BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046241
(638 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 163/387 (42%), Gaps = 68/387 (17%)
Query: 215 SPLYGHLSSSDSTATSMRVTWVSGDKEP--QQVQYGDGKSETSKVTTFTQDDMCNATALQ 272
+P H++ D +M ++WV+ D EP V+Y K+ ++ A
Sbjct: 20 APQQVHITQGDLVGRAMIISWVTMD-EPGSSAVRYWSEKNGRKRI----------AKGKM 68
Query: 273 SPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFL 332
S + F + G+IH + L+ + + Y G L + + F TPP G F
Sbjct: 69 STYRFFN-YSSGFIHHTTIRKLKYNTKYYYEVG--LRNTTRRFSFITPPQTGLDVPYTFG 125
Query: 333 TYGDMGKA-PLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL----V 387
GD+G++ + + HY E+ ++ +GD+SYA + V
Sbjct: 126 LIGDLGQSFDSNTTLSHY--------------ELSPKKGQTVLFVGDLSYADRYPNHDNV 171
Query: 388 EWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPA 447
WD + + ++ GNHE ++ E ++ +Y + P
Sbjct: 172 RWDTWGRFTERSVAYQPWIWTAGNHEIEFAP------EINETEPFKPFSYRYHVPYEASQ 225
Query: 448 RDKP-WYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYS 506
P WYSI++A H V+S+ + + QY W+KK++ V RS+TPWLI H P+Y+
Sbjct: 226 STSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYN 285
Query: 507 SLS------SSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSV----YK-QSCLAMP 555
S + ++ KF E + KVD+ GHVH YER+ V YK + L P
Sbjct: 286 SYNHHFMEGEAMRTKF----EAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTP 341
Query: 556 TKDANGIDTYDHSNYSAPVQAVIGMAG 582
KD SAPV IG AG
Sbjct: 342 VKDQ-----------SAPVYITIGDAG 357
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 163/387 (42%), Gaps = 68/387 (17%)
Query: 215 SPLYGHLSSSDSTATSMRVTWVSGDKEP--QQVQYGDGKSETSKVTTFTQDDMCNATALQ 272
+P H++ D +M ++WV+ D EP V+Y K+ ++ A
Sbjct: 26 APQQVHITQGDLVGRAMIISWVTMD-EPGSSAVRYWSEKNGRKRI----------AKGKM 74
Query: 273 SPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFL 332
S + F + G+IH + L+ + + Y G L + + F TPP G F
Sbjct: 75 STYRFFN-YSSGFIHHTTIRKLKYNTKYYYEVG--LRNTTRRFSFITPPQTGLDVPYTFG 131
Query: 333 TYGDMGKA-PLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL----V 387
GD+G++ + + HY E+ ++ +GD+SYA + V
Sbjct: 132 LIGDLGQSFDSNTTLSHY--------------ELSPKKGQTVLFVGDLSYADRYPNHDNV 177
Query: 388 EWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPA 447
WD + + ++ GNHE ++ E ++ +Y + P
Sbjct: 178 RWDTWGRFTERSVAYQPWIWTAGNHEIEFAP------EINETEPFKPFSYRYHVPYEASQ 231
Query: 448 RDKP-WYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYS 506
P WYSI++A H V+S+ + + QY W+KK++ V RS+TPWLI H P+Y+
Sbjct: 232 STSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYN 291
Query: 507 SLS------SSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSV----YKQS-CLAMP 555
S + ++ KF E + KVD+ GHVH YER+ V YK + L P
Sbjct: 292 SYNHHFMEGEAMRTKF----EAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTP 347
Query: 556 TKDANGIDTYDHSNYSAPVQAVIGMAG 582
KD SAPV IG AG
Sbjct: 348 VKDQ-----------SAPVYITIGDAG 363
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 163/387 (42%), Gaps = 68/387 (17%)
Query: 215 SPLYGHLSSSDSTATSMRVTWVSGDKEP--QQVQYGDGKSETSKVTTFTQDDMCNATALQ 272
+P H++ D +M ++WV+ D EP V+Y K+ ++ A
Sbjct: 18 APQQVHITQGDLVGRAMIISWVTMD-EPGSSAVRYWSEKNGRKRI----------AKGKM 66
Query: 273 SPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFL 332
S + F + G+IH + L+ + + Y G L + + F TPP G F
Sbjct: 67 STYRFFN-YSSGFIHHTTIRKLKYNTKYYYEVG--LRNTTRRFSFITPPQTGLDVPYTFG 123
Query: 333 TYGDMGKA-PLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL----V 387
GD+G++ + + HY E+ ++ +GD+SYA + V
Sbjct: 124 LIGDLGQSFDSNTTLSHY--------------ELSPKKGQTVLFVGDLSYADRYPNHDNV 169
Query: 388 EWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPA 447
WD + + ++ GNHE ++ E ++ +Y + P
Sbjct: 170 RWDTWGRFTERSVAYQPWIWTAGNHEIEFAP------EINETEPFKPFSYRYHVPYEASQ 223
Query: 448 RDKP-WYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYS 506
P WYSI++A H V+S+ + + QY W+KK++ V RS+TPWLI H P+Y+
Sbjct: 224 STSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYN 283
Query: 507 SLS------SSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSV----YK-QSCLAMP 555
S + ++ KF E + KVD+ GHVH YER+ V YK + L P
Sbjct: 284 SYNHHFMEGEAMRTKF----EAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTP 339
Query: 556 TKDANGIDTYDHSNYSAPVQAVIGMAG 582
KD SAPV IG AG
Sbjct: 340 VKDQ-----------SAPVYITIGDAG 355
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/310 (27%), Positives = 136/310 (43%), Gaps = 42/310 (13%)
Query: 284 GYIHTAVMTGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFLTYGDMGKAPLD 343
+IH + L + YR G + F TPP G F GD+G+
Sbjct: 84 AFIHHCTIKDLEYDTKYYYRLGFGDA--KRQFWFVTPPKPGPDVPYVFGLIGDIGQTHDS 141
Query: 344 DSA-EHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLV----EWDFFLHQISP 398
++ HY E ++ ++ +GD+SY+ + WD +
Sbjct: 142 NTTLTHY--------------EQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSER 187
Query: 399 VASRVSYMTAIGNHERDYLGSSGSVYESPDSGG-ECGVAYETYFPMPIPAR---DKPWYS 454
+ ++ GNHE DY +PD G + V + +P P A D WY+
Sbjct: 188 SVAYQPWIWTAGNHEIDY---------APDIGEYQPFVPFTNRYPTPHEASGSGDPLWYA 238
Query: 455 IEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSS-VD 513
I++A H V+S+ + + S QY+W ++ V+RS+TPWLI H P+Y+S + ++
Sbjct: 239 IKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYME 298
Query: 514 NKFVDAV-EPLLLDNKVDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSNYSA 572
+ + A+ EP + KVD+ GHVH+YER+ V S +A +A D SA
Sbjct: 299 GEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERV---SNVAYNIVNAKCTPVSDE---SA 352
Query: 573 PVQAVIGMAG 582
PV IG G
Sbjct: 353 PVYITIGDGG 362
>pdb|1UTE|A Chain A, Pig Purple Acid Phosphatase Complexed With Phosphate
Length = 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 25/232 (10%)
Query: 326 SEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGF 385
+ +LRF+ GD G P ++ H + ++ KA+A V D I +GD Y TG
Sbjct: 4 TPILRFVAVGDWGGVP--NAPFHTAR--EMANAKAIATTVKTLGADFILSLGDNFYFTGV 59
Query: 386 LVEWDFFLHQI------SPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVA--- 436
D + P V + GNH D+LG+ +
Sbjct: 60 HDAKDKRFQETFEDVFSDPSLRNVPWHVLAGNH--DHLGNVSAQIAYSKISKRWNFPSPY 117
Query: 437 YETYFPMPIPARDKPWYSIEQA---GVHFTVMSTEHDWSEN----SEQYEWMKKDMASVD 489
Y F +P + ++ G +S + + N Q W+KK +A+
Sbjct: 118 YRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAA-- 175
Query: 490 RSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYE 541
+K +++ +GH P++S + V + PLL +KV L GH HN +
Sbjct: 176 -AKEDYVLVAGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQ 226
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 92/243 (37%), Gaps = 45/243 (18%)
Query: 325 SSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATG 384
++ LRF+ GD G P ++ H + ++ K +A V D I +GD Y TG
Sbjct: 1 ATPALRFVAVGDWGGVP--NAPFHTAR--EMANAKEIARTVQILGADFILSLGDNFYFTG 56
Query: 385 FL-VEWDFFLHQISPVAS-----RVSYMTAIGNHERDYLGS-SGSVYESPDSGGECGVAY 437
+ F V S +V + GNH D+LG+ S + S ++
Sbjct: 57 VQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNH--DHLGNVSAQIAYSK-------ISK 107
Query: 438 ETYFPMPIPARDKPWYSIEQAGVHFTVMSTE-------------------HDWSENSEQY 478
FP P + + I Q V + + D Q
Sbjct: 108 RWNFPSPF---YRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQL 164
Query: 479 EWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVH 538
W+KK +A+ ++ +++ +GH P++S + V + PLL V L GH H
Sbjct: 165 SWLKKQLAA---AREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGVTAYLCGHDH 221
Query: 539 NYE 541
N +
Sbjct: 222 NLQ 224
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 52/252 (20%)
Query: 316 QFKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFH 375
+F TP LRF+ GD G P ++ H + ++ K +A V D I
Sbjct: 5 EFATP-------ALRFVAVGDWGGVP--NAPFHTAR--EMANAKEIARTVQILGADFILS 53
Query: 376 IGDISYATGFL-VEWDFFLHQISPVAS-----RVSYMTAIGNHERDYLGS-SGSVYESPD 428
+GD Y TG + F V S +V + GNH D+LG+ S + S
Sbjct: 54 LGDNFYFTGVQDINDKRFQETFEDVFSDRSLRKVPWYVLAGNH--DHLGNVSAQIAYSK- 110
Query: 429 SGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTE-------------------H 469
++ FP P + + I Q V + +
Sbjct: 111 ------ISKRWNFPSPF---YRLHFKIPQTNVSVAIFMLDTVTLCGNSDDFLSQQPERPR 161
Query: 470 DWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKV 529
D Q W+KK +A+ ++ +++ +GH P++S + V + PLL V
Sbjct: 162 DVKLARTQLSWLKKQLAA---AREDYVLVAGHYPVWSIAEHGPTHCLVKQLRPLLATYGV 218
Query: 530 DLALFGHVHNYE 541
L GH HN +
Sbjct: 219 TAYLCGHDHNLQ 230
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 477 QYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGH 536
Q W+KK +A+ +K +++ +GH P++S V + PLL V L GH
Sbjct: 186 QLSWLKKQLAA---AKEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGH 242
Query: 537 VHNYE 541
HN +
Sbjct: 243 DHNLQ 247
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 477 QYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGH 536
Q W+KK +A+ +K +++ +GH P++S V + PLL V L GH
Sbjct: 165 QLSWLKKQLAA---AKEDYVLVAGHYPIWSIAEHGPTRCLVKNLRPLLAAYGVTAYLCGH 221
Query: 537 VHNYE 541
HN +
Sbjct: 222 DHNLQ 226
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 335 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 393
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 394 SLDGGYVYTAGKCGLVPVLAENYK 417
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 333 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 391
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 392 SLDGGYVYTAGKCGLVPVLAENYK 415
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 335 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 393
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 394 SLDGGYVYTAGKCGLVPVLAENYK 417
>pdb|1SQY|A Chain A, Structure Of Human Diferric Lactoferrin At 2.5a Resolution
Using Crystals Grown At Ph 6.5
Length = 691
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 222 SSSDSTATSMRVTWVS-GDKEPQQVQYGDGKSETS-KVTTFTQDDMCNATALQSPAKDFG 279
S + A RV W + G++E ++ G SE S ++ + + C A L+ A D
Sbjct: 334 SEEEVAARRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEA-DAM 392
Query: 280 WHDPGYIHTAVMTGLRPSATFSYR 303
D GY++TA GL P +Y+
Sbjct: 393 SLDGGYVYTAGKCGLVPVLAENYK 416
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGV 460
I N R L +V + +SG G A + +FP P P +D PW ++ G+
Sbjct: 280 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP-KDHPWRTMPYNGM 330
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGV 460
I N R L +V + +SG G A + +FP P P +D PW ++ G+
Sbjct: 280 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP-KDHPWRTMPYNGM 330
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGV 460
I N R L +V + +SG G A + +FP P P +D PW ++ G+
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP-KDHPWRTMPYNGM 329
>pdb|3T04|D Chain D, Crystal Structure Of Monobody 7c12ABL1 SH2 DOMAIN COMPLEX
Length = 103
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 221 LSSSDSTATSMRVTWVSGDKEPQQVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGW 280
L D+T TS++++W + Q V+Y ++T T SP ++F
Sbjct: 14 LEVVDATPTSLKISWDAYYSSWQNVKY-------YRIT-------YGETGGDSPVQEF-- 57
Query: 281 HDPGYIHTAVMTGLRPSATFS 301
PGY TA ++GL+P ++
Sbjct: 58 TVPGYYSTATISGLKPGVDYT 78
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 23/78 (29%)
Query: 226 STATSMRVTWVSGDKEPQ--QVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDP 283
+T TS+ ++W SG Q ++ YG+ T SP ++F P
Sbjct: 15 ATPTSLLISWDSGRGSYQYYRITYGE-------------------TGGNSPVQEFTV--P 53
Query: 284 GYIHTAVMTGLRPSATFS 301
G +HTA ++GL+P ++
Sbjct: 54 GPVHTATISGLKPGVDYT 71
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 411 NHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGV 460
N R L ++ + +SG G A + +FP P P D PW ++ G+
Sbjct: 282 NTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAP-NDHPWRTMPHNGM 330
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 411 NHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGV 460
N R L ++ + +SG G A + +FP P P D PW ++ G+
Sbjct: 281 NTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAP-NDHPWRTMPHNGM 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,085,367
Number of Sequences: 62578
Number of extensions: 865415
Number of successful extensions: 2051
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2028
Number of HSP's gapped (non-prelim): 31
length of query: 638
length of database: 14,973,337
effective HSP length: 105
effective length of query: 533
effective length of database: 8,402,647
effective search space: 4478610851
effective search space used: 4478610851
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)