BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046242
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DJ2|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ2|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 443
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 1 VDVDIATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEEL 56
+D+D T+ + P+ + P ++ DL+ + V SG F TE L
Sbjct: 246 LDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENL 301
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 20 LLLVETADRPGLLVDLVKIFTVINVN---VESGEFDTEELLAKAKFHVSYKGEAIIKPLQ 76
L+ D+PGLL ++ F + N+N +ES T+ L +F V AI ++
Sbjct: 191 FLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTQ--LGXYRFFVQ-ADSAITTDIK 247
Query: 77 QVLA 80
+V+A
Sbjct: 248 KVIA 251
>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
Mutase From Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 39 FTVINVNVESGEFDTEELLAKAKFHVSYKGEAI 71
T IN+ + GEFD E A HV G ++
Sbjct: 79 LTRINIAIREGEFDRNETFLAAMNHVKQHGTSL 111
>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
Cocrystallized With 3-Phosphoglycerate
pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Stearothermophilus Complexed With 2-Phosphoglycerate
pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
Bacillus Stearothermophilus Complexed With
2-Phosphoglycerate
Length = 511
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 39 FTVINVNVESGEFDTEELLAKAKFHVSYKGEAI 71
T IN+ + GEFD E A HV G ++
Sbjct: 79 LTRINIAIREGEFDRNETFLAAMNHVKQHGTSL 111
>pdb|2Z2C|A Chain A, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|B Chain B, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|C Chain C, Mura Inhibited By Unag-Cnicin Adduct
pdb|2Z2C|D Chain D, Mura Inhibited By Unag-Cnicin Adduct
Length = 423
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
V TA P D+ FT++N+ E F TE + HV
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHV 335
>pdb|3SWD|A Chain A, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|B Chain B, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|C Chain C, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|D Chain D, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|E Chain E, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|F Chain F, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|G Chain G, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|H Chain H, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|I Chain I, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|J Chain J, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|K Chain K, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
pdb|3SWD|L Chain L, E. Coli Mura In Complex With Udp-N-Acetylmuramic Acid And
Covalent Adduct Of Pep With Cys115
Length = 418
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
V TA P D+ FT++N+ E F TE + HV
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHV 335
>pdb|1A2N|A Chain A, Structure Of The C115a Mutant Of Mura Complexed With The
Fluorinated Analog Of The Reaction Tetrahedral
Intermediate
Length = 419
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
V TA P D+ FT++N+ E F TE + HV
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHV 335
>pdb|3KQJ|A Chain A, Mura Binary Complex With Udp-N-Acetylglucosamine
pdb|3KR6|A Chain A, Mura Dead-End Complex With Fosfomycin
Length = 419
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
V TA P D+ FT++N+ E F TE + HV
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHV 335
>pdb|3ISS|A Chain A, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|B Chain B, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|C Chain C, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|D Chain D, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|E Chain E, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|F Chain F, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|G Chain G, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|H Chain H, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|I Chain I, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|J Chain J, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|K Chain K, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
pdb|3ISS|L Chain L, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase
(Mura):udp-N- Acetylmuramic Acid:phosphite From
Escherichia Coli
Length = 418
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
V TA P D+ FT++N+ E F TE + HV
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHV 335
>pdb|1UAE|A Chain A, Structure Of Udp-N-Acetylglucosamine Enolpyruvyl
Transferase
Length = 419
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
V TA P D+ FT++N+ E F TE + HV
Sbjct: 294 VRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMHV 335
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 1 VDVDIATHISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAK 59
+ + I IY G N R L VE R LV L+K + N+ +GE T + K
Sbjct: 197 IRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELV-LLKGESREIYNISAGEEKTNLEVVK 255
Query: 60 AKFHVSYKGEAIIKPLQQVLANSLRYFL 87
+ KGE +I+ ++ + LRY L
Sbjct: 256 IILRLMGKGEELIELVEDRPGHDLRYSL 283
>pdb|1DJ3|A Chain A, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
pdb|1DJ3|B Chain B, Structures Of Adenylosuccinate Synthetase From Triticum
Aestivum And Arabidopsis Thaliana
Length = 442
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 1 VDVDIATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEEL 56
+D+D T+ + P+ + P ++ DL+ + V SG F TE L
Sbjct: 245 LDIDFGTYPFVTSSSPSAGGICTGLGIAPRVIGDLIGVVKAYTTRVGSGPFPTELL 300
>pdb|2IFY|A Chain A, Structure Of Bacillus Anthracis Cofactor-Independent
Phosphoglucerate Mutase
Length = 508
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 39 FTVINVNVESGEFDTEELLAKAKFHVSYKGEAI 71
T +NV + GEFD E A V KG A+
Sbjct: 77 LTRVNVAIREGEFDKNETFQSAIKSVKEKGTAL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,678,048
Number of Sequences: 62578
Number of extensions: 90624
Number of successful extensions: 202
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 27
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)