BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046242
(97 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0J709|UP12_ORYSJ Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2
Length = 283
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/97 (82%), Positives = 88/97 (90%)
Query: 1 VDVDIATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKA 60
VDVDIATHI IYDDGP+RSLL+VETADRPGLLVDLVKI IN+ V+SGEFDTE LLAKA
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246
Query: 61 KFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTEEASF 97
KFHVSY+G+ +IK LQQVLANSLRYFLRRPTTEE S+
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283
>sp|P83643|UP12_ORYSI Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza
sativa subsp. indica GN=OsI_027381 PE=1 SV=2
Length = 283
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/97 (82%), Positives = 88/97 (90%)
Query: 1 VDVDIATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKA 60
VDVDIATHI IYDDGP+RSLL+VETADRPGLLVDLVKI IN+ V+SGEFDTE LLAKA
Sbjct: 187 VDVDIATHIDIYDDGPDRSLLVVETADRPGLLVDLVKIIDDINITVQSGEFDTEGLLAKA 246
Query: 61 KFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTEEASF 97
KFHVSY+G+ +IK LQQVLANSLRYFLRRPTTEE S+
Sbjct: 247 KFHVSYRGKPLIKALQQVLANSLRYFLRRPTTEEGSY 283
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 4 DIATHISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVES------GEFDTEEL 56
++ THI+ ++G + +++ V+T DRPGLL DL + NV + + GE +
Sbjct: 812 NVPTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSF 871
Query: 57 LAKAKFHVSYKGEAIIKPLQQVLANSL 83
K F + Y EA + L+ L ++
Sbjct: 872 YVKDMFGLKYHSEAKQRTLETKLRKAI 898
>sp|Q5ZUS2|GLND_LEGPH [Protein-PII] uridylyltransferase OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=glnD PE=3 SV=1
Length = 861
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DIATHISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
++ T I+ DD N ++ L + T DRPGLL + ++F +N+++ + + T + F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 63 HVS 65
++S
Sbjct: 831 YIS 833
>sp|A5ICM0|GLND_LEGPC [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Corby) GN=glnD PE=3 SV=1
Length = 861
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DIATHISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
++ T I+ DD N ++ L + T DRPGLL + ++F +N+++ + + T + F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 63 HVS 65
++S
Sbjct: 831 YIS 833
>sp|Q5X4J1|GLND_LEGPA [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Paris) GN=glnD PE=3 SV=1
Length = 861
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DIATHISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
++ T I+ DD N ++ L + T DRPGLL + ++F +N+++ + + T + F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 63 HVS 65
++S
Sbjct: 831 YIS 833
>sp|Q5WVX6|GLND_LEGPL [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Lens) GN=glnD PE=3 SV=1
Length = 861
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 DIATHISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
++ T I+ DD N ++ L + T DRPGLL + ++F +N+++ + + T + F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 63 HVS 65
++S
Sbjct: 831 YIS 833
>sp|Q1QDM9|GLND_PSYCK [Protein-PII] uridylyltransferase OS=Psychrobacter cryohalolentis
(strain K5) GN=glnD PE=3 SV=1
Length = 913
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 4 DIATHISI-YDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
D+AT I+ ++D N+ ++ +ET D+PGLL + ++F + V + T A+ F
Sbjct: 821 DVATTINFDFNDASNQHIMSLETLDQPGLLARVGQVFLQQQIEVHAARITTLGERAEDMF 880
Query: 63 HVSYKGEAI-----IKPLQQVLANSL 83
++S + + +K L+ L +SL
Sbjct: 881 YISDQNDQALSADKLKTLKTALIDSL 906
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 7 THISIYDDGPN-RSLLLVETADRPGLLVDLVKIFTVINVNVESG-----------EFDTE 54
THI+ ++G + +++ V+T DRPGLL DL + N+ + S F +
Sbjct: 838 THIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVK 897
Query: 55 ELLAKAKFHVSYKGEAIIKPLQQVL 79
++ K H + E + K L+Q +
Sbjct: 898 DMFG-LKLHQKNRQETLEKKLRQAI 921
>sp|Q7NTY6|GLND_CHRVO [Protein-PII] uridylyltransferase OS=Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 /
NCIMB 9131 / NCTC 9757) GN=glnD PE=3 SV=1
Length = 856
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 5 IATHISIY-DDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFH 63
I +SI DD + +L + DRPGLL + K+ +NV S + T A+ F
Sbjct: 772 ITPQVSIRPDDKDSDFILSIVAGDRPGLLARIAKVLADYRLNVRSAKIMTLGGRAEDSFQ 831
Query: 64 VS---YKGEAIIKPLQQVLANSLR 84
VS K + L+ L +LR
Sbjct: 832 VSGAALKDDKTALALEAALITALR 855
>sp|Q485H4|GLND_COLP3 [Protein-PII] uridylyltransferase OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=glnD PE=3 SV=1
Length = 878
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT 53
NR+++ + DRPGLL ++ ++F VN+ S + T
Sbjct: 806 NRTMIEIIALDRPGLLSNISQVFLEARVNIHSAKITT 842
>sp|Q4FUP5|GLND_PSYA2 [Protein-PII] uridylyltransferase OS=Psychrobacter arcticus (strain
DSM 17307 / 273-4) GN=glnD PE=3 SV=1
Length = 915
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 4 DIATHISI-YDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
D+ T I+ ++D ++ ++ +ET D+PGLL + ++F + V + T A+ F
Sbjct: 823 DVETTINFEFNDASSQHIMSLETLDQPGLLARVGQVFLQQQIEVHAARITTLGERAEDMF 882
Query: 63 HVSYKGEAIIKPLQQVLANSLR 84
++S + + Q + AN L+
Sbjct: 883 YISDQND------QALSANKLK 898
>sp|P29379|NHB2_RHORH Low-molecular weight cobalt-containing nitrile hydratase subunit
beta OS=Rhodococcus rhodochrous PE=1 SV=1
Length = 226
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 38 IFTVINVNVESGEFDTEELLAKAKFHVSYKGEA--------IIKPLQQVLANSLRYFLRR 89
+ +I+ +E+G FD++EL + ++++ + + +++ + Q++ + Y RR
Sbjct: 73 MHAMIHHGIEAGIFDSDELDRRTQYYMDHPDDTTPTRQDPQLVETISQLITHGADY--RR 130
Query: 90 PTTEEASF 97
PT EA+F
Sbjct: 131 PTDTEAAF 138
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1
Length = 757
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 21 LLVETADRPGLLVDLVKIFTVINVNV 46
L V TADRPGLL D+ F+ VN+
Sbjct: 686 LRVLTADRPGLLADITNTFSKKGVNI 711
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQ 77
+++ V DRPGLL L + +N+N+ S T A+ F+V+ G I P +Q
Sbjct: 848 TMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQ 907
Query: 78 -VLANSLRYFLRRPTTEE 94
+ +L + L T E
Sbjct: 908 AAIKRALVHLLASGNTAE 925
>sp|B4RLK3|GLND_NEIG2 [Protein-PII] uridylyltransferase OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=glnD PE=3 SV=1
Length = 852
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 5 IATHISIY--DDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
IA I+I +D P+R + + +RP LL D+ ++F NV++ + T + + F
Sbjct: 768 IAPSITITPEEDYPDRYSVEITAVNRPFLLADMAEVFFAHNVSLRYAKISTLDERVEDSF 827
Query: 63 HV---SYKGEAIIKPLQQVLANSL 83
V K I L+Q L L
Sbjct: 828 TVFSPDLKNPKIQSSLKQALLEQL 851
>sp|Q5F8H5|GLND_NEIG1 [Protein-PII] uridylyltransferase OS=Neisseria gonorrhoeae (strain
ATCC 700825 / FA 1090) GN=glnD PE=3 SV=1
Length = 852
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 5 IATHISIY--DDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
IA I+I +D P+R + + +RP LL D+ ++F NV++ + T + + F
Sbjct: 768 IAPSITITPEEDYPDRYSVEITAVNRPFLLADMAEVFFAHNVSLRYAKISTLDERVEDSF 827
Query: 63 HV---SYKGEAIIKPLQQVLANSL 83
V K I L+Q L L
Sbjct: 828 TVFSPDLKNPKIQSSLKQALLEQL 851
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 9 ISIYDDGPNR-SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-Y 66
+ I ++ +R +++ V DRPGLL L + +N+N+ S T A+ F+V+
Sbjct: 837 VEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDL 896
Query: 67 KGEAIIKPLQQV 78
G I P +Q
Sbjct: 897 LGAQITAPTRQA 908
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 5 IATHISIYDDGPNR-SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFH 63
I ++I + +R +++ V DRPGLL +L + +N+N+ S T A+ F+
Sbjct: 834 IEPEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFY 893
Query: 64 VS-YKGEAIIKPLQQ 77
V+ G I P +Q
Sbjct: 894 VTDLLGAQINAPTRQ 908
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQ 77
+++ V DRPGLL +L + +N+N+ S T A+ F+V+ G I P +Q
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQ 909
Query: 78 VLANS 82
S
Sbjct: 910 AAIKS 914
>sp|Q07105|GDF9_MOUSE Growth/differentiation factor 9 OS=Mus musculus GN=Gdf9 PE=2 SV=2
Length = 441
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKP 74
P LL V+ DR GLL L K+ + + D+ L K + +Y E + KP
Sbjct: 46 PWSLLLPVDGTDRSGLLPPLFKVLSDRRGETPKLQPDSRALYYMKKLYKTYATKEGVPKP 105
Query: 75 LQQVLANSLRYFLRRPTTEEA 95
+ L N++R F E+A
Sbjct: 106 SRSHLYNTVRLFSPCAQQEQA 126
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQ 77
+++ V DRPGLL +L + +N+N+ S T A+ F+V+ G I P +Q
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPTRQ 909
Query: 78 VLANS 82
S
Sbjct: 910 AAIKS 914
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQ 77
+++ V DRPGLL L + +N+N+ S T A+ F+V+ G I P +Q
Sbjct: 850 TVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQ 909
>sp|A1KU16|GLND_NEIMF [Protein-PII] uridylyltransferase OS=Neisseria meningitidis
serogroup C / serotype 2a (strain ATCC 700532 / FAM18)
GN=glnD PE=3 SV=1
Length = 852
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 5 IATHISIY--DDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
IA I+I +D P+ + + +RP LL D+ +IF NV++ + T + A+ F
Sbjct: 768 IAPSITITPEEDYPDWYSVEITAVNRPFLLADMAEIFFAHNVSLRYAKISTLDERAEDSF 827
Query: 63 HV---SYKGEAIIKPLQQVLANSL 83
V K I L+Q L L
Sbjct: 828 TVFSPDLKNPKIQSSLKQALLEQL 851
>sp|O34098|SPOT_SPICI Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
OS=Spiroplasma citri GN=spoT PE=3 SV=1
Length = 749
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVE 47
+E DRP LLVD+ K+ + +N +V+
Sbjct: 677 IEAIDRPALLVDVTKVLSHLNASVQ 701
>sp|A3CNU0|ADDB_STRSV ATP-dependent helicase/deoxyribonuclease subunit B OS=Streptococcus
sanguinis (strain SK36) GN=rexB PE=3 SV=1
Length = 1093
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64
+E + P DLVKIFT + + G+FD+ +A H+
Sbjct: 135 LEFLEEPEKREDLVKIFTAVTAALNKGDFDSSSQIAAFAQHI 176
>sp|P42664|UVS2_XENLA Embryonic protein UVS.2 OS=Xenopus laevis PE=2 SV=2
Length = 514
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 31 LLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKP 74
++ D +K+F N N E+D ++ +++H S G+ I+P
Sbjct: 214 IIPDFLKMFEKYNTNNLGIEYDYASVMHYSRYHYSINGDITIEP 257
>sp|Q60BB2|GLND_METCA [Protein-PII] uridylyltransferase OS=Methylococcus capsulatus
(strain ATCC 33009 / NCIMB 11132 / Bath) GN=glnD PE=3
SV=1
Length = 877
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 5 IATHISIYDDGPNR-SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFH 63
+ T + +DD NR S+L + DRPGLL + + F + + + + T A+ F
Sbjct: 789 VPTKVFFHDDPQNRFSILELIATDRPGLLSKVGQAFMRTGIRLHNAKISTVGSRAEDIFF 848
Query: 64 VSYK------GEAIIKPLQQVL 79
++ + GEA L++VL
Sbjct: 849 ITDREDRPLDGEADRAALRRVL 870
>sp|Q9JZB4|GLND_NEIMB [Protein-PII] uridylyltransferase OS=Neisseria meningitidis
serogroup B (strain MC58) GN=glnD PE=3 SV=1
Length = 852
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 5 IATHISIY--DDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
IA I+I +D P+ + + +RP LL D+ ++F NV++ + T + A+ F
Sbjct: 768 IAPSITITPEEDYPDWYSVEITAVNRPFLLADMAEVFFAHNVSLRYAKISTLDERAEDSF 827
Query: 63 HV---SYKGEAIIKPLQQVLANSL 83
V K I L+Q L L
Sbjct: 828 TVFSPDLKNPKIQSSLKQTLLEQL 851
>sp|Q9JUC9|GLND_NEIMA [Protein-PII] uridylyltransferase OS=Neisseria meningitidis
serogroup A / serotype 4A (strain Z2491) GN=glnD PE=3
SV=1
Length = 852
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 5 IATHISIY--DDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62
IA I+I +D P+ + + +RP LL D+ ++F NV++ + T + A+ F
Sbjct: 768 IAPSITITPEEDYPDWYSVEITAVNRPFLLADMAEVFFAHNVSLRYAKISTLDERAEDSF 827
Query: 63 HV---SYKGEAIIKPLQQVLANSL 83
V K I L+Q L L
Sbjct: 828 TVFSLDLKNPKIQSSLKQTLLEQL 851
>sp|A7GUR8|GPMI_BACCN 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
GN=gpmI PE=3 SV=1
Length = 509
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 39 FTVINVNVESGEFDTEELLAKAKFHVSYKGEAI 71
T +NV + GEFD E A HV KG A+
Sbjct: 78 LTRVNVAIREGEFDKNETFQNAIKHVKEKGTAL 110
>sp|Q8D2M5|MURA_WIGBR UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Wigglesworthia
glossinidia brevipalpis GN=murA PE=3 SV=1
Length = 418
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 23 VETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS----YKGEAIIK 73
+ET+ PG D+ FTV+N+ TE + H+S G AIIK
Sbjct: 294 IETSPYPGFPTDMQAQFTVLNLISYGSSIITENIFENRFMHISELIKMGGRAIIK 348
>sp|Q96529|PURA_ARATH Adenylosuccinate synthetase, chloroplastic OS=Arabidopsis thaliana
GN=PURA PE=1 SV=1
Length = 490
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 1 VDVDIATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEEL 56
+D+D T+ + P+ + P ++ DL+ + V SG F TE L
Sbjct: 293 LDIDFGTYPFVTSSSPSAGGICTGLGIAPSVVGDLIGVVKAYTTRVGSGPFPTENL 348
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,250,036
Number of Sequences: 539616
Number of extensions: 1200313
Number of successful extensions: 2989
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2954
Number of HSP's gapped (non-prelim): 47
length of query: 97
length of database: 191,569,459
effective HSP length: 66
effective length of query: 31
effective length of database: 155,954,803
effective search space: 4834598893
effective search space used: 4834598893
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)