Query 046241
Match_columns 638
No_of_seqs 492 out of 2865
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 5.3E-71 1.1E-75 584.9 38.2 381 213-638 42-439 (452)
2 PLN02533 probable purple acid 100.0 5.9E-67 1.3E-71 571.4 44.1 363 211-637 39-419 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 3.8E-45 8.1E-50 382.7 30.8 277 328-636 4-294 (294)
4 PTZ00422 glideosome-associated 100.0 1.4E-33 3E-38 300.0 29.5 265 329-638 27-331 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 1.2E-31 2.5E-36 278.5 25.7 248 329-626 1-277 (277)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 5.4E-27 1.2E-31 241.8 24.1 239 327-622 3-261 (262)
7 KOG2679 Purple (tartrate-resis 99.9 2.7E-26 5.8E-31 226.4 19.8 263 317-636 34-329 (336)
8 PF09423 PhoD: PhoD-like phosp 99.9 1.9E-22 4E-27 224.0 26.2 243 283-544 60-381 (453)
9 cd07396 MPP_Nbla03831 Homo sap 99.9 1.5E-22 3.2E-27 209.6 22.5 192 329-542 1-230 (267)
10 cd07402 MPP_GpdQ Enterobacter 99.9 1.9E-22 4.1E-27 204.8 21.3 225 330-611 1-235 (240)
11 COG3540 PhoD Phosphodiesterase 99.9 1E-20 2.2E-25 200.3 19.3 293 215-543 36-421 (522)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 1.2E-20 2.6E-25 194.1 19.3 192 331-546 2-216 (256)
13 PRK11148 cyclic 3',5'-adenosin 99.8 1.8E-19 3.8E-24 187.4 24.6 248 317-625 5-263 (275)
14 cd07399 MPP_YvnB Bacillus subt 99.8 8.8E-20 1.9E-24 182.7 14.5 156 329-544 1-165 (214)
15 cd00842 MPP_ASMase acid sphing 99.7 2.8E-17 6E-22 172.6 15.4 183 355-543 52-264 (296)
16 PF00149 Metallophos: Calcineu 99.7 2.4E-17 5.2E-22 154.0 8.6 191 329-540 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 7.3E-16 1.6E-20 158.4 16.3 159 367-543 43-231 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.7 1.6E-15 3.5E-20 153.8 16.4 191 331-547 1-212 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.6 2.3E-15 5.1E-20 148.9 13.1 159 329-544 3-180 (199)
20 TIGR03767 P_acnes_RR metalloph 99.6 4.4E-14 9.6E-19 153.2 17.3 92 449-543 290-395 (496)
21 cd07392 MPP_PAE1087 Pyrobaculu 99.6 6.7E-14 1.5E-18 136.1 15.2 164 331-541 1-174 (188)
22 COG1409 Icc Predicted phosphoh 99.5 1E-13 2.2E-18 144.1 16.9 184 329-540 1-193 (301)
23 TIGR03729 acc_ester putative p 99.5 6.5E-14 1.4E-18 142.7 14.8 182 330-542 1-223 (239)
24 cd07385 MPP_YkuE_C Bacillus su 99.5 3.2E-13 6.9E-18 135.5 15.0 203 329-583 2-206 (223)
25 cd07400 MPP_YydB Bacillus subt 99.5 5.5E-13 1.2E-17 124.7 12.7 126 331-543 1-128 (144)
26 cd07388 MPP_Tt1561 Thermus the 99.4 2.4E-12 5.2E-17 129.4 17.1 177 328-538 4-189 (224)
27 TIGR03768 RPA4764 metallophosp 99.4 5.6E-12 1.2E-16 135.7 18.4 92 450-542 292-413 (492)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.4 1.2E-12 2.6E-17 131.0 11.2 198 330-542 1-203 (223)
29 PRK11340 phosphodiesterase Yae 99.4 5.1E-12 1.1E-16 131.2 16.3 169 328-548 49-222 (271)
30 PF14008 Metallophos_C: Iron/z 99.4 1.3E-12 2.9E-17 104.6 6.5 61 571-632 1-62 (62)
31 cd07404 MPP_MS158 Microscilla 99.3 6.6E-12 1.4E-16 120.5 11.4 144 331-542 1-151 (166)
32 KOG1432 Predicted DNA repair e 99.2 1.4E-09 3E-14 112.2 20.7 212 328-545 53-316 (379)
33 PF12850 Metallophos_2: Calcin 99.2 5.3E-10 1.1E-14 105.3 14.5 124 329-543 1-124 (156)
34 cd00838 MPP_superfamily metall 99.1 7.5E-10 1.6E-14 99.6 10.3 117 332-544 1-119 (131)
35 COG1408 Predicted phosphohydro 99.0 4.7E-09 1E-13 109.3 13.4 77 327-416 43-119 (284)
36 cd00841 MPP_YfcE Escherichia c 99.0 5.7E-09 1.2E-13 98.8 12.5 58 330-414 1-58 (155)
37 cd07397 MPP_DevT Myxococcus xa 99.0 2.6E-08 5.6E-13 100.7 16.8 174 329-542 1-210 (238)
38 cd07384 MPP_Cdc1_like Saccharo 98.9 2.5E-09 5.4E-14 103.5 9.0 60 357-416 33-101 (171)
39 cd07394 MPP_Vps29 Homo sapiens 98.9 1.2E-07 2.6E-12 92.4 20.7 171 330-628 1-171 (178)
40 PRK05340 UDP-2,3-diacylglucosa 98.9 3.7E-09 8E-14 108.0 10.5 176 329-542 1-201 (241)
41 PF14582 Metallophos_3: Metall 98.9 7.5E-09 1.6E-13 101.7 11.7 179 329-543 6-221 (255)
42 cd07379 MPP_239FB Homo sapiens 98.9 7.3E-09 1.6E-13 96.0 11.0 115 330-541 1-117 (135)
43 cd08166 MPP_Cdc1_like_1 unchar 98.9 6.2E-09 1.3E-13 102.0 10.4 109 364-543 37-150 (195)
44 cd08165 MPP_MPPE1 human MPPE1 98.9 4.4E-09 9.6E-14 100.2 8.5 82 332-415 1-89 (156)
45 COG2129 Predicted phosphoester 98.8 4.6E-07 1E-11 89.5 19.7 174 328-541 3-188 (226)
46 TIGR00583 mre11 DNA repair pro 98.8 4.1E-07 8.9E-12 99.2 21.4 84 329-414 4-122 (405)
47 PRK09453 phosphodiesterase; Pr 98.8 3E-07 6.5E-12 89.8 17.5 70 329-414 1-75 (182)
48 COG1768 Predicted phosphohydro 98.8 8.9E-08 1.9E-12 90.4 12.2 187 329-543 1-202 (230)
49 TIGR00040 yfcE phosphoesterase 98.7 2.8E-07 6.1E-12 87.8 15.2 62 329-414 1-63 (158)
50 cd00845 MPP_UshA_N_like Escher 98.7 1.7E-07 3.6E-12 96.1 13.5 188 329-542 1-208 (252)
51 TIGR01854 lipid_A_lpxH UDP-2,3 98.7 1.8E-07 3.9E-12 95.0 12.9 74 332-414 2-80 (231)
52 cd07389 MPP_PhoD Bacillus subt 98.7 1.3E-07 2.8E-12 95.4 11.7 166 330-543 1-207 (228)
53 KOG3770 Acid sphingomyelinase 98.7 4.6E-07 9.9E-12 100.3 16.5 180 355-542 194-406 (577)
54 cd08164 MPP_Ted1 Saccharomyces 98.7 1.4E-07 3E-12 92.4 10.6 59 357-416 31-112 (193)
55 cd07410 MPP_CpdB_N Escherichia 98.6 5.6E-07 1.2E-11 93.8 14.6 191 329-541 1-231 (277)
56 cd07406 MPP_CG11883_N Drosophi 98.6 5.6E-07 1.2E-11 92.9 12.8 187 329-541 1-208 (257)
57 cd07412 MPP_YhcR_N Bacillus su 98.5 1.4E-06 3E-11 91.5 15.2 210 329-542 1-243 (288)
58 cd07403 MPP_TTHA0053 Thermus t 98.5 3.5E-07 7.7E-12 84.3 8.7 48 496-543 58-106 (129)
59 cd07398 MPP_YbbF-LpxH Escheric 98.5 7.8E-07 1.7E-11 88.8 9.9 184 332-543 1-204 (217)
60 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.4 4.3E-06 9.4E-11 86.3 15.3 160 368-545 27-234 (262)
61 cd07408 MPP_SA0022_N Staphyloc 98.4 4.8E-06 1E-10 85.9 14.3 187 329-542 1-215 (257)
62 cd07411 MPP_SoxB_N Thermus the 98.4 5.7E-06 1.2E-10 85.7 14.4 185 329-541 1-220 (264)
63 COG0420 SbcD DNA repair exonuc 98.3 2E-06 4.4E-11 94.0 10.6 85 329-415 1-88 (390)
64 cd07409 MPP_CD73_N CD73 ecto-5 98.3 9.2E-06 2E-10 85.0 14.0 184 329-541 1-219 (281)
65 cd07405 MPP_UshA_N Escherichia 98.2 2.7E-05 5.9E-10 81.6 15.3 200 329-541 1-222 (285)
66 COG0622 Predicted phosphoester 98.2 0.00013 2.8E-09 70.6 17.8 64 329-415 2-65 (172)
67 cd07382 MPP_DR1281 Deinococcus 98.2 6.9E-05 1.5E-09 77.1 16.5 177 330-542 1-180 (255)
68 TIGR00619 sbcd exonuclease Sbc 98.1 5E-06 1.1E-10 85.6 7.8 85 329-415 1-88 (253)
69 cd07425 MPP_Shelphs Shewanella 98.1 7.3E-06 1.6E-10 81.9 8.1 70 332-415 1-80 (208)
70 PRK09419 bifunctional 2',3'-cy 98.1 4.1E-05 9E-10 94.7 16.0 193 328-541 660-883 (1163)
71 TIGR00282 metallophosphoestera 98.0 0.00023 4.9E-09 73.6 17.2 177 329-542 1-183 (266)
72 KOG3662 Cell division control 98.0 4.2E-05 9E-10 82.4 12.1 127 327-469 47-182 (410)
73 cd07390 MPP_AQ1575 Aquifex aeo 98.0 2E-05 4.2E-10 76.0 8.3 78 332-415 2-82 (168)
74 PRK10966 exonuclease subunit S 98.0 1.8E-05 3.8E-10 87.0 7.9 85 329-415 1-87 (407)
75 PHA02546 47 endonuclease subun 97.9 1.6E-05 3.5E-10 85.4 7.2 85 329-415 1-89 (340)
76 PRK09558 ushA bifunctional UDP 97.9 0.00015 3.3E-09 82.9 15.3 201 328-541 34-258 (551)
77 COG2908 Uncharacterized protei 97.9 2.4E-05 5.3E-10 78.2 7.4 74 332-414 1-79 (237)
78 COG0737 UshA 5'-nucleotidase/2 97.9 9.4E-05 2E-09 84.0 12.8 201 326-540 24-247 (517)
79 cd07407 MPP_YHR202W_N Saccharo 97.9 0.0003 6.4E-09 73.6 15.2 195 329-541 6-232 (282)
80 TIGR01530 nadN NAD pyrophospha 97.9 0.00024 5.3E-09 81.2 15.3 183 329-541 1-219 (550)
81 cd08162 MPP_PhoA_N Synechococc 97.7 0.00042 9.1E-09 73.6 13.8 39 491-541 206-245 (313)
82 cd07380 MPP_CWF19_N Schizosacc 97.6 0.00017 3.8E-09 68.2 8.1 56 356-413 12-68 (150)
83 cd07391 MPP_PF1019 Pyrococcus 97.6 7.4E-05 1.6E-09 72.2 5.5 83 332-415 1-88 (172)
84 PRK11907 bifunctional 2',3'-cy 97.6 0.0011 2.4E-08 78.3 15.7 64 319-382 106-172 (814)
85 TIGR00024 SbcD_rel_arch putati 97.4 0.00026 5.7E-09 71.6 6.9 84 329-414 15-101 (225)
86 cd07386 MPP_DNA_pol_II_small_a 97.4 0.00037 8E-09 71.2 8.1 75 332-415 2-94 (243)
87 PRK04036 DNA polymerase II sma 97.4 0.00047 1E-08 77.9 9.2 80 327-415 242-343 (504)
88 PHA02239 putative protein phos 97.4 0.00039 8.4E-09 70.8 7.4 68 329-414 1-72 (235)
89 PRK09419 bifunctional 2',3'-cy 97.3 0.0028 6.1E-08 78.8 15.0 193 328-541 41-281 (1163)
90 PRK09418 bifunctional 2',3'-cy 97.2 0.0064 1.4E-07 71.8 16.0 55 328-382 39-96 (780)
91 PRK00166 apaH diadenosine tetr 97.2 0.00088 1.9E-08 69.8 7.7 67 329-414 1-68 (275)
92 cd07424 MPP_PrpA_PrpB PrpA and 97.1 0.0012 2.5E-08 65.9 7.5 64 330-414 2-66 (207)
93 TIGR01390 CycNucDiestase 2',3' 97.1 0.0063 1.4E-07 70.7 14.0 54 329-382 3-59 (626)
94 cd07387 MPP_PolD2_C PolD2 (DNA 97.1 0.013 2.8E-07 60.4 14.5 170 331-543 2-218 (257)
95 cd07423 MPP_PrpE Bacillus subt 97.0 0.0014 2.9E-08 66.8 7.0 68 330-414 2-79 (234)
96 PRK09420 cpdB bifunctional 2', 97.0 0.011 2.4E-07 68.9 14.9 84 328-416 25-123 (649)
97 PRK13625 bis(5'-nucleosyl)-tet 96.9 0.0018 4E-08 66.3 6.9 69 329-414 1-78 (245)
98 PRK09968 serine/threonine-spec 96.9 0.0022 4.8E-08 64.6 7.3 65 329-414 15-80 (218)
99 cd07381 MPP_CapA CapA and rela 96.9 0.018 4E-07 58.5 14.0 88 451-542 122-221 (239)
100 KOG2863 RNA lariat debranching 96.9 0.0074 1.6E-07 63.4 10.6 171 329-539 1-229 (456)
101 cd07421 MPP_Rhilphs Rhilph pho 96.8 0.0034 7.4E-08 65.4 8.0 71 330-414 3-79 (304)
102 cd07413 MPP_PA3087 Pseudomonas 96.8 0.0027 5.9E-08 64.1 7.2 67 331-414 1-75 (222)
103 PRK11439 pphA serine/threonine 96.8 0.0027 5.8E-08 63.9 7.0 65 329-414 17-82 (218)
104 COG1692 Calcineurin-like phosp 96.8 0.17 3.6E-06 51.2 19.0 180 329-543 1-183 (266)
105 cd00144 MPP_PPP_family phospho 96.8 0.0034 7.3E-08 62.9 7.2 67 332-415 1-68 (225)
106 COG1311 HYS2 Archaeal DNA poly 96.6 0.046 1E-06 60.1 14.8 80 327-415 224-321 (481)
107 cd07422 MPP_ApaH Escherichia c 96.5 0.0066 1.4E-07 62.7 7.4 64 332-414 2-66 (257)
108 TIGR00668 apaH bis(5'-nucleosy 96.3 0.01 2.2E-07 61.7 7.1 66 330-414 2-68 (279)
109 COG4186 Predicted phosphoester 96.2 0.039 8.5E-07 51.8 9.7 79 329-414 4-85 (186)
110 COG1407 Predicted ICC-like pho 96.1 0.01 2.2E-07 59.8 6.0 86 329-415 20-110 (235)
111 smart00854 PGA_cap Bacterial c 96.0 0.11 2.5E-06 52.8 13.4 58 481-542 162-219 (239)
112 PF13277 YmdB: YmdB-like prote 95.9 0.28 6.1E-06 50.0 15.2 162 353-541 11-177 (253)
113 COG5555 Cytolysin, a secreted 95.7 0.02 4.4E-07 58.4 6.0 165 370-541 127-335 (392)
114 PF09587 PGA_cap: Bacterial ca 95.2 0.34 7.3E-06 49.7 13.2 63 477-543 169-231 (250)
115 KOG2310 DNA repair exonuclease 95.1 0.089 1.9E-06 58.3 8.8 53 329-383 14-66 (646)
116 smart00156 PP2Ac Protein phosp 94.8 0.093 2E-06 54.7 8.0 71 329-415 28-99 (271)
117 PF00041 fn3: Fibronectin type 94.7 0.28 6E-06 40.3 9.3 70 215-307 2-76 (85)
118 cd07416 MPP_PP2B PP2B, metallo 94.2 0.15 3.3E-06 54.0 8.1 69 330-415 44-114 (305)
119 KOG0196 Tyrosine kinase, EPH ( 94.2 0.51 1.1E-05 54.9 12.4 122 177-322 399-537 (996)
120 cd07420 MPP_RdgC Drosophila me 94.1 0.13 2.9E-06 54.7 7.4 70 330-415 52-123 (321)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 94.1 0.14 3.1E-06 53.7 7.5 69 330-415 43-113 (285)
122 KOG3325 Membrane coat complex 94.0 0.48 1E-05 44.2 9.7 85 519-637 98-183 (183)
123 PTZ00244 serine/threonine-prot 93.7 0.14 3.1E-06 53.9 6.6 68 331-415 54-123 (294)
124 cd07414 MPP_PP1_PPKL PP1, PPKL 93.7 0.18 4E-06 53.1 7.4 71 330-415 51-121 (293)
125 cd07418 MPP_PP7 PP7, metalloph 93.6 0.18 3.9E-06 54.7 7.3 70 329-415 66-138 (377)
126 PTZ00239 serine/threonine prot 93.4 0.22 4.8E-06 52.7 7.5 69 330-415 44-114 (303)
127 KOG3947 Phosphoesterases [Gene 93.3 2 4.3E-05 44.3 13.6 67 329-417 62-128 (305)
128 PTZ00480 serine/threonine-prot 93.2 0.21 4.6E-06 53.1 6.9 69 330-415 60-130 (320)
129 KOG4419 5' nucleotidase [Nucle 92.9 0.48 1E-05 53.4 9.3 58 475-541 211-270 (602)
130 cd07417 MPP_PP5_C PP5, C-termi 92.0 0.39 8.4E-06 51.2 7.1 23 517-539 233-255 (316)
131 PF04042 DNA_pol_E_B: DNA poly 91.5 0.35 7.6E-06 48.0 5.8 76 331-415 1-91 (209)
132 cd07419 MPP_Bsu1_C Arabidopsis 90.8 0.82 1.8E-05 48.6 8.0 21 517-537 242-262 (311)
133 cd00063 FN3 Fibronectin type 3 80.2 12 0.00026 29.8 8.3 20 287-306 57-76 (93)
134 PF10179 DUF2369: Uncharacteri 79.9 23 0.00051 37.4 11.9 94 212-308 171-281 (300)
135 KOG3513 Neural cell adhesion m 77.6 19 0.00041 44.0 11.5 72 213-306 820-896 (1051)
136 smart00060 FN3 Fibronectin typ 74.0 18 0.00039 27.8 7.4 22 286-307 56-77 (83)
137 PF07888 CALCOCO1: Calcium bin 73.6 23 0.0005 40.3 10.4 102 82-225 17-124 (546)
138 KOG0372 Serine/threonine speci 72.7 9.9 0.00021 38.7 6.5 41 373-415 73-114 (303)
139 KOG4221 Receptor mediating net 72.0 8.9 0.00019 47.0 6.9 119 175-321 573-712 (1381)
140 KOG4221 Receptor mediating net 63.6 1.2E+02 0.0025 37.9 13.8 122 170-320 478-611 (1381)
141 PTZ00235 DNA polymerase epsilo 63.2 35 0.00076 35.8 8.5 76 329-414 28-121 (291)
142 KOG4258 Insulin/growth factor 62.2 28 0.00061 41.3 8.2 118 215-337 488-623 (1025)
143 KOG0374 Serine/threonine speci 55.3 17 0.00036 39.1 4.7 23 517-539 233-255 (331)
144 KOG2476 Uncharacterized conser 51.6 36 0.00078 37.7 6.5 69 329-412 6-75 (528)
145 PF00960 Neocarzinostat: Neoca 48.4 22 0.00049 31.7 3.6 23 72-94 1-23 (110)
146 PF06874 FBPase_2: Firmicute f 43.6 14 0.00031 42.4 2.1 57 356-418 171-227 (640)
147 TIGR02855 spore_yabG sporulati 42.1 32 0.00068 35.7 4.1 50 479-539 115-165 (283)
148 KOG0371 Serine/threonine prote 40.4 70 0.0015 33.0 6.1 69 329-414 60-130 (319)
149 PF05582 Peptidase_U57: YabG p 39.0 44 0.00096 34.9 4.6 50 479-539 116-166 (287)
150 KOG0373 Serine/threonine speci 34.8 1.2E+02 0.0026 30.6 6.6 39 373-414 76-116 (306)
151 cd01987 USP_OKCHK USP domain i 33.0 1.9E+02 0.0041 25.2 7.4 24 517-540 74-97 (124)
152 PHA00407 phage lambda Rz1-like 32.6 29 0.00062 28.7 1.6 32 4-35 26-57 (84)
153 cd02856 Glycogen_debranching_e 30.2 68 0.0015 27.9 3.8 23 284-306 44-66 (103)
154 COG3855 Fbp Uncharacterized pr 27.1 44 0.00095 37.1 2.4 57 356-418 177-233 (648)
155 cd02852 Isoamylase_N_term Isoa 26.1 79 0.0017 28.2 3.6 23 284-306 48-70 (119)
156 cd02853 MTHase_N_term Maltooli 25.0 92 0.002 26.0 3.6 21 284-305 39-59 (85)
157 cd02860 Pullulanase_N_term Pul 24.3 94 0.002 26.7 3.6 24 284-307 46-69 (100)
158 KOG3513 Neural cell adhesion m 23.5 3.7E+02 0.0081 33.3 9.4 242 53-323 437-715 (1051)
159 KOG0375 Serine-threonine phosp 22.9 1.6E+02 0.0035 31.8 5.5 42 372-415 117-159 (517)
160 PF10989 DUF2808: Protein of u 22.4 1.1E+02 0.0024 28.6 4.0 27 73-99 91-117 (146)
161 smart00791 Agglutinin Amaranth 22.0 6.6E+02 0.014 23.5 9.6 60 54-118 21-87 (139)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-71 Score=584.92 Aligned_cols=381 Identities=40% Similarity=0.690 Sum_probs=311.8
Q ss_pred CCCCceEEEeecCCCCCceEEEEEeCCCCCcEEEEcCCCCccceee-EeecCCcccccccCCCCCCcCccCCceEEEEEE
Q 046241 213 PKSPLYGHLSSSDSTATSMRVTWVSGDKEPQQVQYGDGKSETSKVT-TFTQDDMCNATALQSPAKDFGWHDPGYIHTAVM 291 (638)
Q Consensus 213 ~~~P~~~~ls~~~~~~~sm~V~W~t~~~~~~~V~yg~~~~~~~~~~-t~~~~~~c~~~~~~~pa~~~g~~~~g~~h~a~l 291 (638)
.+.|+|+||++++. .++|+|+|.|.+....+|+||.......... ......+|+ ....+|++.|++|+|+|
T Consensus 42 ~~~peQvhlS~~~~-~~~m~VswvT~~~~~~~V~Yg~~~~~~~~~~~~~~~~~~~~-------~y~~~~~~sg~ih~~~~ 113 (452)
T KOG1378|consen 42 VNSPEQVHLSFTDN-LNEMRVSWVTGDGEENVVRYGEVKDKLDNSAARGMTEAWTD-------GYANGWRDSGYIHDAVM 113 (452)
T ss_pred CCCCCeEEEeccCC-CCcEEEEEeCCCCCCceEEEeecCCCccccccccceEEEec-------ccccccceeeeEeeeee
Confidence 36899999999987 4599999999998889999996433211110 111112222 11235678999999999
Q ss_pred cCCCCCcEEEEEEeeCCCCcceeeEEECCCCCCCCccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCcc
Q 046241 292 TGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVD 371 (638)
Q Consensus 292 ~gL~P~T~Y~Yrvg~~~~~~S~~~sF~T~p~~~~~~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pD 371 (638)
++|+|+|+|+||||++. .||++++|+|+| +++.+.+|+++||||......+. .... .+..++|
T Consensus 114 ~~L~~~t~YyY~~Gs~~-~wS~~f~F~t~p--~~~~~~~~~i~GDlG~~~~~~s~------------~~~~--~~~~k~d 176 (452)
T KOG1378|consen 114 KNLEPNTRYYYQVGSDL-KWSEIFSFKTPP--GQDSPTRAAIFGDMGCTEPYTST------------LRNQ--EENLKPD 176 (452)
T ss_pred cCCCCCceEEEEeCCCC-CcccceEeECCC--CccCceeEEEEccccccccccch------------HhHH--hcccCCc
Confidence 99999999999999986 499999999999 34467999999999987654321 1111 1234799
Q ss_pred EEEEeCCcccCCCcH-HHHHHHHHhhhhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCC--
Q 046241 372 SIFHIGDISYATGFL-VEWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPAR-- 448 (638)
Q Consensus 372 fvl~~GDi~y~~g~~-~~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~-- 448 (638)
+|||+|||+|++++. .+||+|++++||+++.+|+|++.||||.++.. +. |+.+|..+|.||.++.
T Consensus 177 ~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~-~~-----------~F~~y~~Rf~mP~~~s~s 244 (452)
T KOG1378|consen 177 AVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEIDWPP-QP-----------CFVPYSARFNMPGNSSES 244 (452)
T ss_pred EEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEecccccccCCC-cc-----------cccccceeeccCCCcCCC
Confidence 999999999999988 69999999999999999999999999998765 21 6789999999996643
Q ss_pred -CCCeEEEEECCEEEEEEeCCCCC--CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCC--C---CCCHHHHHHH
Q 046241 449 -DKPWYSIEQAGVHFTVMSTEHDW--SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLS--S---SVDNKFVDAV 520 (638)
Q Consensus 449 -~~~yYsfd~G~v~fi~LDT~~~~--~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~--~---~~~~~~r~~l 520 (638)
.+.|||||+|++|||+|+|+.++ ..+.+|++||+++|++++|+++||+||++|+|+|++.. + +....+++.|
T Consensus 245 ~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~L 324 (452)
T KOG1378|consen 245 DSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGL 324 (452)
T ss_pred CCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHH
Confidence 45899999999999999999874 45789999999999999987799999999999999886 3 2223678899
Q ss_pred HHHHHhCCCeEEEEccccccceecccccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCc--cCCCCCCCCCCcce
Q 046241 521 EPLLLDNKVDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFT--LDKFPDNADHTWSL 598 (638)
Q Consensus 521 ~~Ll~k~~VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~--~~~~~~~~~~~ws~ 598 (638)
++||.+++||++|+||+|+|||+||+||.+|..... -..+ .++.|||||++|.||+. +..+..+ +|+||+
T Consensus 325 E~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~~~~-----~~~~--~d~~aPvyI~~G~~G~~e~~~~~~~~-~p~~Sa 396 (452)
T KOG1378|consen 325 EPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGTGWG-----PVHL--VDGMAPIYITVGDGGNHEHLDPFSSP-QPEWSA 396 (452)
T ss_pred HHHHHHhceeEEEeccceehhccchhhcceeeccCC-----cccc--cCCCCCEEEEEccCCcccccCcccCC-CCcccc
Confidence 999999999999999999999999999999865322 1122 25789999999999974 5555544 899999
Q ss_pred eeeccccEEEEEE-eCCEEEEEEEEc--CCCcEEEEEEEEecC
Q 046241 599 IRISKFGYLRGNA-NKEEMKFEFVNS--DTREVEDSFRIIKAK 638 (638)
Q Consensus 599 ~~~~~~Gy~~v~v-~~~~L~~~~~~~--~dG~v~D~f~I~k~~ 638 (638)
+|..+|||.+|++ |.+++.++.+++ ..|++.|+|+|.|++
T Consensus 397 ~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~fwl~k~~ 439 (452)
T KOG1378|consen 397 FREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSFWLIKDY 439 (452)
T ss_pred cccccCCeEEEEEecCceEEEEEEeccCCCceEeeeEEEEccc
Confidence 9999999999999 789999999986 348999999999864
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=5.9e-67 Score=571.44 Aligned_cols=363 Identities=28% Similarity=0.506 Sum_probs=298.6
Q ss_pred CCCCCCceEEEeecCCCCCceEEEEEeCCCCCcEEEEcCCCCccc-----eeeEeecCCcccccccCCCCCCcCccCCce
Q 046241 211 ANPKSPLYGHLSSSDSTATSMRVTWVSGDKEPQQVQYGDGKSETS-----KVTTFTQDDMCNATALQSPAKDFGWHDPGY 285 (638)
Q Consensus 211 ~~~~~P~~~~ls~~~~~~~sm~V~W~t~~~~~~~V~yg~~~~~~~-----~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~ 285 (638)
+++..|+|+||++++ .++|+|+|.|.+...+.|+||+...... ..++|+. ...| .+|+
T Consensus 39 ~~~~~P~qvhls~~~--~~~m~V~W~T~~~~~~~V~yG~~~~~l~~~a~g~~~~~~~--------------~~~~-~~g~ 101 (427)
T PLN02533 39 DDPTHPDQVHISLVG--PDKMRISWITQDSIPPSVVYGTVSGKYEGSANGTSSSYHY--------------LLIY-RSGQ 101 (427)
T ss_pred CCCCCCceEEEEEcC--CCeEEEEEECCCCCCCEEEEecCCCCCcceEEEEEEEEec--------------cccc-cCCe
Confidence 467799999999996 5799999999988889999998654322 1222321 0122 4799
Q ss_pred EEEEEEcCCCCCcEEEEEEeeCCCCcceeeEEECCCCCCCCccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHh
Q 046241 286 IHTAVMTGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEV 365 (638)
Q Consensus 286 ~h~a~l~gL~P~T~Y~Yrvg~~~~~~S~~~sF~T~p~~~~~~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i 365 (638)
+|+|+|+||+|+|+|+||||.+ .+|+.++|+|+|.. .+++|+++||+|..... ..+++ .+
T Consensus 102 iH~v~l~~L~p~T~Y~Yrvg~~--~~s~~~~F~T~p~~---~~~~f~v~GDlG~~~~~-----------~~tl~----~i 161 (427)
T PLN02533 102 INDVVIGPLKPNTVYYYKCGGP--SSTQEFSFRTPPSK---FPIKFAVSGDLGTSEWT-----------KSTLE----HV 161 (427)
T ss_pred EEEEEeCCCCCCCEEEEEECCC--CCccceEEECCCCC---CCeEEEEEEeCCCCccc-----------HHHHH----HH
Confidence 9999999999999999999965 46899999999863 45999999999864311 22333 34
Q ss_pred hCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCC
Q 046241 366 DNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPI 445 (638)
Q Consensus 366 ~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~ 445 (638)
.+.+||||||+||++|+++...+||.|+++++++.+.+|+|+++||||.+... ....+.+..|.++|.||.
T Consensus 162 ~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~---------~~~~~~f~~y~~rf~mP~ 232 (427)
T PLN02533 162 SKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIP---------ILHPEKFTAYNARWRMPF 232 (427)
T ss_pred HhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccc---------cccCcCccchhhcccCCc
Confidence 56789999999999999888889999999999999999999999999985321 111234567889999996
Q ss_pred CC---CCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCC----CHHHHH
Q 046241 446 PA---RDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSV----DNKFVD 518 (638)
Q Consensus 446 ~~---~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~----~~~~r~ 518 (638)
.+ ..+.||+|++|++|||+||++.++...++|++||+++|++++|+++||+||++|+|+|++..... ...+++
T Consensus 233 ~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~ 312 (427)
T PLN02533 233 EESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKE 312 (427)
T ss_pred cccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHH
Confidence 43 34689999999999999999998888899999999999999888899999999999998764321 245788
Q ss_pred HHHHHHHhCCCeEEEEccccccceecccccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCcc---CCCCCCCCCC
Q 046241 519 AVEPLLLDNKVDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFTL---DKFPDNADHT 595 (638)
Q Consensus 519 ~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~---~~~~~~~~~~ 595 (638)
.|++||.+++||++|+||+|.|||++|+|++++ ++.|||||++|+||+.. ..+..+ +++
T Consensus 313 ~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~-----------------~~~gpvyiv~G~gG~~e~~~~~~~~~-~~~ 374 (427)
T PLN02533 313 SMETLLYKARVDLVFAGHVHAYERFDRVYQGKT-----------------DKCGPVYITIGDGGNREGLATKYIDP-KPD 374 (427)
T ss_pred HHHHHHHHhCCcEEEecceecccccccccCCcc-----------------CCCCCEEEEeCCCccccccccccCCC-CCC
Confidence 999999999999999999999999999999864 24689999999999863 234444 788
Q ss_pred cceeeeccccEEEEEE-eCCEEEEEEEEcCCC--cEEEEEEEEec
Q 046241 596 WSLIRISKFGYLRGNA-NKEEMKFEFVNSDTR--EVEDSFRIIKA 637 (638)
Q Consensus 596 ws~~~~~~~Gy~~v~v-~~~~L~~~~~~~~dG--~v~D~f~I~k~ 637 (638)
|+.+|..+|||.+|++ +.++|+++|+++++| .+.|+|||.|-
T Consensus 375 ~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~ 419 (427)
T PLN02533 375 ISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSL 419 (427)
T ss_pred ceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEec
Confidence 9999999999999996 999999999987666 38999999984
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=3.8e-45 Score=382.73 Aligned_cols=277 Identities=41% Similarity=0.709 Sum_probs=220.1
Q ss_pred cEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcH--HHHHHHHHhhhhhccCcce
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL--VEWDFFLHQISPVASRVSY 405 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~--~~wd~f~~~l~~l~~~vP~ 405 (638)
++||+++||+|.... .+.+++++|.++ ..+|||||++||++|+.+.. .+|+.|++.++++.+.+|+
T Consensus 4 ~~~f~v~gD~~~~~~----------~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 71 (294)
T cd00839 4 PFKFAVFGDMGQNTN----------NSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPY 71 (294)
T ss_pred cEEEEEEEECCCCCC----------CcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCc
Confidence 499999999997521 235677777654 47899999999999988765 7899999999999999999
Q ss_pred EEecCCCccCCCCCCCCcccCCCCCCccchhccccccCC---CCCCCCCeEEEEECCEEEEEEeCCCCC---CCcHHHHH
Q 046241 406 MTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMP---IPARDKPWYSIEQAGVHFTVMSTEHDW---SENSEQYE 479 (638)
Q Consensus 406 ~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P---~~~~~~~yYsfd~G~v~fi~LDT~~~~---~~~~~Q~~ 479 (638)
++++||||..... ..... ..+..++.++ .....+.||+|++|++|||+|||+... ..+.+|++
T Consensus 72 ~~~~GNHD~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~ 140 (294)
T cd00839 72 MVTPGNHEADYNF-SFYKI----------KAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYD 140 (294)
T ss_pred EEcCcccccccCC-CCccc----------ccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHH
Confidence 9999999986443 11100 0000011122 222356799999999999999998765 57899999
Q ss_pred HHHHHhccccCCCCCeEEEEeccCCccCCCCCC----CHHHHHHHHHHHHhCCCeEEEEccccccceecccccCccccCC
Q 046241 480 WMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSV----DNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSVYKQSCLAMP 555 (638)
Q Consensus 480 WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~----~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~~~~~~~~~ 555 (638)
||+++|+++++++.+|+||++|+|+|+...... ....++.|++||++|+|+++|+||+|.|+|++|+++++|+..
T Consensus 141 WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~- 219 (294)
T cd00839 141 WLEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGD- 219 (294)
T ss_pred HHHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccc-
Confidence 999999988766779999999999998764432 357889999999999999999999999999999999887511
Q ss_pred ccCCCCCccccCCCCCCCEEEEECCCCCccCCCCCC-CCCCcceeeeccccEEEEEEeC-CEEEEEEEEcCCCcEEEEEE
Q 046241 556 TKDANGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDN-ADHTWSLIRISKFGYLRGNANK-EEMKFEFVNSDTREVEDSFR 633 (638)
Q Consensus 556 ~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~-~~~~ws~~~~~~~Gy~~v~v~~-~~L~~~~~~~~dG~v~D~f~ 633 (638)
. ..| .+++|++||++|+||+.+...... +.++|+.++...+||++|++.+ ++|+++++++.+|+|+|+|+
T Consensus 220 ---~---~~~--~~~~g~~yiv~G~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v~D~f~ 291 (294)
T cd00839 220 ---C---NPY--SNPKGPVHIVIGAGGNDEGLDPFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVVIDSFW 291 (294)
T ss_pred ---c---ccc--cCCCccEEEEECCCccccCcCcccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeEEEEEE
Confidence 1 122 256899999999999987644322 1358999999999999999965 59999999988999999999
Q ss_pred EEe
Q 046241 634 IIK 636 (638)
Q Consensus 634 I~k 636 (638)
|.|
T Consensus 292 i~k 294 (294)
T cd00839 292 IIK 294 (294)
T ss_pred EeC
Confidence 987
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=1.4e-33 Score=299.96 Aligned_cols=265 Identities=23% Similarity=0.286 Sum_probs=196.8
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCc----HHHHHH-HHHhhhhhc--c
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGF----LVEWDF-FLHQISPVA--S 401 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~----~~~wd~-f~~~l~~l~--~ 401 (638)
++|+++||+|.+. ..+..+.++|.+.+++.++|||+.+||+. .+|. ..+|+. |-+.+.... .
T Consensus 27 l~F~~vGDwG~g~----------~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L 95 (394)
T PTZ00422 27 LRFASLGNWGTGS----------KQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDM 95 (394)
T ss_pred EEEEEEecCCCCc----------hhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchhh
Confidence 9999999999642 13577888888888889999999999998 4443 355765 444444433 5
Q ss_pred CcceEEecCCCccCCCCCCCCc--ccCCCC--CCccchhc------cccccCCCCCCCCCeEEE----EE----------
Q 046241 402 RVSYMTAIGNHERDYLGSSGSV--YESPDS--GGECGVAY------ETYFPMPIPARDKPWYSI----EQ---------- 457 (638)
Q Consensus 402 ~vP~~~v~GNHD~~~~~~sgs~--y~~~ds--~ge~~~~y------~~~f~~P~~~~~~~yYsf----d~---------- 457 (638)
++||++++||||+..+. .... +...-. .+.....| ..+|.||. .||.+ ..
T Consensus 96 ~~Pwy~vLGNHDy~Gn~-~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~-----~yY~~~~~f~~~~~~~~~~~~ 169 (394)
T PTZ00422 96 QIPFFTVLGQADWDGNY-NAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN-----YWYHYFTHFTDTSGPSLLKSG 169 (394)
T ss_pred CCCeEEeCCcccccCCc-hhhhccccccccccccccccccccccccCCCccCCc-----hhheeeeeeeccccccccccc
Confidence 79999999999985433 1110 100000 00000011 35788884 47754 21
Q ss_pred ---CCEEEEEEeCCCC---C---CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCC
Q 046241 458 ---AGVHFTVMSTEHD---W---SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNK 528 (638)
Q Consensus 458 ---G~v~fi~LDT~~~---~---~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~ 528 (638)
..+.|++|||..- + .....|++||+++|+.+ ++.++|+||++|||+|+++.++.+.++++.|+|||++|+
T Consensus 170 ~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~hg~~~~L~~~L~PLL~ky~ 248 (394)
T PTZ00422 170 HKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSSKGDSYLSYYLLPLLKDAQ 248 (394)
T ss_pred CCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCCCCCHHHHHHHHHHHHHcC
Confidence 1289999999631 1 23578999999999754 356789999999999999988888889999999999999
Q ss_pred CeEEEEccccccceecccccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCccCCCCCCCCCCcceeeeccccEEE
Q 046241 529 VDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDNADHTWSLIRISKFGYLR 608 (638)
Q Consensus 529 VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~~~~~ws~~~~~~~Gy~~ 608 (638)
||++|+||+|+|||..+ +++.||++|+||....... . ..+|+.+....+||+.
T Consensus 249 VdlYisGHDH~lq~i~~-------------------------~gt~yIvSGaGs~~~~~~~-~-~~~~s~F~~~~~GF~~ 301 (394)
T PTZ00422 249 VDLYISGYDRNMEVLTD-------------------------EGTAHINCGSGGNSGRKSI-M-KNSKSLFYSEDIGFCI 301 (394)
T ss_pred cCEEEEccccceEEecC-------------------------CCceEEEeCccccccCCCC-C-CCCCcceecCCCCEEE
Confidence 99999999999999631 2467999999988654322 2 4567888888899999
Q ss_pred EEEeCCEEEEEEEEcCCCcEEEEEEEEecC
Q 046241 609 GNANKEEMKFEFVNSDTREVEDSFRIIKAK 638 (638)
Q Consensus 609 v~v~~~~L~~~~~~~~dG~v~D~f~I~k~~ 638 (638)
+++++++|+++|++..+|++++++++.|++
T Consensus 302 ~~l~~~~l~~~fid~~~GkvL~~~~~~~~~ 331 (394)
T PTZ00422 302 HELNAEGMVTKFVSGNTGEVLYTHKQPLKK 331 (394)
T ss_pred EEEecCEEEEEEEeCCCCcEEEEeeecccc
Confidence 999999999999976799999999997653
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=1.2e-31 Score=278.50 Aligned_cols=248 Identities=28% Similarity=0.363 Sum_probs=183.3
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcH----HHH-HHHHHhhhhhccCc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL----VEW-DFFLHQISPVASRV 403 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~----~~w-d~f~~~l~~l~~~v 403 (638)
++|+++||+|.... +.+..+.+.|.+.+++.+|||||++||++|+.|.. .+| +.|.+.++.+..++
T Consensus 1 ~~f~~~gD~g~~~~---------~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~ 71 (277)
T cd07378 1 LRFLALGDWGGGGT---------AGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQV 71 (277)
T ss_pred CeEEEEeecCCCCC---------HHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcC
Confidence 48999999997521 12456677777777778999999999999887642 334 34555555555689
Q ss_pred ceEEecCCCccCCCCCCCC-cccCCCCCCccchhccccccCCCCCCCCCeEEEEEC------CEEEEEEeCCCCC-----
Q 046241 404 SYMTAIGNHERDYLGSSGS-VYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQA------GVHFTVMSTEHDW----- 471 (638)
Q Consensus 404 P~~~v~GNHD~~~~~~sgs-~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G------~v~fi~LDT~~~~----- 471 (638)
|+|+++||||..... ... .|. ...+..+|.+| ..||+|+++ +++||+|||....
T Consensus 72 P~~~v~GNHD~~~~~-~~~~~~~--------~~~~~~~~~~~-----~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~ 137 (277)
T cd07378 72 PWYLVLGNHDYSGNV-SAQIDYT--------KRPNSPRWTMP-----AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDD 137 (277)
T ss_pred CeEEecCCcccCCCc-hheeehh--------ccCCCCCccCc-----chheEEEeecCCCCCEEEEEEEeChhHcCcccc
Confidence 999999999985322 000 000 00012334444 468999998 7999999997531
Q ss_pred ----------CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 472 ----------SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 472 ----------~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
..+.+|++||+++|+++. .+|+||++|+|+++..........++.|++++++++|+++|+||+|.++
T Consensus 138 ~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~ 214 (277)
T cd07378 138 IASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHGPTSCLVDRLLPLLKKYKVDAYLSGHDHNLQ 214 (277)
T ss_pred ccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCCCcHHHHHHHHHHHHHcCCCEEEeCCcccce
Confidence 247899999999999853 3799999999999876555556788999999999999999999999999
Q ss_pred eecccccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCccCCCCCC--CCCCcceeeeccccEEEEEEeCCEEEEE
Q 046241 542 RTCSVYKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDN--ADHTWSLIRISKFGYLRGNANKEEMKFE 619 (638)
Q Consensus 542 Rt~p~~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~--~~~~ws~~~~~~~Gy~~v~v~~~~L~~~ 619 (638)
+..+ +..++.||++|++|......... ..++|..++...+||++++|++++|+++
T Consensus 215 ~~~~-----------------------~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~~l~~~ 271 (277)
T cd07378 215 HIKD-----------------------DGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKEELTVR 271 (277)
T ss_pred eeec-----------------------CCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecCEEEEE
Confidence 8643 11367899999988764432221 1236788888899999999999999999
Q ss_pred EEEcCCC
Q 046241 620 FVNSDTR 626 (638)
Q Consensus 620 ~~~~~dG 626 (638)
|++ .+|
T Consensus 272 ~~~-~~g 277 (277)
T cd07378 272 FYD-ADG 277 (277)
T ss_pred EEC-CCC
Confidence 996 455
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=5.4e-27 Score=241.80 Aligned_cols=239 Identities=15% Similarity=0.186 Sum_probs=169.7
Q ss_pred ccEEEEEEecCCCCCCCCCccc--ccCCChHHHHHHHHHHhhCC--CccEEEEeCCcccCCCcH----HHHHHHHHhhhh
Q 046241 327 EVLRFLTYGDMGKAPLDDSAEH--YIQPGSLSVIKAMADEVDNG--SVDSIFHIGDISYATGFL----VEWDFFLHQISP 398 (638)
Q Consensus 327 ~~~rf~v~GD~g~~~~~~~~~~--~~~pg~~~~~~~l~~~i~~~--~pDfvl~~GDi~y~~g~~----~~wd~f~~~l~~ 398 (638)
++++|+++||+|.+........ .........++++++.+.+. +||+|+++||+++..... .+|+.+.+.++.
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 3599999999999853321110 00112234567777777655 999999999999765432 456777777777
Q ss_pred hccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCC------C
Q 046241 399 VASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDW------S 472 (638)
Q Consensus 399 l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~------~ 472 (638)
+...+|+++++||||..... . .+....|...| +..||+|++|+++||+|||.... .
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~-~----------~~~~~~f~~~~-------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~ 144 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTP-T----------EESIKDYRDVF-------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPE 144 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCC-C----------hhHHHHHHHHh-------CCcceEEEECCEEEEEeccccccCcccccc
Confidence 66689999999999984322 0 01112233333 23589999999999999996432 2
Q ss_pred CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCC------CCCHHHHHHHHHHHHhCCCeEEEEccccccceeccc
Q 046241 473 ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSS------SVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSV 546 (638)
Q Consensus 473 ~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~------~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~ 546 (638)
...+|++||+++|+++.+.+.+++||++|+|++..... ......++.|.++|++++|+++|+||+|.+++..
T Consensus 145 ~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~-- 222 (262)
T cd07395 145 LAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR-- 222 (262)
T ss_pred chHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE--
Confidence 35799999999999875446678999999999864422 1235678899999999999999999999987631
Q ss_pred ccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCccCCCCCCCCCCcceeeeccccEEEEEEeCCEEEEEEEE
Q 046241 547 YKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDNADHTWSLIRISKFGYLRGNANKEEMKFEFVN 622 (638)
Q Consensus 547 ~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~~~~~ws~~~~~~~Gy~~v~v~~~~L~~~~~~ 622 (638)
+ .++.+++++++|..+.. ...||..+++++++++.|++.
T Consensus 223 ~-----------------------~g~~~~~~~~~~~~~~~--------------~~~g~~~~~v~~~~~~~~~~~ 261 (262)
T cd07395 223 Y-----------------------GGLEMVVTSAIGAQLGN--------------DKSGLRIVKVTEDKIVHEYYS 261 (262)
T ss_pred E-----------------------CCEEEEEcCceecccCC--------------CCCCcEEEEECCCceeeeeee
Confidence 1 23456777777754321 236999999999999999974
No 7
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.7e-26 Score=226.41 Aligned_cols=263 Identities=19% Similarity=0.292 Sum_probs=173.1
Q ss_pred EECCCCCCCCccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHH-HHHHh
Q 046241 317 FKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWD-FFLHQ 395 (638)
Q Consensus 317 F~T~p~~~~~~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd-~f~~~ 395 (638)
+.-++.+ +.+ ++|+++||+|.....+ +.++..+|.+..++.++||||.+||++|++|...+.| .|.+.
T Consensus 34 l~~p~~~-dgs-lsflvvGDwGr~g~~n---------qs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~s 102 (336)
T KOG2679|consen 34 LYDPAKS-DGS-LSFLVVGDWGRRGSFN---------QSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDS 102 (336)
T ss_pred hcCCCCC-CCc-eEEEEEcccccCCchh---------HHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhh
Confidence 4444432 334 9999999999544321 2345555655556689999999999999998766554 23333
Q ss_pred hhhhc----cCcceEEecCCCccCCCCCCCCcccCCCCCCccchhcc---ccccCCCCCCCCCeEE----EE--ECCEEE
Q 046241 396 ISPVA----SRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYE---TYFPMPIPARDKPWYS----IE--QAGVHF 462 (638)
Q Consensus 396 l~~l~----~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~---~~f~~P~~~~~~~yYs----fd--~G~v~f 462 (638)
++.+. -+.|||.+.||||+..+- .... ...|. .+|.-|. .||. .+ .-++.+
T Consensus 103 F~nIYT~pSLQkpWy~vlGNHDyrGnV-~AQl----------s~~l~~~d~RW~c~r-----sf~~~ae~ve~f~v~~~~ 166 (336)
T KOG2679|consen 103 FENIYTAPSLQKPWYSVLGNHDYRGNV-EAQL----------SPVLRKIDKRWICPR-----SFYVDAEIVEMFFVDTTP 166 (336)
T ss_pred hhhcccCcccccchhhhccCccccCch-hhhh----------hHHHHhhccceeccc-----HHhhcceeeeeecccccc
Confidence 33332 367999999999985443 1110 00121 2333221 1110 00 111233
Q ss_pred EEEeCCC-------CCC-------CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCC
Q 046241 463 TVMSTEH-------DWS-------ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNK 528 (638)
Q Consensus 463 i~LDT~~-------~~~-------~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~ 528 (638)
+++|+-. ++. ....|+.||+..|++ +.++|+||++|||+.+.+.++...++++.|.|||++++
T Consensus 167 f~~d~~~~~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~~HG~T~eL~~~LlPiL~~n~ 243 (336)
T KOG2679|consen 167 FMDDTFTLCTDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAGHHGPTKELEKQLLPILEANG 243 (336)
T ss_pred chhhheecccccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhhccCChHHHHHHHHHHHHhcC
Confidence 3333311 121 146788999999998 67899999999999999999999999999999999999
Q ss_pred CeEEEEccccccceecccccCccccCCccCCCCCccccCCCCCCCE-EEEECCCCCccCCCCCCCCCCcc----eeeecc
Q 046241 529 VDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSNYSAPV-QAVIGMAGFTLDKFPDNADHTWS----LIRISK 603 (638)
Q Consensus 529 VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~~G~~~y~~~~~~gpv-~iv~G~aG~~~~~~~~~~~~~ws----~~~~~~ 603 (638)
||++++||+|+.|... .++.++ |+++|+|......-.. ++.|. .+....
T Consensus 244 VdlY~nGHDHcLQhis------------------------~~e~~iqf~tSGagSkaw~g~~~--~~~~~p~~lkF~Ydg 297 (336)
T KOG2679|consen 244 VDLYINGHDHCLQHIS------------------------SPESGIQFVTSGAGSKAWRGTDH--NPEVNPKELKFYYDG 297 (336)
T ss_pred CcEEEecchhhhhhcc------------------------CCCCCeeEEeeCCcccccCCCcc--CCccChhheEEeeCC
Confidence 9999999999999852 112344 5555555433222111 22332 344556
Q ss_pred ccEEEEEEeCCEEEEEEEEcCCCcEEEEEEEEe
Q 046241 604 FGYLRGNANKEEMKFEFVNSDTREVEDSFRIIK 636 (638)
Q Consensus 604 ~Gy~~v~v~~~~L~~~~~~~~dG~v~D~f~I~k 636 (638)
-||+-++++..++++.|++. .|+++.+....|
T Consensus 298 qGfmsv~is~~e~~vvfyD~-~G~~Lhk~~t~k 329 (336)
T KOG2679|consen 298 QGFMSVEISHSEARVVFYDV-SGKVLHKWSTSK 329 (336)
T ss_pred CceEEEEEecceeEEEEEec-cCceEEEeeccc
Confidence 69999999999999999984 899988776554
No 8
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.91 E-value=1.9e-22 Score=224.00 Aligned_cols=243 Identities=20% Similarity=0.290 Sum_probs=126.9
Q ss_pred CceEEEEEEcCCCCCcEEEEEEeeCC-CCcceeeEEECCCCCCCCccEEEEEEecCCCCCCCCCcccccCCChHHHHHHH
Q 046241 283 PGYIHTAVMTGLRPSATFSYRYGSDL-VGWSDKIQFKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAM 361 (638)
Q Consensus 283 ~g~~h~a~l~gL~P~T~Y~Yrvg~~~-~~~S~~~sF~T~p~~~~~~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l 361 (638)
..+++++.++||+|+|+|+||+..++ ...|+.++|+|+|...... +||+++||.+.... ...+++.|
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~~~-~r~a~~SC~~~~~~-----------~~~~~~~~ 127 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDPDP-FRFAFGSCQNYEDG-----------YFPAYRRI 127 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT------EEEEEE----CCC--------------HHHHHH
T ss_pred CCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCCCc-eEEEEECCCCcccC-----------hHHHHHhh
Confidence 35889999999999999999999853 3567899999997654444 99999999875321 13444444
Q ss_pred HHHhhCCCccEEEEeCCcccCCCc-----------------------HHH----HHHHH--HhhhhhccCcceEEecCCC
Q 046241 362 ADEVDNGSVDSIFHIGDISYATGF-----------------------LVE----WDFFL--HQISPVASRVSYMTAIGNH 412 (638)
Q Consensus 362 ~~~i~~~~pDfvl~~GDi~y~~g~-----------------------~~~----wd~f~--~~l~~l~~~vP~~~v~GNH 412 (638)
++ +.+|||+||+||++|+++. ... |..+. ..++.+.+++|++.++.+|
T Consensus 128 a~---~~~~D~~l~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDH 204 (453)
T PF09423_consen 128 AE---RDDPDFVLHLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDH 204 (453)
T ss_dssp TT----S--SEEEE-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---ST
T ss_pred hc---cCCCcEEEEeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCc
Confidence 32 2689999999999999842 111 22221 2456667899999999999
Q ss_pred ccCCCCCCCCcccCCC-CCC-------ccchhccccccCCC----CCCCCCeEEEEECC-EEEEEEeCCCCCC-------
Q 046241 413 ERDYLGSSGSVYESPD-SGG-------ECGVAYETYFPMPI----PARDKPWYSIEQAG-VHFTVMSTEHDWS------- 472 (638)
Q Consensus 413 D~~~~~~sgs~y~~~d-s~g-------e~~~~y~~~f~~P~----~~~~~~yYsfd~G~-v~fi~LDT~~~~~------- 472 (638)
|+..+. .+..-...+ ..+ .....|.++.++.. ......|++|.+|+ +.|++||++....
T Consensus 205 di~nn~-~~~~~~~~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~ 283 (453)
T PF09423_consen 205 DIGNNW-WGDGAENHQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGP 283 (453)
T ss_dssp TTSTT--BTTB-STT---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSS
T ss_pred eecccc-cCCccccccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhcccccccccc
Confidence 995433 111000000 000 01123333333321 11345789999999 9999999975321
Q ss_pred --------------CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCC-------------CCCCHHHHHHHHHHHH
Q 046241 473 --------------ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLS-------------SSVDNKFVDAVEPLLL 525 (638)
Q Consensus 473 --------------~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~-------------~~~~~~~r~~l~~Ll~ 525 (638)
.|.+|++||++.|++ +.++|+|++.-.|+..... +..-..-|++|..+|.
T Consensus 284 ~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~---s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~ 360 (453)
T PF09423_consen 284 GDTCPAADDPSRTMLGEEQWDWLEDWLAS---SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLR 360 (453)
T ss_dssp EE--HHHH-TT--SS-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCccCcCCHHHHHHHHHHHhc---CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHH
Confidence 379999999999997 4589999998877743321 2233566899999998
Q ss_pred hCCCe--EEEEccccccceec
Q 046241 526 DNKVD--LALFGHVHNYERTC 544 (638)
Q Consensus 526 k~~Vd--lvlsGH~H~YeRt~ 544 (638)
+.++. ++|+|++|......
T Consensus 361 ~~~~~~vV~LSGDvH~~~~~~ 381 (453)
T PF09423_consen 361 ESGIRNVVFLSGDVHASAASR 381 (453)
T ss_dssp HTT---EEEEE-SSSSEEEEE
T ss_pred hhCCCCEEEEecCcchheeee
Confidence 88664 88999999987654
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=1.5e-22 Score=209.60 Aligned_cols=192 Identities=20% Similarity=0.243 Sum_probs=133.2
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCc--HHHHHHHHHhhhhhccCcceE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGF--LVEWDFFLHQISPVASRVSYM 406 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~--~~~wd~f~~~l~~l~~~vP~~ 406 (638)
|||++++|+|.......... ........++++++.+++.+||+|+++||+++.... ..+|+.+.+.++.+ .+|++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~-~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l--~~p~~ 77 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPR-YYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRL--KGPVH 77 (267)
T ss_pred CeEEEEeccccccCCCcccc-hHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhc--CCCEE
Confidence 69999999996543211111 112245667778888877889999999999964432 15566666666654 58999
Q ss_pred EecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCC----------------
Q 046241 407 TAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHD---------------- 470 (638)
Q Consensus 407 ~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~---------------- 470 (638)
+++||||..... . ..+.. ......+..||+|++++++||+||+...
T Consensus 78 ~v~GNHD~~~~~--~-------------~~~~~---~~~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~ 139 (267)
T cd07396 78 HVLGNHDLYNPS--R-------------EYLLL---YTLLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENAD 139 (267)
T ss_pred EecCcccccccc--H-------------hhhhc---ccccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHH
Confidence 999999984322 0 00000 1111224569999999999999999531
Q ss_pred ------------------CCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCC-CCCCHHHHHHHHHHHHhC-CCe
Q 046241 471 ------------------WSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLS-SSVDNKFVDAVEPLLLDN-KVD 530 (638)
Q Consensus 471 ------------------~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~-~~~~~~~r~~l~~Ll~k~-~Vd 530 (638)
.....+|++||++.|+++.. +..++||++|+|++.... .......++.+.+++.++ +|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~~~~~~~~~~~~~ll~~~~~V~ 218 (267)
T cd07396 140 DNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYGCVK 218 (267)
T ss_pred HhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCccccccCHHHHHHHHHhCCCEE
Confidence 13468999999999997642 335689999999976543 111122357889999996 899
Q ss_pred EEEEccccccce
Q 046241 531 LALFGHVHNYER 542 (638)
Q Consensus 531 lvlsGH~H~YeR 542 (638)
++|+||+|.++.
T Consensus 219 ~v~~GH~H~~~~ 230 (267)
T cd07396 219 ACISGHDHEGGY 230 (267)
T ss_pred EEEcCCcCCCCc
Confidence 999999999984
No 10
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.90 E-value=1.9e-22 Score=204.81 Aligned_cols=225 Identities=13% Similarity=0.154 Sum_probs=154.8
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC--CccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG--SVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~--~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
||++++|+|.+..... ..........++++++.+++. +||+|+++||+++. +...+|+.+.+.++.+ .+|++.
T Consensus 1 r~~~iSDlH~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~-~~~~~~~~~~~~l~~~--~~p~~~ 75 (240)
T cd07402 1 LLAQISDLHLRADGEG--ALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD-GSPESYERLRELLAAL--PIPVYL 75 (240)
T ss_pred CEEEEeCCccCCCCcc--eecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC-CCHHHHHHHHHHHhhc--CCCEEE
Confidence 6999999998754321 011112355677888877765 99999999999965 4566788888887776 799999
Q ss_pred ecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCC----CCcHHHHHHHHH
Q 046241 408 AIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDW----SENSEQYEWMKK 483 (638)
Q Consensus 408 v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~----~~~~~Q~~WL~~ 483 (638)
++||||.... +.+.|.......+..+|+|+.++++|++||+.... ....+|++||++
T Consensus 76 v~GNHD~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~ 136 (240)
T cd07402 76 LPGNHDDRAA-------------------MRAVFPELPPAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEA 136 (240)
T ss_pred eCCCCCCHHH-------------------HHHhhccccccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHH
Confidence 9999997311 11112111001234578999999999999996532 246889999999
Q ss_pred HhccccCCCCCeEEEEeccCCccCCCCCC---CHHHHHHHHHHHHhC-CCeEEEEccccccceecccccCccccCCccCC
Q 046241 484 DMASVDRSKTPWLIFSGHRPMYSSLSSSV---DNKFVDAVEPLLLDN-KVDLALFGHVHNYERTCSVYKQSCLAMPTKDA 559 (638)
Q Consensus 484 ~La~~~r~~~~w~IV~~H~P~yss~~~~~---~~~~r~~l~~Ll~k~-~VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~ 559 (638)
.|++.. .+++|+++|+|++....... ....++.+.+++.++ +|+++|+||.|......
T Consensus 137 ~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~--------------- 198 (240)
T cd07402 137 ALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS--------------- 198 (240)
T ss_pred HHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE---------------
Confidence 999853 34678899999976542111 112377899999999 99999999999976532
Q ss_pred CCCccccCCCCCCCEEEEECCCCCccCCCCCCCCCCcceeeeccccEEEEEE
Q 046241 560 NGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDNADHTWSLIRISKFGYLRGNA 611 (638)
Q Consensus 560 ~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~~~~~ws~~~~~~~Gy~~v~v 611 (638)
.++..++++|+.|..+... ++........+||..+.+
T Consensus 199 ----------~~g~~~~~~gs~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 235 (240)
T cd07402 199 ----------WGGIPLLTAPSTCHQFAPD-----LDDFALDALAPGYRALSL 235 (240)
T ss_pred ----------ECCEEEEEcCcceeeecCC-----CCcccccccCCCCcEEEE
Confidence 1245678888888765332 222222334578888876
No 11
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1e-20 Score=200.26 Aligned_cols=293 Identities=22% Similarity=0.316 Sum_probs=193.2
Q ss_pred CC-ceEEEeecCCCCCceEEEEEeCC--------CCCcEEEEcCCCCccceeeEeecCCcccccccCCCCCCcCccCCce
Q 046241 215 SP-LYGHLSSSDSTATSMRVTWVSGD--------KEPQQVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDPGY 285 (638)
Q Consensus 215 ~P-~~~~ls~~~~~~~sm~V~W~t~~--------~~~~~V~yg~~~~~~~~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~ 285 (638)
.| .+..++.|+...++ .|-|+.-+ +..-.+||++.+.....+ +.. .+..+|+ -.+
T Consensus 36 rpaF~~GVaSGDp~~~s-vviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~iv----r~g----t~~a~p~-------~dh 99 (522)
T COG3540 36 RPAFTHGVASGDPTATS-VVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIV----RKG----TVIASPE-------LDH 99 (522)
T ss_pred CCccccccccCCCCCCe-EEEEEccCCccccCCCCcceEEEecCCccHHHHH----hcC----CccCCcc-------cCc
Confidence 45 55566777654444 77788766 334467777655432211 111 1222343 247
Q ss_pred EEEEEEcCCCCCcEEEEEEeeCCCCcceeeEEECCCCCCCCccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHh
Q 046241 286 IHTAVMTGLRPSATFSYRYGSDLVGWSDKIQFKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEV 365 (638)
Q Consensus 286 ~h~a~l~gL~P~T~Y~Yrvg~~~~~~S~~~sF~T~p~~~~~~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i 365 (638)
.+++.+.||+|++.|+||+..+. .-|+.++|||+|..+. .++|+.+||........ +-..+.+.|
T Consensus 100 tv~v~~~gL~P~~~yfYRf~~~~-~~spvGrtrTapa~~~--~i~~~~fa~ascQ~~~~--------gy~~aY~~m---- 164 (522)
T COG3540 100 TVHVDLRGLSPDQDYFYRFKAGD-ERSPVGRTRTAPAPGR--AIRFVWFADASCQGWEI--------GYMTAYKTM---- 164 (522)
T ss_pred eEEEeccCCCCCceEEEEEeeCC-ccccccccccCCCCCC--cchhhhhhhcccccccc--------chhHHHHHH----
Confidence 88999999999999999998865 4579999999999764 38899999976654321 234444555
Q ss_pred hCCCccEEEEeCCcccCCCcHHH----------------------HHHHH---------HhhhhhccCcceEEecCCCcc
Q 046241 366 DNGSVDSIFHIGDISYATGFLVE----------------------WDFFL---------HQISPVASRVSYMTAIGNHER 414 (638)
Q Consensus 366 ~~~~pDfvl~~GDi~y~~g~~~~----------------------wd~f~---------~~l~~l~~~vP~~~v~GNHD~ 414 (638)
.+.+|||+||.||.+|+.|.... .|.|. ..++...+..|+++.+.+||.
T Consensus 165 a~~~~D~viH~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv 244 (522)
T COG3540 165 AKEEPDFVIHLGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEV 244 (522)
T ss_pred HhcCCCEEEEcCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccc
Confidence 55789999999999999753211 12222 234556679999999999999
Q ss_pred CCCCCCCCcccCCCC-CCc---------cchhccccccCCCCC---CCCCeEEEEECC-EEEEEEeCCCCC---------
Q 046241 415 DYLGSSGSVYESPDS-GGE---------CGVAYETYFPMPIPA---RDKPWYSIEQAG-VHFTVMSTEHDW--------- 471 (638)
Q Consensus 415 ~~~~~sgs~y~~~ds-~ge---------~~~~y~~~f~~P~~~---~~~~yYsfd~G~-v~fi~LDT~~~~--------- 471 (638)
..+. +.+.-.. |+ ..+ ..++|.++.++-... ....|.+|.||+ +.|.+||++...
T Consensus 245 ~NN~-~~~~~~n-D~~~~~k~~~~r~a~A~qAyyE~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~ 322 (522)
T COG3540 245 ANNW-SNSIDEN-DSRYDEKDFVLRAAAARQAYYEHMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGN 322 (522)
T ss_pred cccc-ccccccc-CCCCChHHHHHHHHHHHHHHHHhCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCC
Confidence 7554 2111110 22 111 112344433221111 246799999999 689999997543
Q ss_pred -------------CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccC----C-----------CCCCCHHHHHHHHHH
Q 046241 472 -------------SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSS----L-----------SSSVDNKFVDAVEPL 523 (638)
Q Consensus 472 -------------~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss----~-----------~~~~~~~~r~~l~~L 523 (638)
-.|.+|.+||+..|.+ +++.|.|+..-.|+--. . .+.+....|+.|...
T Consensus 323 ~~~~q~~~~~~~~mlG~~QeqWLk~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~f 399 (522)
T COG3540 323 PPNCQAVAGSAATMLGEQQEQWLKRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRF 399 (522)
T ss_pred cchhhhhhCccccchhhHHHHHHHhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHH
Confidence 1289999999999997 78999998877776211 1 122335568999999
Q ss_pred HHhCCCe--EEEEcccccccee
Q 046241 524 LLDNKVD--LALFGHVHNYERT 543 (638)
Q Consensus 524 l~k~~Vd--lvlsGH~H~YeRt 543 (638)
+...++. ++|+|.+|...-.
T Consensus 400 i~~~~~~N~V~LtgDvH~~wA~ 421 (522)
T COG3540 400 IADRKIRNTVVLTGDVHYSWAH 421 (522)
T ss_pred HHhcCCCCcEEEechhHHHHHh
Confidence 9988665 8999999986654
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.86 E-value=1.2e-20 Score=194.10 Aligned_cols=192 Identities=17% Similarity=0.218 Sum_probs=127.9
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHH-HHHHHHHhhCCCccEEEEeCCcccCCC--------cHHHHHHHHHhhhhhc-
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSV-IKAMADEVDNGSVDSIFHIGDISYATG--------FLVEWDFFLHQISPVA- 400 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~-~~~l~~~i~~~~pDfvl~~GDi~y~~g--------~~~~wd~f~~~l~~l~- 400 (638)
|+.++|+|.+.... ..... .+.+.+.+++.+||+|+++||+++... ...+|+.|.+.+....
T Consensus 2 ~~~iSDlH~g~~~~--------~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (256)
T cd07401 2 FVHISDIHVSSFHP--------PNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSV 73 (256)
T ss_pred EEEecccccCCcCc--------hhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCC
Confidence 78999999876432 11111 234556667789999999999996432 2467888888776543
Q ss_pred -cCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEE--EECCEEEEEEeCCCC-------
Q 046241 401 -SRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSI--EQAGVHFTVMSTEHD------- 470 (638)
Q Consensus 401 -~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsf--d~G~v~fi~LDT~~~------- 470 (638)
...|++.++||||..... +. +. ....|.++...... ...+|.+ +.|+++||+|||...
T Consensus 74 ~~~~p~~~v~GNHD~~~~~-~~------~~---~~~~~~~y~~~~~~--~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~ 141 (256)
T cd07401 74 INKEKWFDIRGNHDLFNIP-SL------DS---ENNYYRKYSATGRD--GSFSFSHTTRFGNYSFIGVDPTLFPGPKRPF 141 (256)
T ss_pred CCcceEEEeCCCCCcCCCC-Cc------cc---hhhHHHHhheecCC--CccceEEEecCCCEEEEEEcCccCCCCCCCC
Confidence 268999999999984222 10 00 01123332222111 1223333 359999999999642
Q ss_pred ---CCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccceeccc
Q 046241 471 ---WSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSV 546 (638)
Q Consensus 471 ---~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~ 546 (638)
....++|++||++.|++.. +.+++||++|+|++....... ...+ .+.++|++++|+++|+||.|.+++..|+
T Consensus 142 ~~~g~l~~~ql~wL~~~L~~~~--~~~~~IV~~HhP~~~~~~~~~-~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 142 NFFGSLDKKLLDRLEKELEKST--NSNYTIWFGHYPTSTIISPSA-KSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred ceeccCCHHHHHHHHHHHHhcc--cCCeEEEEEcccchhccCCCc-chhH-HHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 2346899999999998753 456899999999965332211 1222 3999999999999999999999986664
No 13
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.85 E-value=1.8e-19 Score=187.40 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=150.8
Q ss_pred EECCCCCCCCccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC--CCccEEEEeCCcccCCCcHHHHHHHHH
Q 046241 317 FKTPPAGGSSEVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN--GSVDSIFHIGDISYATGFLVEWDFFLH 394 (638)
Q Consensus 317 F~T~p~~~~~~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~--~~pDfvl~~GDi~y~~g~~~~wd~f~~ 394 (638)
.++.+.. .+ ++||++++|+|....... . .........++++++.+.+ .+|||||++||+++. +...+|+.+.+
T Consensus 5 ~~~~~~~-~~-~~~i~~iSD~Hl~~~~~~-~-~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~-~~~~~~~~~~~ 79 (275)
T PRK11148 5 LTLPLAG-EA-RVRILQITDTHLFADEHE-T-LLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQD-HSSEAYQHFAE 79 (275)
T ss_pred cccccCC-CC-CEEEEEEcCcccCCCCCC-c-eeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCC-CCHHHHHHHHH
Confidence 4555443 33 499999999997432210 0 0011124556666666644 479999999999964 55677888888
Q ss_pred hhhhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCC----
Q 046241 395 QISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHD---- 470 (638)
Q Consensus 395 ~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~---- 470 (638)
.++.+ .+|+++++||||..... ...+. ..+....++.+..++++||+||+...
T Consensus 80 ~l~~l--~~Pv~~v~GNHD~~~~~-------------------~~~~~--~~~~~~~~~~~~~~~~~~i~Lds~~~g~~~ 136 (275)
T PRK11148 80 GIAPL--RKPCVWLPGNHDFQPAM-------------------YSALQ--DAGISPAKHVLIGEHWQILLLDSQVFGVPH 136 (275)
T ss_pred HHhhc--CCcEEEeCCCCCChHHH-------------------HHHHh--hcCCCccceEEecCCEEEEEecCCCCCCcC
Confidence 88776 58999999999973111 11111 00001123334456699999999642
Q ss_pred CCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCC---CHHHHHHHHHHHHhC-CCeEEEEccccccceeccc
Q 046241 471 WSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSV---DNKFVDAVEPLLLDN-KVDLALFGHVHNYERTCSV 546 (638)
Q Consensus 471 ~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~---~~~~r~~l~~Ll~k~-~VdlvlsGH~H~YeRt~p~ 546 (638)
...+.+|++||++.|++.. + +..||++|||+........ .....+.|.++++++ +|+++|+||+|......
T Consensus 137 G~l~~~ql~wL~~~L~~~~--~-~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~-- 211 (275)
T PRK11148 137 GELSEYQLEWLERKLADAP--E-RHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLD-- 211 (275)
T ss_pred CEeCHHHHHHHHHHHhhCC--C-CCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhce--
Confidence 2347899999999999753 2 3455556655533322111 112356899999998 89999999999865321
Q ss_pred ccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCccCCCCCCCCCCcceeeeccccEEEEEEe-CCEEEEEEEEcCC
Q 046241 547 YKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDNADHTWSLIRISKFGYLRGNAN-KEEMKFEFVNSDT 625 (638)
Q Consensus 547 ~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~~~~~ws~~~~~~~Gy~~v~v~-~~~L~~~~~~~~d 625 (638)
..|..++++++.+..+... .... .......||..++++ ++.+..+.+...+
T Consensus 212 -----------------------~~gi~~~~~ps~~~q~~~~----~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~~~~ 263 (275)
T PRK11148 212 -----------------------WNGRRLLATPSTCVQFKPH----CTNF-TLDTVAPGWRELELHADGSLETEVHRLAD 263 (275)
T ss_pred -----------------------ECCEEEEEcCCCcCCcCCC----CCcc-ccccCCCcEEEEEEcCCCcEEEEEEEcCC
Confidence 1234456666655432110 1111 111234699999994 5567777766543
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.82 E-value=8.8e-20 Score=182.75 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=117.8
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhc-cCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVA-SRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~-~~vP~~~ 407 (638)
|+|++++|+|...... .......+++|++.+.+.+||+|+++||+++......+|+.+.+.++.+. ..+|+++
T Consensus 1 f~~~~~~D~q~~~~~~------~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~ 74 (214)
T cd07399 1 FTLAVLPDTQYYTESY------PEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSV 74 (214)
T ss_pred CEEEEecCCCcCCcCC------HHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 6899999999764321 11123456777777777899999999999976544778999999888886 6799999
Q ss_pred ecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhcc
Q 046241 408 AIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMAS 487 (638)
Q Consensus 408 v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~ 487 (638)
++||||.- +.+|+ ....+|++||++.|++
T Consensus 75 ~~GNHD~~-----------------------------------------------~~ld~----~~~~~ql~WL~~~L~~ 103 (214)
T cd07399 75 LAGNHDLV-----------------------------------------------LALEF----GPRDEVLQWANEVLKK 103 (214)
T ss_pred ECCCCcch-----------------------------------------------hhCCC----CCCHHHHHHHHHHHHH
Confidence 99999941 11222 1347999999999997
Q ss_pred ccCCCCCeEEEEeccCCccCCCCCC-------CHHHHHHHHHHHHhC-CCeEEEEccccccceec
Q 046241 488 VDRSKTPWLIFSGHRPMYSSLSSSV-------DNKFVDAVEPLLLDN-KVDLALFGHVHNYERTC 544 (638)
Q Consensus 488 ~~r~~~~w~IV~~H~P~yss~~~~~-------~~~~r~~l~~Ll~k~-~VdlvlsGH~H~YeRt~ 544 (638)
. +.+++||++|+|++....... ....++.|++|++++ +|+++|+||+|.+.+..
T Consensus 104 ~---~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~ 165 (214)
T cd07399 104 H---PDRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTT 165 (214)
T ss_pred C---CCCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEE
Confidence 4 335689999999986543221 123456788999999 79999999999998865
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.74 E-value=2.8e-17 Score=172.62 Aligned_cols=183 Identities=14% Similarity=0.243 Sum_probs=122.9
Q ss_pred HHHHHHHHHHhhCC--CccEEEEeCCcccCCCcHH--------HHHHHHHhhhhhccCcceEEecCCCccCCCCCCCCcc
Q 046241 355 LSVIKAMADEVDNG--SVDSIFHIGDISYATGFLV--------EWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVY 424 (638)
Q Consensus 355 ~~~~~~l~~~i~~~--~pDfvl~~GDi~y~~g~~~--------~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y 424 (638)
..+++.+++.+++. +|||||++||+++...... .+..+.+.++.....+|+++++||||..... ...
T Consensus 52 ~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~-~~~-- 128 (296)
T cd00842 52 WRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVN-QFP-- 128 (296)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCccc-ccC--
Confidence 45666666666655 9999999999997653221 2455666777777789999999999985332 100
Q ss_pred cCCCCCCccchhcccccc--CCCCC----CCCCeEEEE-ECCEEEEEEeCCCCC-----------CCcHHHHHHHHHHhc
Q 046241 425 ESPDSGGECGVAYETYFP--MPIPA----RDKPWYSIE-QAGVHFTVMSTEHDW-----------SENSEQYEWMKKDMA 486 (638)
Q Consensus 425 ~~~ds~ge~~~~y~~~f~--~P~~~----~~~~yYsfd-~G~v~fi~LDT~~~~-----------~~~~~Q~~WL~~~La 486 (638)
...........+...|. +|... ....||++. .++++||+|||.... ....+|++||+++|+
T Consensus 129 -~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~ 207 (296)
T cd00842 129 -PNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQ 207 (296)
T ss_pred -CcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHH
Confidence 00000010111112221 22211 135689998 899999999997421 235789999999999
Q ss_pred cccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCC--CeEEEEcccccccee
Q 046241 487 SVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNK--VDLALFGHVHNYERT 543 (638)
Q Consensus 487 ~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~--VdlvlsGH~H~YeRt 543 (638)
++.+. ...++|++|+|+........ ....+.|.+|+++|+ |.++|+||+|..+-.
T Consensus 208 ~a~~~-~~~v~I~~HiPp~~~~~~~~-~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 208 EAEQA-GEKVWIIGHIPPGVNSYDTL-ENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHC-CCeEEEEeccCCCCcccccc-hHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 87533 34578889999976543322 466789999999996 778999999998754
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.70 E-value=2.4e-17 Score=154.00 Aligned_cols=191 Identities=23% Similarity=0.237 Sum_probs=105.8
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHH-HhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFL-HQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~-~~l~~l~~~vP~~~ 407 (638)
+||+++||+|...... . . ....+.+.....++|+||++||+++.......+.... ..........|+++
T Consensus 1 ~ri~~isD~H~~~~~~--------~-~-~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (200)
T PF00149_consen 1 MRILVISDLHGGYDDD--------S-D-AFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYF 70 (200)
T ss_dssp EEEEEEEBBTTTHHHH--------C-H-HHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred CeEEEEcCCCCCCcch--------h-H-HHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhccccccc
Confidence 6999999999764211 0 1 2344555556789999999999998766554444322 12334456899999
Q ss_pred ecCCCccCCCCCCCCcccCCCCCCccchhccc--cccCC-CC-CCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHH
Q 046241 408 AIGNHERDYLGSSGSVYESPDSGGECGVAYET--YFPMP-IP-ARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKK 483 (638)
Q Consensus 408 v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~--~f~~P-~~-~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~ 483 (638)
++||||+.... .. ........ ..... .. ...............+..............+..|+..
T Consensus 71 ~~GNHD~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (200)
T PF00149_consen 71 ILGNHDYYSGN-SF----------YGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLW 139 (200)
T ss_dssp EE-TTSSHHHH-HH----------HHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHH
T ss_pred cccccccceec-cc----------cccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccc
Confidence 99999984321 00 00000000 00000 00 0000001122222222222222111222233333333
Q ss_pred HhccccCCCCCeEEEEeccCCccCCCCCC----CHHHHHHHHHHHHhCCCeEEEEcccccc
Q 046241 484 DMASVDRSKTPWLIFSGHRPMYSSLSSSV----DNKFVDAVEPLLLDNKVDLALFGHVHNY 540 (638)
Q Consensus 484 ~La~~~r~~~~w~IV~~H~P~yss~~~~~----~~~~r~~l~~Ll~k~~VdlvlsGH~H~Y 540 (638)
.+....+...+++||++|+|++....... ....++.+..++.+++|+++|+||+|.|
T Consensus 140 ~~~~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 140 LLLLLEAKNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHEEEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred cccccccccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 22222224567999999999987765432 2356788999999999999999999987
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.68 E-value=7.3e-16 Score=158.38 Aligned_cols=159 Identities=19% Similarity=0.206 Sum_probs=107.1
Q ss_pred CCCccEEEEeCCcccCCC--cHHHH----HHHHHhhhhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhcccc
Q 046241 367 NGSVDSIFHIGDISYATG--FLVEW----DFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETY 440 (638)
Q Consensus 367 ~~~pDfvl~~GDi~y~~g--~~~~w----d~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~ 440 (638)
..+||+||++||+++.+. ...+| +.|.+.+.++....|++.++||||+.+.. . . .......|+++
T Consensus 43 ~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~-~-~-------~~~~~~rf~~~ 113 (257)
T cd08163 43 QLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGN-G-V-------VLPVRQRFEKY 113 (257)
T ss_pred hcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCC-C-C-------CHHHHHHHHHH
Confidence 368999999999996532 12344 44555555443458999999999985432 0 0 00112456666
Q ss_pred ccCCCCCCCCCeEEEEECCEEEEEEeCCCC-----CCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCC----
Q 046241 441 FPMPIPARDKPWYSIEQAGVHFTVMSTEHD-----WSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSS---- 511 (638)
Q Consensus 441 f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~-----~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~---- 511 (638)
|. ...|+|++|+++||+||+..- .....+|.+||++.|+... ....+||++|+|+|......
T Consensus 114 Fg-------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~~p~ILl~H~Plyr~~~~~cg~~ 184 (257)
T cd08163 114 FG-------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKV--KSKPRILLTHVPLYRPPNTSCGPL 184 (257)
T ss_pred hC-------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccC--CCCcEEEEeccccccCCCCCCCCc
Confidence 74 235899999999999999631 2245689999999998643 23448999999998653110
Q ss_pred --C--------CHH----H-HHHHHHHHHhCCCeEEEEcccccccee
Q 046241 512 --V--------DNK----F-VDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 512 --~--------~~~----~-r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
. ... + .+.-..||++.++.+||+||+|.|-..
T Consensus 185 re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 185 RESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred cccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCcccee
Confidence 0 000 1 234457778889999999999998765
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.66 E-value=1.6e-15 Score=153.83 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=117.9
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC--CccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG--SVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~--~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
+.+++|+|.............+.+.+.++++.+.+++. +||+|+++||+++. +...+....++.++.+ ..|++++
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~-~~~~~~~~~l~~l~~l--~~~v~~V 77 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA-MKLEEAKLDLAWIDAL--PGTKVLL 77 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC-CChHHHHHHHHHHHhC--CCCeEEE
Confidence 36889999874211101112334466677776665544 99999999999953 3333344444444443 3478999
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCC-CCCeEEEEECCEEEEEEeCCC----CC------------
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPAR-DKPWYSIEQAGVHFTVMSTEH----DW------------ 471 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~-~~~yYsfd~G~v~fi~LDT~~----~~------------ 471 (638)
+||||+.... . ..+.+.+. ..+. -....++.++++.|+.++... .+
T Consensus 78 ~GNHD~~~~~--~-------------~~~~~~l~--~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~ 140 (232)
T cd07393 78 KGNHDYWWGS--A-------------SKLRKALE--ESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEED 140 (232)
T ss_pred eCCccccCCC--H-------------HHHHHHHH--hcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhH
Confidence 9999973211 0 11111111 0000 000234567889999886321 11
Q ss_pred -CCcHHHHHHHHHHhccccCC-CCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccceecccc
Q 046241 472 -SENSEQYEWMKKDMASVDRS-KTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSVY 547 (638)
Q Consensus 472 -~~~~~Q~~WL~~~La~~~r~-~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~ 547 (638)
....+|++||++.|+++... ...++|+++|+|++.... + .+.+..++++++++++|+||+|.+++..|+.
T Consensus 141 ~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~---~---~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~ 212 (232)
T cd07393 141 EKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENG---D---DSPISKLIEEYGVDICVYGHLHGVGRDRAIN 212 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCC---C---HHHHHHHHHHcCCCEEEECCCCCCccccccc
Confidence 01356999999999976422 224789999999876432 1 2467888899999999999999999987763
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.63 E-value=2.3e-15 Score=148.94 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=104.4
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHH-HHHHHHHhhhhhc-cCcceE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLV-EWDFFLHQISPVA-SRVSYM 406 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~-~wd~f~~~l~~l~-~~vP~~ 406 (638)
+||++++|+|......... .......+.+.+.+.+++.+||+||++||+++...... .++.+.+.++++. ..+|++
T Consensus 3 ~ki~~isDlH~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 3 FKILQFADLHFGEGEGTCE--GCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred eEEEEEeeecccCCCCCCC--cchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 8999999999876532100 00012345556665566789999999999998665432 3444444455443 379999
Q ss_pred EecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhc
Q 046241 407 TAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMA 486 (638)
Q Consensus 407 ~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La 486 (638)
+++||||.. ......|++||++.|+
T Consensus 81 ~~~GNHD~~-------------------------------------------------------g~l~~~ql~wL~~~l~ 105 (199)
T cd07383 81 ATFGNHDGY-------------------------------------------------------DWIRPSQIEWFKETSA 105 (199)
T ss_pred EECccCCCC-------------------------------------------------------CCCCHHHHHHHHHHHH
Confidence 999999920 0134689999999999
Q ss_pred ccc--CCCCCeEEEEeccCCccCCCC--------C--CC----HHH-HHHHHHHHHhCCCeEEEEccccccceec
Q 046241 487 SVD--RSKTPWLIFSGHRPMYSSLSS--------S--VD----NKF-VDAVEPLLLDNKVDLALFGHVHNYERTC 544 (638)
Q Consensus 487 ~~~--r~~~~w~IV~~H~P~yss~~~--------~--~~----~~~-r~~l~~Ll~k~~VdlvlsGH~H~YeRt~ 544 (638)
+.. +....+.++++|+|+...... + .+ ... .+.+..+.+..+|+++|+||+|.++...
T Consensus 106 ~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 106 ALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred HHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 863 224467899999998643210 0 01 111 2334444566799999999999987654
No 20
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.57 E-value=4.4e-14 Score=153.24 Aligned_cols=92 Identities=22% Similarity=0.381 Sum_probs=72.6
Q ss_pred CCCeEEEE-ECCEEEEEEeCCCC-----CCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCC-------HH
Q 046241 449 DKPWYSIE-QAGVHFTVMSTEHD-----WSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVD-------NK 515 (638)
Q Consensus 449 ~~~yYsfd-~G~v~fi~LDT~~~-----~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~-------~~ 515 (638)
+..||+|+ .++++||+|||... ....++|++||+++|++. +.+++||++|||++.......+ ..
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 45699999 89999999999642 235799999999999973 4567999999999865432111 12
Q ss_pred HHHHHHHHHHhC-CCeEEEEcccccccee
Q 046241 516 FVDAVEPLLLDN-KVDLALFGHVHNYERT 543 (638)
Q Consensus 516 ~r~~l~~Ll~k~-~VdlvlsGH~H~YeRt 543 (638)
..++|.++|++| +|.++|+||.|....+
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 357899999998 8999999999998754
No 21
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.56 E-value=6.7e-14 Score=136.11 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=103.5
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecC
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIG 410 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~G 410 (638)
++++||+|... ..++. ..+++.++|+||++||+++. +...+...+ +.++. ...|+++++|
T Consensus 1 i~~~sD~H~~~--------------~~~~~--~~~~~~~~D~vv~~GDl~~~-~~~~~~~~~-~~l~~--~~~p~~~v~G 60 (188)
T cd07392 1 ILAISDIHGDV--------------EKLEA--IILKAEEADAVIVAGDITNF-GGKEAAVEI-NLLLA--IGVPVLAVPG 60 (188)
T ss_pred CEEEEecCCCH--------------HHHHH--HHhhccCCCEEEECCCccCc-CCHHHHHHH-HHHHh--cCCCEEEEcC
Confidence 57899999642 11121 33456789999999999964 333344333 44443 3689999999
Q ss_pred CCccCCCCCCCCcccCCCCCCccchhccc-cccCCCCCCCCCeEEEEECCEEEEEEeCCCC------CCCcHHHHHHHHH
Q 046241 411 NHERDYLGSSGSVYESPDSGGECGVAYET-YFPMPIPARDKPWYSIEQAGVHFTVMSTEHD------WSENSEQYEWMKK 483 (638)
Q Consensus 411 NHD~~~~~~sgs~y~~~ds~ge~~~~y~~-~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~------~~~~~~Q~~WL~~ 483 (638)
|||..... ..... .+.+ .+ ..+.+++++|+.+++... ....++|++|+ +
T Consensus 61 NHD~~~~~----------------~~~~~~~~~~-----~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~ 116 (188)
T cd07392 61 NCDTPEIL----------------GLLTSAGLNL-----HG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-G 116 (188)
T ss_pred CCCCHHHH----------------HhhhcCcEec-----CC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-h
Confidence 99963111 00000 0000 11 245678899999987421 13457899998 4
Q ss_pred HhccccCCCCCeEEEEeccCCccCCCCCC--C-HHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 484 DMASVDRSKTPWLIFSGHRPMYSSLSSSV--D-NKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 484 ~La~~~r~~~~w~IV~~H~P~yss~~~~~--~-~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
.|+. ...+..|+++|+|++....... . ....+.+..++++++++++|+||+|.-.
T Consensus 117 ~l~~---~~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 117 RLNN---LLAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred hhhc---cCCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 4443 2345689999999976321110 0 1235678889999999999999999864
No 22
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.55 E-value=1e-13 Score=144.09 Aligned_cols=184 Identities=17% Similarity=0.250 Sum_probs=126.0
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
++|+.++|.|..... ......+.+++++++..+||+|+++||+++. +...+++...+.++......|++++
T Consensus 1 ~~i~~isD~H~~~~~--------~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~~~~~~~~~~~l~~~~~~~~~~~v 71 (301)
T COG1409 1 MRIAHISDLHLGALG--------VDSEELLEALLAAIEQLKPDLLVVTGDLTND-GEPEEYRRLKELLARLELPAPVIVV 71 (301)
T ss_pred CeEEEEecCcccccc--------cchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CCHHHHHHHHHHHhhccCCCceEee
Confidence 489999999987411 1235677888888888999999999999965 7788888888888855567899999
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEE-CCEEEEEEeCCCC----CCCcHHHHHHHHH
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQ-AGVHFTVMSTEHD----WSENSEQYEWMKK 483 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~-G~v~fi~LDT~~~----~~~~~~Q~~WL~~ 483 (638)
|||||..... ...+...+.... ..+..... ++++++.+|+... ...+..|++||++
T Consensus 72 pGNHD~~~~~---------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~ 132 (301)
T COG1409 72 PGNHDARVVN---------------GEAFSDQFFNRY----AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEE 132 (301)
T ss_pred CCCCcCCchH---------------HHHhhhhhcccC----cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHH
Confidence 9999974332 112222221110 01111122 6789999999753 3468999999999
Q ss_pred HhccccCCCCCeEEEEeccCCccCCCCC--CCHHHHHHHHHHHHhCC--CeEEEEcccccc
Q 046241 484 DMASVDRSKTPWLIFSGHRPMYSSLSSS--VDNKFVDAVEPLLLDNK--VDLALFGHVHNY 540 (638)
Q Consensus 484 ~La~~~r~~~~w~IV~~H~P~yss~~~~--~~~~~r~~l~~Ll~k~~--VdlvlsGH~H~Y 540 (638)
.|++........+|+++|+|+....... ........+..++..++ |+++|+||.|..
T Consensus 133 ~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 133 ALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 9997542211245776777765443221 11223456677788887 999999999987
No 23
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.55 E-value=6.5e-14 Score=142.67 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=111.3
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEec
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAI 409 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~ 409 (638)
||++++|+|..... .+....++++++.+.+.++|+|+++||++... .+...+++.+..+ ...|++.++
T Consensus 1 ki~~iSDlH~~~~~--------~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~---~~~~~~~~~l~~~-~~~pv~~v~ 68 (239)
T TIGR03729 1 KIAFSSDLHIDLNH--------FDTEEMLETLAQYLKKQKIDHLHIAGDISNDF---QRSLPFIEKLQEL-KGIKVTFNA 68 (239)
T ss_pred CEEEEEeecCCCCC--------CCHHHHHHHHHHHHHhcCCCEEEECCccccch---hhHHHHHHHHHHh-cCCcEEEEC
Confidence 58999999974211 11234567777777778899999999999542 2233444444433 468999999
Q ss_pred CCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCC-------------------
Q 046241 410 GNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHD------------------- 470 (638)
Q Consensus 410 GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~------------------- 470 (638)
||||+.... . + ..+.+.+. + ..-.+.++.+..++++|++++...+
T Consensus 69 GNHD~~~~~-~---~----------~~~~~~~~-~-~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~ 132 (239)
T TIGR03729 69 GNHDMLKDL-T---Y----------EEIESNDS-P-LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSF 132 (239)
T ss_pred CCCCCCCCC-C---H----------HHHHhccc-h-hhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcE
Confidence 999974211 0 0 01111110 0 0001122333346677777773211
Q ss_pred -------C-----CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCC-------CCCC---HHHHHHHHHHHHhCC
Q 046241 471 -------W-----SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLS-------SSVD---NKFVDAVEPLLLDNK 528 (638)
Q Consensus 471 -------~-----~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~-------~~~~---~~~r~~l~~Ll~k~~ 528 (638)
. ....+|++||++.|++.. ...+|+++|+|+..... .... ....+.|.+++++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~ 209 (239)
T TIGR03729 133 WFDRRIKRPMSDPERTAIVLKQLKKQLNQLD---NKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYE 209 (239)
T ss_pred EeecccCCCCChHHHHHHHHHHHHHHHHhcC---CCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhC
Confidence 1 014678999999998753 23488889999854211 1111 112478899999999
Q ss_pred CeEEEEccccccce
Q 046241 529 VDLALFGHVHNYER 542 (638)
Q Consensus 529 VdlvlsGH~H~YeR 542 (638)
|+++++||.|.-..
T Consensus 210 v~~~i~GH~H~~~~ 223 (239)
T TIGR03729 210 IKDVIFGHLHRRFG 223 (239)
T ss_pred CCEEEECCccCCCC
Confidence 99999999999753
No 24
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.50 E-value=3.2e-13 Score=135.54 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=120.1
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
+||++++|+|..... ....++++.+.+.+.+||+|+++||+++...... +.+.+.++.+....|++.+
T Consensus 2 ~~i~~~sDlH~~~~~----------~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~--~~~~~~l~~l~~~~~v~~v 69 (223)
T cd07385 2 LRIAHLSDLHLGPFV----------SRERLERLVEKINALKPDLVVLTGDLVDGSVDVL--ELLLELLKKLKAPLGVYAV 69 (223)
T ss_pred CEEEEEeecCCCccC----------CHHHHHHHHHHHhccCCCEEEEcCcccCCcchhh--HHHHHHHhccCCCCCEEEE
Confidence 899999999986532 1245677777777889999999999997543322 3455666666667999999
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhccc
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASV 488 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~ 488 (638)
+||||+.... ... .....+...+..- .+.+..++.++..+.++.-... ....+++.+.+++.
T Consensus 70 ~GNHD~~~~~-~~~-----------~~~~l~~~~v~~L--~~~~~~~~~~~~~i~i~G~~~~----~~~~~~~~~~~~~~ 131 (223)
T cd07385 70 LGNHDYYSGD-EEN-----------WIEALESAGITVL--RNESVEISVGGATIGIAGVDDG----LGRRPDLEKALKGL 131 (223)
T ss_pred CCCcccccCc-hHH-----------HHHHHHHcCCEEe--ecCcEEeccCCeEEEEEeccCc----cccCCCHHHHHhCC
Confidence 9999985322 000 0001010011100 1234456666655544432111 12234566666654
Q ss_pred cCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccceecccccCc--cccCCccCCCCCcccc
Q 046241 489 DRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSVYKQS--CLAMPTKDANGIDTYD 566 (638)
Q Consensus 489 ~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~~~~--~~~~~~~d~~G~~~y~ 566 (638)
.+..+.|++.|.|.+. + .+.+.++|++++||+|..|...|..... |.... +-..|. |.
T Consensus 132 --~~~~~~I~l~H~P~~~--------------~-~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~-~~~~G~--~~ 191 (223)
T cd07385 132 --DEDDPNILLAHQPDTA--------------E-EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLAR-PYDYGL--YR 191 (223)
T ss_pred --CCCCCEEEEecCCChh--------------H-HhcccCccEEEeccCCCCEEeccccccccchhhcC-cccceE--EE
Confidence 3455789999998531 1 1267799999999999999877655331 11111 112332 21
Q ss_pred CCCCCCCEEEEECCCCC
Q 046241 567 HSNYSAPVQAVIGMAGF 583 (638)
Q Consensus 567 ~~~~~gpv~iv~G~aG~ 583 (638)
..+..+||..|.|..
T Consensus 192 --~~~~~~~Vs~G~G~~ 206 (223)
T cd07385 192 --KGGSQLYVSRGLGTW 206 (223)
T ss_pred --ECCEEEEEcCCccCC
Confidence 224577777777654
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.46 E-value=5.5e-13 Score=124.70 Aligned_cols=126 Identities=21% Similarity=0.245 Sum_probs=91.2
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccC-cceEEec
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASR-VSYMTAI 409 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~-vP~~~v~ 409 (638)
|+.++|+|.+....... ......++++.+.+.+.++|+|+++||+++. +...+|+.+.+.++.+... .|++.++
T Consensus 1 il~isD~Hl~~~~~~~~----~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~v~ 75 (144)
T cd07400 1 ILHLSDLHFGPERKPEL----LALLSLLDRLLAEIKALDPDLVVITGDLTQR-GLPEEFEEAREFLDALPAPLEPVLVVP 75 (144)
T ss_pred CeEeCccCCCCCcchhH----HHHHHHHHHHHHHHhccCCCEEEECCCCCCC-CCHHHHHHHHHHHHHccccCCcEEEeC
Confidence 57899999876432110 0111124456677778899999999999975 4566787777777776543 6999999
Q ss_pred CCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhcccc
Q 046241 410 GNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVD 489 (638)
Q Consensus 410 GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~~ 489 (638)
||||.
T Consensus 76 GNHD~--------------------------------------------------------------------------- 80 (144)
T cd07400 76 GNHDV--------------------------------------------------------------------------- 80 (144)
T ss_pred CCCeE---------------------------------------------------------------------------
Confidence 99981
Q ss_pred CCCCCeEEEEeccCCccCCCCCC-CHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 490 RSKTPWLIFSGHRPMYSSLSSSV-DNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 490 r~~~~w~IV~~H~P~yss~~~~~-~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
|+++|+|++....... ....++.+.+++.+++++++++||+|.....
T Consensus 81 -------iv~~Hhp~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~ 128 (144)
T cd07400 81 -------IVVLHHPLVPPPGSGRERLLDAGDALKLLAEAGVDLVLHGHKHVPYVG 128 (144)
T ss_pred -------EEEecCCCCCCCccccccCCCHHHHHHHHHHcCCCEEEECCCCCcCee
Confidence 8889999976543211 1114678999999999999999999997753
No 26
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.45 E-value=2.4e-12 Score=129.35 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=109.7
Q ss_pred cEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
+.|+++++|+|.. ...++++.+.+++.++|+|+++||+++......++..+++.+..+ .+|+++
T Consensus 4 ~~kIl~iSDiHgn--------------~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l--~~pv~~ 67 (224)
T cd07388 4 VRYVLATSNPKGD--------------LEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA--HLPTFY 67 (224)
T ss_pred eeEEEEEEecCCC--------------HHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc--CCceEE
Confidence 4799999999942 456777777776688999999999997532355555666655543 479999
Q ss_pred ecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCC-CCCCCeEEEEE-CCEEEEEEeCCCCC--CCcHHHH----H
Q 046241 408 AIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIP-ARDKPWYSIEQ-AGVHFTVMSTEHDW--SENSEQY----E 479 (638)
Q Consensus 408 v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~-~~~~~yYsfd~-G~v~fi~LDT~~~~--~~~~~Q~----~ 479 (638)
++||||..... . ....|......|.. .-... ...+ |+++|+.++..... ...++|. +
T Consensus 68 V~GNhD~~v~~----~---------l~~~~~~~~~~p~~~~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~ 132 (224)
T cd07388 68 VPGPQDAPLWE----Y---------LREAYNAELVHPEIRNVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPA 132 (224)
T ss_pred EcCCCChHHHH----H---------HHHHhcccccCccceecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhh
Confidence 99999962000 0 00011100001110 00111 2345 56999999865432 2345552 5
Q ss_pred HHHH-HhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcccc
Q 046241 480 WMKK-DMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVH 538 (638)
Q Consensus 480 WL~~-~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H 538 (638)
||.+ .|+...+...+..|+++|+|++..+.. ....+.+..++++++..+++|||.|
T Consensus 133 ~~~~~~l~~~~~~~~~~~VLv~H~PP~g~g~~---h~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 133 WVAEYRLKALWELKDYRKVFLFHTPPYHKGLN---EQGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hHHHHHHHHHHhCCCCCeEEEECCCCCCCCCC---ccCHHHHHHHHHHhCCCEEEEcCCc
Confidence 6433 222221123446899999999987421 1235677889999999999999999
No 27
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.42 E-value=5.6e-12 Score=135.69 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=66.9
Q ss_pred CCeEEEE-ECCE--EEEEEeCCCC-----------CCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCC---
Q 046241 450 KPWYSIE-QAGV--HFTVMSTEHD-----------WSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSV--- 512 (638)
Q Consensus 450 ~~yYsfd-~G~v--~fi~LDT~~~-----------~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~--- 512 (638)
..||+|+ .|++ |||+||+... ....++|++||+++|+.+. .+.+++|++.|+|+.+......
T Consensus 292 ~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi~t~gi~~md~w 370 (492)
T TIGR03768 292 FACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPIAVSPIGSEMEW 370 (492)
T ss_pred cceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCcccCCccchhhh
Confidence 3599999 5855 9999998641 1247999999999999864 2567888888888875321110
Q ss_pred ------------CHHHHHHHHHHHHhC-CCeEEEEccccccce
Q 046241 513 ------------DNKFVDAVEPLLLDN-KVDLALFGHVHNYER 542 (638)
Q Consensus 513 ------------~~~~r~~l~~Ll~k~-~VdlvlsGH~H~YeR 542 (638)
+.....+|..+|.+| +|.++|+||.|...-
T Consensus 371 ~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v 413 (492)
T TIGR03768 371 WLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTV 413 (492)
T ss_pred ccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccccc
Confidence 011124799999999 798999999997543
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.40 E-value=1.2e-12 Score=130.99 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=115.3
Q ss_pred EEEEEecCCCCCCCCCcccc-cCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCC-cHHHHHHHHHhhhhhc-cCcceE
Q 046241 330 RFLTYGDMGKAPLDDSAEHY-IQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATG-FLVEWDFFLHQISPVA-SRVSYM 406 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~-~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g-~~~~wd~f~~~l~~l~-~~vP~~ 406 (638)
||++++|+|.+......... ........++++.+.+.+.++|+|+++||+++... ....+..+.+.++.+. ..+|++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 68999999998643211100 01123567788888888889999999999997543 2345666667776654 479999
Q ss_pred EecCCCccCCCCCCCCcccCCCCCCccchhccccccC--CCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHH
Q 046241 407 TAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPM--PIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKD 484 (638)
Q Consensus 407 ~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~--P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~ 484 (638)
+++||||..... . ... . ...+...... ...........++.+++.|+.++..... ....+.++++..
T Consensus 81 ~~~GNHD~~~~~-~--~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~ 149 (223)
T cd00840 81 IIAGNHDSPSRL-G--ALS------P-LLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELR 149 (223)
T ss_pred EecCCCCCcccc-c--ccc------c-hHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHH
Confidence 999999985322 0 000 0 0001110000 0000011122334456778888764221 123344454555
Q ss_pred hccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 485 MASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 485 La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
+... .+....|+++|+|+.......... .......+...++|++++||.|..+.
T Consensus 150 ~~~~--~~~~~~Il~~H~~~~~~~~~~~~~--~~~~~~~~~~~~~d~v~~GH~H~~~~ 203 (223)
T cd00840 150 PRPL--DPDDFNILLLHGGVAGAGPSDSER--APFVPEALLPAGFDYVALGHIHRPQI 203 (223)
T ss_pred hhcc--CCCCcEEEEEeeeeecCCCCcccc--cccCcHhhcCcCCCEEECCCcccCee
Confidence 5543 345678999999986544221111 12334456678999999999999875
No 29
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.40 E-value=5.1e-12 Score=131.22 Aligned_cols=169 Identities=16% Similarity=0.144 Sum_probs=101.5
Q ss_pred cEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
++|+++++|+|.+... ....++++++.+++.+||+|+++||+++.. ....++.+.+.++.+.+..|+++
T Consensus 49 ~~rI~~lSDlH~~~~~----------~~~~l~~~v~~i~~~~pDlVli~GD~~d~~-~~~~~~~~~~~L~~L~~~~pv~~ 117 (271)
T PRK11340 49 PFKILFLADLHYSRFV----------PLSLISDAIALGIEQKPDLILLGGDYVLFD-MPLNFSAFSDVLSPLAECAPTFA 117 (271)
T ss_pred CcEEEEEcccCCCCcC----------CHHHHHHHHHHHHhcCCCEEEEccCcCCCC-ccccHHHHHHHHHHHhhcCCEEE
Confidence 4999999999975422 134566777777788999999999999622 22345566666777766789999
Q ss_pred ecCCCccCCCCCCCCcccCCCCCCccchhccccc---cCCCCCCCCCeEEEEECC--EEEEEEeCCCCCCCcHHHHHHHH
Q 046241 408 AIGNHERDYLGSSGSVYESPDSGGECGVAYETYF---PMPIPARDKPWYSIEQAG--VHFTVMSTEHDWSENSEQYEWMK 482 (638)
Q Consensus 408 v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f---~~P~~~~~~~yYsfd~G~--v~fi~LDT~~~~~~~~~Q~~WL~ 482 (638)
++||||+.... .. ...+.+.+ .+.- -.+....+..++ +.++.++.... +... ..
T Consensus 118 V~GNHD~~~~~-~~------------~~~~~~~l~~~gi~l--L~n~~~~i~~~~~~i~i~G~~d~~~---~~~~---~~ 176 (271)
T PRK11340 118 CFGNHDRPVGT-EK------------NHLIGETLKSAGITV--LFNQATVIATPNRQFELVGTGDLWA---GQCK---PP 176 (271)
T ss_pred ecCCCCcccCc-cc------------hHHHHHHHHhcCcEE--eeCCeEEEeeCCcEEEEEEecchhc---cCCC---hh
Confidence 99999974211 00 00011111 0000 012344455544 55566653211 1100 11
Q ss_pred HHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccceeccccc
Q 046241 483 KDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSVYK 548 (638)
Q Consensus 483 ~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~~ 548 (638)
+.+++ ....|++.|.|-+ .+.+.+.++||+|+||+|.-|-..|..+
T Consensus 177 ~~~~~-----~~~~IlL~H~P~~---------------~~~~~~~~~dL~lsGHTHGGQi~lP~~~ 222 (271)
T PRK11340 177 PASEA-----NLPRLVLAHNPDS---------------KEVMRDEPWDLMLCGHTHGGQLRVPLVG 222 (271)
T ss_pred HhcCC-----CCCeEEEEcCCCh---------------hHhhccCCCCEEEeccccCCeEEccccC
Confidence 22221 3357889999953 1234567899999999999998767543
No 30
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.36 E-value=1.3e-12 Score=104.64 Aligned_cols=61 Identities=43% Similarity=0.700 Sum_probs=41.0
Q ss_pred CCCEEEEECCCCCccCCCCCCCCCCcceeeeccccEEEEEE-eCCEEEEEEEEcCCCcEEEEE
Q 046241 571 SAPVQAVIGMAGFTLDKFPDNADHTWSLIRISKFGYLRGNA-NKEEMKFEFVNSDTREVEDSF 632 (638)
Q Consensus 571 ~gpv~iv~G~aG~~~~~~~~~~~~~ws~~~~~~~Gy~~v~v-~~~~L~~~~~~~~dG~v~D~f 632 (638)
++|||||+|+||+.++.+..+ +++|+++|..+|||.+|++ |.++|++||+.+.+|+|+|+|
T Consensus 1 kapVhiv~G~aG~~l~~~~~~-~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGLDPFPYP-PPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSVLDEF 62 (62)
T ss_dssp TS-EEEEE--S-T----B-SS---TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T-CEE-
T ss_pred CCCEEEEECcCCCCcccccCC-CCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcEecCC
Confidence 379999999999988887766 7999999999999999996 899999999999999999998
No 31
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.34 E-value=6.6e-12 Score=120.51 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=88.5
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecC
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIG 410 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~G 410 (638)
|+++||+|...... . ..+.+.+...++|+++++||+++.. ...++.. .........|+++++|
T Consensus 1 ~~~iSDlH~~~~~~----------~---~~~~~~~~~~~~d~li~~GDi~~~~-~~~~~~~---~~~~~~~~~~v~~v~G 63 (166)
T cd07404 1 IQYLSDLHLEFEDN----------L---ADLLNFPIAPDADILVLAGDIGYLT-DAPRFAP---LLLALKGFEPVIYVPG 63 (166)
T ss_pred CceEccccccCccc----------c---ccccccCCCCCCCEEEECCCCCCCc-chHHHHH---HHHhhcCCccEEEeCC
Confidence 57899999764321 0 0111334557899999999999643 3333332 2223345789999999
Q ss_pred CCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCC-cHHHHHHHHHHhcccc
Q 046241 411 NHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSE-NSEQYEWMKKDMASVD 489 (638)
Q Consensus 411 NHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~-~~~Q~~WL~~~La~~~ 489 (638)
|||+. +.|+...-..++.. .+++.+|+.++++
T Consensus 64 NHD~~--------------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~--- 96 (166)
T cd07404 64 NHEFY--------------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR--- 96 (166)
T ss_pred CcceE--------------------------------------------EEEEeeecccccCccchHHHHhCCCCCC---
Confidence 99962 12222211111111 2244555555544
Q ss_pred CCCCCeEEEEeccCCccCCCCC------CCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 490 RSKTPWLIFSGHRPMYSSLSSS------VDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 490 r~~~~w~IV~~H~P~yss~~~~------~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
+.+||++|+|+....... .+...++.+..++++++|+++++||+|....
T Consensus 97 ----~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~ 151 (166)
T cd07404 97 ----GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFD 151 (166)
T ss_pred ----CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccce
Confidence 347999999997654211 1234566688888999999999999998753
No 32
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.21 E-value=1.4e-09 Score=112.17 Aligned_cols=212 Identities=14% Similarity=0.159 Sum_probs=113.2
Q ss_pred cEEEEEEecCCCCCCCCCcccccCC------ChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhh-c
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQP------GSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPV-A 400 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~p------g~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l-~ 400 (638)
.||++.++|+|.+......-...-| ...++..-|.+.++.++||||+++||+++.......-..+++.++|. .
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~ 132 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAID 132 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhh
Confidence 4999999999998652211011111 13455555666667899999999999998754443334455666665 4
Q ss_pred cCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccc-cccCCCCCC-----CCCeEEE-EEC----------CEEEE
Q 046241 401 SRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYET-YFPMPIPAR-----DKPWYSI-EQA----------GVHFT 463 (638)
Q Consensus 401 ~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~-~f~~P~~~~-----~~~yYsf-d~G----------~v~fi 463 (638)
.++||.+++||||-.... +.... .+.. ...+|.- .+. |..+. +...|-. .+| -..++
T Consensus 133 ~~IPwA~~lGNHDdes~l-tr~ql--~~~i--~~lP~s~~~v~-p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~sv~~ly 206 (379)
T KOG1432|consen 133 RKIPWAAVLGNHDDESDL-TRLQL--MKFI--SKLPYSLSQVN-PPDGHMYIIDGFGNYNLQIEGAIDSELENKSVFNLY 206 (379)
T ss_pred cCCCeEEEeccccccccc-CHHHH--HHHH--hcCCCccccCC-CcccceeeeecccceEEEeccCCCcccccCceeeEE
Confidence 799999999999964322 00000 0000 0000000 000 00000 0000100 011 12345
Q ss_pred EEeCCCCC----------CCcHHHHHHHHHHhcc---ccCCCCC-eEEEEeccCCc--cCCCC-----CC------CHHH
Q 046241 464 VMSTEHDW----------SENSEQYEWMKKDMAS---VDRSKTP-WLIFSGHRPMY--SSLSS-----SV------DNKF 516 (638)
Q Consensus 464 ~LDT~~~~----------~~~~~Q~~WL~~~La~---~~r~~~~-w~IV~~H~P~y--ss~~~-----~~------~~~~ 516 (638)
+||+..+- ...+.|.+||+..-.+ .+..-.| --.++.|.|+- ..-.. +. ....
T Consensus 207 fld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~~~~~~~ 286 (379)
T KOG1432|consen 207 FLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEGVSASKH 286 (379)
T ss_pred EEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeecccccccc
Confidence 56654321 2367899999987732 1112223 35677899973 22111 10 1122
Q ss_pred HHHHHHHHH-hCCCeEEEEccccccceecc
Q 046241 517 VDAVEPLLL-DNKVDLALFGHVHNYERTCS 545 (638)
Q Consensus 517 r~~l~~Ll~-k~~VdlvlsGH~H~YeRt~p 545 (638)
...+...|. ..+|+.|++||+|...--++
T Consensus 287 ~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~ 316 (379)
T KOG1432|consen 287 NSGFLTTLVNRGNVKGVFCGHDHVNDFCGE 316 (379)
T ss_pred ccHHHHHHHhccCcceEEeccccccceecc
Confidence 344555565 77999999999999876443
No 33
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.17 E-value=5.3e-10 Score=105.28 Aligned_cols=124 Identities=17% Similarity=0.243 Sum_probs=75.0
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
+||+++||+|... ..++++++.+ .++|+|+++||++.. .++.+.++.+ |++++
T Consensus 1 Mki~~~sD~H~~~--------------~~~~~~~~~~--~~~d~vi~~GDi~~~-------~~~~~~~~~~----~~~~v 53 (156)
T PF12850_consen 1 MKIAVISDLHGNL--------------DALEAVLEYI--NEPDFVIILGDIFDP-------EEVLELLRDI----PVYVV 53 (156)
T ss_dssp EEEEEEE--TTTH--------------HHHHHHHHHH--TTESEEEEES-SCSH-------HHHHHHHHHH----EEEEE
T ss_pred CEEEEEeCCCCCh--------------hHHHHHHHHh--cCCCEEEECCCchhH-------HHHHHHHhcC----CEEEE
Confidence 6999999999742 3356777776 469999999999852 4445555443 99999
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhccc
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASV 488 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~ 488 (638)
.||||... +...... . . +.+.+..
T Consensus 54 ~GNHD~~~--------------------~~~~~~~------~-~----------------------------~~~~~~~- 77 (156)
T PF12850_consen 54 RGNHDNWA--------------------FPNENDE------E-Y----------------------------LLDALRL- 77 (156)
T ss_dssp --CCHSTH--------------------HHSEECT------C-S----------------------------SHSEEEE-
T ss_pred eCCccccc--------------------chhhhhc------c-c----------------------------cccceee-
Confidence 99999521 1110000 0 0 1111110
Q ss_pred cCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 489 DRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 489 ~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
.-....|++.|...+... ...+.+..++...+++++++||.|.....
T Consensus 78 --~~~~~~i~~~H~~~~~~~------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~ 124 (156)
T PF12850_consen 78 --TIDGFKILLSHGHPYDVQ------WDPAELREILSRENVDLVLHGHTHRPQVF 124 (156)
T ss_dssp --EETTEEEEEESSTSSSST------TTHHHHHHHHHHTTSSEEEESSSSSEEEE
T ss_pred --eecCCeEEEECCCCcccc------cChhhhhhhhcccCCCEEEcCCcccceEE
Confidence 112457888888776532 11335667788999999999999998764
No 34
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.07 E-value=7.5e-10 Score=99.60 Aligned_cols=117 Identities=23% Similarity=0.189 Sum_probs=81.8
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecCC
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIGN 411 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~GN 411 (638)
+++||+|...... .. .. ......+.++|+|+++||+++.... ..+..+...........|++.++||
T Consensus 1 ~~~gD~h~~~~~~----------~~-~~-~~~~~~~~~~~~vi~~GD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~GN 67 (131)
T cd00838 1 AVISDIHGNLEAL----------EA-VL-EAALAAAEKPDFVLVLGDLVGDGPD-PEEVLAAALALLLLLGIPVYVVPGN 67 (131)
T ss_pred CeeecccCCccch----------HH-HH-HHHHhcccCCCEEEECCcccCCCCC-chHHHHHHHHHhhcCCCCEEEeCCC
Confidence 4689999764321 00 00 0234466899999999999976543 3333333233334568999999999
Q ss_pred CccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhccccCC
Q 046241 412 HERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRS 491 (638)
Q Consensus 412 HD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~~r~ 491 (638)
||
T Consensus 68 HD------------------------------------------------------------------------------ 69 (131)
T cd00838 68 HD------------------------------------------------------------------------------ 69 (131)
T ss_pred ce------------------------------------------------------------------------------
Confidence 97
Q ss_pred CCCeEEEEeccCCccCCCCCCCH--HHHHHHHHHHHhCCCeEEEEccccccceec
Q 046241 492 KTPWLIFSGHRPMYSSLSSSVDN--KFVDAVEPLLLDNKVDLALFGHVHNYERTC 544 (638)
Q Consensus 492 ~~~w~IV~~H~P~yss~~~~~~~--~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~ 544 (638)
|++.|.|++......... ..++.+..++.+.+++++|+||.|.+.+..
T Consensus 70 -----i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 -----ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred -----EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 888899987665332221 147788899999999999999999999864
No 35
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.98 E-value=4.7e-09 Score=109.29 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=56.5
Q ss_pred ccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceE
Q 046241 327 EVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYM 406 (638)
Q Consensus 327 ~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~ 406 (638)
..++++.++|+|..... ....+.+..+.+..||+|+.+||+++. .....++...+.++++.+..+++
T Consensus 43 ~~~~iv~lSDlH~~~~~------------~~~~~~~~~i~~~~~DlivltGD~~~~-~~~~~~~~~~~~L~~L~~~~gv~ 109 (284)
T COG1408 43 QGLKIVQLSDLHSLPFR------------EEKLALLIAIANELPDLIVLTGDYVDG-DRPPGVAALALFLAKLKAPLGVF 109 (284)
T ss_pred CCeEEEEeehhhhchhh------------HHHHHHHHHHHhcCCCEEEEEeeeecC-CCCCCHHHHHHHHHhhhccCCEE
Confidence 34999999999986532 222334444456677999999999974 22344566777788888899999
Q ss_pred EecCCCccCC
Q 046241 407 TAIGNHERDY 416 (638)
Q Consensus 407 ~v~GNHD~~~ 416 (638)
++.||||+..
T Consensus 110 av~GNHd~~~ 119 (284)
T COG1408 110 AVLGNHDYGV 119 (284)
T ss_pred EEeccccccc
Confidence 9999999854
No 36
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.97 E-value=5.7e-09 Score=98.78 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=41.4
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEec
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAI 409 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~ 409 (638)
|++++||+|.. ...++++.+.+++ +|.|+++||+++.... .. +....|++.+.
T Consensus 1 ~i~~isD~H~~--------------~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~-~~----------~~~~~~~~~V~ 53 (155)
T cd00841 1 KIGVISDTHGS--------------LELLEKALELFGD--VDLIIHAGDVLYPGPL-NE----------LELKAPVIAVR 53 (155)
T ss_pred CEEEEecCCCC--------------HHHHHHHHHHhcC--CCEEEECCcccccccc-ch----------hhcCCcEEEEe
Confidence 58999999953 2345566666533 9999999999864321 11 23467899999
Q ss_pred CCCcc
Q 046241 410 GNHER 414 (638)
Q Consensus 410 GNHD~ 414 (638)
||||.
T Consensus 54 GNhD~ 58 (155)
T cd00841 54 GNCDG 58 (155)
T ss_pred CCCCC
Confidence 99996
No 37
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.95 E-value=2.6e-08 Score=100.69 Aligned_cols=174 Identities=18% Similarity=0.238 Sum_probs=92.9
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
+|++++||+|.... .. ..+.+++.+||+|+++||++... ..+.+.+..+ ..|++++
T Consensus 1 ~rIa~isDiHg~~~------------~~----~~~~l~~~~pD~Vl~~GDi~~~~------~~~~~~l~~l--~~p~~~V 56 (238)
T cd07397 1 LRIAIVGDVHGQWD------------LE----DIKALHLLQPDLVLFVGDFGNES------VQLVRAISSL--PLPKAVI 56 (238)
T ss_pred CEEEEEecCCCCch------------HH----HHHHHhccCCCEEEECCCCCcCh------HHHHHHHHhC--CCCeEEE
Confidence 58999999996421 01 12234556899999999998431 1233333333 4789999
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCC---eEEEEECCEEEEEEeCCCC---------------
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKP---WYSIEQAGVHFTVMSTEHD--------------- 470 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~---yYsfd~G~v~fi~LDT~~~--------------- 470 (638)
+||||..+.. . + ... ...+.+....- +.. |-..++....+.++.++-.
T Consensus 57 ~GNHD~~~~~-~---~---~~k---~~~l~~~L~~l----g~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~ 122 (238)
T cd07397 57 LGNHDAWYDA-T---F---RKK---GDRVQEQLELL----GDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKA 122 (238)
T ss_pred cCCCcccccc-c---c---cch---HHHHHHHHHHh----CCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHH
Confidence 9999985432 0 0 000 00111111100 001 1111222223333333310
Q ss_pred -C--CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCC---------------CCCCCHHHHHHHHHHHHhCCCeEE
Q 046241 471 -W--SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSL---------------SSSVDNKFVDAVEPLLLDNKVDLA 532 (638)
Q Consensus 471 -~--~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~---------------~~~~~~~~r~~l~~Ll~k~~Vdlv 532 (638)
+ ..-.+-++.+.+.++.++ ...+ .|++.|.++...+ ...+++++.+++..+-..-.++++
T Consensus 123 ~fgi~s~~eA~~~ive~~~~~~-~~~~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~ 200 (238)
T cd07397 123 VYGVISLEESAQRIIAAAKKAP-PDLP-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLV 200 (238)
T ss_pred HhCCCCHHHHHHHHHHHhhhcC-CCCC-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEE
Confidence 0 112233444444443322 2233 6888999986553 234567888888766545568999
Q ss_pred EEccccccce
Q 046241 533 LFGHVHNYER 542 (638)
Q Consensus 533 lsGH~H~YeR 542 (638)
++||.|.--|
T Consensus 201 ~fGH~H~~l~ 210 (238)
T cd07397 201 VFGHMHHRLR 210 (238)
T ss_pred EeCCccCccc
Confidence 9999998644
No 38
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.95 E-value=2.5e-09 Score=103.51 Aligned_cols=60 Identities=17% Similarity=0.373 Sum_probs=41.4
Q ss_pred HHHHHHHHhhCCCccEEEEeCCcccCCCc--HHHHHHHHHhhhhhc-------cCcceEEecCCCccCC
Q 046241 357 VIKAMADEVDNGSVDSIFHIGDISYATGF--LVEWDFFLHQISPVA-------SRVSYMTAIGNHERDY 416 (638)
Q Consensus 357 ~~~~l~~~i~~~~pDfvl~~GDi~y~~g~--~~~wd~f~~~l~~l~-------~~vP~~~v~GNHD~~~ 416 (638)
..+.+.+.+.+.+||+|+++||+++.... ..+|.+..+.++.+. ..+|++.++||||...
T Consensus 33 ~~~~~~~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 33 MRRAFKTALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 33444455567899999999999975432 245665555444432 2689999999999853
No 39
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.94 E-value=1.2e-07 Score=92.43 Aligned_cols=171 Identities=13% Similarity=0.107 Sum_probs=98.6
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEec
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAI 409 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~ 409 (638)
+++++||+|.+.... ...+.+.+.++..++|.|+|+||+++ ...+ +.++.+ ..|++.+.
T Consensus 1 ~i~viSDtHl~~~~~-----------~~~~~~~~~~~~~~~d~iih~GDi~~----~~~~----~~l~~~--~~~~~~V~ 59 (178)
T cd07394 1 LVLVIGDLHIPHRAS-----------DLPAKFKKLLVPGKIQHVLCTGNLCS----KETY----DYLKTI--APDVHIVR 59 (178)
T ss_pred CEEEEEecCCCCCch-----------hhHHHHHHHhccCCCCEEEECCCCCC----HHHH----HHHHhh--CCceEEEE
Confidence 478999999654221 12234444444468999999999985 2222 233332 24789999
Q ss_pred CCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhcccc
Q 046241 410 GNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVD 489 (638)
Q Consensus 410 GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~~ 489 (638)
||||... .+|. ...+++++.+
T Consensus 60 GN~D~~~-------------------------~lp~------~~~~~~~g~~---------------------------- 80 (178)
T cd07394 60 GDFDENL-------------------------NYPE------TKVITVGQFK---------------------------- 80 (178)
T ss_pred CCCCccc-------------------------cCCC------cEEEEECCEE----------------------------
Confidence 9999621 1221 1234444444
Q ss_pred CCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccceecccccCccccCCccCCCCCccccCCC
Q 046241 490 RSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSN 569 (638)
Q Consensus 490 r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~~G~~~y~~~~ 569 (638)
|.+.|--.+... .. .+.+..++++.++|++++||+|......
T Consensus 81 -------i~l~HG~~~~~~---~~---~~~~~~~~~~~~~dvii~GHTH~p~~~~------------------------- 122 (178)
T cd07394 81 -------IGLIHGHQVVPW---GD---PDSLAALQRQLDVDILISGHTHKFEAFE------------------------- 122 (178)
T ss_pred -------EEEEECCcCCCC---CC---HHHHHHHHHhcCCCEEEECCCCcceEEE-------------------------
Confidence 444443221110 01 2244555667889999999999765421
Q ss_pred CCCCEEEEECCCCCccCCCCCCCCCCcceeeeccccEEEEEEeCCEEEEEEEEcCCCcE
Q 046241 570 YSAPVQAVIGMAGFTLDKFPDNADHTWSLIRISKFGYLRGNANKEEMKFEFVNSDTREV 628 (638)
Q Consensus 570 ~~gpv~iv~G~aG~~~~~~~~~~~~~ws~~~~~~~Gy~~v~v~~~~L~~~~~~~~dG~v 628 (638)
.++.+.+--|+.|....+... .....|+.++++++.+.++.+...++++
T Consensus 123 ~~g~~viNPGSv~~~~~~~~~----------~~~~syail~~~~~~~~~~~~~l~~~~~ 171 (178)
T cd07394 123 HEGKFFINPGSATGAFSPLDP----------NVIPSFVLMDIQGSKVVTYVYQLIDGEV 171 (178)
T ss_pred ECCEEEEECCCCCCCCCCCCC----------CCCCeEEEEEecCCeEEEEEEEEECCcE
Confidence 023456667777643221000 0123689999988889999988655554
No 40
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.94 E-value=3.7e-09 Score=107.95 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=95.8
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHh--hCCCccEEEEeCCcccCC-C---cHHHHHHHHHhhhhhccC
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEV--DNGSVDSIFHIGDISYAT-G---FLVEWDFFLHQISPVASR 402 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i--~~~~pDfvl~~GDi~y~~-g---~~~~wd~f~~~l~~l~~~ 402 (638)
+|+++++|+|.+.... ...+++.+.+ .+.++|+|+++||+++.- + .....+...+.++.+...
T Consensus 1 M~i~~iSDlHl~~~~~-----------~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~ 69 (241)
T PRK05340 1 MPTLFISDLHLSPERP-----------AITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS 69 (241)
T ss_pred CcEEEEeecCCCCCCh-----------hHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc
Confidence 4799999999865321 1122232222 236899999999999631 1 112234455556665543
Q ss_pred -cceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHH
Q 046241 403 -VSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWM 481 (638)
Q Consensus 403 -vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL 481 (638)
+|++.++||||..... .+.+...+..- .....++.++.++++.-.... ...+..++++
T Consensus 70 g~~v~~v~GNHD~~~~~-----------------~~~~~~g~~~l---~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~ 128 (241)
T PRK05340 70 GVPCYFMHGNRDFLLGK-----------------RFAKAAGMTLL---PDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRF 128 (241)
T ss_pred CCeEEEEeCCCchhhhH-----------------HHHHhCCCEEe---CCcEEEEECCEEEEEECCccc-ccCCHHHHHH
Confidence 8999999999973211 11111111000 012346777777776654322 1233555555
Q ss_pred HHHhccccCCCCCeEEEEeccCCccCC-------------C-C----CCCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 482 KKDMASVDRSKTPWLIFSGHRPMYSSL-------------S-S----SVDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 482 ~~~La~~~r~~~~w~IV~~H~P~yss~-------------~-~----~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
.+.++. ||...++|.+++... . . .......+.+.+++.+++++++++||.|....
T Consensus 129 r~~~r~------~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 201 (241)
T PRK05340 129 RRKVRN------PWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI 201 (241)
T ss_pred HHHHhC------HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce
Confidence 555543 122333344433211 0 0 00001135677888999999999999998764
No 41
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.93 E-value=7.5e-09 Score=101.68 Aligned_cols=179 Identities=16% Similarity=0.178 Sum_probs=97.0
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHH------------------
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWD------------------ 390 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd------------------ 390 (638)
-++++++|.+. ..+.++++.+.+.+..+|+|+++||+.-......+|.
T Consensus 6 ~kilA~s~~~g--------------~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~ 71 (255)
T PF14582_consen 6 RKILAISNFRG--------------DFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEE 71 (255)
T ss_dssp -EEEEEE--TT---------------HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHH
T ss_pred hhheeecCcch--------------HHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhh
Confidence 57899999773 4577888888888889999999999987666666777
Q ss_pred --------HHHHhhhhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEE
Q 046241 391 --------FFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHF 462 (638)
Q Consensus 391 --------~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~f 462 (638)
.|++.+..+ .+|.+++|||||-.... | ...+|....-.|.--.-..-+.+--|.+-|
T Consensus 72 ~~~~e~~~~ff~~L~~~--~~p~~~vPG~~Dap~~~-----~--------lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v 136 (255)
T PF14582_consen 72 CYDSEALDKFFRILGEL--GVPVFVVPGNMDAPERF-----F--------LREAYNAEIVTPHIHNVHESFFFWKGEYLV 136 (255)
T ss_dssp HHHHHHHHHHHHHHHCC---SEEEEE--TTS-SHHH-----H--------HHHHHHCCCC-TTEEE-CTCEEEETTTEEE
T ss_pred hhhHHHHHHHHHHHHhc--CCcEEEecCCCCchHHH-----H--------HHHHhccceeccceeeeeeeecccCCcEEE
Confidence 677777654 79999999999962100 0 001222111111100000112222234677
Q ss_pred EEEeCCCC-------CC--CcHHHHHHHHHHhccccCCCCCeEEEEeccCC-ccCC-CCCCCHHHHHHHHHHHHhCCCeE
Q 046241 463 TVMSTEHD-------WS--ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPM-YSSL-SSSVDNKFVDAVEPLLLDNKVDL 531 (638)
Q Consensus 463 i~LDT~~~-------~~--~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~-yss~-~~~~~~~~r~~l~~Ll~k~~Vdl 531 (638)
+.+..+.. +. -.....+|..+.|..++ ..-+|+++|.|+ +..+ .+.+ .+.+..++++|+.++
T Consensus 137 ~G~GGeI~~~~~~~~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~G----S~~V~dlIk~~~P~i 209 (255)
T PF14582_consen 137 AGMGGEITDDQREEEFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHVG----SAAVRDLIKTYNPDI 209 (255)
T ss_dssp EEE-SEEESSS-BCSSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTTS----BHHHHHHHHHH--SE
T ss_pred EecCccccCCCccccccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCccccc----HHHHHHHHHhcCCcE
Confidence 77665420 10 12234566667777642 334788899999 4443 2222 356788999999999
Q ss_pred EEEcccccccee
Q 046241 532 ALFGHVHNYERT 543 (638)
Q Consensus 532 vlsGH~H~YeRt 543 (638)
+|+||.|.-.-.
T Consensus 210 vl~Ghihe~~~~ 221 (255)
T PF14582_consen 210 VLCGHIHESHGK 221 (255)
T ss_dssp EEE-SSS-EE--
T ss_pred EEecccccchhh
Confidence 999999985533
No 42
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.92 E-value=7.3e-09 Score=96.01 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=76.5
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEec
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAI 409 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~ 409 (638)
||+++||+|.... .+...++|+|+++||+++. +...+++.+.+.++.+. ..++++++
T Consensus 1 ~i~~isD~H~~~~---------------------~~~~~~~D~vi~~GD~~~~-~~~~~~~~~~~~l~~~~-~~~~~~v~ 57 (135)
T cd07379 1 RFVCISDTHSRHR---------------------TISIPDGDVLIHAGDLTER-GTLEELQKFLDWLKSLP-HPHKIVIA 57 (135)
T ss_pred CEEEEeCCCCCCC---------------------cCcCCCCCEEEECCCCCCC-CCHHHHHHHHHHHHhCC-CCeEEEEE
Confidence 5899999996421 1234689999999999854 44555666666665542 22357899
Q ss_pred CCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhcccc
Q 046241 410 GNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVD 489 (638)
Q Consensus 410 GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~~ 489 (638)
||||.. . . +
T Consensus 58 GNHD~~--~------------------------------~-----------------------------------~---- 66 (135)
T cd07379 58 GNHDLT--L------------------------------D-----------------------------------P---- 66 (135)
T ss_pred CCCCCc--C------------------------------C-----------------------------------C----
Confidence 999951 0 0 1
Q ss_pred CCCCCeEEEEeccCCccCCCCCC--CHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 490 RSKTPWLIFSGHRPMYSSLSSSV--DNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 490 r~~~~w~IV~~H~P~yss~~~~~--~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
..+.|+++|.|++....... .....+.+..++++++++++++||+|...
T Consensus 67 ---~~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 67 ---EDTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred ---CCCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 12368888999976542211 11223456777788999999999999975
No 43
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.91 E-value=6.2e-09 Score=102.01 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=71.9
Q ss_pred HhhCCCccEEEEeCCcccCCCc--HHHHHHHHHhhhhh---ccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhcc
Q 046241 364 EVDNGSVDSIFHIGDISYATGF--LVEWDFFLHQISPV---ASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYE 438 (638)
Q Consensus 364 ~i~~~~pDfvl~~GDi~y~~g~--~~~wd~f~~~l~~l---~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~ 438 (638)
.+...+||+|+++||+++.+.. ..+|.+..+.+.++ ...+|++.++||||.+... . +...+....|+
T Consensus 37 a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~--~------~~~~~~v~RF~ 108 (195)
T cd08166 37 ALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEE--E------DPIESKIRRFE 108 (195)
T ss_pred HHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCC--C------CcCHHHHHHHH
Confidence 3455789999999999976542 33455444444443 2468999999999985322 0 00001112232
Q ss_pred ccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHH
Q 046241 439 TYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVD 518 (638)
Q Consensus 439 ~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~ 518 (638)
++| |++.|.|+..... .
T Consensus 109 ~~F-------------------------------------------------------i~lsH~P~~~~~~--------~ 125 (195)
T cd08166 109 KYF-------------------------------------------------------IMLSHVPLLAEGG--------Q 125 (195)
T ss_pred Hhh-------------------------------------------------------eeeeccccccccc--------H
Confidence 222 8889999875332 2
Q ss_pred HHHHHHHhCCCeEEEEcccccccee
Q 046241 519 AVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 519 ~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
.+..++.+++++++|+||.|.+...
T Consensus 126 ~~~~~~~~~~p~~Ifs~H~H~s~~~ 150 (195)
T cd08166 126 ALKHVVTDLDPDLIFSAHRHKSSIF 150 (195)
T ss_pred HHHHHHHhcCceEEEEcCccceeeE
Confidence 6677888999999999999998764
No 44
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.89 E-value=4.4e-09 Score=100.23 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=49.4
Q ss_pred EEEecCCCCCCCCCcccccC--CChHHHHHHHHHHhhCCCccEEEEeCCcccCCC--cHHHHHHHHHhhhhhc---cCcc
Q 046241 332 LTYGDMGKAPLDDSAEHYIQ--PGSLSVIKAMADEVDNGSVDSIFHIGDISYATG--FLVEWDFFLHQISPVA---SRVS 404 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~--pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g--~~~~wd~f~~~l~~l~---~~vP 404 (638)
++++|+|....... ...+ .....+.+.+.+.+++.+||+|+++||++++.. ...+|..+...+..+. ...|
T Consensus 1 ~~isD~HL~~~~~~--~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (156)
T cd08165 1 MFLADTHLLGSILG--HWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLP 78 (156)
T ss_pred CccccchhcCCccc--HHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCe
Confidence 36789997432210 0000 001123334555566789999999999997542 2345655555444443 2589
Q ss_pred eEEecCCCccC
Q 046241 405 YMTAIGNHERD 415 (638)
Q Consensus 405 ~~~v~GNHD~~ 415 (638)
++.++||||..
T Consensus 79 i~~v~GNHD~~ 89 (156)
T cd08165 79 LHVVVGNHDIG 89 (156)
T ss_pred EEEEcCCCCcC
Confidence 99999999973
No 45
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.81 E-value=4.6e-07 Score=89.48 Aligned_cols=174 Identities=17% Similarity=0.222 Sum_probs=104.3
Q ss_pred cEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCC-CcHHHHHHHHHhhhhhc-cCcce
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYAT-GFLVEWDFFLHQISPVA-SRVSY 405 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~-g~~~~wd~f~~~l~~l~-~~vP~ 405 (638)
.+|+++++|+|.. ...++++.+.++..++|+++.+||++|.. +...+-.+-.. ++.+. ..+|+
T Consensus 3 ~mkil~vtDlHg~--------------~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~-~e~l~~~~~~v 67 (226)
T COG2129 3 KMKILAVTDLHGS--------------EDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNK-LEALKELGIPV 67 (226)
T ss_pred cceEEEEeccccc--------------hHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhH-HHHHHhcCCeE
Confidence 3899999999964 34556676666667999999999999432 22211111100 33333 57999
Q ss_pred EEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCC--CC----CCcHHH-H
Q 046241 406 MTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEH--DW----SENSEQ-Y 478 (638)
Q Consensus 406 ~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~--~~----~~~~~Q-~ 478 (638)
++++||-|-..-. ...+.....-. + -..+.|++.|+.+--.. .+ ...+++ +
T Consensus 68 ~avpGNcD~~~v~-----------------~~l~~~~~~v~---~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~ 125 (226)
T COG2129 68 LAVPGNCDPPEVI-----------------DVLKNAGVNVH---G--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIY 125 (226)
T ss_pred EEEcCCCChHHHH-----------------HHHHhcccccc---c--ceEEecCcEEEEecccCCCCCCCccccCHHHHH
Confidence 9999998842110 00000111100 1 36778888888754321 11 122332 3
Q ss_pred HHHHHHhccccCCCCCeEEEEeccCCccCCCCC--C-CHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 479 EWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSS--V-DNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 479 ~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~--~-~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
.-|++-+...+ .+-.|+++|.|+|...... + .....+.+.+++++.++-+.++||.|-+.
T Consensus 126 s~l~~~v~~~~---~~~~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~ 188 (226)
T COG2129 126 SKLKSLVKKAD---NPVNILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESR 188 (226)
T ss_pred HHHHHHHhccc---CcceEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccc
Confidence 44444444432 1223999999999766331 1 22346788899999999999999999854
No 46
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.81 E-value=4.1e-07 Score=99.24 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=56.7
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCc-HHHHHHHHHhhhh---------
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGF-LVEWDFFLHQISP--------- 398 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~-~~~wd~f~~~l~~--------- 398 (638)
+||++++|+|.+..... .........+++++++.+.+.++|+||++||+.+.... ......+++.++.
T Consensus 4 mKIlh~SD~HlG~~~~~--~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 4 IRILVSTDNHVGYGEND--PVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred eEEEEEcCCCCCCccCC--chhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 99999999998743211 11112245677888888888999999999999976432 2222233333332
Q ss_pred ------------------h-------ccCcceEEecCCCcc
Q 046241 399 ------------------V-------ASRVSYMTAIGNHER 414 (638)
Q Consensus 399 ------------------l-------~~~vP~~~v~GNHD~ 414 (638)
+ ...+|++++.||||.
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~ 122 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDD 122 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCC
Confidence 0 136999999999996
No 47
>PRK09453 phosphodiesterase; Provisional
Probab=98.79 E-value=3e-07 Score=89.75 Aligned_cols=70 Identities=13% Similarity=0.176 Sum_probs=47.4
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcH-----HHHHHHHHhhhhhccCc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL-----VEWDFFLHQISPVASRV 403 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~-----~~wd~f~~~l~~l~~~v 403 (638)
+|++++||+|.. ...++++.+.+++.++|.|+++||+++..... ...++..+.++.+ ..
T Consensus 1 mri~viSD~Hg~--------------~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 64 (182)
T PRK09453 1 MKLMFASDTHGS--------------LPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY--AD 64 (182)
T ss_pred CeEEEEEeccCC--------------HHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhc--CC
Confidence 589999999943 23456677767678999999999998532210 0123334444432 35
Q ss_pred ceEEecCCCcc
Q 046241 404 SYMTAIGNHER 414 (638)
Q Consensus 404 P~~~v~GNHD~ 414 (638)
+++.+.||||.
T Consensus 65 ~v~~V~GNhD~ 75 (182)
T PRK09453 65 KIIAVRGNCDS 75 (182)
T ss_pred ceEEEccCCcc
Confidence 89999999996
No 48
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.76 E-value=8.9e-08 Score=90.44 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=99.2
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC--CCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN--GSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYM 406 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~--~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~ 406 (638)
+++..++|+|...........+.+++...-++|.+.... ..-|.|+..|||+.+....+.- .=++.+..+. .+ -+
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~-~Dl~~i~~LP-G~-K~ 77 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAE-EDLRFIGDLP-GT-KY 77 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhh-hhhhhhhcCC-Cc-EE
Confidence 367788888876544322222333333333444443221 3458999999999887543322 2233444432 22 36
Q ss_pred EecCCCccCCCCCCCCcccCCCCCCccchhccc-cccCCCCCCCCCeEEEEECCEEEEEEe---CC-CCCCCcHHH----
Q 046241 407 TAIGNHERDYLGSSGSVYESPDSGGECGVAYET-YFPMPIPARDKPWYSIEQAGVHFTVMS---TE-HDWSENSEQ---- 477 (638)
Q Consensus 407 ~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~-~f~~P~~~~~~~yYsfd~G~v~fi~LD---T~-~~~~~~~~Q---- 477 (638)
.+.||||+.+.. -+.. ...+.. .|.+ .-.|.++++.++..- +- .++.+-++|
T Consensus 78 m~rGNHDYWw~s--~skl---------~n~lp~~l~~~--------n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki 138 (230)
T COG1768 78 MIRGNHDYWWSS--ISKL---------NNALPPILFYL--------NNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKI 138 (230)
T ss_pred EEecCCccccch--HHHH---------HhhcCchHhhh--------ccceeEeeEEEEEeecccCCCCCcCccchhHHHH
Confidence 689999997643 1100 001100 0000 012455554443322 11 112222233
Q ss_pred ----HHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 478 ----YEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 478 ----~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
+.-|+..+.++-++...-.|||.|+|+++.....+ .+.+++++++|+.++.||.|.-.|-
T Consensus 139 ~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~t~~------~~sevlee~rv~~~lyGHlHgv~~p 202 (230)
T COG1768 139 FLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDGTPG------PFSEVLEEGRVSKCLYGHLHGVPRP 202 (230)
T ss_pred HHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCCCCc------chHHHHhhcceeeEEeeeccCCCCC
Confidence 23333322222234455589999999998765443 4667788999999999999998873
No 49
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.74 E-value=2.8e-07 Score=87.76 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=40.9
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC-CccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG-SVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~-~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
+|++++||+|.... .++.+.+.++.. ++|.|+++||++. . ...+.++.+ ..|++.
T Consensus 1 m~i~viSD~H~~~~--------------~~~~~~~~~~~~~~~d~ii~~GD~~~----~----~~~~~l~~~--~~~~~~ 56 (158)
T TIGR00040 1 MKILVISDTHGPLR--------------ATELPVELFNLESNVDLVIHAGDLTS----P----FVLKEFEDL--AAKVIA 56 (158)
T ss_pred CEEEEEecccCCcc--------------hhHhHHHHHhhccCCCEEEEcCCCCC----H----HHHHHHHHh--CCceEE
Confidence 58999999995421 123333444444 8999999999982 1 122333332 458999
Q ss_pred ecCCCcc
Q 046241 408 AIGNHER 414 (638)
Q Consensus 408 v~GNHD~ 414 (638)
+.||||.
T Consensus 57 V~GN~D~ 63 (158)
T TIGR00040 57 VRGNNDG 63 (158)
T ss_pred EccCCCc
Confidence 9999995
No 50
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.71 E-value=1.7e-07 Score=96.11 Aligned_cols=188 Identities=18% Similarity=0.157 Sum_probs=95.1
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCcc-EEEEeCCcccCCCcHH--HHHHHHHhhhhhccCcce
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVD-SIFHIGDISYATGFLV--EWDFFLHQISPVASRVSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pD-fvl~~GDi~y~~g~~~--~wd~f~~~l~~l~~~vP~ 405 (638)
++|+.++|+|...... .+.+....+..+++++++.++| +++.+||++....... ......+.+..+ -.-
T Consensus 1 l~i~~~sD~hg~~~~~-----~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~---g~d 72 (252)
T cd00845 1 LTILHTNDLHGHFEPA-----GGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNAL---GYD 72 (252)
T ss_pred CEEEEecccccCcccc-----CCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhc---CCC
Confidence 4799999999432110 1223456677777887777888 7789999985433211 112233333332 234
Q ss_pred EEecCCCccCCCCCCCCcccCCCCCCccchhcc-ccc-cC---CCCCCCCCeEEEEECCEEEEEEe--CCCCCC------
Q 046241 406 MTAIGNHERDYLGSSGSVYESPDSGGECGVAYE-TYF-PM---PIPARDKPWYSIEQAGVHFTVMS--TEHDWS------ 472 (638)
Q Consensus 406 ~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~-~~f-~~---P~~~~~~~yYsfd~G~v~fi~LD--T~~~~~------ 472 (638)
++++||||++... .+ ...... +...++. ... .. ........|..++.+++++-++. +.....
T Consensus 73 ~~~~GNHe~d~g~-~~-l~~~~~---~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~ 147 (252)
T cd00845 73 AVTIGNHEFDYGL-DA-LAELYK---DANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGW 147 (252)
T ss_pred EEeeccccccccH-HH-HHHHHH---hCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCc
Confidence 5678999986432 00 000000 0000000 000 00 00001234667788886554443 321100
Q ss_pred ----CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 473 ----ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 473 ----~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
......+.+++..+.. +.+...+|++.|.+... + ..+...+ .+||++|+||.|....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~-~~~~D~vIvl~H~g~~~------~----~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 148 IIGLPFEDLAEAVAVAEELL-AEGADVIILLSHLGLDD------D----EELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred ccCceecCHHHHHHHHHHHH-hCCCCEEEEEeccCccc------h----HHHHhcC--CCccEEEcCCcCcccC
Confidence 0012233343322221 24677899999988642 1 1221112 5899999999998764
No 51
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.69 E-value=1.8e-07 Score=94.96 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=45.1
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccC----CCcHHHHHHHHHhhhhhcc-CcceE
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYA----TGFLVEWDFFLHQISPVAS-RVSYM 406 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~----~g~~~~wd~f~~~l~~l~~-~vP~~ 406 (638)
++++|+|.+..... .....++.+.+.. .+||+|+++||+++. .......+.+.+.++.+.. ..|++
T Consensus 2 ~~iSDlHl~~~~~~-------~~~~~l~~l~~~~--~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~ 72 (231)
T TIGR01854 2 LFISDLHLSPERPD-------ITALFLDFLREEA--RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCY 72 (231)
T ss_pred eEEEecCCCCCChh-------HHHHHHHHHHhhh--ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEE
Confidence 68999998753210 0112233333222 379999999999962 1112223445555666543 58999
Q ss_pred EecCCCcc
Q 046241 407 TAIGNHER 414 (638)
Q Consensus 407 ~v~GNHD~ 414 (638)
+++||||+
T Consensus 73 ~v~GNHD~ 80 (231)
T TIGR01854 73 FMHGNRDF 80 (231)
T ss_pred EEcCCCch
Confidence 99999997
No 52
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=98.68 E-value=1.3e-07 Score=95.44 Aligned_cols=166 Identities=19% Similarity=0.159 Sum_probs=98.9
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCc---------------------HHH
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGF---------------------LVE 388 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~---------------------~~~ 388 (638)
||++.++.+..... ......+.....+.+||++||+||.+|++.. ..+
T Consensus 1 r~a~~SC~~~~~~~-----------~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (228)
T cd07389 1 RFAFGSCNKYESGY-----------FNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEE 69 (228)
T ss_pred CEEEEECCCCCCCC-----------cHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHH
Confidence 47777876654322 1222222211246899999999999999842 111
Q ss_pred HH----HHH--HhhhhhccCcceEEecCCCccCCCCCCCCccc-CC--C---CCCccchhccccccCCCCC-----CCCC
Q 046241 389 WD----FFL--HQISPVASRVSYMTAIGNHERDYLGSSGSVYE-SP--D---SGGECGVAYETYFPMPIPA-----RDKP 451 (638)
Q Consensus 389 wd----~f~--~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~-~~--d---s~ge~~~~y~~~f~~P~~~-----~~~~ 451 (638)
+. .++ ..++.+.+++|++.++.+||+..+. .+.... .. . ........|..+.+.+... ....
T Consensus 70 ~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~~n~-~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~ 148 (228)
T cd07389 70 YRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGDNW-GGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGI 148 (228)
T ss_pred HHHHHHHHcCCHHHHHHhhcCCEEEecccccccccc-ccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceE
Confidence 21 111 2345667889999999999996544 111000 00 0 0011223455555554332 2457
Q ss_pred eEEEEECCE-EEEEEeCCCCCCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhC--C
Q 046241 452 WYSIEQAGV-HFTVMSTEHDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDN--K 528 (638)
Q Consensus 452 yYsfd~G~v-~fi~LDT~~~~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~--~ 528 (638)
|+++.+|.. .|++||++... ..+.....-|+++..++.+. +
T Consensus 149 y~~~~~G~~~~~~~lD~R~~R------------------------------------d~W~~~~~er~~l~~~~~~~~~~ 192 (228)
T cd07389 149 YRSFRFGDLVDLILLDTRTYR------------------------------------DSWDGYPAERERLLDLLAKRKIK 192 (228)
T ss_pred EEEEecCCcceEEEEeccccc------------------------------------ccccccHHHHHHHHHHHHHhCCC
Confidence 999999996 99999998754 22334445577777775544 3
Q ss_pred CeEEEEcccccccee
Q 046241 529 VDLALFGHVHNYERT 543 (638)
Q Consensus 529 VdlvlsGH~H~YeRt 543 (638)
--++|+|++|..+-.
T Consensus 193 ~vv~lSGDvH~~~~~ 207 (228)
T cd07389 193 NVVFLSGDVHLAEAS 207 (228)
T ss_pred CeEEEecHHHHHHHh
Confidence 338899999987754
No 53
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.68 E-value=4.6e-07 Score=100.32 Aligned_cols=180 Identities=16% Similarity=0.229 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhhC--CCccEEEEeCCcccCCCc----HH---HHHHHHHhhhhhccCcceEEecCCCccCCCCCCCCccc
Q 046241 355 LSVIKAMADEVDN--GSVDSIFHIGDISYATGF----LV---EWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYE 425 (638)
Q Consensus 355 ~~~~~~l~~~i~~--~~pDfvl~~GDi~y~~g~----~~---~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~ 425 (638)
..+++.+++.+++ .++|+|+++||++-.+.. .. ......+.+......+|+++++||||...... +.
T Consensus 194 ~~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~----F~ 269 (577)
T KOG3770|consen 194 KRLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNL----FA 269 (577)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhh----cC
Confidence 4566666666654 349999999999854311 11 11234445566667999999999999854331 10
Q ss_pred CCCCCCccch--hcccc---c--cCCCCCC----CCCeEEE-EECCEEEEEEeCCCC----------CCCcHHHHHHHHH
Q 046241 426 SPDSGGECGV--AYETY---F--PMPIPAR----DKPWYSI-EQAGVHFTVMSTEHD----------WSENSEQYEWMKK 483 (638)
Q Consensus 426 ~~ds~ge~~~--~y~~~---f--~~P~~~~----~~~yYsf-d~G~v~fi~LDT~~~----------~~~~~~Q~~WL~~ 483 (638)
.......... .|++. | .+|.... .+.+|.- -+++.++|+||+..- -.....|++|+..
T Consensus 270 ~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~ 349 (577)
T KOG3770|consen 270 PGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVD 349 (577)
T ss_pred CCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHH
Confidence 0000000000 11111 1 1232221 2345654 368999999999641 1345788999999
Q ss_pred HhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhC--CCeEEEEccccccce
Q 046241 484 DMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDN--KVDLALFGHVHNYER 542 (638)
Q Consensus 484 ~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~--~VdlvlsGH~H~YeR 542 (638)
+|.++. ++..-+=+++|.|+-.... .......+-.++.++ -+...|.||.|.-+-
T Consensus 350 ~L~~ae-~~GekVhil~HIPpG~~~c---~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f 406 (577)
T KOG3770|consen 350 QLQEAE-SAGEKVHILGHIPPGDGVC---LEGWSINFYRIVNRFRSTIAGQFYGHTHIDEF 406 (577)
T ss_pred HHHHHH-hcCCEEEEEEeeCCCCcch---hhhhhHHHHHHHHHHHHhhhhhccccCcceeE
Confidence 999875 3444466779999854221 122233444555554 244669999998663
No 54
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.66 E-value=1.4e-07 Score=92.39 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHh-hCCCccEEEEeCCcccCCCc--HHHHH----HHHHhhhhhc----------------cCcceEEecCCCc
Q 046241 357 VIKAMADEV-DNGSVDSIFHIGDISYATGF--LVEWD----FFLHQISPVA----------------SRVSYMTAIGNHE 413 (638)
Q Consensus 357 ~~~~l~~~i-~~~~pDfvl~~GDi~y~~g~--~~~wd----~f~~~l~~l~----------------~~vP~~~v~GNHD 413 (638)
.++.+.+.+ ...+||.|+++||+... +. .++|. .|.+.+-+-. ..+|++.++||||
T Consensus 31 YL~~~~~~~~~~l~Pd~V~fLGDLfd~-~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHD 109 (193)
T cd08164 31 FLGHIVSMMQFWLKPDAVVVLGDLFSS-QWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHD 109 (193)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccCC-CcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCccc
Confidence 334444433 34799999999999954 33 34453 3333321100 1489999999999
Q ss_pred cCC
Q 046241 414 RDY 416 (638)
Q Consensus 414 ~~~ 416 (638)
..+
T Consensus 110 IG~ 112 (193)
T cd08164 110 VGY 112 (193)
T ss_pred CCC
Confidence 854
No 55
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.62 E-value=5.6e-07 Score=93.79 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=99.9
Q ss_pred EEEEEEecCCCCCCCCCc--ccccCCChHHHHHHHHHHhhCCCccEEEE-eCCcccCCCcHHHHH---------HHHHhh
Q 046241 329 LRFLTYGDMGKAPLDDSA--EHYIQPGSLSVIKAMADEVDNGSVDSIFH-IGDISYATGFLVEWD---------FFLHQI 396 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~--~~~~~pg~~~~~~~l~~~i~~~~pDfvl~-~GDi~y~~g~~~~wd---------~f~~~l 396 (638)
++|+.++|+|..-..... ......+....+..+++++++.++|.+++ +||+..... ...+. ...+.+
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~-~~~~~~~~~~~~~~~~~~~l 79 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSP-LADYYAKIEDGDPHPMIAAM 79 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccH-HHHHhhhcccCCCChHHHHH
Confidence 478999999954211000 00011244566777888877778888776 999985332 12221 233444
Q ss_pred hhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCC---------C--CCCCCCeEEEEEC-CEEEEE
Q 046241 397 SPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMP---------I--PARDKPWYSIEQA-GVHFTV 464 (638)
Q Consensus 397 ~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P---------~--~~~~~~yYsfd~G-~v~fi~ 464 (638)
..+ ... +.++||||+++.. . .. ....+....| . ......|..++.+ ++++-+
T Consensus 80 n~~--g~d-~~~lGNHe~d~g~-~--~l----------~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgv 143 (277)
T cd07410 80 NAL--GYD-AGTLGNHEFNYGL-D--YL----------DKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGI 143 (277)
T ss_pred Hhc--CCC-EEeecccCcccCH-H--HH----------HHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEE
Confidence 433 233 5678999986432 0 00 0000111111 0 0012457778888 866555
Q ss_pred EeCCCCC---------------CCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHh-CC
Q 046241 465 MSTEHDW---------------SENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLD-NK 528 (638)
Q Consensus 465 LDT~~~~---------------~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k-~~ 528 (638)
+.-.... ....+..++..+.|++ .+...+|+++|.+......... ..+.....|.++ .+
T Consensus 144 iG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~--~~~~~~~~la~~~~~ 218 (277)
T cd07410 144 IGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESL--TGENAAYELAEEVPG 218 (277)
T ss_pred EecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccccc--CCccHHHHHHhcCCC
Confidence 5432111 1112234444445543 4677899999998754321000 111122334444 58
Q ss_pred CeEEEEccccccc
Q 046241 529 VDLALFGHVHNYE 541 (638)
Q Consensus 529 VdlvlsGH~H~Ye 541 (638)
||++|.||.|...
T Consensus 219 vD~IlgGHsH~~~ 231 (277)
T cd07410 219 IDAILTGHQHRRF 231 (277)
T ss_pred CcEEEeCCCcccc
Confidence 9999999999754
No 56
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.57 E-value=5.6e-07 Score=92.86 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=96.0
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCcc-EEEEeCCcccCCCcHHHH---HHHHHhhhhhccCcc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVD-SIFHIGDISYATGFLVEW---DFFLHQISPVASRVS 404 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pD-fvl~~GDi~y~~g~~~~w---d~f~~~l~~l~~~vP 404 (638)
++++.+.|+|.-.... ..+.+....+..+++++++.+++ +++.+||++.... ...+ +...+.++.+ ..
T Consensus 1 ~~il~~nd~~~~~~~~----~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~-~~~~~~g~~~~~~l~~l--~~- 72 (257)
T cd07406 1 FTILHFNDVYEIAPLD----GGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSL-LSTATKGKQMVPVLNAL--GV- 72 (257)
T ss_pred CeEEEEccceeecccC----CCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCcc-chhhcCCccHHHHHHhc--CC-
Confidence 4789999998322110 11224466777777877777788 8999999985332 2122 2233333332 22
Q ss_pred eEEecCCCccCCCCCCCCcccCCCCCCccchhccc-cccCCCC-C---CCCCeEEEEECCEEE--EEEeCCCCC------
Q 046241 405 YMTAIGNHERDYLGSSGSVYESPDSGGECGVAYET-YFPMPIP-A---RDKPWYSIEQAGVHF--TVMSTEHDW------ 471 (638)
Q Consensus 405 ~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~-~f~~P~~-~---~~~~yYsfd~G~v~f--i~LDT~~~~------ 471 (638)
-+.++||||+++.. . .+.. .-.+...++.. ....... . .-+.|..++.+++++ +.+.+....
T Consensus 73 d~~~~GNHefd~g~-~--~l~~--~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~ 147 (257)
T cd07406 73 DLACFGNHEFDFGE-D--QLQK--RLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTID 147 (257)
T ss_pred cEEeecccccccCH-H--HHHH--HHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCC
Confidence 36689999986422 0 0000 00000001100 0000000 0 124577888898654 555443211
Q ss_pred C---CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHh-CCCeEEEEccccccc
Q 046241 472 S---ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLD-NKVDLALFGHVHNYE 541 (638)
Q Consensus 472 ~---~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k-~~VdlvlsGH~H~Ye 541 (638)
. .-.+-.+.+++.+++..+.+...+|++.|-+... + ..+.++ .+||++|.||.|..+
T Consensus 148 ~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~------d-------~~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 148 PEYVRYRDYVETARELVDELREQGADLIIALTHMRLPN------D-------KRLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred CCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh------h-------HHHHHhCCCCceEEecccceeE
Confidence 0 0112233344444333235678899999987531 1 123333 489999999999866
No 57
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.55 E-value=1.4e-06 Score=91.48 Aligned_cols=210 Identities=16% Similarity=0.185 Sum_probs=99.2
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCcc-EEEEeCCcccCCCcHHHH---HHHHHhhhhhccCcc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVD-SIFHIGDISYATGFLVEW---DFFLHQISPVASRVS 404 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pD-fvl~~GDi~y~~g~~~~w---d~f~~~l~~l~~~vP 404 (638)
++|+.++|+|..-.........+.+....+..+++++++.+++ +++.+||++........+ +...+.+..+ ..-
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~--g~D 78 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAM--GVD 78 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhh--CCe
Confidence 4789999999542211000011223456667777777665565 888999998533322222 2223333322 222
Q ss_pred eEEecCCCccCCCCCCCC--cccC-CCCCCcc--chhcc-ccccC-----CCCC----CCCCeEEEEECCEEE--EEEeC
Q 046241 405 YMTAIGNHERDYLGSSGS--VYES-PDSGGEC--GVAYE-TYFPM-----PIPA----RDKPWYSIEQAGVHF--TVMST 467 (638)
Q Consensus 405 ~~~v~GNHD~~~~~~sgs--~y~~-~ds~ge~--~~~y~-~~f~~-----P~~~----~~~~yYsfd~G~v~f--i~LDT 467 (638)
+.++||||+++.. ..- .... .+..-.| ...|+ ..|++ .... .-..|.-++.+++++ |.+-+
T Consensus 79 -a~t~GNHefd~G~-~~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~~ 156 (288)
T cd07412 79 -ASAVGNHEFDEGY-AELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAVT 156 (288)
T ss_pred -eeeecccccccCH-HHHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEeecC
Confidence 5678999997532 000 0000 0000000 00000 01111 0000 013466678888654 44433
Q ss_pred CCC--C-C-------CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHh--CCCeEEEEc
Q 046241 468 EHD--W-S-------ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLD--NKVDLALFG 535 (638)
Q Consensus 468 ~~~--~-~-------~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k--~~VdlvlsG 535 (638)
... + . .-..-.+-+++.+++....+...+|++.|.....................++.+ .+||++|.|
T Consensus 157 ~~~~~~~~~~~~~g~~f~d~~e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~~~~~~~~~~~l~~~~~~~iD~IlgG 236 (288)
T cd07412 157 KDTPNLVSPDGVAGLEFTDEVEAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDTCSAASGPIADIVNRLDPDVDVVFAG 236 (288)
T ss_pred CCccceeccccccCceEcCHHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCccccccChhHHHHHhhcCCCCCEEEeC
Confidence 210 0 0 011223344444444332467889999998875332211111111122334444 479999999
Q ss_pred cccccce
Q 046241 536 HVHNYER 542 (638)
Q Consensus 536 H~H~YeR 542 (638)
|.|....
T Consensus 237 HsH~~~~ 243 (288)
T cd07412 237 HTHQAYN 243 (288)
T ss_pred ccCcccc
Confidence 9998764
No 58
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.52 E-value=3.5e-07 Score=84.30 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=32.0
Q ss_pred EEEEeccCCccCCCC-CCCHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 496 LIFSGHRPMYSSLSS-SVDNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 496 ~IV~~H~P~yss~~~-~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
.|+++|+|++..... .......+.+..++.+++++++|+||.|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGEDFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCcccccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 467778877643211 001122457778888899999999999987654
No 59
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.45 E-value=7.8e-07 Score=88.81 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=92.3
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCC-----CcHHHHHH-HHHhhhhhccCcce
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYAT-----GFLVEWDF-FLHQISPVASRVSY 405 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~-----g~~~~wd~-f~~~l~~l~~~vP~ 405 (638)
++++|+|.+.... ........+.......++|.++++||+++.- ......+. +...++......++
T Consensus 1 ~~iSDlHlg~~~~--------~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v 72 (217)
T cd07398 1 LFISDLHLGDGGP--------AADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRV 72 (217)
T ss_pred CEeeeecCCCCCC--------CHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeE
Confidence 4789999876442 1222233333222235899999999999531 11111222 23344444568899
Q ss_pred EEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 046241 406 MTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEHDWSENSEQYEWMKKDM 485 (638)
Q Consensus 406 ~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~~~~~~~~Q~~WL~~~L 485 (638)
+.++||||..... .+......... ......+.+++.+++++-... +......+.|+...+
T Consensus 73 ~~v~GNHD~~~~~-----------------~~~~~~~~~~~--~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~ 132 (217)
T cd07398 73 YYVPGNHDFLLGD-----------------FFAEELGLILL--PDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLG 132 (217)
T ss_pred EEECCCchHHHHh-----------------HHHHHcCCEEe--ccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHh
Confidence 9999999974221 11111000000 011225677888888776532 334445555555543
Q ss_pred ccccC------CCCCeEEEEeccCCccC----CC----CCCCHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 486 ASVDR------SKTPWLIFSGHRPMYSS----LS----SSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 486 a~~~r------~~~~w~IV~~H~P~yss----~~----~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
..... ..-.+..-........+ .. ........+.+..++.+++++++++||+|.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 204 (217)
T cd07398 133 RNPYDQLLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALH 204 (217)
T ss_pred CcHHHHHHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeE
Confidence 32100 00000000000000000 00 0111234556677788899999999999987653
No 60
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.44 E-value=4.3e-06 Score=86.30 Aligned_cols=160 Identities=17% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCccEEEEeCCcccCCCcH-----------HHHHHHHHhhhhhc-cCcceEEecCCCccCCCCCCCCcccCCCCCCccch
Q 046241 368 GSVDSIFHIGDISYATGFL-----------VEWDFFLHQISPVA-SRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGV 435 (638)
Q Consensus 368 ~~pDfvl~~GDi~y~~g~~-----------~~wd~f~~~l~~l~-~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~ 435 (638)
.++|++|++||+.-..... ..+..|.+.++... ..+|++++.||||-.. . +..-..|++..
T Consensus 27 ~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~GNHE~~~-~-----l~~l~~gg~v~- 99 (262)
T cd00844 27 TKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIGGNHEASN-Y-----LWELPYGGWVA- 99 (262)
T ss_pred CCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEECCCCCCHH-H-----HHhhcCCCeec-
Confidence 5799999999996322111 12344544444332 4677899999999411 0 00000011100
Q ss_pred hccccccCCCCCCCCCeEEEEECCEEEEEEeCCC---CCC--------CcHHHHHHH-------HHHhccccCCCCCeEE
Q 046241 436 AYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEH---DWS--------ENSEQYEWM-------KKDMASVDRSKTPWLI 497 (638)
Q Consensus 436 ~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~---~~~--------~~~~Q~~WL-------~~~La~~~r~~~~w~I 497 (638)
.+.+.+- ....+.+++++|..|.... ++. ..+.+...+ .+.|... +.+--|
T Consensus 100 --~Ni~~Lg------~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~r~~~~~kl~~~---~~~vDI 168 (262)
T cd00844 100 --PNIYYLG------YAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHVRNIEVFKLKQL---KQPIDI 168 (262)
T ss_pred --CcEEEec------CCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhhhHHHHHHHHhc---CCCCcE
Confidence 0001110 0124567899999887632 111 122333321 1122221 112358
Q ss_pred EEeccCCccCCCCCCC-----------------HHHHHHHHHHHHhCCCeEEEEccccc-cceecc
Q 046241 498 FSGHRPMYSSLSSSVD-----------------NKFVDAVEPLLLDNKVDLALFGHVHN-YERTCS 545 (638)
Q Consensus 498 V~~H~P~yss~~~~~~-----------------~~~r~~l~~Ll~k~~VdlvlsGH~H~-YeRt~p 545 (638)
+++|.|+......... ......+..|+++.+....|+||.|. |++..|
T Consensus 169 lLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 169 FLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred EEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCcccceecC
Confidence 9999999765432221 11245678899999999999999999 776644
No 61
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.39 E-value=4.8e-06 Score=85.90 Aligned_cols=187 Identities=18% Similarity=0.149 Sum_probs=93.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHH---HHHHHhhhhhccCcce
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEW---DFFLHQISPVASRVSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~w---d~f~~~l~~l~~~vP~ 405 (638)
++++.++|+|..-.... .+.+....+..+++++++.+.++++.+||++... ....+ ....+.+..+ ..-+
T Consensus 1 i~il~~~D~H~~~~~~~----~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs-~~~~~~~g~~~~~~ln~~--g~d~ 73 (257)
T cd07408 1 ITILHTNDIHGRIDEDD----NNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGL-PISDLDKGETIIKIMNAV--GYDA 73 (257)
T ss_pred CEEEEeccCcccccCCC----CccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCc-hhhhhcCCcHHHHHHHhc--CCcE
Confidence 47999999996432110 1223455566677766555678999999998532 11112 1222333322 3344
Q ss_pred EEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCC---------C--CCCCeEEEEEC-CE--EEEEEeCCCC-
Q 046241 406 MTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIP---------A--RDKPWYSIEQA-GV--HFTVMSTEHD- 470 (638)
Q Consensus 406 ~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~---------~--~~~~yYsfd~G-~v--~fi~LDT~~~- 470 (638)
.++||||+++.. . ....+.+.+..|-- + .-..|.-++.+ ++ -|+.+.+...
T Consensus 74 -~~~GNHefd~G~-~------------~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~ 139 (257)
T cd07408 74 -VTPGNHEFDYGL-D------------RLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETA 139 (257)
T ss_pred -EccccccccCCH-H------------HHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcc
Confidence 468999986422 0 00011111111110 0 01235556777 64 4555554321
Q ss_pred -C-CC-------cHHHHHHHHHH-hccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcccccc
Q 046241 471 -W-SE-------NSEQYEWMKKD-MASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNY 540 (638)
Q Consensus 471 -~-~~-------~~~Q~~WL~~~-La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~Y 540 (638)
. .+ -.+-.+-+++. .....+.+...+|++.|.+.......... ..+.. .-.+||++|.||.|..
T Consensus 140 ~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~~~~----~~la~--~~~giDvIigGH~H~~ 213 (257)
T cd07408 140 TKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSPWTS----TELAA--NVTGIDLIIDGHSHTT 213 (257)
T ss_pred cccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCCccH----HHHHH--hCCCceEEEeCCCccc
Confidence 0 00 00112223332 22211246788999999887543211111 12222 1248999999999987
Q ss_pred ce
Q 046241 541 ER 542 (638)
Q Consensus 541 eR 542 (638)
..
T Consensus 214 ~~ 215 (257)
T cd07408 214 IE 215 (257)
T ss_pred cc
Confidence 64
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.37 E-value=5.7e-06 Score=85.68 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=95.9
Q ss_pred EEEEEEecCCCCCCCCC--------cccccCCChHHHHHHHHHHhhCC-CccEE-EEeCCcccCCCcHHHHHHHHHhhhh
Q 046241 329 LRFLTYGDMGKAPLDDS--------AEHYIQPGSLSVIKAMADEVDNG-SVDSI-FHIGDISYATGFLVEWDFFLHQISP 398 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~--------~~~~~~pg~~~~~~~l~~~i~~~-~pDfv-l~~GDi~y~~g~~~~wd~f~~~l~~ 398 (638)
++|+..+|+|..-.... .....+.+....+..+++++++. ++|.+ +.+||+..... ...+......++.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~-~~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSG-EALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCCh-HHhhcCChhHHHH
Confidence 46888999987532210 01111234567778888887776 89977 57999995432 2222211122222
Q ss_pred hccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCC-----------CCCCCCeEEEEECCEE--EEEE
Q 046241 399 VASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPI-----------PARDKPWYSIEQAGVH--FTVM 465 (638)
Q Consensus 399 l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~-----------~~~~~~yYsfd~G~v~--fi~L 465 (638)
+..+++.++.||||+++.. .+ .....+.+..|- ...-..|..++.++++ ||.+
T Consensus 80 -l~~~g~da~~GNHefd~g~-~~------------l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~ 145 (264)
T cd07411 80 -LNALGVDAMVGHWEFTYGP-ER------------VRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQ 145 (264)
T ss_pred -HHhhCCeEEecccccccCH-HH------------HHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEe
Confidence 2235665555999986432 00 000111111110 0001246667888855 4555
Q ss_pred eCCCCCC--C--------cHHHHHHHHHHhcccc-CCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHh-CCCeEEE
Q 046241 466 STEHDWS--E--------NSEQYEWMKKDMASVD-RSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLD-NKVDLAL 533 (638)
Q Consensus 466 DT~~~~~--~--------~~~Q~~WL~~~La~~~-r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k-~~Vdlvl 533 (638)
.+..... . .....+.+++.+++.. ..+...+|++.|.+... + ..+.++ .+||++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~------~-------~~la~~~~~iDlil 212 (264)
T cd07411 146 TFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNGLPV------D-------VELAERVPGIDVIL 212 (264)
T ss_pred ccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCCchh------h-------HHHHhcCCCCcEEE
Confidence 4431100 0 1223444554433321 24577899999987531 1 122223 4799999
Q ss_pred Eccccccc
Q 046241 534 FGHVHNYE 541 (638)
Q Consensus 534 sGH~H~Ye 541 (638)
.||.|...
T Consensus 213 gGH~H~~~ 220 (264)
T cd07411 213 SGHTHERT 220 (264)
T ss_pred eCcccccc
Confidence 99999754
No 63
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.34 E-value=2e-06 Score=94.03 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=59.1
Q ss_pred EEEEEEecCCCCC-CCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCc-HHHHHHHHHhhhhhc-cCcce
Q 046241 329 LRFLTYGDMGKAP-LDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGF-LVEWDFFLHQISPVA-SRVSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~-~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~-~~~wd~f~~~l~~l~-~~vP~ 405 (638)
+||+..+|+|.+. ...... ........+.++++.+.+.++||||++||+.+.... ...-..+.+.++.+. .++|+
T Consensus 1 mkilHtSD~HLG~~~~~~~~--r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv 78 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPS--RLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPV 78 (390)
T ss_pred CeeEEecccccchhhccCcc--chHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcE
Confidence 5899999999983 221111 111235667778888888999999999999965432 222345556666554 58999
Q ss_pred EEecCCCccC
Q 046241 406 MTAIGNHERD 415 (638)
Q Consensus 406 ~~v~GNHD~~ 415 (638)
+++.||||..
T Consensus 79 ~~I~GNHD~~ 88 (390)
T COG0420 79 VVIAGNHDSP 88 (390)
T ss_pred EEecCCCCch
Confidence 9999999973
No 64
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.30 E-value=9.2e-06 Score=84.95 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=95.9
Q ss_pred EEEEEEecCCCCCCCCCc-------ccccCCChHHHHHHHHHHhhCCCcc-EEEEeCCcccCCCcHH--HHHHHHHhhhh
Q 046241 329 LRFLTYGDMGKAPLDDSA-------EHYIQPGSLSVIKAMADEVDNGSVD-SIFHIGDISYATGFLV--EWDFFLHQISP 398 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~-------~~~~~pg~~~~~~~l~~~i~~~~pD-fvl~~GDi~y~~g~~~--~wd~f~~~l~~ 398 (638)
++|+..+|+|..-..... ....+.+....+..+++++++.+++ +++.+||+........ +.+...+.+..
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~ 80 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNL 80 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHh
Confidence 478999999964321100 0112234466677777777666777 5556999985432111 11222333333
Q ss_pred hccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCC--------C------CCCCCeEEEEECCEEE--
Q 046241 399 VASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPI--------P------ARDKPWYSIEQAGVHF-- 462 (638)
Q Consensus 399 l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~--------~------~~~~~yYsfd~G~v~f-- 462 (638)
+ ... +.++||||+++.. .+ ...+.+....|. . ..-..|..++.+++++
T Consensus 81 ~--g~D-~~~lGNHefd~G~-~~------------l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgv 144 (281)
T cd07409 81 L--GYD-AMTLGNHEFDDGV-EG------------LAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGI 144 (281)
T ss_pred c--CCC-EEEeccccccCCH-HH------------HHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEE
Confidence 2 333 4567999997533 10 000001011110 0 0113466778888654
Q ss_pred EEEeCCCCC---C--C---cHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHh-CCCeEEE
Q 046241 463 TVMSTEHDW---S--E---NSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLD-NKVDLAL 533 (638)
Q Consensus 463 i~LDT~~~~---~--~---~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k-~~Vdlvl 533 (638)
+.+.+.... . . -.+..+.+++.+++....+...+|++.|..... + ..+.++ .+||+++
T Consensus 145 iG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~------d-------~~la~~~~giD~Ii 211 (281)
T cd07409 145 IGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV------D-------KEIARKVPGVDVIV 211 (281)
T ss_pred EEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh------H-------HHHHHcCCCCcEEE
Confidence 544442210 0 0 122345566666555434578899999987421 1 122333 4899999
Q ss_pred Eccccccc
Q 046241 534 FGHVHNYE 541 (638)
Q Consensus 534 sGH~H~Ye 541 (638)
.||.|...
T Consensus 212 ggH~H~~~ 219 (281)
T cd07409 212 GGHSHTFL 219 (281)
T ss_pred eCCcCccc
Confidence 99999965
No 65
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.22 E-value=2.7e-05 Score=81.59 Aligned_cols=200 Identities=16% Similarity=0.104 Sum_probs=91.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC-----CCccEEEEeCCcccCCCcHHHHH---HHHHhhhhhc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN-----GSVDSIFHIGDISYATGFLVEWD---FFLHQISPVA 400 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~-----~~pDfvl~~GDi~y~~g~~~~wd---~f~~~l~~l~ 400 (638)
++++..+|+|..-.... ...+....+..+++++++ ...-+++.+||+.... ....+. ...+.+..+
T Consensus 1 ltIl~tnD~Hg~l~~~~----~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs-~~~~~~~g~~~~~~~n~~- 74 (285)
T cd07405 1 ITILHTNDHHGHFWPNG----TGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGV-PESDLQDAEPDFRGMNLV- 74 (285)
T ss_pred CEEEEEcccccccccCC----CCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCc-hhHHhcCcchHHHHHHhh-
Confidence 47899999997532210 112334445555555543 2335788899998332 222221 111222222
Q ss_pred cCcceEEecCCCccCCCCCCCCcccCCCCCCccchhcc--ccccCCCCCCCCCeEEEEECCEEEE--EEeCCCC---CCC
Q 046241 401 SRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYE--TYFPMPIPARDKPWYSIEQAGVHFT--VMSTEHD---WSE 473 (638)
Q Consensus 401 ~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~--~~f~~P~~~~~~~yYsfd~G~v~fi--~LDT~~~---~~~ 473 (638)
..- ..++||||+++.. .. ...... +...++. +.+.......-..|.-++.+++++- .+.+... ..+
T Consensus 75 -g~D-a~~~GNHEfD~G~-~~--L~~~~~--~~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~~~~~~~~~~ 147 (285)
T cd07405 75 -GYD-AMAVGNHEFDNPL-EV--LRQQMK--WANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTTDDTAKIGNP 147 (285)
T ss_pred -CCc-EEeecccccccCH-HH--HHHHHh--hCCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecccccccccCc
Confidence 233 4467999997633 00 000000 0000000 0000000001234677788886654 4433211 000
Q ss_pred -------cHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 474 -------NSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 474 -------~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
-.+..+=+++.+++....+..-+|++.|-.................+...+...++|++|.||.|...
T Consensus 148 ~~~~~~~f~d~~~~~~~~v~~lk~~~~D~VI~lsH~G~~~~~~~~~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 148 AYFEGIEFRPPIHEAKEVVPELKQEKPDIVIAATHMGHYDNGEHGSNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred CCcCCcEEcCHHHHHHHHHHHHHHcCCCEEEEEecccccCCccccccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 01112222222222222367789999999875332111110111233333333589999999999965
No 66
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.18 E-value=0.00013 Score=70.55 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=42.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
++++++||+|.... ......+.....++|+|+|+||.+... ....|... -..+++++
T Consensus 2 m~ilviSDtH~~~~--------------~~~~~~~~~~~~~~d~vih~GD~~~~~-~~~~l~~~--------~~~~i~~V 58 (172)
T COG0622 2 MKILVISDTHGPLR--------------AIEKALKIFNLEKVDAVIHAGDSTSPF-TLDALEGG--------LAAKLIAV 58 (172)
T ss_pred cEEEEEeccCCChh--------------hhhHHHHHhhhcCCCEEEECCCcCCcc-chHHhhcc--------cccceEEE
Confidence 78999999997531 122333333557999999999999543 22222111 14788999
Q ss_pred cCCCccC
Q 046241 409 IGNHERD 415 (638)
Q Consensus 409 ~GNHD~~ 415 (638)
.||.|..
T Consensus 59 ~GN~D~~ 65 (172)
T COG0622 59 RGNCDGE 65 (172)
T ss_pred EccCCCc
Confidence 9999973
No 67
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.16 E-value=6.9e-05 Score=77.09 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=90.7
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCC-CcHHHHHHHHHhhhhhccCcceEEe
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYAT-GFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~-g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
|++++||.=.. ||...+.+.|-+..++.++||++..||++-.. +... ...+.+..+ .+-+ ++
T Consensus 1 ~ilfigdi~g~-----------~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~---~~~~~L~~~--G~D~-iT 63 (255)
T cd07382 1 KILFIGDIVGK-----------PGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITP---KIAKELLSA--GVDV-IT 63 (255)
T ss_pred CEEEEEeCCCH-----------HHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCH---HHHHHHHhc--CCCE-EE
Confidence 58899996432 23333334443333457899999999998432 2221 222233322 3344 45
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCC--CCCCCcHHHHHHHHHHhc
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTE--HDWSENSEQYEWMKKDMA 486 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~--~~~~~~~~Q~~WL~~~La 486 (638)
.||||++... .+..-+... . .. .--+.|....+..|..++.+++++-+++-. ........-++-+++.++
T Consensus 64 lGNH~fD~ge----l~~~l~~~~--~-~l-~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~ 135 (255)
T cd07382 64 MGNHTWDKKE----ILDFIDEEP--R-LL-RPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLE 135 (255)
T ss_pred ecccccCcch----HHHHHhcCc--C-ce-EeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHH
Confidence 5999986431 100000000 0 00 001122222345678888888776555432 111111122344555555
Q ss_pred cccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 487 SVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 487 ~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
+.. .+.+.+||.+|--.. .+ ...+.. .-.-+||+++.||.|..--
T Consensus 136 ~lk-~~~D~IIV~~H~g~t--------sE-k~ala~-~ldg~VdvIvGtHTHv~t~ 180 (255)
T cd07382 136 ELK-EEADIIFVDFHAEAT--------SE-KIALGW-YLDGRVSAVVGTHTHVQTA 180 (255)
T ss_pred HHh-cCCCEEEEEECCCCC--------HH-HHHHHH-hCCCCceEEEeCCCCccCC
Confidence 543 257789999997431 11 112221 2233699999999998653
No 68
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=5e-06 Score=85.58 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=56.9
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcH-HHHHHHHHhhhhhcc-C-cce
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL-VEWDFFLHQISPVAS-R-VSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~-~~wd~f~~~l~~l~~-~-vP~ 405 (638)
+||++++|+|.+....... ..+.....++++.+.+.+.++|+|+++||+.+..... .....+.+.++.+.. . +|+
T Consensus 1 mkilh~SD~Hlg~~~~~~~--~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v 78 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVS--RLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPI 78 (253)
T ss_pred CEEEEEhhhcCCCccCCCC--hHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceE
Confidence 5899999999875432111 1111245677888877788999999999999754322 223334444554432 3 899
Q ss_pred EEecCCCccC
Q 046241 406 MTAIGNHERD 415 (638)
Q Consensus 406 ~~v~GNHD~~ 415 (638)
++++||||..
T Consensus 79 ~~i~GNHD~~ 88 (253)
T TIGR00619 79 VVISGNHDSA 88 (253)
T ss_pred EEEccCCCCh
Confidence 9999999973
No 69
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.12 E-value=7.3e-06 Score=81.89 Aligned_cols=70 Identities=17% Similarity=0.221 Sum_probs=44.6
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh--------CCCccEEEEeCCcccCCCcHHH-HHHHHHhhhh-hcc
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD--------NGSVDSIFHIGDISYATGFLVE-WDFFLHQISP-VAS 401 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~--------~~~pDfvl~~GDi~y~~g~~~~-wd~f~~~l~~-l~~ 401 (638)
+++||+|. ....++++++.+. ..+.|.++++||+++.+....+ .+.+.+..+. ...
T Consensus 1 ~vi~DIHG--------------~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~ 66 (208)
T cd07425 1 VAIGDLHG--------------DLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKA 66 (208)
T ss_pred CEEeCccC--------------CHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhc
Confidence 47899995 3466777776653 3478999999999965433322 2222222111 123
Q ss_pred CcceEEecCCCccC
Q 046241 402 RVSYMTAIGNHERD 415 (638)
Q Consensus 402 ~vP~~~v~GNHD~~ 415 (638)
..+++++.||||..
T Consensus 67 ~~~v~~l~GNHE~~ 80 (208)
T cd07425 67 GGKVHFLLGNHELM 80 (208)
T ss_pred CCeEEEeeCCCcHH
Confidence 56899999999963
No 70
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.10 E-value=4.1e-05 Score=94.75 Aligned_cols=193 Identities=19% Similarity=0.149 Sum_probs=96.3
Q ss_pred cEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEE-eCCcccCCCcHHH---HHHHHHhhhhhccCc
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFH-IGDISYATGFLVE---WDFFLHQISPVASRV 403 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~-~GDi~y~~g~~~~---wd~f~~~l~~l~~~v 403 (638)
.++|+.++|+|..- . ....+..+++++++.+++.|++ +||++... .... +....+.+..+ -
T Consensus 660 ~l~Il~~nD~Hg~l-~----------g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs-~~~~~~~g~~~~~~ln~l---g 724 (1163)
T PRK09419 660 ELTILHTNDFHGHL-D----------GAAKRVTKIKEVKEENPNTILVDAGDVYQGS-LYSNLLKGLPVLKMMKEM---G 724 (1163)
T ss_pred EEEEEEEeecccCC-C----------CHHHHHHHHHHHHhhCCCeEEEecCCCCCCc-chhhhcCChHHHHHHhCc---C
Confidence 49999999999432 1 1344566666667778888766 99998543 2221 12333333332 2
Q ss_pred ceEEecCCCccCCCCCCCCcccCCCCC-Cccchhccc-cccC-------CCCC----CCCCeEEEEECCEE--EEEEeCC
Q 046241 404 SYMTAIGNHERDYLGSSGSVYESPDSG-GECGVAYET-YFPM-------PIPA----RDKPWYSIEQAGVH--FTVMSTE 468 (638)
Q Consensus 404 P~~~v~GNHD~~~~~~sgs~y~~~ds~-ge~~~~y~~-~f~~-------P~~~----~~~~yYsfd~G~v~--fi~LDT~ 468 (638)
.-+.++||||+++... .-.-.....+ .+....|.. .|++ ...+ .-..|.-++.++++ ||.+-+.
T Consensus 725 ~d~~~~GNHEfd~g~~-~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~ 803 (1163)
T PRK09419 725 YDASTFGNHEFDWGPD-VLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTP 803 (1163)
T ss_pred CCEEEecccccccChH-HHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEeccc
Confidence 2356999999965331 0000000000 000000100 0110 0000 01357777888855 5555443
Q ss_pred CC--C-CC-------cHHHHHHHHHHhcccc-CCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhC-CCeEEEEcc
Q 046241 469 HD--W-SE-------NSEQYEWMKKDMASVD-RSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDN-KVDLALFGH 536 (638)
Q Consensus 469 ~~--~-~~-------~~~Q~~WL~~~La~~~-r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~-~VdlvlsGH 536 (638)
.- + .+ -.+..+.+++..++.. ..+...+|++.|.......... ......|.++. +||++|.||
T Consensus 804 ~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~~-----~~~~~~lA~~v~gIDvIigGH 878 (1163)
T PRK09419 804 ETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTTG-----EITGLELAKKVKGVDAIISAH 878 (1163)
T ss_pred ccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCcccccccc-----ccHHHHHHHhCCCCCEEEeCC
Confidence 10 0 00 1122333444433332 2467889999999875332111 11123344433 799999999
Q ss_pred ccccc
Q 046241 537 VHNYE 541 (638)
Q Consensus 537 ~H~Ye 541 (638)
.|..-
T Consensus 879 sH~~~ 883 (1163)
T PRK09419 879 THTLV 883 (1163)
T ss_pred CCccc
Confidence 99864
No 71
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.03 E-value=0.00023 Score=73.56 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=97.7
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-CCCccEEEEeCCcccCC-CcHHHHHHHHHhhhhhccCcceE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-NGSVDSIFHIGDISYAT-GFLVEWDFFLHQISPVASRVSYM 406 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-~~~pDfvl~~GDi~y~~-g~~~~wd~f~~~l~~l~~~vP~~ 406 (638)
+|++++||.=.. || ...+...+.+++ +.++||++..||++-.. +...+ ..+.+.. ..+-++
T Consensus 1 m~ilfiGDi~G~-----------~G-r~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~---~~~~L~~--~GvDvi 63 (266)
T TIGR00282 1 IKFLFIGDVYGK-----------AG-RKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLK---IYEFLKQ--SGVNYI 63 (266)
T ss_pred CeEEEEEecCCH-----------HH-HHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHH---HHHHHHh--cCCCEE
Confidence 589999997522 12 344444444443 46799999999998432 22221 1222222 245555
Q ss_pred EecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCC--CCCC--cHHHHHHHH
Q 046241 407 TAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEH--DWSE--NSEQYEWMK 482 (638)
Q Consensus 407 ~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~--~~~~--~~~Q~~WL~ 482 (638)
+. |||+++... .+..-+. + ....+..+.|....+..|..++.++.++-+++-.. ...+ ...-++-++
T Consensus 64 T~-GNH~~Dkge----~~~~i~~--~--~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d 134 (266)
T TIGR00282 64 TM-GNHTWFQKL----ILDVVIN--Q--KDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLK 134 (266)
T ss_pred Ec-cchhccCcH----HHHHHhc--c--ccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHH
Confidence 54 999986432 1100000 0 00111223343334556777888887776666421 1111 111233355
Q ss_pred HHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 483 KDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 483 ~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
+.+++.+ .+.+.+||.+|--. ...+.....+.+.+|++|+.-|.|..--
T Consensus 135 ~~i~~lk-~~~d~IIVd~Haea----------tsEK~a~~~~ldg~vsaVvGtHtHV~Ta 183 (266)
T TIGR00282 135 ELINMLK-KDCDLIFVDFHAET----------TSEKNAFGMAFDGYVTAVVGTHTHVPTA 183 (266)
T ss_pred HHHHhhh-cCCCEEEEEeCCCC----------HHHHHHHHHHhCCCccEEEeCCCCCCCC
Confidence 5555443 24678999999553 1124556677788999999999998653
No 72
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.03 E-value=4.2e-05 Score=82.38 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=75.7
Q ss_pred ccEEEEEEecCCCCCCCCCc--cc-ccCCChHHHHHHHHHH-hhCCCccEEEEeCCcccCCC--cHHHHHHHHHhhhhhc
Q 046241 327 EVLRFLTYGDMGKAPLDDSA--EH-YIQPGSLSVIKAMADE-VDNGSVDSIFHIGDISYATG--FLVEWDFFLHQISPVA 400 (638)
Q Consensus 327 ~~~rf~v~GD~g~~~~~~~~--~~-~~~pg~~~~~~~l~~~-i~~~~pDfvl~~GDi~y~~g--~~~~wd~f~~~l~~l~ 400 (638)
+.+|+++++|.|.-...... -+ ...-+..-.+++.... ....+||.++++||+.+.+. ..++|.+..+.++.+.
T Consensus 47 n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf 126 (410)
T KOG3662|consen 47 NSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIF 126 (410)
T ss_pred CceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhh
Confidence 34999999999986533210 00 0000111112222222 23479999999999997542 2466765444455443
Q ss_pred ---cCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCCC
Q 046241 401 ---SRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTEH 469 (638)
Q Consensus 401 ---~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~~ 469 (638)
..+|.+.++||||.++.. ....+....|+..|. .....|+.|+..|+++|++.
T Consensus 127 ~~k~~~~~~~i~GNhDIGf~~---------~~~~~~i~Rfe~~fg-------~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 127 GRKGNIKVIYIAGNHDIGFGN---------ELIPEWIDRFESVFG-------PTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred CCCCCCeeEEeCCcccccccc---------ccchhHHHHHHHhhc-------chhhhhccCCceeEEeeehh
Confidence 479999999999986433 000111234555553 13457899999999999875
No 73
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.00 E-value=2e-05 Score=76.02 Aligned_cols=78 Identities=17% Similarity=0.150 Sum_probs=44.4
Q ss_pred EEEecCCCCCCCCCc-ccccCCChHHHHHHHHHHhhC--CCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 332 LTYGDMGKAPLDDSA-EHYIQPGSLSVIKAMADEVDN--GSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~-~~~~~pg~~~~~~~l~~~i~~--~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
.+++|+|.+...... +....+......+++.+.+.+ .++|.|+++||++.... ...+ .+.++.+ ..|++.+
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~-~~~~---~~~l~~~--~~~~~~v 75 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGK-AGTE---LELLSRL--NGRKHLI 75 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCC-hHHH---HHHHHhC--CCCeEEE
Confidence 478999987642110 000111122233445544433 37899999999996543 3222 2333332 3689999
Q ss_pred cCCCccC
Q 046241 409 IGNHERD 415 (638)
Q Consensus 409 ~GNHD~~ 415 (638)
+||||..
T Consensus 76 ~GNHD~~ 82 (168)
T cd07390 76 KGNHDSS 82 (168)
T ss_pred eCCCCch
Confidence 9999963
No 74
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.95 E-value=1.8e-05 Score=86.98 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=53.9
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHH-HHHHHHHhhhhhc-cCcceE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLV-EWDFFLHQISPVA-SRVSYM 406 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~-~wd~f~~~l~~l~-~~vP~~ 406 (638)
+||++++|+|.+........ .......++++.+.+.+.+||+||++||+.+...... ....+.+.+..+. ..+|++
T Consensus 1 mkilh~SDlHlG~~~~~~~~--~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~ 78 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSR--AAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLV 78 (407)
T ss_pred CEEEEEcccCCCCcccCccc--HHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEE
Confidence 58999999998743210000 0012344677777778899999999999996532221 1122333333333 258999
Q ss_pred EecCCCccC
Q 046241 407 TAIGNHERD 415 (638)
Q Consensus 407 ~v~GNHD~~ 415 (638)
+++||||..
T Consensus 79 ~I~GNHD~~ 87 (407)
T PRK10966 79 VLAGNHDSV 87 (407)
T ss_pred EEcCCCCCh
Confidence 999999963
No 75
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.94 E-value=1.6e-05 Score=85.42 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=55.7
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCC-cH-HHHHHHHH-hhhhhc-cCcc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATG-FL-VEWDFFLH-QISPVA-SRVS 404 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g-~~-~~wd~f~~-~l~~l~-~~vP 404 (638)
+||+++||+|.+..... ..........++++++.+.+.++|+||++||+.+... .. .......+ .++.+. ..+|
T Consensus 1 MKilhiSD~HLG~~~~~--~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~ 78 (340)
T PHA02546 1 MKILLIGDQHLGVRKDD--PWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGIT 78 (340)
T ss_pred CeEEEEeeecCCCcCCC--hhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 58999999998754211 0111113456778888888899999999999996542 21 22222222 233332 3799
Q ss_pred eEEecCCCccC
Q 046241 405 YMTAIGNHERD 415 (638)
Q Consensus 405 ~~~v~GNHD~~ 415 (638)
++.++||||..
T Consensus 79 v~~I~GNHD~~ 89 (340)
T PHA02546 79 LHVLVGNHDMY 89 (340)
T ss_pred EEEEccCCCcc
Confidence 99999999974
No 76
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.93 E-value=0.00015 Score=82.92 Aligned_cols=201 Identities=16% Similarity=0.136 Sum_probs=90.7
Q ss_pred cEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC-----CCccEEEEeCCcccCCCcHHHH---HHHHHhhhhh
Q 046241 328 VLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN-----GSVDSIFHIGDISYATGFLVEW---DFFLHQISPV 399 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~-----~~pDfvl~~GDi~y~~g~~~~w---d~f~~~l~~l 399 (638)
.++|+.+.|+|..-.... ........+..+++++++ ...-++|.+||+.... ....+ ....+.+..+
T Consensus 34 ~ltil~tnD~Hg~~~~~~----~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs-~~s~~~~g~~~i~~mN~~ 108 (551)
T PRK09558 34 KITILHTNDHHGHFWRNE----YGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGV-PESDLQDAEPDFRGMNLI 108 (551)
T ss_pred EEEEEEecccCCCccccc----cCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccce-EhhhhcCCchhHHHHhcC
Confidence 499999999997542210 011123334444444432 2335788899997432 22222 1112223222
Q ss_pred ccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhcc-ccccCCCCC--CCCCeEEEEECCEEE--EEEeCCCC--C-
Q 046241 400 ASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYE-TYFPMPIPA--RDKPWYSIEQAGVHF--TVMSTEHD--W- 471 (638)
Q Consensus 400 ~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~-~~f~~P~~~--~~~~yYsfd~G~v~f--i~LDT~~~--~- 471 (638)
..- +.++||||+++.. . .+... -....-++. ........+ .-..|.-++.+++++ |.+-+... +
T Consensus 109 --g~D-a~tlGNHEFD~G~-~--~L~~~--~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~ 180 (551)
T PRK09558 109 --GYD-AMAVGNHEFDNPL-S--VLRKQ--EKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIG 180 (551)
T ss_pred --CCC-EEcccccccCcCH-H--HHHHh--hccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEecccccccc
Confidence 233 4567999997643 1 00000 000000000 000000000 113577778888654 55543321 0
Q ss_pred CC-------cHHHHHHHHHHhccccC-CCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 472 SE-------NSEQYEWMKKDMASVDR-SKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 472 ~~-------~~~Q~~WL~~~La~~~r-~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
.+ -....+-+++.+++... .+..-+|++.|..+...............+..-+...+||++|.||.|..-
T Consensus 181 ~~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 181 NPEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHGSNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccCCCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 00 01112223333333221 367789999998885332111000000122222223379999999999854
No 77
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=2.4e-05 Score=78.19 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=44.4
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHH----hhhhhc-cCcceE
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLH----QISPVA-SRVSYM 406 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~----~l~~l~-~~vP~~ 406 (638)
++++|.|.++.. |.....+-.+++... .+.|.++++||+++.---...|.++.+ .+..++ ..+|++
T Consensus 1 lFISDlHL~~~~--------p~~t~~fl~Fl~~~a-~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~ 71 (237)
T COG2908 1 LFISDLHLGPKR--------PALTAFFLDFLREEA-AQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVY 71 (237)
T ss_pred CeeeccccCCCC--------cHHHHHHHHHHHhcc-ccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEE
Confidence 368999988532 222233333333322 356999999999954211123444333 333444 469999
Q ss_pred EecCCCcc
Q 046241 407 TAIGNHER 414 (638)
Q Consensus 407 ~v~GNHD~ 414 (638)
.++||||+
T Consensus 72 ~i~GN~Df 79 (237)
T COG2908 72 YIHGNHDF 79 (237)
T ss_pred EecCchHH
Confidence 99999996
No 78
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.90 E-value=9.4e-05 Score=84.04 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=101.1
Q ss_pred CccEEEEEEecCCCCCCCCCcccccC-CChHHHHHHHHHHhhCCC-ccEEEEeCCcccCCCcHHH---HHHHHHhhhhhc
Q 046241 326 SEVLRFLTYGDMGKAPLDDSAEHYIQ-PGSLSVIKAMADEVDNGS-VDSIFHIGDISYATGFLVE---WDFFLHQISPVA 400 (638)
Q Consensus 326 ~~~~rf~v~GD~g~~~~~~~~~~~~~-pg~~~~~~~l~~~i~~~~-pDfvl~~GDi~y~~g~~~~---wd~f~~~l~~l~ 400 (638)
...++|+...|+|..-.......... .+....+..+.+++++.. ..++|.+||+......... .....+.|..
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~-- 101 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNA-- 101 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhh--
Confidence 34599999999997654111110000 233445556666665544 4678899999954322211 1122223322
Q ss_pred cCcce-EEecCCCccCCCCCCCCcccCCCCCCccchhcc--ccccCCCC--CCCCCeEEEEECCEE--EEEEeCCC--CC
Q 046241 401 SRVSY-MTAIGNHERDYLGSSGSVYESPDSGGECGVAYE--TYFPMPIP--ARDKPWYSIEQAGVH--FTVMSTEH--DW 471 (638)
Q Consensus 401 ~~vP~-~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~--~~f~~P~~--~~~~~yYsfd~G~v~--fi~LDT~~--~~ 471 (638)
+++ ..++||||+++... ... +.-.+...++. +.+.-+.. ...+.|.-++.++++ +|.+.+.. .+
T Consensus 102 --m~yDa~tiGNHEFd~g~~---~l~--~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~~ 174 (517)
T COG0737 102 --LGYDAMTLGNHEFDYGLE---ALA--RLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPTW 174 (517)
T ss_pred --cCCcEEeecccccccCHH---HHH--HHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCccccc
Confidence 222 56899999975330 000 00000000000 00000011 112578889999855 45555321 11
Q ss_pred C--------CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHH-HHHHHHHHHHhCCCeEEEEcccccc
Q 046241 472 S--------ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNK-FVDAVEPLLLDNKVDLALFGHVHNY 540 (638)
Q Consensus 472 ~--------~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~-~r~~l~~Ll~k~~VdlvlsGH~H~Y 540 (638)
. .-....+++++.+.+...+...-+|++.|-+............ ...... .++|+++.||.|.+
T Consensus 175 ~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~~~~~~~~~-----~~iD~i~~GH~H~~ 247 (517)
T COG0737 175 EKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEVPGDVDVAV-----PGIDLIIGGHSHTV 247 (517)
T ss_pred ccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccccccccccc-----cCcceEeccCCccc
Confidence 0 1124556667766665433477899999999865432211100 000000 34999999999964
No 79
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.88 E-value=0.0003 Score=73.65 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=91.5
Q ss_pred EEEEEEecCCCCCCCCCcccccCCCh----HHHHHHHHHHhhCCCcc-EEEEeCCcccCCCcH--H--HHHHHHHhhhhh
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGS----LSVIKAMADEVDNGSVD-SIFHIGDISYATGFL--V--EWDFFLHQISPV 399 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~----~~~~~~l~~~i~~~~pD-fvl~~GDi~y~~g~~--~--~wd~f~~~l~~l 399 (638)
++|+..+|+|..-....... ...+. ...++++.++.++.+++ ++|.+||........ . .+....+.+.
T Consensus 6 ltILhtnD~Hg~l~~~~~~~-~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN-- 82 (282)
T cd07407 6 INFLHTTDTHGWLGGHLNDP-NYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFR-- 82 (282)
T ss_pred EEEEEEcccccCCcCcCCcc-cccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHH--
Confidence 99999999996422110000 00111 22234443333344555 667899998532111 1 2222233333
Q ss_pred ccCcce-EEecCCCccCCCCCCCCc-cc--CCCCCC--cc-chhcccc--ccCCCCCCCCCeEEEEEC-CEE--EEEEeC
Q 046241 400 ASRVSY-MTAIGNHERDYLGSSGSV-YE--SPDSGG--EC-GVAYETY--FPMPIPARDKPWYSIEQA-GVH--FTVMST 467 (638)
Q Consensus 400 ~~~vP~-~~v~GNHD~~~~~~sgs~-y~--~~ds~g--e~-~~~y~~~--f~~P~~~~~~~yYsfd~G-~v~--fi~LDT 467 (638)
.+++ ..++||||+++.. .+-. +. .+...- -| ...+... ...| ....|..++.+ +++ ||.+-+
T Consensus 83 --~mgyDa~tlGNHEFd~g~-~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~---~~~~y~i~~~~~G~kIgiiGltt 156 (282)
T cd07407 83 --MMPYDLLTIGNHELYNYE-VADDEYEGFVPSWGDRYLTSNVDITDDSGLLVP---IGSRYRKFTTKHGLRVLAFGFLF 156 (282)
T ss_pred --hcCCcEEeecccccCccc-cHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccc---cccceEEEEcCCCcEEEEEEEec
Confidence 3344 5689999996422 1100 00 000000 00 0000000 0001 11346666776 655 555544
Q ss_pred CCC-------CCC--cHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhC-CCe-EEEEcc
Q 046241 468 EHD-------WSE--NSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDN-KVD-LALFGH 536 (638)
Q Consensus 468 ~~~-------~~~--~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~-~Vd-lvlsGH 536 (638)
... +.. ...+.+|+.+.|++ .+...+|++.|....... ...+....+.++. ++| ++|.||
T Consensus 157 ~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~------~~~~~~~~la~~~~~id~~Ii~GH 227 (282)
T cd07407 157 DFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA------EFKVLHDAIRKIFPDTPIQFLGGH 227 (282)
T ss_pred ccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc------cHHHHHHHHHHhCCCCCEEEEeCC
Confidence 321 111 12233488777874 357789999998864321 1111122333444 567 799999
Q ss_pred ccccc
Q 046241 537 VHNYE 541 (638)
Q Consensus 537 ~H~Ye 541 (638)
.|...
T Consensus 228 sH~~~ 232 (282)
T cd07407 228 SHVRD 232 (282)
T ss_pred ccccc
Confidence 99753
No 80
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.86 E-value=0.00024 Score=81.19 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=90.8
Q ss_pred EEEEEEecCCCCCCCCCc------c-cccCCChHHHHHHHHHHhhCCCc-cEEEEeCCcccCCCcHHHH---HHHHHhhh
Q 046241 329 LRFLTYGDMGKAPLDDSA------E-HYIQPGSLSVIKAMADEVDNGSV-DSIFHIGDISYATGFLVEW---DFFLHQIS 397 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~------~-~~~~pg~~~~~~~l~~~i~~~~p-Dfvl~~GDi~y~~g~~~~w---d~f~~~l~ 397 (638)
++|+.+.|+|..-..... . .....+....+..+++++++..+ -++|.+||..... ....+ +...+.+.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs-~~~~~~~g~~~i~~~N 79 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGT-LYFTLFGGRADAALMN 79 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCc-cchhhcCCHHHHHHHh
Confidence 478999999865221100 0 01122445666666776665444 4778999998432 11111 22222332
Q ss_pred hhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCC---------CC----CCCCCeEEEEECC--EEE
Q 046241 398 PVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMP---------IP----ARDKPWYSIEQAG--VHF 462 (638)
Q Consensus 398 ~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P---------~~----~~~~~yYsfd~G~--v~f 462 (638)
.+ --=+.++||||+++.. . . ...+.+....| .. ..-..|.-++.++ +-|
T Consensus 80 ~~---g~Da~~lGNHEFd~G~-~--~----------l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgi 143 (550)
T TIGR01530 80 AA---GFDFFTLGNHEFDAGN-E--G----------LKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAI 143 (550)
T ss_pred cc---CCCEEEeccccccCCH-H--H----------HHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEE
Confidence 22 1226689999997532 0 0 00010000011 00 0123577778888 556
Q ss_pred EEEeCCCC-C---CCc-----HHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHh-CCCeEE
Q 046241 463 TVMSTEHD-W---SEN-----SEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLD-NKVDLA 532 (638)
Q Consensus 463 i~LDT~~~-~---~~~-----~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k-~~Vdlv 532 (638)
|.|.+... . .++ ....+=+++..+.....+..-+|++.|..... + ..|.++ .+||++
T Consensus 144 iGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~~g~D~II~lsH~g~~~------d-------~~la~~~~~iD~I 210 (550)
T TIGR01530 144 IGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQQGINKIILLSHAGFEK------N-------CEIAQKINDIDVI 210 (550)
T ss_pred EEeecCcccccccCCCCceEECCHHHHHHHHHHHHHhCCCCEEEEEecCCcHH------H-------HHHHhcCCCCCEE
Confidence 77754211 0 111 01112222222222224567899999976421 1 123333 389999
Q ss_pred EEccccccc
Q 046241 533 LFGHVHNYE 541 (638)
Q Consensus 533 lsGH~H~Ye 541 (638)
|.||.|.+-
T Consensus 211 igGHsH~~~ 219 (550)
T TIGR01530 211 VSGDSHYLL 219 (550)
T ss_pred EeCCCCccc
Confidence 999999965
No 81
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.74 E-value=0.00042 Score=73.61 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhC-CCeEEEEccccccc
Q 046241 491 SKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDN-KVDLALFGHVHNYE 541 (638)
Q Consensus 491 ~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~-~VdlvlsGH~H~Ye 541 (638)
++..-+|++.|-.-+. .+ ..|.++. +||++|.||.|.+-
T Consensus 206 ~gvD~II~LsH~g~~~-----~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-----IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-----hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4567899999974211 11 1234443 89999999999865
No 82
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.64 E-value=0.00017 Score=68.18 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=36.0
Q ss_pred HHHHHHHH-HhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecCCCc
Q 046241 356 SVIKAMAD-EVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIGNHE 413 (638)
Q Consensus 356 ~~~~~l~~-~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~GNHD 413 (638)
.+++++.+ .-++.++|++|.+||+.-.+....+|..+..- .....+|.|++-||||
T Consensus 12 ~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g--~~~~pipTyf~ggn~~ 68 (150)
T cd07380 12 ALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDG--SKKVPIPTYFLGGNNP 68 (150)
T ss_pred HHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcC--CccCCCCEEEECCCCC
Confidence 44455544 22457899999999998554433344444432 2235789999999985
No 83
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.63 E-value=7.4e-05 Score=72.25 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=52.0
Q ss_pred EEEecCCCCCCCCCcc-cccCCC--hHHHHHHHHHHhhCCCccEEEEeCCcccCCCc--HHHHHHHHHhhhhhccCcceE
Q 046241 332 LTYGDMGKAPLDDSAE-HYIQPG--SLSVIKAMADEVDNGSVDSIFHIGDISYATGF--LVEWDFFLHQISPVASRVSYM 406 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~-~~~~pg--~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~--~~~wd~f~~~l~~l~~~vP~~ 406 (638)
++++|+|.+....... ...-|. ....++++.+.+++.+||.|+++||+.+.... ..++... .........+|++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 79 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEV-AFLRLLAKDVDVI 79 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHH-HHHHhccCCCeEE
Confidence 4789999875321000 111111 23677888888888999999999999965432 1222222 1233334678999
Q ss_pred EecCCCccC
Q 046241 407 TAIGNHERD 415 (638)
Q Consensus 407 ~v~GNHD~~ 415 (638)
.++||||..
T Consensus 80 ~i~GNHD~~ 88 (172)
T cd07391 80 LIRGNHDGG 88 (172)
T ss_pred EEcccCccc
Confidence 999999963
No 84
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.60 E-value=0.0011 Score=78.30 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred CCCCCCCCccEEEEEEecCCCCCCCCC--cccccCCChHHHHHHHHHHhhCCCc-cEEEEeCCcccC
Q 046241 319 TPPAGGSSEVLRFLTYGDMGKAPLDDS--AEHYIQPGSLSVIKAMADEVDNGSV-DSIFHIGDISYA 382 (638)
Q Consensus 319 T~p~~~~~~~~rf~v~GD~g~~~~~~~--~~~~~~pg~~~~~~~l~~~i~~~~p-Dfvl~~GDi~y~ 382 (638)
+.|..+..-.++|+...|+|..-..-. .......+....+..+++++++.++ -++|..||++..
T Consensus 106 ~~~~~~~~~~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQG 172 (814)
T PRK11907 106 SKPVEGQTVDVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQG 172 (814)
T ss_pred CCCccCCceEEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCC
Confidence 334444434599999999997632110 0000112234455566666655444 478889999853
No 85
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.45 E-value=0.00026 Score=71.58 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=57.0
Q ss_pred EEEEEEecCCCCCCCCCcc-cc-cCC-ChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcce
Q 046241 329 LRFLTYGDMGKAPLDDSAE-HY-IQP-GSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~-~~-~~p-g~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~ 405 (638)
-+.++++|+|.+....... .. ..+ ...++++++.+.+++.+||.++++||+.++......|+.+.+.++.+ ..++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~--~~~v 92 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVT--FRDL 92 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhc--CCcE
Confidence 4678999999874321100 01 111 22457778888777889999999999997654435566555555543 3589
Q ss_pred EEecCCCcc
Q 046241 406 MTAIGNHER 414 (638)
Q Consensus 406 ~~v~GNHD~ 414 (638)
+.++||||.
T Consensus 93 ~~V~GNHD~ 101 (225)
T TIGR00024 93 ILIRGNHDA 101 (225)
T ss_pred EEECCCCCC
Confidence 999999995
No 86
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.44 E-value=0.00037 Score=71.22 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=49.7
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC-----CccEEEEeCCcccCCC----c---------HHHHHHHH
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG-----SVDSIFHIGDISYATG----F---------LVEWDFFL 393 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~-----~pDfvl~~GDi~y~~g----~---------~~~wd~f~ 393 (638)
++++|+|.+.... ....++.+.+.+... ++|.|+++||++.... . ...++.+.
T Consensus 2 ~~iSDlHl~~~~~---------~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (243)
T cd07386 2 VFISDVHVGSKTF---------LEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAA 72 (243)
T ss_pred EEecccCCCchhh---------hHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHH
Confidence 6899999754211 122334555544333 5799999999996521 0 12345566
Q ss_pred HhhhhhccCcceEEecCCCccC
Q 046241 394 HQISPVASRVSYMTAIGNHERD 415 (638)
Q Consensus 394 ~~l~~l~~~vP~~~v~GNHD~~ 415 (638)
+.++.+...+|+++++||||..
T Consensus 73 ~~l~~L~~~~~v~~ipGNHD~~ 94 (243)
T cd07386 73 EYLSDVPSHIKIIIIPGNHDAV 94 (243)
T ss_pred HHHHhcccCCeEEEeCCCCCcc
Confidence 6777777789999999999973
No 87
>PRK04036 DNA polymerase II small subunit; Validated
Probab=97.42 E-value=0.00047 Score=77.91 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=54.8
Q ss_pred ccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh---------CCCccEEEEeCCcccCCCc------------
Q 046241 327 EVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD---------NGSVDSIFHIGDISYATGF------------ 385 (638)
Q Consensus 327 ~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~---------~~~pDfvl~~GDi~y~~g~------------ 385 (638)
+..++++++|+|.+.... ....++.+++.+. +.++|.++++||++...+.
T Consensus 242 ~~~~i~~ISDlHlgs~~~---------~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~ 312 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEF---------LEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVD 312 (504)
T ss_pred CccEEEEEcccCCCCcch---------hHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchh
Confidence 348999999999765321 1233445555554 5689999999999964221
Q ss_pred -HHHHHHHHHhhhhhccCcceEEecCCCccC
Q 046241 386 -LVEWDFFLHQISPVASRVSYMTAIGNHERD 415 (638)
Q Consensus 386 -~~~wd~f~~~l~~l~~~vP~~~v~GNHD~~ 415 (638)
..+++.+.+.++.+...+|+++++||||..
T Consensus 313 ~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 313 IYEQYEAAAEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred hHHHHHHHHHHHHhhhcCCeEEEecCCCcch
Confidence 122345556666776789999999999973
No 88
>PHA02239 putative protein phosphatase
Probab=97.40 E-value=0.00039 Score=70.83 Aligned_cols=68 Identities=16% Similarity=0.341 Sum_probs=44.3
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC--CccEEEEeCCcccCCCcHHH--HHHHHHhhhhhccCcc
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG--SVDSIFHIGDISYATGFLVE--WDFFLHQISPVASRVS 404 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~--~pDfvl~~GDi~y~~g~~~~--wd~f~~~l~~l~~~vP 404 (638)
++++++||+|.. ...++++++.+... ..|.++++||+++. |.... .+.+++. +....+
T Consensus 1 m~~~~IsDIHG~--------------~~~l~~ll~~i~~~~~~~d~li~lGD~iDr-G~~s~~v~~~l~~~---~~~~~~ 62 (235)
T PHA02239 1 MAIYVVPDIHGE--------------YQKLLTIMDKINNERKPEETIVFLGDYVDR-GKRSKDVVNYIFDL---MSNDDN 62 (235)
T ss_pred CeEEEEECCCCC--------------HHHHHHHHHHHhhcCCCCCEEEEecCcCCC-CCChHHHHHHHHHH---hhcCCC
Confidence 478999999942 23456666666432 35999999999964 33221 2222222 223457
Q ss_pred eEEecCCCcc
Q 046241 405 YMTAIGNHER 414 (638)
Q Consensus 405 ~~~v~GNHD~ 414 (638)
+++++||||.
T Consensus 63 ~~~l~GNHE~ 72 (235)
T PHA02239 63 VVTLLGNHDD 72 (235)
T ss_pred eEEEECCcHH
Confidence 8999999996
No 89
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.30 E-value=0.0028 Score=78.77 Aligned_cols=193 Identities=17% Similarity=0.251 Sum_probs=94.0
Q ss_pred cEEEEEEecCCCCCCCC--CcccccCCChHHHHHHHHHHhhCCCccEEE-EeCCcccCCCcHHHH------------HHH
Q 046241 328 VLRFLTYGDMGKAPLDD--SAEHYIQPGSLSVIKAMADEVDNGSVDSIF-HIGDISYATGFLVEW------------DFF 392 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~--~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl-~~GDi~y~~g~~~~w------------d~f 392 (638)
.++|+..+|+|..-..- ........+....+..+++++++.+++.++ ..||++.... ...| ...
T Consensus 41 ~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~-l~~~~~~~~~~~~~~~~~~ 119 (1163)
T PRK09419 41 NIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNP-LGEYAVKDNILFKNKTHPM 119 (1163)
T ss_pred EEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCh-hhhHHhhhccccCCCcCHH
Confidence 39999999999753211 000011223456667777777766676555 5999995431 1111 111
Q ss_pred HHhhhhhccCcce-EEecCCCccCCCCCCCCcccCCCCCCccchhccccccCC--------CCCC--CCCeEEEEE----
Q 046241 393 LHQISPVASRVSY-MTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMP--------IPAR--DKPWYSIEQ---- 457 (638)
Q Consensus 393 ~~~l~~l~~~vP~-~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P--------~~~~--~~~yYsfd~---- 457 (638)
.+.|.. +.+ ..++||||+++... .. ....+....| ..+. -..|--.+.
T Consensus 120 i~~mN~----lgyDa~~lGNHEFd~G~~---~L----------~~~~~~a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~ 182 (1163)
T PRK09419 120 IKAMNA----LGYDAGTLGNHEFNYGLD---FL----------DGTIKGANFPVLNANVKYKNGKNVYTPYKIKEKTVTD 182 (1163)
T ss_pred HHHHhh----cCccEEeecccccccCHH---HH----------HHHHhcCCCCEEEeeeecCCCCcccCCEEEEEEEeec
Confidence 122221 222 56799999975320 00 0000000011 0000 124555555
Q ss_pred -----CCEE--EEEEeCCC--CCC----Cc----HHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHH
Q 046241 458 -----AGVH--FTVMSTEH--DWS----EN----SEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAV 520 (638)
Q Consensus 458 -----G~v~--fi~LDT~~--~~~----~~----~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l 520 (638)
++++ ||.+-+.. .|. .+ ..-.+=+++.+++..+.+...+|++.|...-........+ ...
T Consensus 183 ~~g~~~gvkIgiiG~~~p~~~~~~~~~~~g~~~~~d~v~~~~~~v~~lk~~gaDvII~l~H~G~~~~~~~~~~e---n~~ 259 (1163)
T PRK09419 183 ENGKKQGVKVGYIGFVPPQIMTWDKKNLKGKVEVKNIVEEANKTIPEMKKGGADVIVALAHSGIESEYQSSGAE---DSV 259 (1163)
T ss_pred cCCCCCCeEEEEEecCCcchhhcchhhccCcEEECCHHHHHHHHHHHHHhcCCCEEEEEeccCcCCCCCCCCcc---hHH
Confidence 5555 45443321 111 01 1112223333333322467889999998875432211111 122
Q ss_pred HHHHHh-CCCeEEEEccccccc
Q 046241 521 EPLLLD-NKVDLALFGHVHNYE 541 (638)
Q Consensus 521 ~~Ll~k-~~VdlvlsGH~H~Ye 541 (638)
..|.++ -+||+++.||.|..-
T Consensus 260 ~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 260 YDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred HHHHHhCCCCcEEEeCCCcccc
Confidence 344444 489999999999975
No 90
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.23 E-value=0.0064 Score=71.84 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=32.6
Q ss_pred cEEEEEEecCCCCCCCC--CcccccCCChHHHHHHHHHHhhCCCc-cEEEEeCCcccC
Q 046241 328 VLRFLTYGDMGKAPLDD--SAEHYIQPGSLSVIKAMADEVDNGSV-DSIFHIGDISYA 382 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~--~~~~~~~pg~~~~~~~l~~~i~~~~p-Dfvl~~GDi~y~ 382 (638)
.++|+...|+|..-..- ........+....+..+++++++.++ -++|..||++..
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqG 96 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQG 96 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCC
Confidence 39999999999763211 00000112234455666666655444 478889999843
No 91
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.21 E-value=0.00088 Score=69.80 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=45.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-CCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-NGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
++++++||+|. ....++++++.+. +.+.|.++++||+++.+ ..+ .+..+.+..+ ..++.+
T Consensus 1 M~~~vIGDIHG--------------~~~~l~~ll~~~~~~~~~D~li~lGDlVdrG-p~s--~~vl~~l~~l--~~~~~~ 61 (275)
T PRK00166 1 MATYAIGDIQG--------------CYDELQRLLEKIDFDPAKDTLWLVGDLVNRG-PDS--LEVLRFVKSL--GDSAVT 61 (275)
T ss_pred CcEEEEEccCC--------------CHHHHHHHHHhcCCCCCCCEEEEeCCccCCC-cCH--HHHHHHHHhc--CCCeEE
Confidence 46899999994 3456677777664 34789999999999643 322 1223333332 346889
Q ss_pred ecCCCcc
Q 046241 408 AIGNHER 414 (638)
Q Consensus 408 v~GNHD~ 414 (638)
+.||||.
T Consensus 62 VlGNHD~ 68 (275)
T PRK00166 62 VLGNHDL 68 (275)
T ss_pred EecChhH
Confidence 9999996
No 92
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.14 E-value=0.0012 Score=65.92 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=43.8
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC-CCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN-GSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~-~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
|++++||+|.. ...++++++.+.. .++|.++++||+++.+.... +.++.+. ..+++.+
T Consensus 2 ri~~isDiHg~--------------~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~---~~~~~l~----~~~~~~v 60 (207)
T cd07424 2 RDFVVGDIHGH--------------YSLLQKALDAVGFDPARDRLISVGDLIDRGPESL---ACLELLL----EPWFHAV 60 (207)
T ss_pred CEEEEECCCCC--------------HHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHH---HHHHHHh----cCCEEEe
Confidence 68999999942 3456667666543 46899999999996543321 2233332 2468899
Q ss_pred cCCCcc
Q 046241 409 IGNHER 414 (638)
Q Consensus 409 ~GNHD~ 414 (638)
.||||.
T Consensus 61 ~GNhe~ 66 (207)
T cd07424 61 RGNHEQ 66 (207)
T ss_pred ECCChH
Confidence 999996
No 93
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.09 E-value=0.0063 Score=70.67 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=31.2
Q ss_pred EEEEEEecCCCCCCCCC--cccccCCChHHHHHHHHHHhhCCCc-cEEEEeCCcccC
Q 046241 329 LRFLTYGDMGKAPLDDS--AEHYIQPGSLSVIKAMADEVDNGSV-DSIFHIGDISYA 382 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~--~~~~~~pg~~~~~~~l~~~i~~~~p-Dfvl~~GDi~y~ 382 (638)
++++...|+|..-..-. .......+....+..+++++++..+ -++|..||++..
T Consensus 3 l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qG 59 (626)
T TIGR01390 3 LRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQG 59 (626)
T ss_pred EEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCC
Confidence 89999999997632210 0000111234555566666654433 477889999853
No 94
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.06 E-value=0.013 Score=60.36 Aligned_cols=170 Identities=15% Similarity=0.188 Sum_probs=94.5
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-----------CCCccEEEEeCCcccCCCc--------------
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-----------NGSVDSIFHIGDISYATGF-------------- 385 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-----------~~~pDfvl~~GDi~y~~g~-------------- 385 (638)
+++++|+|.+.... ....++.+.+.+. ..++.-+|++||.+...+.
T Consensus 2 i~~vSgL~ig~~~~---------~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~ 72 (257)
T cd07387 2 IALVSGLGLGGNAE---------SSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKK 72 (257)
T ss_pred EEEEcccccCCCcc---------chHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccc
Confidence 68899999876421 1122333333332 2345579999999964321
Q ss_pred -----HHHHHHHHHhhhhhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhcc-ccccCCC-----CCCCCCeEE
Q 046241 386 -----LVEWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYE-TYFPMPI-----PARDKPWYS 454 (638)
Q Consensus 386 -----~~~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~-~~f~~P~-----~~~~~~yYs 454 (638)
..+.+++-+.+..+.+.+|+.+.|||||-.... .| +.++. ..|+.-. ..-.++ |.
T Consensus 73 ~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~-------lP------Qqplh~~lfp~s~~~~~~~~vtNP-~~ 138 (257)
T cd07387 73 SSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHS-------LP------QQPLHRCLFPKSSNYSTLNLVTNP-YE 138 (257)
T ss_pred cchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCccccc-------CC------CCCCCHHHhhcccccCCcEEeCCC-eE
Confidence 223445555666777899999999999963211 11 11111 1111000 001233 46
Q ss_pred EEECCEEEEEEeCCC-----CCCCcHHHHHHHHHHhccccCCCCCeEEEEeccCC-ccCCC-----CCCCHHHHHHHHHH
Q 046241 455 IEQAGVHFTVMSTEH-----DWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPM-YSSLS-----SSVDNKFVDAVEPL 523 (638)
Q Consensus 455 fd~G~v~fi~LDT~~-----~~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~-yss~~-----~~~~~~~r~~l~~L 523 (638)
|++++++|++.+... .+...+.-.+.|+..|+- | |--+ +.... ...| ++
T Consensus 139 ~~i~g~~vLgtsGqni~Di~ky~~~~~~l~~me~~L~w--r----------HlaPTaPDTL~~yP~~~~D--------pf 198 (257)
T cd07387 139 FSIDGVRVLGTSGQNVDDILKYSSLESRLDILERTLKW--R----------HIAPTAPDTLWCYPFTDRD--------PF 198 (257)
T ss_pred EEECCEEEEEECCCCHHHHHHhCCCCCHHHHHHHHHHh--c----------ccCCCCCCccccccCCCCC--------ce
Confidence 999999999887753 123344456778887763 1 2222 11110 0111 22
Q ss_pred HHhCCCeEEEEcccccccee
Q 046241 524 LLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 524 l~k~~VdlvlsGH~H~YeRt 543 (638)
+-+.-.+++++||.|.|+..
T Consensus 199 vi~~~PhVyf~Gnq~~f~t~ 218 (257)
T cd07387 199 ILEECPHVYFAGNQPKFGTK 218 (257)
T ss_pred eecCCCCEEEeCCCcceeee
Confidence 22344889999999999863
No 95
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.03 E-value=0.0014 Score=66.77 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=44.6
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC----------CCccEEEEeCCcccCCCcHHHHHHHHHhhhhh
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN----------GSVDSIFHIGDISYATGFLVEWDFFLHQISPV 399 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~----------~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l 399 (638)
|++++||+|. ....++++++.+.- .+.|.++++||+++.+... .+..+.+..+
T Consensus 2 ~i~vigDIHG--------------~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s---~evl~~l~~l 64 (234)
T cd07423 2 PFDIIGDVHG--------------CYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDS---PEVLRLVMSM 64 (234)
T ss_pred CeEEEEECCC--------------CHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCH---HHHHHHHHHH
Confidence 7899999995 34567777777621 1368999999999643222 1223333333
Q ss_pred ccCcceEEecCCCcc
Q 046241 400 ASRVSYMTAIGNHER 414 (638)
Q Consensus 400 ~~~vP~~~v~GNHD~ 414 (638)
...-.+..+.||||.
T Consensus 65 ~~~~~~~~v~GNHE~ 79 (234)
T cd07423 65 VAAGAALCVPGNHDN 79 (234)
T ss_pred hhCCcEEEEECCcHH
Confidence 223457899999996
No 96
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.99 E-value=0.011 Score=68.86 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=45.5
Q ss_pred cEEEEEEecCCCCCCCCC--cccccCCChHHHHHHHHHHhhCCCc-cEEEEeCCcccCCCcHHHHHH-----------HH
Q 046241 328 VLRFLTYGDMGKAPLDDS--AEHYIQPGSLSVIKAMADEVDNGSV-DSIFHIGDISYATGFLVEWDF-----------FL 393 (638)
Q Consensus 328 ~~rf~v~GD~g~~~~~~~--~~~~~~pg~~~~~~~l~~~i~~~~p-Dfvl~~GDi~y~~g~~~~wd~-----------f~ 393 (638)
.++|+...|+|..-..-. .......+....+..+++++++..+ -++|..||++... ....|.. ..
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGs-p~~~~~~~~~~~~g~~~p~i 103 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGS-PLGDYMAAKGLKAGDVHPVY 103 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCc-hhhhhhhhccccCCCcchHH
Confidence 499999999997532110 0000111234555666666655444 4778899998532 2222211 12
Q ss_pred HhhhhhccCcce-EEecCCCccCC
Q 046241 394 HQISPVASRVSY-MTAIGNHERDY 416 (638)
Q Consensus 394 ~~l~~l~~~vP~-~~v~GNHD~~~ 416 (638)
+.|.. +.| ..++||||+++
T Consensus 104 ~amN~----lgyDa~tlGNHEFd~ 123 (649)
T PRK09420 104 KAMNT----LDYDVGNLGNHEFNY 123 (649)
T ss_pred HHHHh----cCCcEEeccchhhhc
Confidence 22222 222 56899999975
No 97
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.93 E-value=0.0018 Score=66.32 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=44.0
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC---------CCccEEEEeCCcccCCCcHHHHHHHHHhhhhh
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN---------GSVDSIFHIGDISYATGFLVEWDFFLHQISPV 399 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~---------~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l 399 (638)
+|++++||+|. ....+.++++.+.- ..-|.++++||+++. |..+. +.++.+..+
T Consensus 1 ~~~~vIGDIHG--------------~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDR-Gp~S~--~vl~~~~~~ 63 (245)
T PRK13625 1 MKYDIIGDIHG--------------CYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDR-GPHSL--RMIEIVWEL 63 (245)
T ss_pred CceEEEEECcc--------------CHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCC-CcChH--HHHHHHHHH
Confidence 36899999994 34566777766532 134789999999964 43221 122222222
Q ss_pred ccCcceEEecCCCcc
Q 046241 400 ASRVSYMTAIGNHER 414 (638)
Q Consensus 400 ~~~vP~~~v~GNHD~ 414 (638)
...-.++++.||||.
T Consensus 64 ~~~~~~~~l~GNHE~ 78 (245)
T PRK13625 64 VEKKAAYYVPGNHCN 78 (245)
T ss_pred hhCCCEEEEeCccHH
Confidence 234578999999995
No 98
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.92 E-value=0.0022 Score=64.58 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=44.3
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-CCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-NGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
=|++++||+|.. ...++++.+.+. ..+.|.++++||+++.+....+ .++.+. ...+..
T Consensus 15 ~ri~visDiHg~--------------~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~---~l~~l~----~~~~~~ 73 (218)
T PRK09968 15 RHIWVVGDIHGE--------------YQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLN---VLRLLN----QPWFIS 73 (218)
T ss_pred CeEEEEEeccCC--------------HHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHH---HHHHHh----hCCcEE
Confidence 389999999953 456677777665 4578999999999964433221 222222 124678
Q ss_pred ecCCCcc
Q 046241 408 AIGNHER 414 (638)
Q Consensus 408 v~GNHD~ 414 (638)
+.||||.
T Consensus 74 v~GNHE~ 80 (218)
T PRK09968 74 VKGNHEA 80 (218)
T ss_pred EECchHH
Confidence 9999996
No 99
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.91 E-value=0.018 Score=58.55 Aligned_cols=88 Identities=20% Similarity=0.151 Sum_probs=50.0
Q ss_pred CeEEEEECCE--EEEEEeCCCCCC----------CcHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHH
Q 046241 451 PWYSIEQAGV--HFTVMSTEHDWS----------ENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVD 518 (638)
Q Consensus 451 ~yYsfd~G~v--~fi~LDT~~~~~----------~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~ 518 (638)
.+..++.+++ .|+.+.+..... ....-.+-+++.++++. ++...+||+.|-..-... ... ....
T Consensus 122 ~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr-~~~D~vIv~~H~G~e~~~--~p~-~~~~ 197 (239)
T cd07381 122 RPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAK-KKADIVIVSLHWGVEYSY--YPT-PEQR 197 (239)
T ss_pred CcEEEEECCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHh-hcCCEEEEEecCcccCCC--CCC-HHHH
Confidence 4556778874 455555432110 01111234555555543 247899999997552211 111 2233
Q ss_pred HHHHHHHhCCCeEEEEccccccce
Q 046241 519 AVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 519 ~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
.+...+.+.++|+++.||.|..+-
T Consensus 198 ~la~~l~~~G~D~IiG~H~Hv~q~ 221 (239)
T cd07381 198 ELARALIDAGADLVIGHHPHVLQG 221 (239)
T ss_pred HHHHHHHHCCCCEEEcCCCCcCCC
Confidence 455555567999999999998763
No 100
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=96.87 E-value=0.0074 Score=63.38 Aligned_cols=171 Identities=22% Similarity=0.282 Sum_probs=94.7
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHH--HHhhCCCccEEEEeCCcccCCC--------cHHHH---HHHHHh
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMA--DEVDNGSVDSIFHIGDISYATG--------FLVEW---DFFLHQ 395 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~--~~i~~~~pDfvl~~GDi~y~~g--------~~~~w---d~f~~~ 395 (638)
+|+++-|++|..- .++.+.+. +.....++|++|+.||+---+. ....| ..|++.
T Consensus 1 MrIaVqGCcHG~L-------------d~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~Y 67 (456)
T KOG2863|consen 1 MRIAVQGCCHGEL-------------DNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKY 67 (456)
T ss_pred CceeeecccchhH-------------HHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHH
Confidence 5789999998531 12222222 2222358999999999952221 11223 234443
Q ss_pred hh-hhccCcceEEecCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCC--CCCCeE-----EEEECCEEEEEEeC
Q 046241 396 IS-PVASRVSYMTAIGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPA--RDKPWY-----SIEQAGVHFTVMST 467 (638)
Q Consensus 396 l~-~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~--~~~~yY-----sfd~G~v~fi~LDT 467 (638)
.. .+.+.+|.+++=||||... |.. .+|..+ ..+.|| ...+|++|+-.|+.
T Consensus 68 Ysge~~APVlTIFIGGNHEAsn--------------------yL~--eLpyGGwVApNIyYlG~agVv~~~gvRIggiSG 125 (456)
T KOG2863|consen 68 YSGEIKAPVLTIFIGGNHEASN--------------------YLQ--ELPYGGWVAPNIYYLGYAGVVNFGGVRIGGISG 125 (456)
T ss_pred hCCcccCceeEEEecCchHHHH--------------------HHH--hcccCceeccceEEeeecceEEECCEEEeeccc
Confidence 32 3446788999999999621 111 111111 012333 46789999988875
Q ss_pred ---CCCCCC-----------------cHHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHH-------H----
Q 046241 468 ---EHDWSE-----------------NSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNK-------F---- 516 (638)
Q Consensus 468 ---~~~~~~-----------------~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~-------~---- 516 (638)
++++.. .-.+++ ...|.+. +.|-=|++.|.-+-....++.... +
T Consensus 126 I~k~~dy~kgh~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqei 200 (456)
T KOG2863|consen 126 IYKEHDYRKGHFEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEI 200 (456)
T ss_pred hhhhhhcccCCCCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHH
Confidence 233221 011111 1223332 345558888976644332222111 1
Q ss_pred ------HHHHHHHHHhCCCeEEEEccccc
Q 046241 517 ------VDAVEPLLLDNKVDLALFGHVHN 539 (638)
Q Consensus 517 ------r~~l~~Ll~k~~VdlvlsGH~H~ 539 (638)
...++.||++.+...+|+.|.|.
T Consensus 201 e~~~LGSp~~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 201 EEGKLGSPALEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred hcCCcCChHHHHHHHHhCcchhhhhhHhh
Confidence 34667899999999999999997
No 101
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.84 E-value=0.0034 Score=65.42 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=42.3
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC------CCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCc
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN------GSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRV 403 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~------~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~v 403 (638)
+++++||+|.. ...++++.+.+.. ...+.++++||+++.+....+--.++..+.......
T Consensus 3 ~iyaIGDIHG~--------------~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~ 68 (304)
T cd07421 3 VVICVGDIHGY--------------ISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQ 68 (304)
T ss_pred eEEEEEeccCC--------------HHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhccccc
Confidence 68999999953 4556666555432 235789999999965433322222222222111122
Q ss_pred ceEEecCCCcc
Q 046241 404 SYMTAIGNHER 414 (638)
Q Consensus 404 P~~~v~GNHD~ 414 (638)
.++++.||||.
T Consensus 69 ~vv~LrGNHE~ 79 (304)
T cd07421 69 RHVFLCGNHDF 79 (304)
T ss_pred ceEEEecCChH
Confidence 47889999995
No 102
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.84 E-value=0.0027 Score=64.08 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=43.1
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC--------CccEEEEeCCcccCCCcHHHHHHHHHhhhhhccC
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG--------SVDSIFHIGDISYATGFLVEWDFFLHQISPVASR 402 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~--------~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~ 402 (638)
+.++||+|. ....++++++.+... ..|.++++||+++.+.... +.++.+..+...
T Consensus 1 ~~vIGDIHG--------------~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~---~vl~~l~~l~~~ 63 (222)
T cd07413 1 YDFIGDIHG--------------HAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIR---ELLEIVKSMVDA 63 (222)
T ss_pred CEEEEeccC--------------CHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHH---HHHHHHHHhhcC
Confidence 368999995 356677777776422 4689999999996543222 122333333223
Q ss_pred cceEEecCCCcc
Q 046241 403 VSYMTAIGNHER 414 (638)
Q Consensus 403 vP~~~v~GNHD~ 414 (638)
-.++.+.||||.
T Consensus 64 ~~~~~l~GNHE~ 75 (222)
T cd07413 64 GHALAVMGNHEF 75 (222)
T ss_pred CCEEEEEccCcH
Confidence 368889999996
No 103
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=96.82 E-value=0.0027 Score=63.90 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=44.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC-CccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG-SVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~-~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
-|++++||+|. ....++++++.+... +.|-++++||+++.+....+ ..+.+. ...+..
T Consensus 17 ~ri~vigDIHG--------------~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~---vl~~l~----~~~~~~ 75 (218)
T PRK11439 17 RHIWLVGDIHG--------------CFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLR---CLQLLE----EHWVRA 75 (218)
T ss_pred CeEEEEEcccC--------------CHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHH---HHHHHH----cCCceE
Confidence 48999999995 356677788777543 68999999999965432221 222222 124678
Q ss_pred ecCCCcc
Q 046241 408 AIGNHER 414 (638)
Q Consensus 408 v~GNHD~ 414 (638)
+.||||.
T Consensus 76 v~GNHE~ 82 (218)
T PRK11439 76 VRGNHEQ 82 (218)
T ss_pred eeCchHH
Confidence 9999995
No 104
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=96.79 E-value=0.17 Score=51.16 Aligned_cols=180 Identities=17% Similarity=0.165 Sum_probs=101.0
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
+|++++||+=.. ||...+.+.|-....+.++||+|..|-++ +.|..--|+.+.++++. .+- +++
T Consensus 1 mriLfiGDvvGk-----------~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENa-a~G~Git~k~y~~l~~~---G~d-viT 64 (266)
T COG1692 1 MRILFIGDVVGK-----------PGRKAVKEHLPQLKSKYKIDFVIVNGENA-AGGFGITEKIYKELLEA---GAD-VIT 64 (266)
T ss_pred CeEEEEecccCc-----------chHHHHHHHhHHHHHhhcCcEEEEcCccc-cCCcCCCHHHHHHHHHh---CCC-EEe
Confidence 589999997532 33334444444434557899999999998 56665556666555542 333 457
Q ss_pred cCCCccCCCCCCCCcccCCCCCCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCC--CCCCC-cHHHHHHHHHHh
Q 046241 409 IGNHERDYLGSSGSVYESPDSGGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTE--HDWSE-NSEQYEWMKKDM 485 (638)
Q Consensus 409 ~GNHD~~~~~~sgs~y~~~ds~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~--~~~~~-~~~Q~~WL~~~L 485 (638)
.|||=++-.. .+..-+. .....+-.+.|....+..|+-|+..+..+.+++-. ..... ...-++-+++.|
T Consensus 65 ~GNH~wd~~e----i~~~i~~----~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~ 136 (266)
T COG1692 65 LGNHTWDQKE----ILDFIDN----ADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLL 136 (266)
T ss_pred cccccccchH----HHHHhhc----ccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHH
Confidence 9999874322 1100000 00111222334444466688888877666666542 21111 222344456666
Q ss_pred ccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 486 ASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 486 a~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
...+ .+++.+||-+|.--.+.. .-.-++-+-.|.+|+-=|+|....-
T Consensus 137 ~~~~-~~~~~iiVDFHAEtTSEK----------~a~g~yldGrvsavvGTHTHV~TaD 183 (266)
T COG1692 137 DEIK-LGTDLIIVDFHAETTSEK----------NAFGWYLDGRVSAVVGTHTHVPTAD 183 (266)
T ss_pred HhCc-cCCceEEEEccccchhhh----------hhhheEEcCeEEEEEeccCcccccc
Confidence 6543 456788998995432211 1112234557899999999986543
No 105
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.76 E-value=0.0034 Score=62.93 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=43.9
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhcc-CcceEEecC
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVAS-RVSYMTAIG 410 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~-~vP~~~v~G 410 (638)
.++||+|.. ...+.++++.+.....|.++++||+++.. ... .+..+.+..+.. ..+++.+.|
T Consensus 1 ~~igDiHg~--------------~~~l~~~l~~~~~~~~d~li~lGD~vdrg-~~~--~~~l~~l~~~~~~~~~~~~l~G 63 (225)
T cd00144 1 YVIGDIHGC--------------LDDLLRLLEKIGFPPNDKLIFLGDYVDRG-PDS--VEVIDLLLALKILPDNVILLRG 63 (225)
T ss_pred CEEeCCCCC--------------HHHHHHHHHHhCCCCCCEEEEECCEeCCC-CCc--HHHHHHHHHhcCCCCcEEEEcc
Confidence 378999942 35566777777667899999999999653 221 122222222211 457899999
Q ss_pred CCccC
Q 046241 411 NHERD 415 (638)
Q Consensus 411 NHD~~ 415 (638)
|||..
T Consensus 64 NHe~~ 68 (225)
T cd00144 64 NHEDM 68 (225)
T ss_pred Cchhh
Confidence 99974
No 106
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.046 Score=60.07 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=53.9
Q ss_pred ccEEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-----CCCccEEEEeCCcccCCC-------------cHHH
Q 046241 327 EVLRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-----NGSVDSIFHIGDISYATG-------------FLVE 388 (638)
Q Consensus 327 ~~~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-----~~~pDfvl~~GDi~y~~g-------------~~~~ 388 (638)
+.+++++++|.|.+...- -...+..+++.+. +.+...++.+||.++.-| ...|
T Consensus 224 e~v~v~~isDih~GSk~F---------~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~q 294 (481)
T COG1311 224 ERVYVALISDIHRGSKEF---------LEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQ 294 (481)
T ss_pred cceEEEEEeeeecccHHH---------HHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHH
Confidence 349999999999864210 1223333444332 234578999999996432 1246
Q ss_pred HHHHHHhhhhhccCcceEEecCCCccC
Q 046241 389 WDFFLHQISPVASRVSYMTAIGNHERD 415 (638)
Q Consensus 389 wd~f~~~l~~l~~~vP~~~v~GNHD~~ 415 (638)
++++.+.+..+...+-+++.|||||..
T Consensus 295 y~~~A~~L~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 295 YEELAEFLDQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred HHHHHHHHhhCCCCceEEEecCCCCcc
Confidence 777777777777788899999999973
No 107
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.51 E-value=0.0066 Score=62.66 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=43.4
Q ss_pred EEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhC-CCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecC
Q 046241 332 LTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDN-GSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIG 410 (638)
Q Consensus 332 ~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~-~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~G 410 (638)
.++||+|. ....++++++.+.. .+.|.++++||+++. |..+ .+..+.+..+. ..+..+.|
T Consensus 2 yvIGDIHG--------------~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR-Gp~s--~evl~~l~~l~--~~v~~VlG 62 (257)
T cd07422 2 YAIGDIQG--------------CYDELQRLLEKINFDPAKDRLWLVGDLVNR-GPDS--LETLRFVKSLG--DSAKTVLG 62 (257)
T ss_pred EEEECCCC--------------CHHHHHHHHHhcCCCCCCCEEEEecCcCCC-CcCH--HHHHHHHHhcC--CCeEEEcC
Confidence 58999995 34667777777653 468999999999964 4322 12333333332 36789999
Q ss_pred CCcc
Q 046241 411 NHER 414 (638)
Q Consensus 411 NHD~ 414 (638)
|||.
T Consensus 63 NHD~ 66 (257)
T cd07422 63 NHDL 66 (257)
T ss_pred CchH
Confidence 9996
No 108
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.26 E-value=0.01 Score=61.71 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=43.8
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-CCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-NGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
+..++||+|. ....++++++++. +...|-++++||+++.+....+ ..+.+..+. ..+..+
T Consensus 2 ~~YvIGDIHG--------------c~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~sle---vL~~l~~l~--~~~~~V 62 (279)
T TIGR00668 2 ATYLIGDLHG--------------CYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLE---VLRYVKSLG--DAVRLV 62 (279)
T ss_pred cEEEEEcccC--------------CHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHH---HHHHHHhcC--CCeEEE
Confidence 4689999995 3566788888875 3467999999999965433222 222222221 235689
Q ss_pred cCCCcc
Q 046241 409 IGNHER 414 (638)
Q Consensus 409 ~GNHD~ 414 (638)
.||||.
T Consensus 63 lGNHD~ 68 (279)
T TIGR00668 63 LGNHDL 68 (279)
T ss_pred EChhHH
Confidence 999996
No 109
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.18 E-value=0.039 Score=51.76 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=42.7
Q ss_pred EEEEEEecCCCCCCCC-CcccccCCC--hHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcce
Q 046241 329 LRFLTYGDMGKAPLDD-SAEHYIQPG--SLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~-~~~~~~~pg--~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~ 405 (638)
..+.++||+|.+...- +...+..+. ....+....+.+ ..-|.+.|+||++....... .+...++.+...+
T Consensus 4 ~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv--~p~D~lwhLGDl~~~~n~~~---~a~~IlerLnGrk-- 76 (186)
T COG4186 4 TMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTV--GPDDVLWHLGDLSSGANRER---AAGLILERLNGRK-- 76 (186)
T ss_pred eEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcC--CccceEEEecccccccchhh---HHHHHHHHcCCcE--
Confidence 3467889999865321 111111111 122223333333 34578999999996543322 2334555554444
Q ss_pred EEecCCCcc
Q 046241 406 MTAIGNHER 414 (638)
Q Consensus 406 ~~v~GNHD~ 414 (638)
..++||||-
T Consensus 77 hlv~GNhDk 85 (186)
T COG4186 77 HLVPGNHDK 85 (186)
T ss_pred EEeeCCCCC
Confidence 889999996
No 110
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.11 E-value=0.01 Score=59.82 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=54.0
Q ss_pred EEEEEEecCCCCCCCCCcc--cccCCCh-HHHHHHHHHHhhCCCccEEEEeCCcccCCCc--HHHHHHHHHhhhhhccCc
Q 046241 329 LRFLTYGDMGKAPLDDSAE--HYIQPGS-LSVIKAMADEVDNGSVDSIFHIGDISYATGF--LVEWDFFLHQISPVASRV 403 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~--~~~~pg~-~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~--~~~wd~f~~~l~~l~~~v 403 (638)
-+.++++|+|.+-...-.+ .+..+-+ ..+.+.+.+.++..+|+-++.+||+-.+-+. ..+|+.....++.+...
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~- 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER- 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC-
Confidence 4689999999875322111 1222212 3444555556778999999999999876543 34555444444433322
Q ss_pred ceEEecCCCccC
Q 046241 404 SYMTAIGNHERD 415 (638)
Q Consensus 404 P~~~v~GNHD~~ 415 (638)
-+..+.||||-+
T Consensus 99 evi~i~GNHD~~ 110 (235)
T COG1407 99 EVIIIRGNHDNG 110 (235)
T ss_pred cEEEEeccCCCc
Confidence 599999999964
No 111
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.02 E-value=0.11 Score=52.80 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=36.5
Q ss_pred HHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEccccccce
Q 046241 481 MKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYER 542 (638)
Q Consensus 481 L~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeR 542 (638)
+++.++++. .+...+||+.|-..-.... .... .+.+..-+.+.++|+++.||.|..+.
T Consensus 162 i~~~i~~lr-~~~D~vIv~~H~G~e~~~~--p~~~-~~~~A~~l~~~G~DvIiG~H~H~~~~ 219 (239)
T smart00854 162 ILADIARAR-KKADVVIVSLHWGVEYQYE--PTDE-QRELAHALIDAGADVVIGHHPHVLQP 219 (239)
T ss_pred HHHHHHHHh-ccCCEEEEEecCccccCCC--CCHH-HHHHHHHHHHcCCCEEEcCCCCcCCc
Confidence 444444443 3578999999977632211 1222 23444445557899999999998874
No 112
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.90 E-value=0.28 Score=50.04 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcH---HHHHHHHHhhhhhccCcceEEecCCCccCCCCCCCCcccCCCC
Q 046241 353 GSLSVIKAMADEVDNGSVDSIFHIGDISYATGFL---VEWDFFLHQISPVASRVSYMTAIGNHERDYLGSSGSVYESPDS 429 (638)
Q Consensus 353 g~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~---~~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~~sgs~y~~~ds 429 (638)
|-..+.+.|-+..++.++||||..|.++ +.|.. ...+++++. .+- ..+.|||=++... .+..-+.
T Consensus 11 Gr~~v~~~Lp~L~~~~~~DfVIaNgENa-a~G~Git~~~~~~L~~~------GvD-viT~GNH~wdkke----i~~~i~~ 78 (253)
T PF13277_consen 11 GRRAVKEHLPELKEEYGIDFVIANGENA-AGGFGITPKIAEELFKA------GVD-VITMGNHIWDKKE----IFDFIDK 78 (253)
T ss_dssp HHHHHHHHHHHHGG--G-SEEEEE-TTT-TTTSS--HHHHHHHHHH------T-S-EEE--TTTTSSTT----HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCccc-CCCCCCCHHHHHHHHhc------CCC-EEecCcccccCcH----HHHHHhc
Confidence 3333444444444568999999999999 55543 333333332 333 4578999875322 1000000
Q ss_pred CCccchhccccccCCCCCCCCCeEEEEECCEEEEEEeCC--CCCCCcHHHHHHHHHHhccccCCCCCeEEEEeccCCccC
Q 046241 430 GGECGVAYETYFPMPIPARDKPWYSIEQAGVHFTVMSTE--HDWSENSEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSS 507 (638)
Q Consensus 430 ~ge~~~~y~~~f~~P~~~~~~~yYsfd~G~v~fi~LDT~--~~~~~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss 507 (638)
.....+-.++|...++.-|..++.++.++.+++-. ........-+..+++.|++. +.+.+.+||=+|.=.-
T Consensus 79 ----~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVDFHAEaT-- 151 (253)
T PF13277_consen 79 ----EPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVDFHAEAT-- 151 (253)
T ss_dssp -----SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEEE-S-H--
T ss_pred ----CCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEEeecCcH--
Confidence 00011113445555577899999999888777753 22222223344455555543 2577889998994321
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 508 LSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 508 ~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
--+.-.-.+-.-+|.+|+-=|+|..-
T Consensus 152 --------SEK~A~g~~lDGrvsaV~GTHTHVqT 177 (253)
T PF13277_consen 152 --------SEKQAMGWYLDGRVSAVVGTHTHVQT 177 (253)
T ss_dssp --------HHHHHHHHHHBTTBSEEEEESSSS-B
T ss_pred --------HHHHHHHHHhCCcEEEEEeCCCCccC
Confidence 11223345567799999999999854
No 113
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.67 E-value=0.02 Score=58.44 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=93.8
Q ss_pred ccEEEEeCCcccCCCcH-------HHHHHHHH----hhhhhccCcceEEecCCCccCCCCC--CCCcccCCCCCCccchh
Q 046241 370 VDSIFHIGDISYATGFL-------VEWDFFLH----QISPVASRVSYMTAIGNHERDYLGS--SGSVYESPDSGGECGVA 436 (638)
Q Consensus 370 pDfvl~~GDi~y~~g~~-------~~wd~f~~----~l~~l~~~vP~~~v~GNHD~~~~~~--sgs~y~~~ds~ge~~~~ 436 (638)
|=-++..||++++.+-. .++.+|.. ...++...+|+|+-.||||.+-++. +-.+|+. | ...
T Consensus 127 plGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRr-----E-lrd 200 (392)
T COG5555 127 PLGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRR-----E-LRD 200 (392)
T ss_pred ceeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHH-----H-HHH
Confidence 33467788999765421 12222221 2234445699999999999864331 1112210 0 111
Q ss_pred cccc-------ccC--CCC--CCCCCeEEEEECCEEEEEEeCCCCCC--CcHHHHHHHHHHhccccCCCCCeEEEEeccC
Q 046241 437 YETY-------FPM--PIP--ARDKPWYSIEQAGVHFTVMSTEHDWS--ENSEQYEWMKKDMASVDRSKTPWLIFSGHRP 503 (638)
Q Consensus 437 y~~~-------f~~--P~~--~~~~~yYsfd~G~v~fi~LDT~~~~~--~~~~Q~~WL~~~La~~~r~~~~w~IV~~H~P 503 (638)
|... |.. |.. ...+.-||+++|++|.+-+-+...-. -...-+-||+.+|........| ++++.|..
T Consensus 201 yve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyG 279 (392)
T COG5555 201 YVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYG 279 (392)
T ss_pred HHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccCCCc-eeehhhhC
Confidence 1111 111 111 12345689999999888776532110 1123357999999875433444 78888886
Q ss_pred Cc--cCCCC----------------CCCHHHHHHHHHHHHhCCCeEEEEccccccc
Q 046241 504 MY--SSLSS----------------SVDNKFVDAVEPLLLDNKVDLALFGHVHNYE 541 (638)
Q Consensus 504 ~y--ss~~~----------------~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~Ye 541 (638)
.- ++..+ .....-+..|...++-|+|...+.||.|...
T Consensus 280 wdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~ 335 (392)
T COG5555 280 WDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFN 335 (392)
T ss_pred ccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccc
Confidence 53 22211 1112236788888999999999999999864
No 114
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=95.16 E-value=0.34 Score=49.72 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred HHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcccccccee
Q 046241 477 QYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDLALFGHVHNYERT 543 (638)
Q Consensus 477 Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~VdlvlsGH~H~YeRt 543 (638)
+.+.+.+++++++ ++..++||+.|.-.-.. ....+. .+.+...+.+.++|+|+.+|-|..+-.
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~--~~p~~~-q~~~a~~lidaGaDiIiG~HpHv~q~~ 231 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYE--NYPTPE-QRELARALIDAGADIIIGHHPHVIQPV 231 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCC--CCCCHH-HHHHHHHHHHcCCCEEEeCCCCcccce
Confidence 4577888888775 67889999999753211 112333 344555555689999999999998754
No 115
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.06 E-value=0.089 Score=58.28 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=41.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCC
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYAT 383 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~ 383 (638)
+||++..|.|.+..... ......+..+++.|+..++..+.|+||..||+..++
T Consensus 14 irILVaTD~HlGY~EkD--~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeN 66 (646)
T KOG2310|consen 14 IRILVATDNHLGYGEKD--AVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHEN 66 (646)
T ss_pred eEEEEeecCccccccCC--cccccchHHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 99999999998754321 112234678889999988899999999999999775
No 116
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=94.81 E-value=0.093 Score=54.68 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=43.7
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHH-HHHHHHhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVE-WDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~-wd~f~~~l~~l~~~vP~~~ 407 (638)
-+++++||+|.. ...+.++.+.......+-++++||+++.+....+ ....+ .++ +...-.++.
T Consensus 28 ~~i~vvGDiHG~--------------~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~-~lk-~~~p~~v~l 91 (271)
T smart00156 28 APVTVCGDIHGQ--------------FDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLF-ALK-ILYPNRVVL 91 (271)
T ss_pred CCEEEEEeCcCC--------------HHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHH-HHH-hcCCCCEEE
Confidence 358999999943 4455666665555667889999999964432221 11111 111 112335789
Q ss_pred ecCCCccC
Q 046241 408 AIGNHERD 415 (638)
Q Consensus 408 v~GNHD~~ 415 (638)
+.||||..
T Consensus 92 lrGNHE~~ 99 (271)
T smart00156 92 LRGNHESR 99 (271)
T ss_pred EeccccHH
Confidence 99999974
No 117
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=94.75 E-value=0.28 Score=40.34 Aligned_cols=70 Identities=26% Similarity=0.419 Sum_probs=42.6
Q ss_pred CCceEEEeecCCCCCceEEEEEeCCC-C----CcEEEEcCCCCccceeeEeecCCcccccccCCCCCCcCccCCceEEEE
Q 046241 215 SPLYGHLSSSDSTATSMRVTWVSGDK-E----PQQVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDPGYIHTA 289 (638)
Q Consensus 215 ~P~~~~ls~~~~~~~sm~V~W~t~~~-~----~~~V~yg~~~~~~~~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~~h~a 289 (638)
+|..+++... ..+++.|+|..... . .-.|+|....... ....... + +-.+.+
T Consensus 2 ~P~~l~v~~~--~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~-~~~~~~~-----------~---------~~~~~~ 58 (85)
T PF00041_consen 2 APENLSVSNI--SPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTS-DWQEVTV-----------P---------GNETSY 58 (85)
T ss_dssp SSEEEEEEEE--CSSEEEEEEEESSSTSSSESEEEEEEEETTSSS-EEEEEEE-----------E---------TTSSEE
T ss_pred cCcCeEEEEC--CCCEEEEEEECCCCCCCCeeEEEEEEEecccce-eeeeeee-----------e---------eeeeee
Confidence 4666676665 36899999998842 1 2367775433221 0111100 1 111367
Q ss_pred EEcCCCCCcEEEEEEeeC
Q 046241 290 VMTGLRPSATFSYRYGSD 307 (638)
Q Consensus 290 ~l~gL~P~T~Y~Yrvg~~ 307 (638)
.++||+|+|+|.++|..-
T Consensus 59 ~i~~L~p~t~Y~~~v~a~ 76 (85)
T PF00041_consen 59 TITGLQPGTTYEFRVRAV 76 (85)
T ss_dssp EEESCCTTSEEEEEEEEE
T ss_pred eeccCCCCCEEEEEEEEE
Confidence 899999999999999853
No 118
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=94.23 E-value=0.15 Score=54.00 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhc--cCcceEE
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVA--SRVSYMT 407 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~--~~vP~~~ 407 (638)
+++++||+|.. ...+.++.+.......+-++++||+++.+....+ .+..+..+. ...-++.
T Consensus 44 ~i~ViGDIHG~--------------~~dL~~l~~~~g~~~~~~ylFLGDyVDRG~~s~E---vi~lL~~lki~~p~~v~l 106 (305)
T cd07416 44 PVTVCGDIHGQ--------------FYDLLKLFEVGGSPANTRYLFLGDYVDRGYFSIE---CVLYLWALKILYPKTLFL 106 (305)
T ss_pred CEEEEEeCCCC--------------HHHHHHHHHhcCCCCCceEEEECCccCCCCChHH---HHHHHHHHHhhcCCCEEE
Confidence 58899999953 3445556665544456889999999964322211 111121221 1235788
Q ss_pred ecCCCccC
Q 046241 408 AIGNHERD 415 (638)
Q Consensus 408 v~GNHD~~ 415 (638)
+.||||..
T Consensus 107 LRGNHE~~ 114 (305)
T cd07416 107 LRGNHECR 114 (305)
T ss_pred EeCCCcHH
Confidence 99999973
No 119
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=94.18 E-value=0.51 Score=54.94 Aligned_cols=122 Identities=22% Similarity=0.382 Sum_probs=69.1
Q ss_pred EEEEeeeccc--eEEEEEec-CCC----cceeeccccccccCCCCCCce-EEEeecCCCCCceEEEEEeCCCCC-----c
Q 046241 177 KFHVINIRTD--IEFVFFAG-GFD----TPCILNRTNPINFANPKSPLY-GHLSSSDSTATSMRVTWVSGDKEP-----Q 243 (638)
Q Consensus 177 ~~~l~n~r~~--~~f~~f~~-~~~----~~~~~~~s~~~~f~~~~~P~~-~~ls~~~~~~~sm~V~W~t~~~~~-----~ 243 (638)
++.+-++|+. |.|-++.- |.+ .|...+ +-.|+- |-.+|.. .++-+.....++++++|.-.+... -
T Consensus 399 ~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a-~vnItt-~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildY 476 (996)
T KOG0196|consen 399 SVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFA-SVNITT-NQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDY 476 (996)
T ss_pred eEEEeccccccccEEEEEEeecccccCCCCCcce-eEEeec-cccCCCccceEEEeeeccCceEEecCCCCCCCCcceeE
Confidence 4456666654 78887762 322 121111 111221 2233333 344444556789999999776543 2
Q ss_pred EEEEcCCCCccceeeEeecCCcccccccCCCCCCcCccCCceEEEEEEcCCCCCcEEEEEEeeCC----CCcceeeEEEC
Q 046241 244 QVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSDL----VGWSDKIQFKT 319 (638)
Q Consensus 244 ~V~yg~~~~~~~~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~~h~a~l~gL~P~T~Y~Yrvg~~~----~~~S~~~sF~T 319 (638)
.|+|-++.... .+|.. +.+ -..+|+++||+|||.|.+||.... +..|....|.|
T Consensus 477 Evky~ek~~~e---~~~~~--------~~t-----------~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT 534 (996)
T KOG0196|consen 477 EVKYYEKDEDE---RSYST--------LKT-----------KTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQT 534 (996)
T ss_pred EEEEeeccccc---cceeE--------Eec-----------ccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeee
Confidence 56665432211 11111 001 123789999999999999998632 24688999999
Q ss_pred CCC
Q 046241 320 PPA 322 (638)
Q Consensus 320 ~p~ 322 (638)
.+.
T Consensus 535 ~~~ 537 (996)
T KOG0196|consen 535 LPS 537 (996)
T ss_pred cCc
Confidence 875
No 120
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=94.13 E-value=0.13 Score=54.71 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCC-CccEEEEeCCcccCCCcHHH-HHHHHHhhhhhccCcceEE
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNG-SVDSIFHIGDISYATGFLVE-WDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~-~pDfvl~~GDi~y~~g~~~~-wd~f~~~l~~l~~~vP~~~ 407 (638)
+++++||+|.. ...+.++.+..... .-+-++++||+++.+...-+ ....+. ++ +...--++.
T Consensus 52 ~~~vvGDiHG~--------------~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~-lk-~~~p~~v~l 115 (321)
T cd07420 52 QVTICGDLHGK--------------LDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFA-FF-LVYPNEVHL 115 (321)
T ss_pred CeEEEEeCCCC--------------HHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHH-Hh-hcCCCcEEE
Confidence 68999999953 44555665544322 23679999999965432221 111111 11 111234788
Q ss_pred ecCCCccC
Q 046241 408 AIGNHERD 415 (638)
Q Consensus 408 v~GNHD~~ 415 (638)
+.||||..
T Consensus 116 lRGNHE~~ 123 (321)
T cd07420 116 NRGNHEDH 123 (321)
T ss_pred ecCchhhh
Confidence 99999974
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=94.08 E-value=0.14 Score=53.65 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=41.7
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhh--ccCcceEE
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPV--ASRVSYMT 407 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l--~~~vP~~~ 407 (638)
.++++||+|.. ...+.++.+.......+-++++||+++. |.... +....+..+ .....++.
T Consensus 43 ~i~vvGDIHG~--------------~~dL~~ll~~~~~~~~~~~lfLGDyVDR-G~~s~--evl~ll~~lk~~~p~~v~l 105 (285)
T cd07415 43 PVTVCGDIHGQ--------------FYDLLELFRVGGDPPDTNYLFLGDYVDR-GYYSV--ETFLLLLALKVRYPDRITL 105 (285)
T ss_pred CEEEEEeCCCC--------------HHHHHHHHHHcCCCCCCeEEEEeEECCC-CcCHH--HHHHHHHHHhhcCCCcEEE
Confidence 38899999943 3445555555444455778999999965 43221 111111111 12345899
Q ss_pred ecCCCccC
Q 046241 408 AIGNHERD 415 (638)
Q Consensus 408 v~GNHD~~ 415 (638)
+.||||..
T Consensus 106 lrGNHE~~ 113 (285)
T cd07415 106 LRGNHESR 113 (285)
T ss_pred EecccchH
Confidence 99999973
No 122
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.48 Score=44.22 Aligned_cols=85 Identities=18% Similarity=0.088 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCeEEEEccccccceecccccCccccCCccCCCCCccccCCCCCCCEEEEECCCCCccCCCCCCCCCCcce
Q 046241 519 AVEPLLLDNKVDLALFGHVHNYERTCSVYKQSCLAMPTKDANGIDTYDHSNYSAPVQAVIGMAGFTLDKFPDNADHTWSL 598 (638)
Q Consensus 519 ~l~~Ll~k~~VdlvlsGH~H~YeRt~p~~~~~~~~~~~~d~~G~~~y~~~~~~gpv~iv~G~aG~~~~~~~~~~~~~ws~ 598 (638)
.|.-|-++.+||+.++||+|..+.... +|-.+|--|++-...... .
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye~-------------------------eg~ffvnPGSaTGAfn~~---------~ 143 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYEH-------------------------EGKFFVNPGSATGAFNVS---------D 143 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEEe-------------------------CCcEEeCCCcccCCCccc---------c
Confidence 455566778999999999999886421 233455556552211100 0
Q ss_pred eeeccccEEEEEEeCCEEEEEEEEcCCCcE-EEEEEEEec
Q 046241 599 IRISKFGYLRGNANKEEMKFEFVNSDTREV-EDSFRIIKA 637 (638)
Q Consensus 599 ~~~~~~Gy~~v~v~~~~L~~~~~~~~dG~v-~D~f~I~k~ 637 (638)
.......|+.+.+.+..+....|.--+|+| +|..+..|+
T Consensus 144 t~~~~PSFvLmDiqg~~~v~YvY~lidgeVkVdki~ykK~ 183 (183)
T KOG3325|consen 144 TDIIVPSFVLMDIQGSTVVTYVYRLIDGEVKVDKIEYKKP 183 (183)
T ss_pred cCCCCCceEEEEecCCEEEEEEeeeeCCcEEEEEEEecCC
Confidence 011345799999999988887777778887 677766553
No 123
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=93.70 E-value=0.14 Score=53.90 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=40.9
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhh--hhccCcceEEe
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQIS--PVASRVSYMTA 408 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~--~l~~~vP~~~v 408 (638)
+.++||+|.. ...+.++.+.+.....+-++++||+++. |.... +. ...+- .+.....++.+
T Consensus 54 ~~ViGDIHG~--------------~~~L~~l~~~~~~~~~~~~lfLGDyVDR-G~~s~-ev-l~ll~~lk~~~p~~v~ll 116 (294)
T PTZ00244 54 VRVCGDTHGQ--------------YYDLLRIFEKCGFPPYSNYLFLGDYVDR-GKHSV-ET-ITLQFCYKIVYPENFFLL 116 (294)
T ss_pred ceeeccCCCC--------------HHHHHHHHHHcCCCCcccEEEeeeEecC-CCCHH-HH-HHHHHHHhhccCCeEEEE
Confidence 6789999943 4455566665544455568899999965 43221 11 11111 12224468999
Q ss_pred cCCCccC
Q 046241 409 IGNHERD 415 (638)
Q Consensus 409 ~GNHD~~ 415 (638)
.||||..
T Consensus 117 rGNHE~~ 123 (294)
T PTZ00244 117 RGNHECA 123 (294)
T ss_pred ecccchH
Confidence 9999963
No 124
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=93.66 E-value=0.18 Score=53.06 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEec
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAI 409 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~ 409 (638)
.++++||+|.. ...+.++.+.......+-++++||+++.+....+-=.+...++ +.....++.+.
T Consensus 51 ~i~viGDIHG~--------------~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk-~~~p~~i~llr 115 (293)
T cd07414 51 PLKICGDIHGQ--------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYK-IKYPENFFLLR 115 (293)
T ss_pred ceEEEEecCCC--------------HHHHHHHHHhcCCCCcceEEEEeeEecCCCCcHHHHHHHHHhh-hhCCCcEEEEe
Confidence 48899999942 3445556665544556778999999965432222111111111 11123478899
Q ss_pred CCCccC
Q 046241 410 GNHERD 415 (638)
Q Consensus 410 GNHD~~ 415 (638)
||||..
T Consensus 116 GNHE~~ 121 (293)
T cd07414 116 GNHECA 121 (293)
T ss_pred cccchh
Confidence 999974
No 125
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=93.60 E-value=0.18 Score=54.71 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=41.2
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCc-cEEEEeCCcccCCCcHHHHHHHHHhhhhh--ccCcce
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSV-DSIFHIGDISYATGFLVEWDFFLHQISPV--ASRVSY 405 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~p-Dfvl~~GDi~y~~g~~~~wd~f~~~l~~l--~~~vP~ 405 (638)
-++.++||+|.. ...+..+.+.+.-... +.++++||+++. |.... + .+..+..+ ...--+
T Consensus 66 ~~i~VvGDIHG~--------------~~dL~~ll~~~g~~~~~~~ylFLGDyVDR-Gp~Sl-E-vl~lL~~lki~~p~~v 128 (377)
T cd07418 66 CEVVVVGDVHGQ--------------LHDVLFLLEDAGFPDQNRFYVFNGDYVDR-GAWGL-E-TFLLLLSWKVLLPDRV 128 (377)
T ss_pred CCEEEEEecCCC--------------HHHHHHHHHHhCCCCCCceEEEeccccCC-CCChH-H-HHHHHHHHhhccCCeE
Confidence 358999999953 4455566655432223 458999999964 43221 1 11111111 123357
Q ss_pred EEecCCCccC
Q 046241 406 MTAIGNHERD 415 (638)
Q Consensus 406 ~~v~GNHD~~ 415 (638)
+.+.||||..
T Consensus 129 ~lLRGNHE~~ 138 (377)
T cd07418 129 YLLRGNHESK 138 (377)
T ss_pred EEEeeecccc
Confidence 8999999974
No 126
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=93.43 E-value=0.22 Score=52.69 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=41.1
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhh--ccCcceEE
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPV--ASRVSYMT 407 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l--~~~vP~~~ 407 (638)
.++++||+|.. ...+.++.+.+.....+-++++||+++. |.... + ....+-.+ ....-++.
T Consensus 44 ~i~vvGDIHG~--------------~~~L~~l~~~~~~~~~~~~lfLGDyVDR-G~~s~-e-vl~ll~~lk~~~p~~v~l 106 (303)
T PTZ00239 44 PVNVCGDIHGQ--------------FYDLQALFKEGGDIPNANYIFIGDFVDR-GYNSV-E-TMEYLLCLKVKYPGNITL 106 (303)
T ss_pred CEEEEEeCCCC--------------HHHHHHHHHhcCCCCCceEEEeeeEcCC-CCCHH-H-HHHHHHHhhhcCCCcEEE
Confidence 37889999943 3445556555444455678999999965 43221 1 11111111 11234789
Q ss_pred ecCCCccC
Q 046241 408 AIGNHERD 415 (638)
Q Consensus 408 v~GNHD~~ 415 (638)
+.||||..
T Consensus 107 lrGNHE~~ 114 (303)
T PTZ00239 107 LRGNHESR 114 (303)
T ss_pred EecccchH
Confidence 99999963
No 127
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=93.30 E-value=2 Score=44.28 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=43.2
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEe
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTA 408 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v 408 (638)
.||+.++|.|.-..+ +. ++ ..-|+++|+||... .|...+-..|.+.+..+.-.. =+++
T Consensus 62 ~r~VcisdtH~~~~~-----------------i~-~~--p~gDvlihagdfT~-~g~~~ev~~fn~~~gslph~y-KIVI 119 (305)
T KOG3947|consen 62 ARFVCISDTHELTFD-----------------IN-DI--PDGDVLIHAGDFTN-LGLPEEVIKFNEWLGSLPHEY-KIVI 119 (305)
T ss_pred eEEEEecCcccccCc-----------------cc-cC--CCCceEEeccCCcc-ccCHHHHHhhhHHhccCccee-eEEE
Confidence 999999999964322 11 12 56789999999994 455555455555444332111 2678
Q ss_pred cCCCccCCC
Q 046241 409 IGNHERDYL 417 (638)
Q Consensus 409 ~GNHD~~~~ 417 (638)
.||||....
T Consensus 120 aGNHELtFd 128 (305)
T KOG3947|consen 120 AGNHELTFD 128 (305)
T ss_pred eeccceeec
Confidence 999998544
No 128
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=93.18 E-value=0.21 Score=53.11 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhh--ccCcceEE
Q 046241 330 RFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPV--ASRVSYMT 407 (638)
Q Consensus 330 rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l--~~~vP~~~ 407 (638)
+++++||+|.. ...+.++.+.......+-++++||+++. |.... +. +..+..+ ...-.++.
T Consensus 60 ~i~vvGDIHG~--------------~~dL~~l~~~~g~~~~~~ylfLGDyVDR-G~~s~-ev-l~ll~~lki~~p~~v~l 122 (320)
T PTZ00480 60 PLKICGDVHGQ--------------YFDLLRLFEYGGYPPESNYLFLGDYVDR-GKQSL-ET-ICLLLAYKIKYPENFFL 122 (320)
T ss_pred CeEEEeecccC--------------HHHHHHHHHhcCCCCcceEEEeceecCC-CCCcH-HH-HHHHHHhcccCCCceEE
Confidence 48899999943 3445555555444455678899999964 43211 11 1111111 12235789
Q ss_pred ecCCCccC
Q 046241 408 AIGNHERD 415 (638)
Q Consensus 408 v~GNHD~~ 415 (638)
+.||||..
T Consensus 123 lRGNHE~~ 130 (320)
T PTZ00480 123 LRGNHECA 130 (320)
T ss_pred Eecccchh
Confidence 99999974
No 129
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=92.87 E-value=0.48 Score=53.43 Aligned_cols=58 Identities=19% Similarity=0.341 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhC-CCeE-EEEccccccc
Q 046241 475 SEQYEWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDN-KVDL-ALFGHVHNYE 541 (638)
Q Consensus 475 ~~Q~~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~-~Vdl-vlsGH~H~Ye 541 (638)
-.|.+|-.+.++. .+..-+|+++|.|.-. +.+..-.+..+...+ ++++ ||-||.|...
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~------~~e~~~~~~~ir~~~p~t~IqviGGHshird 270 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRD------DDEWKSLHAEIRKVHPNTPIQVIGGHSHIRD 270 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEeccccccc------chhhhhHHHHHhhhCCCCceEEECchhhhhh
Confidence 4567888887775 5677789999998632 111111333344444 7888 9999999843
No 130
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=92.00 E-value=0.39 Score=51.18 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCeEEEEccccc
Q 046241 517 VDAVEPLLLDNKVDLALFGHVHN 539 (638)
Q Consensus 517 r~~l~~Ll~k~~VdlvlsGH~H~ 539 (638)
.+.+...+++.+.++++=||.-.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 56778899999999999999854
No 131
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=91.52 E-value=0.35 Score=47.98 Aligned_cols=76 Identities=8% Similarity=0.077 Sum_probs=45.9
Q ss_pred EEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-CCCccEEEEeCCcccCCCcHH---------HH-H----HHHHh
Q 046241 331 FLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-NGSVDSIFHIGDISYATGFLV---------EW-D----FFLHQ 395 (638)
Q Consensus 331 f~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-~~~pDfvl~~GDi~y~~g~~~---------~w-d----~f~~~ 395 (638)
|++++|.+..... ...+.++.+++.+. +.+|+.+|++|+++....... .. . .+.+.
T Consensus 1 Iv~~Sg~~~~~~~---------~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (209)
T PF04042_consen 1 IVFASGPFLDSDN---------LSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSF 71 (209)
T ss_dssp EEEEES--CTTT----------HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHH
T ss_pred CEEEecCccCCCH---------hHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHH
Confidence 5788898876322 13556666666666 788999999999997543221 11 1 12233
Q ss_pred hhhhccCcceEEecCCCccC
Q 046241 396 ISPVASRVSYMTAIGNHERD 415 (638)
Q Consensus 396 l~~l~~~vP~~~v~GNHD~~ 415 (638)
++.+...++++.+||+||..
T Consensus 72 ~~~i~~~~~vvlvPg~~D~~ 91 (209)
T PF04042_consen 72 LESILPSTQVVLVPGPNDPT 91 (209)
T ss_dssp HCCCHCCSEEEEE--TTCTT
T ss_pred HhhcccccEEEEeCCCcccc
Confidence 44555688999999999973
No 132
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=90.76 E-value=0.82 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCeEEEEccc
Q 046241 517 VDAVEPLLLDNKVDLALFGHV 537 (638)
Q Consensus 517 r~~l~~Ll~k~~VdlvlsGH~ 537 (638)
.+.++..+++++.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 567888999999999999997
No 133
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=80.23 E-value=12 Score=29.77 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCcEEEEEEee
Q 046241 287 HTAVMTGLRPSATFSYRYGS 306 (638)
Q Consensus 287 h~a~l~gL~P~T~Y~Yrvg~ 306 (638)
..+.+.+|.|+++|.++|..
T Consensus 57 ~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 57 TSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred cEEEEccccCCCEEEEEEEE
Confidence 56788999999999999965
No 134
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=79.93 E-value=23 Score=37.36 Aligned_cols=94 Identities=16% Similarity=0.296 Sum_probs=47.8
Q ss_pred CCCCCceEEEeecC--CCCCceEEEEEeCCCCC-cEEEEcC-CCCccceeeEeecCCcccccccCCCCCCc---C---cc
Q 046241 212 NPKSPLYGHLSSSD--STATSMRVTWVSGDKEP-QQVQYGD-GKSETSKVTTFTQDDMCNATALQSPAKDF---G---WH 281 (638)
Q Consensus 212 ~~~~P~~~~ls~~~--~~~~sm~V~W~t~~~~~-~~V~yg~-~~~~~~~~~t~~~~~~c~~~~~~~pa~~~---g---~~ 281 (638)
=|.-|.-..+-..+ -+=++++|.|....... ...-|.. ..............+.|... .+.... . ++
T Consensus 171 ~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~~kYCvy~~~~~~~~~~~~~~~~~n~C~~~---~sr~k~e~v~Ck~~~ 247 (300)
T PF10179_consen 171 YPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRSIKYCVYRREEHSNYQERSVSRMPNQCLGP---ESRKKSEKVLCKYFH 247 (300)
T ss_pred CCCCCCCCceeEEcCCcccceEEEEEecCCCCCceEEEEEEEecCchhhhhhcccCccCCCC---CccccceEEEEEEEc
Confidence 35667666665443 23479999999654433 2222321 11111111222345566521 011111 1 11
Q ss_pred C-------CceEEEEEEcCCCCCcEEEEEEeeCC
Q 046241 282 D-------PGYIHTAVMTGLRPSATFSYRYGSDL 308 (638)
Q Consensus 282 ~-------~g~~h~a~l~gL~P~T~Y~Yrvg~~~ 308 (638)
. +.-+=..+|.||+||+.|-..|....
T Consensus 248 ~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~ 281 (300)
T PF10179_consen 248 SPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNG 281 (300)
T ss_pred CCccccccccccceeecccCCCCcEEEEEEEEec
Confidence 1 22333457999999999998887654
No 135
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=77.58 E-value=19 Score=43.99 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=42.7
Q ss_pred CCCCceEEEeecCCCCCceEEEEEeCC---C--CCcEEEEcCCCCccceeeEeecCCcccccccCCCCCCcCccCCceEE
Q 046241 213 PKSPLYGHLSSSDSTATSMRVTWVSGD---K--EPQQVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDPGYIH 287 (638)
Q Consensus 213 ~~~P~~~~ls~~~~~~~sm~V~W~t~~---~--~~~~V~yg~~~~~~~~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~~h 287 (638)
+.+|..+++-... .++|.|.|.... + ..-.|+|........ .|.. . +..+-.-
T Consensus 820 ~~ap~~~~~~~~s--~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~---------~~~~-~----------~i~~~~~ 877 (1051)
T KOG3513|consen 820 PVAPTKLSAKPLS--SSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEG---------SLSR-V----------QIAGNRT 877 (1051)
T ss_pred CCCCccceeeccc--CceEEEEecCcCccCCccceeEEEEEEcCCCcc---------cccc-e----------eecCCcc
Confidence 3456555555443 589999995332 1 245788875332211 1110 0 0012334
Q ss_pred EEEEcCCCCCcEEEEEEee
Q 046241 288 TAVMTGLRPSATFSYRYGS 306 (638)
Q Consensus 288 ~a~l~gL~P~T~Y~Yrvg~ 306 (638)
.+.|+||+|+|.|+..|..
T Consensus 878 ~~~ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 878 SWRLTGLEPNTKYRFYVRA 896 (1051)
T ss_pred eEeeeCCCCCceEEEEEEE
Confidence 6789999999999999975
No 136
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=74.03 E-value=18 Score=27.76 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCCcEEEEEEeeC
Q 046241 286 IHTAVMTGLRPSATFSYRYGSD 307 (638)
Q Consensus 286 ~h~a~l~gL~P~T~Y~Yrvg~~ 307 (638)
-+...+.+|+|++.|.++|..-
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEE
Confidence 3578899999999999999753
No 137
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=73.57 E-value=23 Score=40.32 Aligned_cols=102 Identities=16% Similarity=0.294 Sum_probs=61.0
Q ss_pred CCCCEEEEEEecCC--CCCCCCEEEEEcCCCCCccccccccccccccCCCCCCCccccccceeEEccCCccccccccccc
Q 046241 82 SDDEFVTVTVSGVL--LPAESDWVAMISPSDSNVETCLSAEAMYVQTGDVSSLPLLCHYPVKAKLMSNDRDYLSCKKKEC 159 (638)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 159 (638)
-.|.-|+..++=.+ .|+..||||||== ..... ..| .-|.|+....+|..-
T Consensus 17 ~P~~~v~C~Ytlt~~~~ps~~DWIGiFKV-Gw~s~------rdY----------------~Tf~Wa~~p~~~~~~----- 68 (546)
T PF07888_consen 17 IPGTDVECHYTLTPGFHPSSKDWIGIFKV-GWSST------RDY----------------YTFVWAPVPENYVEG----- 68 (546)
T ss_pred CCCCCeEEEEecCCCCCCCCCCeeEEeec-CCCch------hhe----------------eeEEeeccCccccCC-----
Confidence 34566777776544 6999999999952 22222 134 446666544444311
Q ss_pred cccCCCcceeeecceEEEEEEeeeccc----eEEEEEecCCCcceeeccccccccCCCCCCceEEEeecC
Q 046241 160 KKYSNGKCVVTTCSGSIKFHVINIRTD----IEFVFFAGGFDTPCILNRTNPINFANPKSPLYGHLSSSD 225 (638)
Q Consensus 160 ~~~~~~~~~~~~g~g~~~~~l~n~r~~----~~f~~f~~~~~~~~~~~~s~~~~f~~~~~P~~~~ls~~~ 225 (638)
.+....+.|+-.=+-.+ |.|.+.... -.+...|.+..|..|. |...-+++.+
T Consensus 69 ----------s~~~~~V~F~ayyLPk~~~e~YqfcYv~~~---g~V~G~S~pFqf~~~~-p~eeLvtle~ 124 (546)
T PF07888_consen 69 ----------SAVNCQVQFQAYYLPKDDDEFYQFCYVDQK---GEVRGASTPFQFRAPK-PLEELVTLED 124 (546)
T ss_pred ----------CccceEEEECcccCCCCCCCeEEEEEECCC---ccEEEecCCcccCCCC-ccccceeecc
Confidence 11224678874433333 888887632 3577888888888654 6665566654
No 138
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=72.68 E-value=9.9 Score=38.70 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=24.1
Q ss_pred EEEeCCcccCCCcHHHHHHHHHhh-hhhccCcceEEecCCCccC
Q 046241 373 IFHIGDISYATGFLVEWDFFLHQI-SPVASRVSYMTAIGNHERD 415 (638)
Q Consensus 373 vl~~GDi~y~~g~~~~wd~f~~~l-~~l~~~vP~~~v~GNHD~~ 415 (638)
-|++||+++ .|+.+. +.|+=++ -++.-.-.+..+.||||..
T Consensus 73 YLFLGDyVD-RG~~Sv-Et~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 73 YLFLGDYVD-RGYYSV-ETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred eEeecchhc-cccchH-HHHHHHHHHhhcCcceeEEeeccchhh
Confidence 678999995 454432 3333222 1222234578899999963
No 139
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=71.98 E-value=8.9 Score=46.99 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=63.7
Q ss_pred EEEEEEeeecc--ceEEEEEecCC-----Cc-ceeeccccccccC-CCCCCce-EEEeecCCCCCceEEEEEeCCCCC--
Q 046241 175 SIKFHVINIRT--DIEFVFFAGGF-----DT-PCILNRTNPINFA-NPKSPLY-GHLSSSDSTATSMRVTWVSGDKEP-- 242 (638)
Q Consensus 175 ~~~~~l~n~r~--~~~f~~f~~~~-----~~-~~~~~~s~~~~f~-~~~~P~~-~~ls~~~~~~~sm~V~W~t~~~~~-- 242 (638)
....+|-+++. +|.|.+..-+. .+ ...+. ++. -|-+|-+ +.|.... .++++|.|.......
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~-----Tlsd~PsaPP~Nl~lev~s--StsVrVsW~pP~~~t~n 645 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVR-----TLSDVPSAPPQNLSLEVVS--STSVRVSWLPPPSETQN 645 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEE-----eccCCCCCCCcceEEEecC--CCeEEEEccCCCccccc
Confidence 34555556664 47777765322 11 11111 111 2444444 7777765 589999999876532
Q ss_pred -c----EEEEcCCCCccceeeEeecCCcccccccCCCCCCcCccCCceEEEEEEcCCCCCcEEEEEEeeC----CCCcce
Q 046241 243 -Q----QVQYGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSD----LVGWSD 313 (638)
Q Consensus 243 -~----~V~yg~~~~~~~~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~~h~a~l~gL~P~T~Y~Yrvg~~----~~~~S~ 313 (638)
. .++|+..........++. .++. +.| .+.+|+|+|.|.+||... .+..|+
T Consensus 646 g~itgYkIRy~~~~~~~~~~~t~v------------~~n~-------~~~--l~~~Lep~T~Y~vrIsa~t~nGtGpaS~ 704 (1381)
T KOG4221|consen 646 GQITGYKIRYRKLSREDEVNETVV------------KGNT-------TQY--LFNGLEPNTQYRVRISAMTVNGTGPASE 704 (1381)
T ss_pred ceEEEEEEEecccCcccccceeec------------ccch-------hhh--HhhcCCCCceEEEEEEEeccCCCCCccc
Confidence 2 344442221111111111 1111 222 567899999999999652 224678
Q ss_pred eeEEECCC
Q 046241 314 KIQFKTPP 321 (638)
Q Consensus 314 ~~sF~T~p 321 (638)
+.+|.|+-
T Consensus 705 w~~aeT~~ 712 (1381)
T KOG4221|consen 705 WVSAETPE 712 (1381)
T ss_pred ceeccCcc
Confidence 88888863
No 140
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=63.56 E-value=1.2e+02 Score=37.92 Aligned_cols=122 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred eecceEEEEEEeeeccc--eEEEEEecCCCcceeecccccccc-CCCCCCceEEEeecCCCCCceEEEEEeCCCC-CcEE
Q 046241 170 TTCSGSIKFHVINIRTD--IEFVFFAGGFDTPCILNRTNPINF-ANPKSPLYGHLSSSDSTATSMRVTWVSGDKE-PQQV 245 (638)
Q Consensus 170 ~~g~g~~~~~l~n~r~~--~~f~~f~~~~~~~~~~~~s~~~~f-~~~~~P~~~~ls~~~~~~~sm~V~W~t~~~~-~~~V 245 (638)
.++.| +...+.|.--. |.|+.-+-+-. -.=..|.++.. ++|..|.+ .-+..- ...++.|+|....-. .++.
T Consensus 478 tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~--g~g~sS~pLkV~t~pEgp~~-~~a~at-s~~ti~v~WepP~~~n~~I~ 552 (1381)
T KOG4221|consen 478 TSSPG-IQVTVQNLSPLTMYFFRVRAKNEA--GSGESSAPLKVTTQPEGPVQ-LQAYAT-SPTTILVTWEPPPFGNGPIT 552 (1381)
T ss_pred ccCCc-eEEEeeecccceeEEEEEeccCcc--cCCccCCceEEecCCCCCcc-cccccc-CcceEEEEecCCCCCCCCce
Confidence 34555 66666665444 66666552211 00011112221 23445655 323333 368899999987632 2333
Q ss_pred E----EcCCCCccceeeEeecCCcccccccCCCCCCcCccCCceEEEEEEcCCCCCcEEEEEEeeCCC----CcceeeEE
Q 046241 246 Q----YGDGKSETSKVTTFTQDDMCNATALQSPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSDLV----GWSDKIQF 317 (638)
Q Consensus 246 ~----yg~~~~~~~~~~t~~~~~~c~~~~~~~pa~~~g~~~~g~~h~a~l~gL~P~T~Y~Yrvg~~~~----~~S~~~sF 317 (638)
. |..++. +.-..++ .--++.+|.||+|.|.|.|||...+. .-|..-+|
T Consensus 553 ~yk~~ys~~~~--~~~~~~~----------------------~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V 608 (1381)
T KOG4221|consen 553 GYKLFYSEDDT--GKELRVE----------------------NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITV 608 (1381)
T ss_pred EEEEEEEcCCC--CceEEEe----------------------cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEE
Confidence 3 332211 1101111 12357789999999999999986432 23567778
Q ss_pred ECC
Q 046241 318 KTP 320 (638)
Q Consensus 318 ~T~ 320 (638)
+|.
T Consensus 609 ~Tl 611 (1381)
T KOG4221|consen 609 RTL 611 (1381)
T ss_pred Eec
Confidence 876
No 141
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=63.19 E-value=35 Score=35.85 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=45.6
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-----CCCccEEEEeCCcccCC-----CcHHHHHHHHHhhh-
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-----NGSVDSIFHIGDISYAT-----GFLVEWDFFLHQIS- 397 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-----~~~pDfvl~~GDi~y~~-----g~~~~wd~f~~~l~- 397 (638)
.+|+++||.+... |...+.++.+.+..+ ..-|-.+++.|+++-.. +....+.+.++.+.
T Consensus 28 ~~~VilSDV~LD~----------p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~ 97 (291)
T PTZ00235 28 HNWIIMHDVYLDS----------PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSV 97 (291)
T ss_pred eEEEEEEeeccCC----------HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHH
Confidence 8999999999753 222333344444332 12388999999987442 11222333232222
Q ss_pred -------hhccCcceEEecCCCcc
Q 046241 398 -------PVASRVSYMTAIGNHER 414 (638)
Q Consensus 398 -------~l~~~vP~~~v~GNHD~ 414 (638)
.+..+.-++.+||-.|-
T Consensus 98 llls~fp~L~~~s~fVFVPGpnDP 121 (291)
T PTZ00235 98 MLISKFKLILEHCYLIFIPGINDP 121 (291)
T ss_pred HHHHhChHHHhcCeEEEECCCCCC
Confidence 34567789999999996
No 142
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=62.19 E-value=28 Score=41.34 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCceEEEeecCCCCCceEEEEEeCCCC------CcEEEEcCCCCccceeeEeecCCccccc---cc-CCCCCCcCccCCc
Q 046241 215 SPLYGHLSSSDSTATSMRVTWVSGDKE------PQQVQYGDGKSETSKVTTFTQDDMCNAT---AL-QSPAKDFGWHDPG 284 (638)
Q Consensus 215 ~P~~~~ls~~~~~~~sm~V~W~t~~~~------~~~V~yg~~~~~~~~~~t~~~~~~c~~~---~~-~~pa~~~g~~~~g 284 (638)
++.-.+++.+....+++.+.|..-.+. .-.+.|.+.+ ..+++.+...+.|+.. .+ ..|-.... ..+
T Consensus 488 e~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP--~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p--~~~ 563 (1025)
T KOG4258|consen 488 EDLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAP--FQNVTEEDGRDACGSNSWNVVDVDPPDLIP--NDG 563 (1025)
T ss_pred ccceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCC--ccccceecCccccccCcceEEeccCCcCCC--ccc
Confidence 355567777666789999999977653 2356666544 3455667777778721 10 01110000 012
Q ss_pred eEEEEEEcCCCCCcEEEEEEeeCC--------CCcceeeEEECCCCCCCCccEEEEEEecC
Q 046241 285 YIHTAVMTGLRPSATFSYRYGSDL--------VGWSDKIQFKTPPAGGSSEVLRFLTYGDM 337 (638)
Q Consensus 285 ~~h~a~l~gL~P~T~Y~Yrvg~~~--------~~~S~~~sF~T~p~~~~~~~~rf~v~GD~ 337 (638)
..--..|.||+|.|.|-|-|..-. .+.|++..|+|.|...+ -|+.++.-++.
T Consensus 564 ~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~sns 623 (1025)
T KOG4258|consen 564 THPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNS 623 (1025)
T ss_pred cccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCc
Confidence 222568999999999999987531 25789999999876533 34666666654
No 143
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=55.28 E-value=17 Score=39.12 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEEccccc
Q 046241 517 VDAVEPLLLDNKVDLALFGHVHN 539 (638)
Q Consensus 517 r~~l~~Ll~k~~VdlvlsGH~H~ 539 (638)
.+.+++++++.++|+++-||.=.
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqvv 255 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQVV 255 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCccc
Confidence 46778889999999999999643
No 144
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.61 E-value=36 Score=37.74 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=46.3
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhh-CCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVD-NGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMT 407 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~-~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~ 407 (638)
.|+++.||.... ..+.++++.+.-+ ....|++|.+|++...+....+|..+.+-...+ .+|.|+
T Consensus 6 ~kILv~Gd~~Gr-------------~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~v--PiptY~ 70 (528)
T KOG2476|consen 6 AKILVCGDVEGR-------------FDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKV--PIPTYF 70 (528)
T ss_pred ceEEEEcCcccc-------------HHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccC--ceeEEE
Confidence 699999996532 2344445443322 356999999999986555667777777655544 577777
Q ss_pred ecCCC
Q 046241 408 AIGNH 412 (638)
Q Consensus 408 v~GNH 412 (638)
.-+|-
T Consensus 71 ~g~~~ 75 (528)
T KOG2476|consen 71 LGDNA 75 (528)
T ss_pred ecCCC
Confidence 76665
No 145
>PF00960 Neocarzinostat: Neocarzinostatin family; InterPro: IPR002186 This family is comprised of antitumour antibiotic chromoproteins, as represented by neocarzinostatin []. These chromoproteins consist of a noncovalently bound, labile enediyne chromophore and its stabilising carrier apoprotein. The protein component of the chromophore displays an unusual bicyclic dienediyne structure. The chromoprotein inter-chelates the DNA, where its cycloaromatisation produces a biradical intermediate that has the ability to abstract hydrogens from the sugar moiety of DNA. This causes single- and double-strand breaks in the DNA []. In addition to their ability to cleave DNA at sites specific for each chromophore, results indicate that these chromoproteins also possess proteolytic activity against histones, with histone H1 as the preferred substrate []. Neocarzinostatin has 2 disulphide bridges and is kidney-shaped with 2 defined domains that hold a binding cavity. The larger domain forms a 7-stranded antiparallel beta-barrel and the smaller domain consists of 2 anti-parallel strands of beta sheet that are perpendicular to each other []. Other members of this family include macromycin, actinoxanthine, kedarcidin [], and C-1027 [].; GO: 0003677 DNA binding, 0006952 defense response; PDB: 2G0K_A 2CBT_A 2CBO_A 2CBQ_E 2CBM_A 1J5I_A 1NCO_A 1NOA_A 1J5H_A 1O5P_A ....
Probab=48.43 E-value=22 Score=31.68 Aligned_cols=23 Identities=48% Similarity=0.601 Sum_probs=21.6
Q ss_pred EEEecCCCCCCCCCEEEEEEecC
Q 046241 72 QINVSKSSDLSDDEFVTVTVSGV 94 (638)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~ 94 (638)
.|+|+|+.-|.||+.|+|+-+|.
T Consensus 1 ~~svsPstGLsdgqtVtVsgTGl 23 (110)
T PF00960_consen 1 AISVSPSTGLSDGQTVTVSGTGL 23 (110)
T ss_dssp EEEEESSSSBSTTEEEEEEEESS
T ss_pred CeeecCCCCCCCCCEEEEEeecc
Confidence 47899999999999999999996
No 146
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=43.61 E-value=14 Score=42.40 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecCCCccCCCC
Q 046241 356 SVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIGNHERDYLG 418 (638)
Q Consensus 356 ~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~ 418 (638)
..+.++...|++.-+|-+-++||+.+. |... |.. |+.+...--+=.-|||||.-|-+
T Consensus 171 ~fI~al~~lIqrL~VDhLHIvGDIyDR-Gp~p--d~I---mD~Lm~~hsvDIQWGNHDIlWMG 227 (640)
T PF06874_consen 171 EFIIALSELIQRLAVDHLHIVGDIYDR-GPRP--DKI---MDRLMNYHSVDIQWGNHDILWMG 227 (640)
T ss_pred HHHHHHHHHHHHHhhhheeecccccCC-CCCh--hHH---HHHHhcCCCccccccchHHHHHH
Confidence 445566666677789999999999854 4332 222 33333333455679999986654
No 147
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=42.12 E-value=32 Score=35.73 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=35.0
Q ss_pred HHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCe-EEEEccccc
Q 046241 479 EWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVD-LALFGHVHN 539 (638)
Q Consensus 479 ~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~Vd-lvlsGH~H~ 539 (638)
+.|+.+|+...+-..+ ++-.|.+ +.++-+.+.+|+++++.| ||++||+-.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~---------E~eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCK---------EKEMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEec---------chhchHHHHHHHHHhCCCEEEEeCchhh
Confidence 5799999876533333 3333433 345677899999999988 469999954
No 148
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=40.42 E-value=70 Score=33.03 Aligned_cols=69 Identities=20% Similarity=0.227 Sum_probs=34.8
Q ss_pred EEEEEEecCCCCCCCCCcccccCCChHHHHHHHHHHhhCCCccE-EEEeCCcccCCCcHH-HHHHHHHhhhhhccCcceE
Q 046241 329 LRFLTYGDMGKAPLDDSAEHYIQPGSLSVIKAMADEVDNGSVDS-IFHIGDISYATGFLV-EWDFFLHQISPVASRVSYM 406 (638)
Q Consensus 329 ~rf~v~GD~g~~~~~~~~~~~~~pg~~~~~~~l~~~i~~~~pDf-vl~~GDi~y~~g~~~-~wd~f~~~l~~l~~~vP~~ 406 (638)
--+.+.||.|... ...++.+ .+.-..||. .++.||.++. |+.+ +--.+.-.++ +.-.--+-
T Consensus 60 ~pvtvcGDvHGqf-------------~dl~ELf--kiGG~~pdtnylfmGDyvdr-Gy~SvetVS~lva~K-vry~~rvt 122 (319)
T KOG0371|consen 60 CPVTVCGDVHGQF-------------HDLIELF--KIGGLAPDTNYLFMGDYVDR-GYYSVETVSLLVALK-VRYPDRVT 122 (319)
T ss_pred cceEEecCcchhH-------------HHHHHHH--HccCCCCCcceeeeeeeccc-ccchHHHHHHHHHhh-ccccceeE
Confidence 3467899999532 1222222 222334443 6678999954 4433 2111111111 11123356
Q ss_pred EecCCCcc
Q 046241 407 TAIGNHER 414 (638)
Q Consensus 407 ~v~GNHD~ 414 (638)
.+.||||.
T Consensus 123 ilrGNHEs 130 (319)
T KOG0371|consen 123 ILRGNHES 130 (319)
T ss_pred EecCchHH
Confidence 78999995
No 149
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=38.96 E-value=44 Score=34.86 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=35.4
Q ss_pred HHHHHHhccccCCCCCeEEEEeccCCccCCCCCCCHHHHHHHHHHHHhCCCeE-EEEccccc
Q 046241 479 EWMKKDMASVDRSKTPWLIFSGHRPMYSSLSSSVDNKFVDAVEPLLLDNKVDL-ALFGHVHN 539 (638)
Q Consensus 479 ~WL~~~La~~~r~~~~w~IV~~H~P~yss~~~~~~~~~r~~l~~Ll~k~~Vdl-vlsGH~H~ 539 (638)
+.|+.+|+...+-..+ +.-.|.+ +.++-+.+..|+++++.|+ ||+||+-.
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~---------E~eqp~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP---------EKEQPEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec---------hHHhhHHHHHHHHHcCCCEEEEeCchhh
Confidence 5799999876433333 3334433 4567789999999999884 69999974
No 150
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=34.77 E-value=1.2e+02 Score=30.64 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=21.9
Q ss_pred EEEeCCcccCCCcHHHHHHHHHhhhhhccCc--ceEEecCCCcc
Q 046241 373 IFHIGDISYATGFLVEWDFFLHQISPVASRV--SYMTAIGNHER 414 (638)
Q Consensus 373 vl~~GDi~y~~g~~~~wd~f~~~l~~l~~~v--P~~~v~GNHD~ 414 (638)
-|+.||+++ .|+.+ .+.|.-++ -+.++. .+-...||||.
T Consensus 76 YiFmGDfVD-RGyyS-LEtfT~l~-~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 76 YIFMGDFVD-RGYYS-LETFTLLL-LLKARYPAKITLLRGNHES 116 (306)
T ss_pred eEEeccccc-ccccc-HHHHHHHH-HHhhcCCceeEEeeccchh
Confidence 567899995 45432 23333222 222233 35667999995
No 151
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=33.01 E-value=1.9e+02 Score=25.24 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCeEEEEcccccc
Q 046241 517 VDAVEPLLLDNKVDLALFGHVHNY 540 (638)
Q Consensus 517 r~~l~~Ll~k~~VdlvlsGH~H~Y 540 (638)
.+.+.+..+++++|+++.|+.+..
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~~ 97 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRRS 97 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCc
Confidence 467888889999999999988653
No 152
>PHA00407 phage lambda Rz1-like protein
Probab=32.61 E-value=29 Score=28.74 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=23.6
Q ss_pred eeeeeehhhhHHHHHHHHHHhcccccccccCc
Q 046241 4 KTLTRYSYKVFVYVLFIIILFPGSASSSLLHP 35 (638)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (638)
|||.|+.-..+-.+|+-++.++.|+|.+-+++
T Consensus 26 ktl~rwkaaLIGlllicv~tISGCaSes~lp~ 57 (84)
T PHA00407 26 KTLRRWKAALIGLLLICVATISGCASESNLPV 57 (84)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhcccCCC
Confidence 56777766666677777788888988777665
No 153
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.17 E-value=68 Score=27.88 Aligned_cols=23 Identities=13% Similarity=0.489 Sum_probs=19.9
Q ss_pred ceEEEEEEcCCCCCcEEEEEEee
Q 046241 284 GYIHTAVMTGLRPSATFSYRYGS 306 (638)
Q Consensus 284 g~~h~a~l~gL~P~T~Y~Yrvg~ 306 (638)
+-++++.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45678999999999999999954
No 154
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=27.06 E-value=44 Score=37.09 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCccEEEEeCCcccCCCcHHHHHHHHHhhhhhccCcceEEecCCCccCCCC
Q 046241 356 SVIKAMADEVDNGSVDSIFHIGDISYATGFLVEWDFFLHQISPVASRVSYMTAIGNHERDYLG 418 (638)
Q Consensus 356 ~~~~~l~~~i~~~~pDfvl~~GDi~y~~g~~~~wd~f~~~l~~l~~~vP~~~v~GNHD~~~~~ 418 (638)
..+-++...+++...|-+-.+||+-+.+.+. |..++.+.. --.+=+-|||||.-|-+
T Consensus 177 e~I~ala~~iqrLvVDhLHiVGDIyDRGP~p---d~Imd~L~~---yhsvDiQWGNHDilWmg 233 (648)
T COG3855 177 EFIIALAYLIQRLVVDHLHIVGDIYDRGPYP---DKIMDTLIN---YHSVDIQWGNHDILWMG 233 (648)
T ss_pred HHHHHHHHHHHHHhhhheeeecccccCCCCc---hHHHHHHhh---cccccccccCcceEEee
Confidence 3444555556667789999999997544333 223332222 22344569999986654
No 155
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.05 E-value=79 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.2
Q ss_pred ceEEEEEEcCCCCCcEEEEEEee
Q 046241 284 GYIHTAVMTGLRPSATFSYRYGS 306 (638)
Q Consensus 284 g~~h~a~l~gL~P~T~Y~Yrvg~ 306 (638)
+-++++.+.++.+|+.|-|||..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45788999999999999999973
No 156
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.04 E-value=92 Score=25.98 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.3
Q ss_pred ceEEEEEEcCCCCCcEEEEEEe
Q 046241 284 GYIHTAVMTGLRPSATFSYRYG 305 (638)
Q Consensus 284 g~~h~a~l~gL~P~T~Y~Yrvg 305 (638)
+-++++.+.++ +|..|.|+|.
T Consensus 39 ~G~W~~~v~~~-~g~~Y~y~v~ 59 (85)
T cd02853 39 DGWFEAEVPGA-AGTRYRYRLD 59 (85)
T ss_pred CcEEEEEeCCC-CCCeEEEEEC
Confidence 34678899999 9999999997
No 157
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=24.32 E-value=94 Score=26.74 Aligned_cols=24 Identities=8% Similarity=0.065 Sum_probs=20.6
Q ss_pred ceEEEEEEcCCCCCcEEEEEEeeC
Q 046241 284 GYIHTAVMTGLRPSATFSYRYGSD 307 (638)
Q Consensus 284 g~~h~a~l~gL~P~T~Y~Yrvg~~ 307 (638)
+-++++.+.++.+|..|.|+|...
T Consensus 46 ~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 46 NGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCEEEEEeCCccCCcEEEEEEEEe
Confidence 457889999999999999999754
No 158
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=23.48 E-value=3.7e+02 Score=33.34 Aligned_cols=242 Identities=17% Similarity=0.250 Sum_probs=116.5
Q ss_pred CccccccccccCC-CCCCeeEEEecCCC-CCCCCCEEEEEEecCC---CCCCCCEEEEEcCCCCCcccccccccc-cc-c
Q 046241 53 FRLLNRRFLSECP-DSNPYLQINVSKSS-DLSDDEFVTVTVSGVL---LPAESDWVAMISPSDSNVETCLSAEAM-YV-Q 125 (638)
Q Consensus 53 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~~~~~~~~~~-~~-~ 125 (638)
|-..+++.++.|. +-+|...+.=.+.+ .+.+++.+.|.=.|.. +++.+| .-.-+|-..+.. =. -
T Consensus 437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~D---------aG~YtC~A~N~~G~a~~ 507 (1051)
T KOG3513|consen 437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSD---------AGKYTCVAENKLGKAES 507 (1051)
T ss_pred EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCccc---------CcEEEEEEEcccCccce
Confidence 5567889999995 46777666654444 4666667766444421 223333 223346543211 00 0
Q ss_pred cCC--CCCCCccccccceeEEccCCccccccccccccccCCCcceee------------------ecc--eEEEEEEeee
Q 046241 126 TGD--VSSLPLLCHYPVKAKLMSNDRDYLSCKKKECKKYSNGKCVVT------------------TCS--GSIKFHVINI 183 (638)
Q Consensus 126 ~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~g~--g~~~~~l~n~ 183 (638)
|+. +...+.+-++|...---..+.-.|.|..+.-. ...-.-+|+ -|+ |-|.++=+.+
T Consensus 508 ~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~-~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l 586 (1051)
T KOG3513|consen 508 TGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDP-SLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSL 586 (1051)
T ss_pred EEEEEEecCceEEeccchhhhccCceEEEEeecccCC-CcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeecc
Confidence 111 23566666777666555444445544332100 000000111 111 2244444444
Q ss_pred ccc--eEEEEEecCCCcceeeccccccccCCCCCCceEEEeecCCCCCceEEEEEeCCCC-CcEEEEcCCCCccceeeEe
Q 046241 184 RTD--IEFVFFAGGFDTPCILNRTNPINFANPKSPLYGHLSSSDSTATSMRVTWVSGDKE-PQQVQYGDGKSETSKVTTF 260 (638)
Q Consensus 184 r~~--~~f~~f~~~~~~~~~~~~s~~~~f~~~~~P~~~~ls~~~~~~~sm~V~W~t~~~~-~~~V~yg~~~~~~~~~~t~ 260 (638)
+.. |.++.=.. +. .+-+.+..+--..|.+|..+++.-.. .+.++|+|.-+... .++..|-...... ....|
T Consensus 587 ~~~G~Y~C~aqT~-~D--s~s~~A~l~V~gpPgpP~~v~~~~i~--~t~~~lsW~~g~dn~SpI~~Y~iq~rt~-~~~~W 660 (1051)
T KOG3513|consen 587 EDSGKYTCVAQTA-LD--SASARADLLVRGPPGPPPDVHVDDIS--DTTARLSWSPGSDNNSPIEKYTIQFRTP-FPGKW 660 (1051)
T ss_pred ccCceEEEEEEEe-ec--chhcccceEEecCCCCCCceeEeeec--cceEEEEeecCCCCCCCceEEeEEecCC-CCCcc
Confidence 443 33332221 11 11111112222346778878876654 47899999987543 5566664321100 11112
Q ss_pred ecCCcccccccCCCCCCcCccCCceEEEEEEcCCCCCcEEEEEEeeCC-CCc---c-eeeEEECCCCC
Q 046241 261 TQDDMCNATALQSPAKDFGWHDPGYIHTAVMTGLRPSATFSYRYGSDL-VGW---S-DKIQFKTPPAG 323 (638)
Q Consensus 261 ~~~~~c~~~~~~~pa~~~g~~~~g~~h~a~l~gL~P~T~Y~Yrvg~~~-~~~---S-~~~sF~T~p~~ 323 (638)
..- .+.|... .|- +++++.+|.|-..|.+||..-+ .|- | +.-..+|.++.
T Consensus 661 ~~v-------~~vp~~~-----~~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~ 715 (1051)
T KOG3513|consen 661 KAV-------TTVPGNI-----TGD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAA 715 (1051)
T ss_pred eEe-------eECCCcc-----cCc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCC
Confidence 110 0123332 344 6799999999999999997632 121 2 23346776543
No 159
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=22.89 E-value=1.6e+02 Score=31.84 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=23.0
Q ss_pred EEEEeCCcccCCCcHH-HHHHHHHhhhhhccCcceEEecCCCccC
Q 046241 372 SIFHIGDISYATGFLV-EWDFFLHQISPVASRVSYMTAIGNHERD 415 (638)
Q Consensus 372 fvl~~GDi~y~~g~~~-~wd~f~~~l~~l~~~vP~~~v~GNHD~~ 415 (638)
--+++||.++. |+-+ +--.++-.++ +.-...++...||||-.
T Consensus 117 ~YLFLGDYVDR-GyFSiECvlYLwsLK-i~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 117 RYLFLGDYVDR-GYFSIECVLYLWSLK-INYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEeecccccc-ceeeeehHHHHHHHh-cCCCCeEEEecCCcchh
Confidence 36789999954 4421 1111111122 22234578899999963
No 160
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.35 E-value=1.1e+02 Score=28.58 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.1
Q ss_pred EEecCCCCCCCCCEEEEEEecCCCCCC
Q 046241 73 INVSKSSDLSDDEFVTVTVSGVLLPAE 99 (638)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (638)
|+|..+.++..|+.|+|.++++.+|+.
T Consensus 91 i~I~f~~PV~pG~tv~V~l~~v~NP~~ 117 (146)
T PF10989_consen 91 ITITFDEPVPPGTTVTVVLSPVRNPRS 117 (146)
T ss_pred EEEEeCCCCCCCCEEEEEEEeeeCCCC
Confidence 444455899999999999999988876
No 161
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=22.00 E-value=6.6e+02 Score=23.49 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=40.6
Q ss_pred ccccccccccCCC---CCCeeEEEecCCCCCCCCCEEEEEEecCCC---CCCCCEEEEEcCCC-CCcccccc
Q 046241 54 RLLNRRFLSECPD---SNPYLQINVSKSSDLSDDEFVTVTVSGVLL---PAESDWVAMISPSD-SNVETCLS 118 (638)
Q Consensus 54 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~p~~-~~~~~~~~ 118 (638)
+.+..+.+++|.. .+|+++..|-+ ..+| .|-|.-+--.+ .+ .|||-.=+-.. .+.+.|.+
T Consensus 21 ~~~~~~~~lqf~~ddI~dp~v~~ev~~---~~dg-~V~ik~~~~nKfWr~s-~~WI~a~s~d~~e~~sscTL 87 (139)
T smart00791 21 QSIQQYGLLQFSADKILDPLVQFEVFP---TYNG-LVHIKSNYTNKFWRLS-HYWITADANDPDENKSACTL 87 (139)
T ss_pred EeecccceeEecccccCCcceeEEEEE---cCCC-cEEEEecCCCceEccC-CCEEEecCCCCccCCCcccE
Confidence 4589999999987 78999999975 2244 77776443322 33 89997665433 44556654
Done!