ss_pred EcCCCCCC
Q 046239 145 TGGDYLED 152 (170)
Q Consensus 145 tk~D~~~~ 152 (170)
||.|.-..
T Consensus 245 nk~d~~~~ 252 (295)
T 1ls1_A 245 TKLDGDAR 252 (295)
T ss_dssp ECGGGCSS
T ss_pred ECCCCCcc
Confidence 99997544
No 465
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.86 E-value=0.0076 Score=49.74 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCCccccccCCCCceeEEEeeEEEEeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTITCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK 95 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 95 (170)
..+..-|++.||+|+|||+|.+++++... ..++.++.+-+.. .........+..
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~s--k~~gese~~lr~ 288 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMS--KLAGESESNLRK 288 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHS--SCTTHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhc--ccchHHHHHHHH
Confidence 44567799999999999999999997432 1112233322211 111234444555
Q ss_pred HHHhccCCccEEEEEEeCC
Q 046239 96 CIGLAKGGIHAVLVVFSAR 114 (170)
Q Consensus 96 ~~~~~~~~~~~il~v~~~~ 114 (170)
.+..+.....++||+-+++
T Consensus 289 lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 289 AFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHHHHTTSCSEEEEEESGG
T ss_pred HHHHHHHcCCeEEEEehhc
Confidence 5555556667888887765
No 466
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.86 E-value=0.00054 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
++..++++||||+|||||+++|.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998754
No 467
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.86 E-value=0.00062 Score=49.64 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.++..+++.|++|+|||++.+++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34567999999999999999999863
No 468
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.86 E-value=0.001 Score=48.17 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=37.5
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHHhccCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhcccccceEEEEEEcCCCCCC
Q 046239 74 IDTPGLFDSSAGSEFVGKEIVKCIGLAKGGIHAVLVVFSARNRFSQEEEAAVHRLPTLFGKKIFDYMIVVFTGGDYLED 152 (170)
Q Consensus 74 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~tk~D~~~~ 152 (170)
-..||+.. ...+.+.....++|+++.|+|+.++.+..+..+ .++++. +|.++|+||+|+...
T Consensus 4 ~w~PGhm~----------ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 4 QWFPGHMA----------KARREVTEKLKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA 65 (282)
T ss_dssp -----CTT----------HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH
T ss_pred cCCchHHH----------HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH
Confidence 35678764 233333445567799999999986655543222 222332 599999999999875
No 469
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.00075 Score=46.03 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 20 RTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
..+++.|++|+|||+|+++++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988643
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.85 E-value=0.00041 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988764
No 471
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.85 E-value=0.00065 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+...+++.|++|+||||+++++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 472
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.84 E-value=0.00073 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999874
No 473
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.83 E-value=0.00083 Score=49.34 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
+..|+|+||+|||||||...|+..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 457899999999999999998754
No 474
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.82 E-value=0.00077 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
.-...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988864
No 475
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.82 E-value=0.00076 Score=46.05 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHhhC
Q 046239 21 TVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~ 41 (170)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 476
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.81 E-value=0.00097 Score=49.44 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
+..|+|+||+|+|||||...|....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3579999999999999999998654
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.81 E-value=0.00099 Score=45.71 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..|+++|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999998764
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.80 E-value=0.001 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+..|+|+||+|||||||...|...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3467899999999999999998743
No 479
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.78 E-value=0.00072 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....+++.|++|+|||++++.+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999988754
No 480
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.77 E-value=0.00097 Score=48.48 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.+...+++.|++|+|||++.+.+.+..
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 344579999999999999999988643
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.77 E-value=0.0012 Score=50.54 Aligned_cols=27 Identities=33% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
......|+++|++||||||+.+.|...
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 344578899999999999999998753
No 482
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.77 E-value=0.0015 Score=47.47 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
......+++.||+|+|||+|.++++..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344456778899999999999999853
No 483
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.75 E-value=0.00088 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCCHHHHHHHhh
Q 046239 20 RTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~ 40 (170)
...+|.|+||+||||++.+|+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 567899999999999999875
No 484
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.74 E-value=0.00089 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=21.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
..++..++|+|++|+|||||+..++
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4567789999999999999999654
No 485
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.72 E-value=0.00092 Score=46.88 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=19.0
Q ss_pred CCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 15 PSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 15 ~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+..++..|++.|++||||||+++.|..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 335678899999999999999998764
No 486
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.71 E-value=0.00096 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..|+|.|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999888753
No 487
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.70 E-value=0.0012 Score=42.68 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....+++.|++|+|||++.+++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4456899999999999999999753
No 488
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.70 E-value=0.00096 Score=50.43 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.+..++++|++|+||||+++.++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999988643
No 489
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.69 E-value=0.0011 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHhhCC
Q 046239 20 RTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
..|+|+|++||||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999888753
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.68 E-value=0.0053 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 18 GERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 18 ~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
....++++|++|+|||++++.+...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998864
No 491
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.67 E-value=0.05 Score=39.68 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCCHHHHHHHhhC
Q 046239 20 RTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 20 ~~i~lvG~~gsGKSTlin~l~~ 41 (170)
..+++-|++|+|||+++++++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 3456667799999999999975
No 492
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.66 E-value=0.0011 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhC
Q 046239 19 ERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
...|+|.||+|+|||||...|..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHH
Confidence 45789999999999999988864
No 493
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.65 E-value=0.0013 Score=49.39 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHh
Q 046239 17 IGERTVVLLGRTGNGKSATGNSI 39 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l 39 (170)
....+|+|+|.+|||||||++.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 55679999999999999999875
No 494
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.63 E-value=0.0013 Score=46.34 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCCCCCCCcEEEEEcCCCCCHHHHHHHhhC
Q 046239 12 PTSPSIGERTVVLLGRTGNGKSATGNSILG 41 (170)
Q Consensus 12 ~~~~~~~~~~i~lvG~~gsGKSTlin~l~~ 41 (170)
+......+..|++.|++||||||+++.|..
T Consensus 20 ~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 20 FQSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp ------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 334444578899999999999999998754
No 495
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.63 E-value=0.0046 Score=51.46 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 19 ~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
...++++|++|+|||++++.++...
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999998653
No 496
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.62 E-value=0.0016 Score=47.31 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.....+++.|++|+|||++.++++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999998877543
No 497
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.61 E-value=0.00088 Score=56.19 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=21.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHHHhh
Q 046239 16 SIGERTVVLLGRTGNGKSATGNSIL 40 (170)
Q Consensus 16 ~~~~~~i~lvG~~gsGKSTlin~l~ 40 (170)
...+..++|+|+||||||||++.|+
T Consensus 665 I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 665 FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999999999864
No 498
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.56 E-value=0.0011 Score=47.26 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCC
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~ 42 (170)
.+...|++.|..||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999998754
No 499
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.0012 Score=49.22 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHhhCCc
Q 046239 17 IGERTVVLLGRTGNGKSATGNSILGRK 43 (170)
Q Consensus 17 ~~~~~i~lvG~~gsGKSTlin~l~~~~ 43 (170)
.....++|.|++|+|||||++.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445688999999999999999998643
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.54 E-value=0.001 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHhhCC
Q 046239 21 TVVLLGRTGNGKSATGNSILGR 42 (170)
Q Consensus 21 ~i~lvG~~gsGKSTlin~l~~~ 42 (170)
-++|+||+|+|||||++++++.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999974
Done!