Query 046242
Match_columns 97
No_of_seqs 109 out of 578
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04897 ACT_ACR_3 ACT domain-c 100.0 1.8E-30 3.9E-35 167.2 10.4 73 18-90 1-75 (75)
2 cd04896 ACT_ACR-like_3 ACT dom 100.0 3.2E-29 6.9E-34 161.4 10.3 72 19-90 1-75 (75)
3 cd04895 ACT_ACR_1 ACT domain-c 100.0 3.6E-29 7.8E-34 160.0 9.6 68 18-85 1-70 (72)
4 PRK01759 glnD PII uridylyl-tra 99.9 6.5E-27 1.4E-31 200.8 12.2 87 2-88 766-854 (854)
5 PRK05007 PII uridylyl-transfer 99.9 2.2E-26 4.8E-31 198.1 12.0 88 2-89 791-880 (884)
6 COG2844 GlnD UTP:GlnB (protein 99.9 2.5E-24 5.4E-29 184.1 10.0 88 2-89 774-863 (867)
7 PRK04374 PII uridylyl-transfer 99.9 9.5E-23 2E-27 175.8 12.7 88 2-89 779-868 (869)
8 TIGR01693 UTase_glnD [Protein- 99.9 5.7E-22 1.2E-26 169.6 11.9 86 2-87 762-849 (850)
9 PRK00275 glnD PII uridylyl-tra 99.9 1.9E-21 4E-26 168.0 12.9 90 2-91 797-889 (895)
10 cd04925 ACT_ACR_2 ACT domain-c 99.9 3.8E-21 8.3E-26 121.4 9.4 70 19-88 1-73 (74)
11 cd04927 ACT_ACR-like_2 Second 99.8 1.4E-20 3E-25 119.8 10.2 70 20-89 2-73 (76)
12 PRK05092 PII uridylyl-transfer 99.8 2.4E-20 5.2E-25 161.3 13.0 93 2-94 826-921 (931)
13 PRK03381 PII uridylyl-transfer 99.8 1.9E-20 4.2E-25 159.7 11.6 82 2-84 690-773 (774)
14 cd04900 ACT_UUR-like_1 ACT dom 99.8 4.5E-20 9.8E-25 115.7 9.7 69 19-87 2-73 (73)
15 PRK03059 PII uridylyl-transfer 99.8 8.8E-20 1.9E-24 157.1 12.4 85 2-88 769-855 (856)
16 PRK01759 glnD PII uridylyl-tra 99.7 2E-16 4.3E-21 136.4 12.6 89 3-91 661-752 (854)
17 cd04926 ACT_ACR_4 C-terminal 99.7 9.7E-16 2.1E-20 96.1 10.0 65 19-83 2-67 (72)
18 cd04899 ACT_ACR-UUR-like_2 C-t 99.7 1.7E-15 3.8E-20 92.3 9.8 69 19-87 1-70 (70)
19 TIGR01693 UTase_glnD [Protein- 99.7 1.1E-15 2.4E-20 131.1 12.2 85 6-90 655-743 (850)
20 PRK05007 PII uridylyl-transfer 99.7 1.4E-15 3E-20 131.6 12.6 88 4-91 686-776 (884)
21 cd04873 ACT_UUR-ACR-like ACT d 99.5 8.2E-13 1.8E-17 79.6 9.9 69 19-87 1-70 (70)
22 PRK05092 PII uridylyl-transfer 99.4 3.4E-12 7.3E-17 111.0 12.0 85 5-89 718-806 (931)
23 cd04928 ACT_TyrKc Uncharacteri 99.4 6.8E-12 1.5E-16 79.5 9.0 63 20-87 3-67 (68)
24 PRK00275 glnD PII uridylyl-tra 99.2 1.3E-10 2.7E-15 101.2 12.3 85 7-91 689-781 (895)
25 PRK03381 PII uridylyl-transfer 99.2 2.1E-10 4.6E-15 98.5 11.6 82 6-90 587-669 (774)
26 PRK03059 PII uridylyl-transfer 99.1 5.4E-10 1.2E-14 97.0 12.1 85 6-91 665-753 (856)
27 PRK04374 PII uridylyl-transfer 99.0 2.7E-09 5.8E-14 92.9 11.9 74 15-90 687-762 (869)
28 PF01842 ACT: ACT domain; Int 99.0 1.1E-08 2.3E-13 60.7 9.6 39 19-57 1-39 (66)
29 PF13740 ACT_6: ACT domain; PD 98.8 1E-07 2.2E-12 60.1 9.2 64 18-86 2-65 (76)
30 PRK00227 glnD PII uridylyl-tra 98.7 1.7E-08 3.6E-13 86.5 5.9 68 6-88 624-691 (693)
31 COG2844 GlnD UTP:GlnB (protein 98.7 1.6E-07 3.5E-12 81.7 9.6 85 7-91 672-759 (867)
32 cd04870 ACT_PSP_1 CT domains f 98.5 3.6E-07 7.7E-12 57.1 5.9 46 20-65 1-46 (75)
33 cd04875 ACT_F4HF-DF N-terminal 98.4 7.1E-07 1.5E-11 55.3 5.2 44 20-65 1-44 (74)
34 cd04869 ACT_GcvR_2 ACT domains 98.3 1.8E-06 3.8E-11 53.8 5.9 46 20-65 1-48 (81)
35 PF13291 ACT_4: ACT domain; PD 98.3 4.4E-06 9.5E-11 52.3 6.7 48 18-65 6-55 (80)
36 PRK00194 hypothetical protein; 98.2 1.1E-05 2.4E-10 51.5 8.2 43 18-64 3-45 (90)
37 cd04872 ACT_1ZPV ACT domain pr 98.2 9.4E-06 2E-10 52.0 7.7 39 19-57 2-40 (88)
38 cd04887 ACT_MalLac-Enz ACT_Mal 98.2 1.7E-05 3.6E-10 48.4 7.7 44 21-64 2-46 (74)
39 cd04893 ACT_GcvR_1 ACT domains 98.1 4.1E-06 8.8E-11 52.9 4.5 40 19-58 2-41 (77)
40 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.0 6.5E-05 1.4E-09 45.0 8.0 36 20-55 2-37 (79)
41 cd04894 ACT_ACR-like_1 ACT dom 98.0 4.3E-05 9.2E-10 48.4 6.8 67 19-86 1-67 (69)
42 PRK11589 gcvR glycine cleavage 97.9 4.7E-05 1E-09 56.2 7.2 50 16-65 6-55 (190)
43 cd04886 ACT_ThrD-II-like C-ter 97.9 9.6E-05 2.1E-09 43.6 7.2 33 21-53 1-33 (73)
44 cd04878 ACT_AHAS N-terminal AC 97.9 0.00015 3.3E-09 42.6 7.8 45 20-64 2-47 (72)
45 cd04905 ACT_CM-PDT C-terminal 97.8 0.00027 5.9E-09 44.3 8.8 66 19-85 2-68 (80)
46 cd04877 ACT_TyrR N-terminal AC 97.8 3.8E-05 8.2E-10 47.7 4.4 35 20-54 2-36 (74)
47 cd04889 ACT_PDH-BS-like C-term 97.8 0.00012 2.6E-09 42.7 5.8 45 21-65 1-46 (56)
48 PRK11589 gcvR glycine cleavage 97.7 5.4E-05 1.2E-09 55.9 4.8 47 19-65 96-144 (190)
49 PRK00227 glnD PII uridylyl-tra 97.7 0.00017 3.8E-09 62.1 8.6 65 19-84 547-614 (693)
50 cd04879 ACT_3PGDH-like ACT_3PG 97.7 0.00018 4E-09 42.0 6.0 44 21-64 2-47 (71)
51 cd04882 ACT_Bt0572_2 C-termina 97.7 0.00023 4.9E-09 41.9 6.4 36 20-55 1-36 (65)
52 cd04908 ACT_Bt0572_1 N-termina 97.6 0.00015 3.3E-09 43.9 4.9 44 20-65 3-46 (66)
53 cd04903 ACT_LSD C-terminal ACT 97.6 0.00077 1.7E-08 39.5 7.8 33 21-53 2-34 (71)
54 cd04888 ACT_PheB-BS C-terminal 97.6 0.00093 2E-08 40.6 8.0 45 20-64 2-47 (76)
55 TIGR00119 acolac_sm acetolacta 97.6 0.00065 1.4E-08 49.0 8.3 65 19-86 2-66 (157)
56 PRK06027 purU formyltetrahydro 97.6 0.00094 2E-08 51.9 9.7 46 16-65 4-51 (286)
57 cd04909 ACT_PDH-BS C-terminal 97.6 0.00089 1.9E-08 40.3 7.7 46 20-65 3-50 (69)
58 COG3830 ACT domain-containing 97.5 0.00015 3.3E-09 48.3 4.4 34 17-50 2-35 (90)
59 cd02116 ACT ACT domains are co 97.5 0.00087 1.9E-08 35.8 6.5 35 21-55 1-35 (60)
60 cd04874 ACT_Af1403 N-terminal 97.5 0.00098 2.1E-08 39.3 7.1 36 20-55 2-37 (72)
61 PRK13011 formyltetrahydrofolat 97.4 0.00048 1E-08 53.6 6.4 48 16-65 5-52 (286)
62 PRK11895 ilvH acetolactate syn 97.4 0.0014 3.1E-08 47.4 8.4 35 19-53 3-37 (161)
63 PRK08577 hypothetical protein; 97.4 0.0048 1E-07 42.6 10.4 41 15-55 53-93 (136)
64 cd04876 ACT_RelA-SpoT ACT dom 97.4 0.0022 4.9E-08 36.0 7.4 35 21-55 1-35 (71)
65 cd04902 ACT_3PGDH-xct C-termin 97.3 0.0016 3.5E-08 39.0 6.7 39 21-59 2-42 (73)
66 TIGR00655 PurU formyltetrahydr 97.2 0.0036 7.8E-08 48.6 9.2 44 20-65 2-45 (280)
67 cd04901 ACT_3PGDH C-terminal A 97.2 0.00069 1.5E-08 40.4 4.2 37 21-57 2-38 (69)
68 PRK06737 acetolactate synthase 97.2 0.0037 7.9E-08 40.3 7.7 63 19-85 3-66 (76)
69 CHL00100 ilvH acetohydroxyacid 97.2 0.00058 1.3E-08 50.1 4.2 35 19-53 3-37 (174)
70 PRK08178 acetolactate synthase 97.1 0.00078 1.7E-08 45.4 4.2 38 15-52 5-42 (96)
71 cd04883 ACT_AcuB C-terminal AC 97.1 0.0044 9.6E-08 37.2 7.2 33 19-51 2-34 (72)
72 PRK07334 threonine dehydratase 97.1 0.0035 7.6E-08 50.2 8.2 37 18-54 326-362 (403)
73 PRK13010 purU formyltetrahydro 97.0 0.0054 1.2E-07 47.9 8.7 46 17-64 8-53 (289)
74 cd04884 ACT_CBS C-terminal ACT 97.0 0.0029 6.2E-08 38.7 5.6 34 21-54 2-35 (72)
75 PRK11152 ilvM acetolactate syn 96.9 0.002 4.4E-08 41.4 4.5 36 18-53 3-38 (76)
76 PRK13562 acetolactate synthase 96.9 0.0016 3.6E-08 42.8 3.8 64 19-85 3-67 (84)
77 cd04931 ACT_PAH ACT domain of 96.9 0.024 5.3E-07 37.2 9.4 73 15-89 11-84 (90)
78 PRK04435 hypothetical protein; 96.7 0.012 2.7E-07 41.5 7.6 50 15-64 66-116 (147)
79 COG2716 GcvR Glycine cleavage 96.6 0.0035 7.5E-08 46.3 4.3 49 17-65 4-52 (176)
80 cd04880 ACT_AAAH-PDT-like ACT 96.6 0.038 8.3E-07 33.8 8.3 62 23-85 4-66 (75)
81 COG2716 GcvR Glycine cleavage 96.5 0.0019 4.2E-08 47.6 2.6 48 18-65 92-141 (176)
82 PRK10872 relA (p)ppGpp synthet 96.3 0.021 4.6E-07 49.9 8.0 47 18-64 666-714 (743)
83 TIGR00691 spoT_relA (p)ppGpp s 96.0 0.02 4.3E-07 49.4 6.5 38 18-55 610-647 (683)
84 PRK11092 bifunctional (p)ppGpp 96.0 0.02 4.3E-07 49.7 6.4 38 18-55 626-663 (702)
85 PRK11899 prephenate dehydratas 95.9 0.072 1.6E-06 41.5 8.5 56 18-73 194-250 (279)
86 cd04898 ACT_ACR-like_4 ACT dom 95.9 0.019 4.1E-07 37.3 4.4 67 21-87 3-74 (77)
87 cd04904 ACT_AAAH ACT domain of 95.8 0.11 2.3E-06 32.3 7.6 48 21-68 3-51 (74)
88 COG0788 PurU Formyltetrahydrof 95.8 0.025 5.5E-07 44.5 5.6 47 17-65 6-52 (287)
89 PF13710 ACT_5: ACT domain; PD 95.8 0.049 1.1E-06 33.3 5.8 27 27-53 1-27 (63)
90 COG0317 SpoT Guanosine polypho 95.7 0.024 5.2E-07 49.4 5.8 47 17-63 626-672 (701)
91 TIGR00719 sda_beta L-serine de 95.3 0.13 2.9E-06 38.0 7.9 48 15-62 145-194 (208)
92 PF13840 ACT_7: ACT domain ; P 95.2 0.028 6.1E-07 34.3 3.3 45 16-65 4-52 (65)
93 cd04929 ACT_TPH ACT domain of 95.0 0.26 5.6E-06 31.1 7.5 50 21-70 3-53 (74)
94 PRK06349 homoserine dehydrogen 95.0 0.18 3.8E-06 41.0 8.3 52 15-66 345-396 (426)
95 PRK10622 pheA bifunctional cho 94.8 0.24 5.1E-06 40.2 8.5 57 17-73 296-353 (386)
96 COG0077 PheA Prephenate dehydr 94.8 0.26 5.6E-06 38.7 8.4 56 17-72 193-249 (279)
97 cd04871 ACT_PSP_2 ACT domains 94.5 0.023 5E-07 36.5 1.7 29 20-48 1-30 (84)
98 PRK08818 prephenate dehydrogen 94.5 0.15 3.3E-06 41.1 6.6 51 17-68 294-345 (370)
99 PRK06382 threonine dehydratase 94.1 0.45 9.8E-06 38.2 8.6 37 15-51 327-363 (406)
100 cd04885 ACT_ThrD-I Tandem C-te 93.6 0.6 1.3E-05 28.2 6.7 59 22-85 2-61 (68)
101 PRK11790 D-3-phosphoglycerate 93.3 0.23 5E-06 40.3 5.6 59 19-80 339-397 (409)
102 COG4747 ACT domain-containing 93.0 0.13 2.9E-06 36.5 3.4 44 19-62 70-114 (142)
103 COG4747 ACT domain-containing 92.9 0.24 5.2E-06 35.2 4.6 37 20-56 5-41 (142)
104 PRK13581 D-3-phosphoglycerate 92.9 0.36 7.9E-06 40.2 6.4 63 15-80 449-513 (526)
105 cd04930 ACT_TH ACT domain of t 92.6 0.29 6.4E-06 33.4 4.6 53 18-70 41-94 (115)
106 cd04906 ACT_ThrD-I_1 First of 92.4 1.8 3.9E-05 27.3 8.5 61 20-85 3-64 (85)
107 TIGR01327 PGDH D-3-phosphoglyc 92.3 0.38 8.2E-06 40.1 5.8 63 16-81 449-513 (525)
108 COG2150 Predicted regulator of 92.2 0.32 6.9E-06 35.8 4.6 35 16-50 91-127 (167)
109 cd04932 ACT_AKiii-LysC-EC_1 AC 91.5 1.9 4.2E-05 26.9 7.2 31 19-49 2-35 (75)
110 TIGR01127 ilvA_1Cterm threonin 91.2 0.45 9.7E-06 37.6 4.8 33 17-49 304-336 (380)
111 cd04935 ACT_AKiii-DAPDC_1 ACT 91.1 2.5 5.5E-05 26.3 7.8 54 26-85 12-67 (75)
112 cd04891 ACT_AK-LysC-DapG-like_ 90.9 0.37 8.1E-06 26.9 3.2 27 25-51 8-34 (61)
113 COG1707 ACT domain-containing 90.7 1.2 2.5E-05 33.6 6.3 45 21-65 5-49 (218)
114 PRK06545 prephenate dehydrogen 90.4 1.2 2.6E-05 35.1 6.6 50 16-65 288-337 (359)
115 cd04868 ACT_AK-like ACT domain 90.4 0.59 1.3E-05 25.6 3.6 31 20-50 2-35 (60)
116 cd04919 ACT_AK-Hom3_2 ACT doma 90.0 2.1 4.5E-05 24.9 6.0 35 19-53 2-39 (66)
117 cd04921 ACT_AKi-HSDH-ThrA-like 90.0 2.8 6.1E-05 25.3 6.8 68 19-92 2-73 (80)
118 PRK10820 DNA-binding transcrip 89.5 1.6 3.4E-05 36.4 6.9 41 20-65 2-42 (520)
119 PLN02317 arogenate dehydratase 89.4 2.8 6.1E-05 34.3 8.2 53 18-70 283-350 (382)
120 cd04922 ACT_AKi-HSDH-ThrA_2 AC 89.4 0.86 1.9E-05 26.4 4.0 35 19-53 2-39 (66)
121 cd04913 ACT_AKii-LysC-BS-like_ 89.0 0.57 1.2E-05 27.3 3.0 27 25-51 9-35 (75)
122 TIGR01270 Trp_5_monoox tryptop 88.9 2.3 5E-05 35.7 7.5 56 15-70 28-85 (464)
123 PRK08198 threonine dehydratase 88.6 0.94 2E-05 36.1 4.8 38 15-52 324-361 (404)
124 PRK11898 prephenate dehydratas 87.4 5.1 0.00011 31.0 8.1 53 18-70 196-250 (283)
125 KOG2663 Acetolactate synthase, 85.9 0.78 1.7E-05 36.3 2.9 45 16-62 75-119 (309)
126 TIGR01268 Phe4hydrox_tetr phen 85.8 7.2 0.00016 32.6 8.6 53 18-70 16-69 (436)
127 cd04912 ACT_AKiii-LysC-EC-like 85.7 6.1 0.00013 24.1 7.2 62 19-85 2-67 (75)
128 cd04937 ACT_AKi-DapG-BS_2 ACT 85.7 1.9 4.2E-05 25.5 4.0 33 19-53 2-37 (64)
129 COG3978 Acetolactate synthase 84.4 9.5 0.00021 25.2 8.1 48 18-65 3-52 (86)
130 cd04892 ACT_AK-like_2 ACT doma 83.7 2.4 5.1E-05 23.6 3.6 32 20-51 2-36 (65)
131 cd04916 ACT_AKiii-YclM-BS_2 AC 83.4 2.8 6.2E-05 24.1 4.0 35 19-53 2-39 (66)
132 cd04924 ACT_AK-Arch_2 ACT doma 82.8 3.2 6.9E-05 23.8 4.0 35 19-53 2-39 (66)
133 cd04934 ACT_AK-Hom3_1 CT domai 82.0 9.1 0.0002 23.7 6.1 54 26-85 12-65 (73)
134 cd04890 ACT_AK-like_1 ACT doma 81.5 3.3 7.1E-05 24.0 3.8 36 26-65 11-46 (62)
135 COG0440 IlvH Acetolactate synt 81.1 1.2 2.7E-05 32.5 2.1 34 18-51 4-37 (163)
136 PRK06635 aspartate kinase; Rev 77.1 4.4 9.6E-05 32.2 4.3 34 16-49 338-374 (404)
137 cd04923 ACT_AK-LysC-DapG-like_ 75.9 5.7 0.00012 22.4 3.5 31 20-50 2-35 (63)
138 PF05088 Bac_GDH: Bacterial NA 75.2 46 0.00099 32.1 10.8 84 6-89 474-567 (1528)
139 TIGR00656 asp_kin_monofn aspar 74.7 6 0.00013 31.4 4.5 33 16-48 335-370 (401)
140 cd04933 ACT_AK1-AT_1 ACT domai 73.5 3.3 7.1E-05 26.3 2.3 24 26-49 12-35 (78)
141 PF05088 Bac_GDH: Bacterial NA 72.9 5.8 0.00013 37.8 4.5 74 15-89 14-106 (1528)
142 cd04936 ACT_AKii-LysC-BS-like_ 70.9 5.9 0.00013 22.3 2.8 25 26-50 11-35 (63)
143 PF14226 DIOX_N: non-haem diox 70.8 1.8 3.9E-05 28.0 0.6 48 25-91 10-57 (116)
144 cd04918 ACT_AK1-AT_2 ACT domai 68.8 19 0.00042 21.2 4.8 42 20-64 3-47 (65)
145 PRK08526 threonine dehydratase 68.0 10 0.00022 30.7 4.5 36 15-50 323-358 (403)
146 cd04917 ACT_AKiii-LysC-EC_2 AC 67.0 19 0.00041 21.0 4.5 42 19-65 2-47 (64)
147 PRK08210 aspartate kinase I; R 66.6 12 0.00026 29.9 4.6 36 15-50 268-304 (403)
148 cd04920 ACT_AKiii-DAPDC_2 ACT 66.2 13 0.00028 22.0 3.7 41 20-65 2-46 (63)
149 PRK00907 hypothetical protein; 65.9 27 0.00059 23.0 5.5 62 19-84 18-83 (92)
150 PRK06423 phosphoribosylformylg 65.5 16 0.00035 22.6 4.1 56 27-96 9-69 (73)
151 COG3283 TyrR Transcriptional r 64.2 7.8 0.00017 32.6 3.1 35 21-55 3-37 (511)
152 cd04914 ACT_AKi-DapG-BS_1 ACT 63.8 7.2 0.00016 23.5 2.3 23 27-49 11-33 (67)
153 PRK08210 aspartate kinase I; R 63.7 14 0.0003 29.5 4.5 36 16-53 337-375 (403)
154 PF06543 Lac_bphage_repr: Lact 63.7 7.8 0.00017 23.2 2.3 24 64-87 24-47 (49)
155 TIGR02079 THD1 threonine dehyd 58.7 97 0.0021 25.0 9.6 67 15-85 322-390 (409)
156 PTZ00397 macrophage migration 57.4 23 0.00049 23.4 4.0 62 26-87 15-85 (116)
157 PRK09084 aspartate kinase III; 56.4 1.1E+02 0.0024 25.1 8.6 36 15-50 303-341 (448)
158 PRK06291 aspartate kinase; Pro 56.4 22 0.00048 29.2 4.5 36 15-50 318-356 (465)
159 PLN02997 flavonol synthase 56.2 24 0.00052 27.8 4.5 56 19-93 34-89 (325)
160 PLN02639 oxidoreductase, 2OG-F 55.9 22 0.00048 27.9 4.3 57 18-93 38-94 (337)
161 TIGR00657 asp_kinases aspartat 55.3 23 0.00051 28.6 4.5 35 16-50 376-413 (441)
162 TIGR00656 asp_kin_monofn aspar 55.3 24 0.00053 27.9 4.5 35 15-49 257-294 (401)
163 PF11373 DUF3175: Protein of u 54.9 5.6 0.00012 26.4 0.7 22 61-82 55-76 (86)
164 PRK06635 aspartate kinase; Rev 54.6 14 0.00031 29.3 3.1 32 18-49 262-294 (404)
165 COG4492 PheB ACT domain-contai 54.5 19 0.00041 26.1 3.3 50 15-64 69-119 (150)
166 PLN03176 flavanone-3-hydroxyla 54.3 39 0.00086 22.8 4.9 48 27-93 52-99 (120)
167 PRK09034 aspartate kinase; Rev 53.4 26 0.00057 28.7 4.5 35 15-49 305-342 (454)
168 cd04915 ACT_AK-Ectoine_2 ACT d 52.9 23 0.00049 21.2 3.2 43 19-64 3-48 (66)
169 PRK08841 aspartate kinase; Val 52.8 25 0.00054 28.5 4.2 35 16-50 316-350 (392)
170 PRK12483 threonine dehydratase 52.0 1.4E+02 0.003 25.3 8.7 30 16-45 343-372 (521)
171 PRK07431 aspartate kinase; Pro 50.8 28 0.00061 29.3 4.4 35 16-50 517-554 (587)
172 PF13563 2_5_RNA_ligase2: 2'-5 50.4 59 0.0013 21.3 5.2 66 18-88 28-96 (153)
173 PF01765 RRF: Ribosome recycli 50.2 88 0.0019 22.1 6.3 56 19-85 45-101 (165)
174 PLN02704 flavonol synthase 49.9 32 0.00069 27.0 4.3 54 18-90 43-96 (335)
175 PRK08639 threonine dehydratase 47.4 1.5E+02 0.0033 23.9 8.6 65 15-85 333-401 (420)
176 PLN02551 aspartokinase 47.2 32 0.00069 29.1 4.1 35 15-49 363-400 (521)
177 PRK05974 phosphoribosylformylg 47.0 66 0.0014 20.2 4.7 60 27-96 9-75 (80)
178 cd04911 ACT_AKiii-YclM-BS_1 AC 46.3 72 0.0016 20.3 4.8 57 27-89 13-69 (76)
179 cd00122 MBD MeCP2, MBD1, MBD2, 44.2 45 0.00098 19.9 3.5 20 55-74 21-40 (62)
180 PLN03002 oxidoreductase, 2OG-F 43.8 46 0.001 26.1 4.4 54 21-93 18-71 (332)
181 COG3603 Uncharacterized conser 43.3 33 0.00072 24.2 3.1 41 4-47 52-95 (128)
182 PRK13436 F0F1 ATP synthase sub 43.0 81 0.0018 22.5 5.3 51 25-89 84-137 (179)
183 PRK08474 F0F1 ATP synthase sub 41.5 84 0.0018 22.3 5.1 51 25-89 79-132 (176)
184 PRK13431 F0F1 ATP synthase sub 41.4 75 0.0016 23.3 4.9 50 26-89 87-136 (180)
185 PF09383 NIL: NIL domain; Int 41.2 80 0.0017 19.0 6.0 40 29-69 16-55 (76)
186 TIGR01124 ilvA_2Cterm threonin 40.0 2.2E+02 0.0049 23.8 8.9 64 16-85 323-387 (499)
187 cd06404 PB1_aPKC PB1 domain is 39.5 40 0.00087 22.1 2.9 37 54-90 36-72 (83)
188 PRK07431 aspartate kinase; Pro 38.0 59 0.0013 27.4 4.4 35 16-50 346-383 (587)
189 PLN02912 oxidoreductase, 2OG-F 37.9 69 0.0015 25.4 4.6 55 20-93 44-101 (348)
190 cd01396 MeCP2_MBD MeCP2, MBD1, 36.4 49 0.0011 20.9 2.9 18 56-73 23-40 (77)
191 PRK09034 aspartate kinase; Rev 36.2 68 0.0015 26.3 4.4 38 16-53 383-423 (454)
192 PRK09436 thrA bifunctional asp 36.0 78 0.0017 28.2 5.0 39 15-53 312-353 (819)
193 TIGR03433 padR_acidobact trans 35.9 85 0.0018 20.2 4.1 48 28-76 38-85 (100)
194 PLN02515 naringenin,2-oxogluta 35.7 81 0.0018 25.2 4.7 55 20-93 40-99 (358)
195 PF02319 E2F_TDP: E2F/DP famil 34.6 30 0.00065 21.3 1.7 16 31-46 45-60 (71)
196 cd01423 MGS_CPS_I_III Methylgl 34.6 55 0.0012 21.3 3.0 28 20-48 4-31 (116)
197 PF02962 CHMI: 5-carboxymethyl 34.3 1.6E+02 0.0034 20.4 6.7 62 26-89 15-89 (124)
198 PRK14646 hypothetical protein; 34.2 1.7E+02 0.0037 20.7 8.8 60 30-89 8-68 (155)
199 COG2902 NAD-specific glutamate 33.8 69 0.0015 31.0 4.4 44 6-49 73-119 (1592)
200 PRK06291 aspartate kinase; Pro 33.8 78 0.0017 26.0 4.4 35 16-50 396-433 (465)
201 PLN02947 oxidoreductase 33.2 97 0.0021 24.9 4.8 57 18-93 67-126 (374)
202 PRK09181 aspartate kinase; Val 32.4 84 0.0018 26.3 4.4 47 15-65 326-375 (475)
203 PRK09181 aspartate kinase; Val 32.2 77 0.0017 26.5 4.1 35 16-50 400-436 (475)
204 COG2892 Uncharacterized protei 32.1 1.5E+02 0.0032 19.5 4.7 35 5-40 33-67 (82)
205 PLN02551 aspartokinase 32.1 86 0.0019 26.5 4.4 38 16-53 443-482 (521)
206 smart00391 MBD Methyl-CpG bind 30.4 63 0.0014 20.4 2.7 20 55-74 24-43 (77)
207 KOG2578 Transcription factor E 29.6 30 0.00065 28.3 1.3 17 28-44 203-219 (388)
208 PRK14639 hypothetical protein; 29.1 2E+02 0.0044 20.0 7.6 55 35-90 3-57 (140)
209 PRK13434 F0F1 ATP synthase sub 28.8 1.3E+02 0.0028 21.5 4.4 51 25-89 80-133 (184)
210 PRK09224 threonine dehydratase 27.8 3.6E+02 0.0078 22.5 9.4 64 16-84 326-390 (504)
211 PF01429 MBD: Methyl-CpG bindi 27.0 59 0.0013 20.2 2.1 18 57-74 29-46 (77)
212 cd01421 IMPCH Inosine monophos 26.8 1.4E+02 0.0031 22.2 4.4 28 18-48 2-29 (187)
213 PF02576 DUF150: Uncharacteris 26.6 2.1E+02 0.0046 19.5 6.4 53 35-89 2-55 (141)
214 PF03539 Spuma_A9PTase: Spumav 26.5 27 0.00059 25.6 0.5 36 37-72 21-59 (163)
215 PRK14634 hypothetical protein; 25.9 2.5E+02 0.0053 19.9 8.4 60 30-89 8-68 (155)
216 PRK09436 thrA bifunctional asp 25.7 1.2E+02 0.0027 27.0 4.5 35 16-50 394-431 (819)
217 PLN02550 threonine dehydratase 24.7 1.1E+02 0.0023 26.6 3.8 35 16-50 415-450 (591)
218 cd04910 ACT_AK-Ectoine_1 ACT d 24.0 1.8E+02 0.004 18.1 3.9 30 20-49 3-35 (71)
219 PLN03178 leucoanthocyanidin di 24.0 1.4E+02 0.0031 23.6 4.2 46 28-92 64-109 (360)
220 PLN02393 leucoanthocyanidin di 23.9 1.6E+02 0.0034 23.5 4.4 54 19-91 53-112 (362)
221 PRK14637 hypothetical protein; 23.5 2.8E+02 0.006 19.7 7.9 60 28-89 7-67 (151)
222 PF11293 DUF3094: Protein of u 22.9 1.1E+02 0.0023 18.7 2.6 27 69-97 2-28 (55)
223 PRK06557 L-ribulose-5-phosphat 22.9 76 0.0016 23.2 2.3 39 31-71 14-54 (221)
224 PRK09084 aspartate kinase III; 22.9 1.9E+02 0.0041 23.8 4.8 31 16-46 382-415 (448)
225 PF07700 HNOB: Heme NO binding 22.8 1.5E+02 0.0032 20.8 3.7 43 5-48 116-165 (171)
226 TIGR00657 asp_kinases aspartat 22.6 2E+02 0.0043 23.3 4.8 35 16-50 300-336 (441)
227 PRK09466 metL bifunctional asp 22.0 1.4E+02 0.0031 26.6 4.2 35 15-49 314-351 (810)
228 PRK08961 bifunctional aspartat 21.8 5.8E+02 0.013 22.8 8.9 35 15-49 319-356 (861)
229 cd03487 RT_Bac_retron_II RT_Ba 21.7 3.1E+02 0.0067 19.6 6.4 54 28-81 156-212 (214)
230 cd00580 CHMI 5-carboxymethyl-2 21.2 2.5E+02 0.0054 18.3 5.5 61 26-88 15-88 (113)
231 PF10003 DUF2244: Integral mem 20.9 1E+02 0.0023 21.2 2.6 20 68-87 121-140 (140)
232 PLN02904 oxidoreductase 20.8 2.3E+02 0.005 22.6 4.8 57 18-93 52-112 (357)
233 PRK14638 hypothetical protein; 20.7 3.1E+02 0.0068 19.3 7.8 56 33-89 12-68 (150)
234 PF14528 LAGLIDADG_3: LAGLIDAD 20.6 2E+02 0.0044 17.0 4.3 28 18-46 21-48 (77)
235 PRK10222 PTS system L-ascorbat 20.3 1.7E+02 0.0036 18.6 3.3 33 33-65 5-41 (85)
236 PTZ00273 oxidase reductase; Pr 20.3 1.7E+02 0.0038 22.5 3.9 47 28-93 22-68 (320)
237 COG3565 Predicted dioxygenase 20.0 1.1E+02 0.0024 21.8 2.5 21 1-21 94-115 (138)
No 1
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.97 E-value=1.8e-30 Score=167.23 Aligned_cols=73 Identities=25% Similarity=0.298 Sum_probs=68.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChHH-HHHHHHHHHHhcCCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKPL-QQVLANSLRYFLRRP 90 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~~-~~~L~~~L~~~L~~~ 90 (97)
+|+|||.|+|||||||+|+++|.++|++|++|||+|.||||+|+|||++ +|.||+++. ++.|+++|.++|.++
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999999999999999974 699999774 589999999999763
No 2
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.96 E-value=3.2e-29 Score=161.41 Aligned_cols=72 Identities=28% Similarity=0.437 Sum_probs=67.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe--cCCceeEEEEEEccCCCCCChH-HHHHHHHHHHHhcCCC
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFD--TEELLAKAKFHVSYKGEAIIKP-LQQVLANSLRYFLRRP 90 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~--T~Gera~DvFyVt~~g~~L~~~-~~~~L~~~L~~~L~~~ 90 (97)
|+|||.|+|||||||+|+++|.++|++||+|||+ |.||||+|+|||+.+|+||+++ +++.|+++|+++|..|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999999 9999999999996679899876 5689999999998765
No 3
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.96 E-value=3.6e-29 Score=160.00 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=62.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChH-HHHHHHHHHHH
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKP-LQQVLANSLRY 85 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~-~~~~L~~~L~~ 85 (97)
+|+|||.|+|||||||+|+++|.++|++||+|||+|+||||+|+|||++ +|+||+++ .+++|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999974 69999865 55888888753
No 4
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=6.5e-27 Score=200.84 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=82.0
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L 79 (97)
.|.+||+|.|+|+ ++++|+|||.|.|||||||+|+++|.++|++||+|||+|+||||+|+|||+ .+|+||+++++++|
T Consensus 766 ~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l 845 (854)
T PRK01759 766 HFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKAL 845 (854)
T ss_pred CCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHH
Confidence 3688999999999 999999999999999999999999999999999999999999999999997 46999998877999
Q ss_pred HHHHHHhcC
Q 046242 80 ANSLRYFLR 88 (97)
Q Consensus 80 ~~~L~~~L~ 88 (97)
+++|.++|+
T Consensus 846 ~~~L~~~l~ 854 (854)
T PRK01759 846 KSRLLSNLS 854 (854)
T ss_pred HHHHHHHhC
Confidence 999999874
No 5
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.2e-26 Score=198.11 Aligned_cols=88 Identities=24% Similarity=0.319 Sum_probs=82.9
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L 79 (97)
.|.+||+|.|+|+ ++++|+|||.|.|||||||+|+++|.++|++|++|||+|+|+||+|+|||+ .+|.|++++++++|
T Consensus 791 ~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l 870 (884)
T PRK05007 791 HFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQEL 870 (884)
T ss_pred CCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHH
Confidence 3788999999999 999999999999999999999999999999999999999999999999997 56999997778999
Q ss_pred HHHHHHhcCC
Q 046242 80 ANSLRYFLRR 89 (97)
Q Consensus 80 ~~~L~~~L~~ 89 (97)
+++|.++|+.
T Consensus 871 ~~~L~~~l~~ 880 (884)
T PRK05007 871 RQRLTEALNP 880 (884)
T ss_pred HHHHHHHHhh
Confidence 9999999965
No 6
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.5e-24 Score=184.12 Aligned_cols=88 Identities=26% Similarity=0.371 Sum_probs=82.7
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChHHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKPLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~~~~~L 79 (97)
-|+|||+|.|.++ ++.+|+|||+|.||||||++|+++|.+++++||+|||+|+||||+|+|||++ .|++++++.++.+
T Consensus 774 ~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~~~q~l 853 (867)
T COG2844 774 HFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAELRQSL 853 (867)
T ss_pred eeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHHHHHHH
Confidence 3789999999999 8889999999999999999999999999999999999999999999999984 6999999888899
Q ss_pred HHHHHHhcCC
Q 046242 80 ANSLRYFLRR 89 (97)
Q Consensus 80 ~~~L~~~L~~ 89 (97)
.++|.+++..
T Consensus 854 ~~~ll~al~~ 863 (867)
T COG2844 854 LQRLLEALLP 863 (867)
T ss_pred HHHHHHHhcc
Confidence 9999888865
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.89 E-value=9.5e-23 Score=175.80 Aligned_cols=88 Identities=20% Similarity=0.367 Sum_probs=82.4
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L 79 (97)
.|++||+|.|+++ +.++|+|+|.|.|||||||+|+++|+++|++|++|||+|.|++|+|+|||+ .+|.+++++++++|
T Consensus 779 ~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l 858 (869)
T PRK04374 779 HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQAL 858 (869)
T ss_pred CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHH
Confidence 4789999999998 889999999999999999999999999999999999999999999999997 56899988777999
Q ss_pred HHHHHHhcCC
Q 046242 80 ANSLRYFLRR 89 (97)
Q Consensus 80 ~~~L~~~L~~ 89 (97)
+++|.++|+.
T Consensus 859 ~~~L~~~l~~ 868 (869)
T PRK04374 859 RDALCACLDP 868 (869)
T ss_pred HHHHHHHhcc
Confidence 9999999864
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.87 E-value=5.7e-22 Score=169.60 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=81.1
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChHHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKPLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~~~~~L 79 (97)
.|.+||+|.|+|+ ++++|+|+|.|.|||||||+|+++|.++|++|++|||+|.|++++|+|||+. .|.|+++++++.|
T Consensus 762 ~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l 841 (850)
T TIGR01693 762 HFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRL 841 (850)
T ss_pred CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHH
Confidence 3678999999999 8999999999999999999999999999999999999999999999999984 6999999778999
Q ss_pred HHHHHHhc
Q 046242 80 ANSLRYFL 87 (97)
Q Consensus 80 ~~~L~~~L 87 (97)
+++|.++|
T Consensus 842 ~~~L~~~l 849 (850)
T TIGR01693 842 LEVLAASV 849 (850)
T ss_pred HHHHHHHh
Confidence 99999876
No 9
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.87 E-value=1.9e-21 Score=168.03 Aligned_cols=90 Identities=20% Similarity=0.347 Sum_probs=82.9
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChH-HHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKP-LQQV 78 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~-~~~~ 78 (97)
.|++||+|.|+++ +.++|+|+|.|.||||||++|+++|.++|++|++|||+|.|++|.|+|||+ .+|.+++++ .++.
T Consensus 797 ~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~ 876 (895)
T PRK00275 797 HFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSR 876 (895)
T ss_pred CCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHH
Confidence 3678999999998 888999999999999999999999999999999999999999999999997 469999875 5688
Q ss_pred HHHHHHHhcCCCC
Q 046242 79 LANSLRYFLRRPT 91 (97)
Q Consensus 79 L~~~L~~~L~~~~ 91 (97)
|+++|.++|.++.
T Consensus 877 l~~~L~~~L~~~~ 889 (895)
T PRK00275 877 LQDAICEQLDARN 889 (895)
T ss_pred HHHHHHHHHhccc
Confidence 9999999997754
No 10
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.86 E-value=3.8e-21 Score=121.45 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=64.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cC-CCCCChH-HHHHHHHHHHHhcC
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YK-GEAIIKP-LQQVLANSLRYFLR 88 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~-g~~L~~~-~~~~L~~~L~~~L~ 88 (97)
|+|||.++||||||++|+++|.++|++|++|||.|.|+++.|+|||+ .+ |.++.++ .++.++++|.++|+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999999997 45 8888765 45899999998876
No 11
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.85 E-value=1.4e-20 Score=119.83 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=61.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec-CCceeEEEEEEcc-CCCCCChHHHHHHHHHHHHhcCC
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDT-EELLAKAKFHVSY-KGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T-~Gera~DvFyVt~-~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
++||.|+||||||++|+++|.++|++|++|||.| .|++|.|+|||++ +|...+++.+++++++|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999995 9999999999974 45533345668899999999875
No 12
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.84 E-value=2.4e-20 Score=161.26 Aligned_cols=93 Identities=25% Similarity=0.331 Sum_probs=84.5
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChH-HHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKP-LQQV 78 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~-~~~~ 78 (97)
.|.+||+|.|+|+ +.++|+|+|.|.||||||++|+++|.++|++|++|||+|.|++|+|+|||+ .+|.++.++ .++.
T Consensus 826 ~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~ 905 (931)
T PRK05092 826 AFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAA 905 (931)
T ss_pred CCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHH
Confidence 3678999999998 888999999999999999999999999999999999999999999999997 479999876 5688
Q ss_pred HHHHHHHhcCCCCccc
Q 046242 79 LANSLRYFLRRPTTEE 94 (97)
Q Consensus 79 L~~~L~~~L~~~~~~~ 94 (97)
|+++|.++|.++.-|+
T Consensus 906 l~~~L~~~L~~~~~~~ 921 (931)
T PRK05092 906 IRRALLAALAEGEAEA 921 (931)
T ss_pred HHHHHHHHhcCccccc
Confidence 9999999998755443
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.84 E-value=1.9e-20 Score=159.69 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=76.1
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L 79 (97)
.|++||+|.|+++ +.++|+|+|.|.||||||++|+++|.++|++|++|||+|.|++|+|+|||+ .+|.+++++ ++.|
T Consensus 690 ~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~-~~~l 768 (774)
T PRK03381 690 RPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA-RAAV 768 (774)
T ss_pred cCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH-HHHH
Confidence 3678999999988 888999999999999999999999999999999999999999999999997 569999987 7888
Q ss_pred HHHHH
Q 046242 80 ANSLR 84 (97)
Q Consensus 80 ~~~L~ 84 (97)
+++|.
T Consensus 769 ~~~L~ 773 (774)
T PRK03381 769 EQAVL 773 (774)
T ss_pred HHHhh
Confidence 88875
No 14
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=4.5e-20 Score=115.66 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=61.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC-CceeEEEEEEc-cCCCCCChH-HHHHHHHHHHHhc
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE-ELLAKAKFHVS-YKGEAIIKP-LQQVLANSLRYFL 87 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~-Gera~DvFyVt-~~g~~L~~~-~~~~L~~~L~~~L 87 (97)
+.|+|.++||||||++|+++|..+|++|++|||.|. +++|.|+|||+ .+|.++.++ +++.|++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999888 69999999997 468888754 5588999988765
No 15
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.82 E-value=8.8e-20 Score=157.13 Aligned_cols=85 Identities=24% Similarity=0.349 Sum_probs=76.0
Q ss_pred CCcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCCh-HHHHHH
Q 046242 2 DVDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIK-PLQQVL 79 (97)
Q Consensus 2 ~~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~-~~~~~L 79 (97)
.|.+||+|.|+++ +.++|+|+|.|+|||||||+|+++|+++|++|++|||+|.|++|+|+|||+ +.++.+ ++++.|
T Consensus 769 ~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~--~~~~~~~~~~~~l 846 (856)
T PRK03059 769 HFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID--GSGLSDNRLQIQL 846 (856)
T ss_pred CCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc--CCCCCCHHHHHHH
Confidence 4788999999988 888999999999999999999999999999999999999999999999994 333444 456899
Q ss_pred HHHHHHhcC
Q 046242 80 ANSLRYFLR 88 (97)
Q Consensus 80 ~~~L~~~L~ 88 (97)
+++|.++|+
T Consensus 847 ~~~L~~~L~ 855 (856)
T PRK03059 847 ETELLDALA 855 (856)
T ss_pred HHHHHHHhc
Confidence 999998875
No 16
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.70 E-value=2e-16 Score=136.39 Aligned_cols=89 Identities=12% Similarity=0.178 Sum_probs=80.1
Q ss_pred CcccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec-CCceeEEEEEEc-cCCCCCChHHHHHH
Q 046242 3 VDIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT-EELLAKAKFHVS-YKGEAIIKPLQQVL 79 (97)
Q Consensus 3 ~~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T-~Gera~DvFyVt-~~g~~L~~~~~~~L 79 (97)
+..+|.|.++++ +.++|.|+|.++||||||++|+.+|..+|++|++|+|.| .|++|.|+|||+ .+|.+++++..+.|
T Consensus 661 ~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l 740 (854)
T PRK01759 661 FRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQL 740 (854)
T ss_pred cCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHH
Confidence 456889999988 888999999999999999999999999999999999977 999999999997 56999976566889
Q ss_pred HHHHHHhcCCCC
Q 046242 80 ANSLRYFLRRPT 91 (97)
Q Consensus 80 ~~~L~~~L~~~~ 91 (97)
+++|.++|+...
T Consensus 741 ~~~L~~aL~~~~ 752 (854)
T PRK01759 741 EQALTKALNTNK 752 (854)
T ss_pred HHHHHHHHcCCC
Confidence 999999998754
No 17
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=9.7e-16 Score=96.09 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=55.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVLANSL 83 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L 83 (97)
|-++|.++||||||++|+.+|.++|++|++|+|.|.++++.|+|+|. .+|.+++++..++++++|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999996 468887443445565554
No 18
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=1.7e-15 Score=92.34 Aligned_cols=69 Identities=28% Similarity=0.415 Sum_probs=61.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHHHHHHHHhc
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVLANSLRYFL 87 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L~~~L 87 (97)
|++.|.+.||||+|++|+++|.++|++|.+|++.|.|+.+.|+|++. .+|.+.+.+..+.|+++|.++|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999999999999999999999997 4677755555688999887764
No 19
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.66 E-value=1.1e-15 Score=131.12 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=76.7
Q ss_pred cceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEc-cCCCCCChHH-HHHHHH
Q 046242 6 ATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVS-YKGEAIIKPL-QQVLAN 81 (97)
Q Consensus 6 ~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt-~~g~~L~~~~-~~~L~~ 81 (97)
.|.|.+++. +.+.|.|+|.+.||||||++|+.+|..+|++|++|+|. |.|++|.|+|||+ .+|.++++++ .+.+++
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~ 734 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQ 734 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHH
Confidence 467888877 77899999999999999999999999999999999998 9999999999997 4699998764 688999
Q ss_pred HHHHhcCCC
Q 046242 82 SLRYFLRRP 90 (97)
Q Consensus 82 ~L~~~L~~~ 90 (97)
.|.++|+..
T Consensus 735 ~L~~~L~~~ 743 (850)
T TIGR01693 735 GLVDVLAGL 743 (850)
T ss_pred HHHHHHcCC
Confidence 999999774
No 20
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.65 E-value=1.4e-15 Score=131.62 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=79.1
Q ss_pred cccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCc-eeEEEEEEc-cCCCCCChHHHHHHH
Q 046242 4 DIATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEEL-LAKAKFHVS-YKGEAIIKPLQQVLA 80 (97)
Q Consensus 4 ~v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ge-ra~DvFyVt-~~g~~L~~~~~~~L~ 80 (97)
..+|.|.++++ +.++|.|+|.++||||||++|+.+|..+|++|++|+|.|.|+ +|.|+|||+ .+|.+++++..+.|+
T Consensus 686 ~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~ 765 (884)
T PRK05007 686 LDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIR 765 (884)
T ss_pred CCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHH
Confidence 35788999988 888999999999999999999999999999999999999987 999999997 468998765668899
Q ss_pred HHHHHhcCCCC
Q 046242 81 NSLRYFLRRPT 91 (97)
Q Consensus 81 ~~L~~~L~~~~ 91 (97)
++|.++|.+..
T Consensus 766 ~~L~~aL~~~~ 776 (884)
T PRK05007 766 KALEQALTQSS 776 (884)
T ss_pred HHHHHHHcCCC
Confidence 99999997753
No 21
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.48 E-value=8.2e-13 Score=79.61 Aligned_cols=69 Identities=25% Similarity=0.365 Sum_probs=59.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHHHHHHHHhc
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVLANSLRYFL 87 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L~~~L 87 (97)
+.|.|.+.||||+|++|+++|.++|++|.++++.|.+++..++|+|. .+|.+.++++++.|+++|...+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 46889999999999999999999999999999999988999999996 4566655556678888887653
No 22
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.40 E-value=3.4e-12 Score=110.97 Aligned_cols=85 Identities=19% Similarity=0.175 Sum_probs=74.2
Q ss_pred ccceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec-CCceeEEEEEEc-cCCCCCChH-HHHHHH
Q 046242 5 IATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT-EELLAKAKFHVS-YKGEAIIKP-LQQVLA 80 (97)
Q Consensus 5 v~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T-~Gera~DvFyVt-~~g~~L~~~-~~~~L~ 80 (97)
-|+.|.+.++ ..+.|.|.|.+.|||||+++|+.+|..+|++|++|+|.| .|+.+.|+|||+ .+|.+..++ ..+.|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 4577888877 778999999999999999999999999999999999977 789999999997 468887654 558899
Q ss_pred HHHHHhcCC
Q 046242 81 NSLRYFLRR 89 (97)
Q Consensus 81 ~~L~~~L~~ 89 (97)
+.|..++.+
T Consensus 798 ~~L~~~l~~ 806 (931)
T PRK05092 798 KAIEDALSG 806 (931)
T ss_pred HHHHHHHcC
Confidence 999888854
No 23
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=6.8e-12 Score=79.46 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=51.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEcc-CCCCCChHHHHHHHHHHHHhc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSY-KGEAIIKPLQQVLANSLRYFL 87 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~-~g~~L~~~~~~~L~~~L~~~L 87 (97)
-|-|.++|||||+++|+.+|..+|++|+.|+|- |-...+-|+|+|.+ +|.- ...|.++|.++|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~-----~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE-----TAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc-----hHHHHHHHHHhh
Confidence 567999999999999999999999999999996 55789999999974 4432 245666666655
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.23 E-value=1.3e-10 Score=101.23 Aligned_cols=85 Identities=16% Similarity=0.283 Sum_probs=70.8
Q ss_pred ceEEEecC-C---CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEEEEc-cCCCCCC-hH-HHHH
Q 046242 7 THISIYDD-G---PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKFHVS-YKGEAII-KP-LQQV 78 (97)
Q Consensus 7 ~~V~~~~~-~---~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvFyVt-~~g~~L~-~~-~~~~ 78 (97)
|-|.+.+. . .+.|.|-|.+.|||||+++|+.+|..+|++|+.|+| +|-+..|-|+|+|. .+|.++. ++ ..+.
T Consensus 689 ~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~ 768 (895)
T PRK00275 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQ 768 (895)
T ss_pred CeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHH
Confidence 44556554 3 479999999999999999999999999999999999 66678999999997 4688865 33 4588
Q ss_pred HHHHHHHhcCCCC
Q 046242 79 LANSLRYFLRRPT 91 (97)
Q Consensus 79 L~~~L~~~L~~~~ 91 (97)
|+++|..+|....
T Consensus 769 i~~~L~~~L~~~~ 781 (895)
T PRK00275 769 IREGLTEALRNPD 781 (895)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999988754
No 25
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.19 E-value=2.1e-10 Score=98.48 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=67.6
Q ss_pred cceEEEecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChHHHHHHHHHHH
Q 046242 6 ATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKPLQQVLANSLR 84 (97)
Q Consensus 6 ~~~V~~~~~~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~~~~~L~~~L~ 84 (97)
+|.|.+.++..+.|.|.|.+.|||||+++|+.+|..+|+||++|+|.|.+..+-|+|+|+. .|.+.. .+.++++|.
T Consensus 587 ~~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~---~~~l~~~L~ 663 (774)
T PRK03381 587 GVHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPD---AALLRQDLR 663 (774)
T ss_pred CCEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcch---HHHHHHHHH
Confidence 3556665434678999999999999999999999999999999999999999999999974 566533 356777777
Q ss_pred HhcCCC
Q 046242 85 YFLRRP 90 (97)
Q Consensus 85 ~~L~~~ 90 (97)
++|.+.
T Consensus 664 ~~L~~~ 669 (774)
T PRK03381 664 RALDGD 669 (774)
T ss_pred HHHcCC
Confidence 777763
No 26
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.15 E-value=5.4e-10 Score=96.95 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=70.4
Q ss_pred cceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEEEEcc-CCCCCCh-HHHHHHHH
Q 046242 6 ATHISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKFHVSY-KGEAIIK-PLQQVLAN 81 (97)
Q Consensus 6 ~~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvFyVt~-~g~~L~~-~~~~~L~~ 81 (97)
.|.|.+.+. ..+.|.|-|.+.|||||+++|+.+|..+|+||+.|+| +|-...|-|+|+|.+ +|. ..+ +..+.+++
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~ 743 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEH 743 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHH
Confidence 344556666 6679999999999999999999999999999999999 667899999999974 455 443 35588999
Q ss_pred HHHHhcCCCC
Q 046242 82 SLRYFLRRPT 91 (97)
Q Consensus 82 ~L~~~L~~~~ 91 (97)
.|.++|.+..
T Consensus 744 ~l~~~l~~~~ 753 (856)
T PRK03059 744 ELAERLAEQA 753 (856)
T ss_pred HHHHHHcCCC
Confidence 9999997743
No 27
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.04 E-value=2.7e-09 Score=92.93 Aligned_cols=74 Identities=20% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec-CCceeEEEEEEcc-CCCCCChHHHHHHHHHHHHhcCCC
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT-EELLAKAKFHVSY-KGEAIIKPLQQVLANSLRYFLRRP 90 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T-~Gera~DvFyVt~-~g~~L~~~~~~~L~~~L~~~L~~~ 90 (97)
..+.|.+-|.+.|||||+++|+.+|..+|+||++|+|.| -...|-|+|+|.+ +|.+ .+..+.++++|.++|++.
T Consensus 687 ~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 687 DNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCC
Confidence 567999999999999999999999999999999999976 7899999999974 4654 344566999999988874
No 28
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.99 E-value=1.1e-08 Score=60.74 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=37.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCce
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELL 57 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ger 57 (97)
|.+.|..+||||+|++|+++|.++|+||.++.+.+.+..
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 578999999999999999999999999999999999985
No 29
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.78 E-value=1e-07 Score=60.08 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=51.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHh
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYF 86 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~ 86 (97)
+-+|.+.++||||+++.|++++.++|.||...+.+++|++..=++.|+.. +...+.|+++|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999988888633 33446677776654
No 30
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=98.74 E-value=1.7e-08 Score=86.46 Aligned_cols=68 Identities=16% Similarity=0.061 Sum_probs=55.1
Q ss_pred cceEEEecCCCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 6 ATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 6 ~~~V~~~~~~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
||++.+.. +++||.|.||||||++|+++|. +|.+|+++|.|-.+.|+||+..+ ..+..+..++..
T Consensus 624 ~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~~------~~r~~~~~~~~~ 688 (693)
T PRK00227 624 ITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKPG------FDRATVERDVTR 688 (693)
T ss_pred CCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecCc------ccHHHHHHHHHH
Confidence 45565553 8999999999999999999999 89999999999999999999721 124566666666
Q ss_pred hcC
Q 046242 86 FLR 88 (97)
Q Consensus 86 ~L~ 88 (97)
+|.
T Consensus 689 ~~~ 691 (693)
T PRK00227 689 VLA 691 (693)
T ss_pred HHh
Confidence 654
No 31
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.6e-07 Score=81.73 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=71.9
Q ss_pred ceEEEecC-CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEEEEc-cCCCCCChHHHHHHHHHH
Q 046242 7 THISIYDD-GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKFHVS-YKGEAIIKPLQQVLANSL 83 (97)
Q Consensus 7 ~~V~~~~~-~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L 83 (97)
|-|.+... ..+-|-|-|.++|+|.|++.|+..+...|++|+.|+| +|.-.++-|+|+|. .+|.++.++.+..+...|
T Consensus 672 ~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l 751 (867)
T COG2844 672 PLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGEL 751 (867)
T ss_pred cceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHH
Confidence 34454544 5578999999999999999999999999999999999 66678899999997 579999977778888888
Q ss_pred HHhcCCCC
Q 046242 84 RYFLRRPT 91 (97)
Q Consensus 84 ~~~L~~~~ 91 (97)
.++|.++.
T Consensus 752 ~~~l~s~~ 759 (867)
T COG2844 752 IEALLSGK 759 (867)
T ss_pred HHHHhcCC
Confidence 88887654
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.52 E-value=3.6e-07 Score=57.15 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=40.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
++.|.+.||||++++|+++|+++|+||...+-++++.+..=.|.++
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~ 46 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQ 46 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEE
Confidence 4789999999999999999999999999999999987766666665
No 33
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=7.1e-07 Score=55.35 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=37.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
+|.+.++||||++++|++.|+++|++|...+-.+. .....|++.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~--~~~~~f~~~ 44 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD--PDSGRFFMR 44 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec--CCCCeEEEE
Confidence 57899999999999999999999999999988762 233458885
No 34
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.34 E-value=1.8e-06 Score=53.79 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=39.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCce--eEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELL--AKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ger--a~DvFyVt 65 (97)
++.|.++||||++++|++.|.++|++|...+-.|.+.. ....|+..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~ 48 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQ 48 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEE
Confidence 47899999999999999999999999999999998732 33567664
No 35
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.28 E-value=4.4e-06 Score=52.29 Aligned_cols=48 Identities=31% Similarity=0.434 Sum_probs=38.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC--CceeEEEEEEc
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE--ELLAKAKFHVS 65 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~--Gera~DvFyVt 65 (97)
.+-|.|.+.||||+|++|++++.++|++|.+..+.+. +..+.=.|-|.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~ 55 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE 55 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE
Confidence 5779999999999999999999999999999999996 45555555553
No 36
>PRK00194 hypothetical protein; Validated
Probab=98.25 E-value=1.1e-05 Score=51.52 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=38.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEE
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyV 64 (97)
+.++.|.++||||++++|++.|+++|++|....=.+.++ .||+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~----~~~~ 45 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDG----YFTM 45 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCC----eeEE
Confidence 578999999999999999999999999999988888664 5666
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=9.4e-06 Score=51.97 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=36.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCce
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELL 57 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ger 57 (97)
.++.+.++||||++++|++.|.++|++|....-.|.+.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~ 40 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGY 40 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCc
Confidence 478999999999999999999999999999999987654
No 38
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.19 E-value=1.7e-05 Score=48.44 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=36.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC-ceeEEEEEE
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE-LLAKAKFHV 64 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G-era~DvFyV 64 (97)
|.|.+.||||+|++|++++++.|.+|.+....+.. ..+.-.|-+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~v 46 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITV 46 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEE
Confidence 68999999999999999999999999988876653 455555555
No 39
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.14 E-value=4.1e-06 Score=52.89 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=36.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCcee
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLA 58 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera 58 (97)
-+|.+.++||||+.++|++.|.++|.||...+-.+.+.+-
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F 41 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEF 41 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEE
Confidence 4788999999999999999999999999999999966643
No 40
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.03 E-value=6.5e-05 Score=45.01 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
.|.|.+.||||+|++|+++|.++|++|.+....+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~ 37 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEAD 37 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccC
Confidence 478999999999999999999999999999876654
No 41
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=4.3e-05 Score=48.43 Aligned_cols=67 Identities=24% Similarity=0.296 Sum_probs=54.7
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHh
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYF 86 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~ 86 (97)
|+|.|.++|..||=.+|++++.+.|++|..+-++|-|...-=+|.|.....++.- .=..|+++|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~-rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKV-RWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcc-cHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999643322221 225677777653
No 42
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.92 E-value=4.7e-05 Score=56.25 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=46.4
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
.++-+|.+.+.||||+.+.|++++.++|.||...+-+.+|..-.=++.|+
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 36889999999999999999999999999999999999999887777784
No 43
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.91 E-value=9.6e-05 Score=43.60 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=28.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
+.|..+||||+|++|+.+|.++|++|.+.....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~ 33 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDR 33 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEe
Confidence 467889999999999999999999998776544
No 44
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.90 E-value=0.00015 Score=42.63 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=36.5
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC-CceeEEEEEE
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE-ELLAKAKFHV 64 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~-Gera~DvFyV 64 (97)
.+.+.+.|+||+|++|+.+|.++|++|.+....+. ++.-..+++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 47 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIV 47 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEE
Confidence 57889999999999999999999999999988775 4443444433
No 45
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.85 E-value=0.00027 Score=44.29 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=44.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC-ceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE-LLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G-era~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
+.+.+...|+||-|++|..+|.++|++|.+-.-...+ ...+=+|||+-+|. .+++..+.+.+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC-CCCHHHHHHHHHHHH
Confidence 5677888999999999999999999999776554443 23444788865554 333333333344443
No 46
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.82 E-value=3.8e-05 Score=47.67 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=32.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE 54 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~ 54 (97)
-|+|.+.||+|+|++|+.++++.|++|.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 37899999999999999999999999999999775
No 47
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.76 E-value=0.00012 Score=42.73 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=37.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC-ceeEEEEEEc
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE-LLAKAKFHVS 65 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G-era~DvFyVt 65 (97)
+.|...|+||.|++|+++|.++|+||.+..+...+ +++.=.|-+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 46788999999999999999999999999886655 6666666553
No 48
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=97.73 E-value=5.4e-05 Score=55.93 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=42.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCc--eeEEEEEEc
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEEL--LAKAKFHVS 65 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ge--ra~DvFyVt 65 (97)
..++|.+.||||++++|+++|+++|+||..=+=.|.+. .-.+.|...
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~ 144 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQ 144 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEE
Confidence 68999999999999999999999999999988888884 778888875
No 49
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=97.73 E-value=0.00017 Score=62.14 Aligned_cols=65 Identities=17% Similarity=0.113 Sum_probs=53.0
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChHH-HHHHHHHHH
Q 046242 19 SLLLVET-ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKPL-QQVLANSLR 84 (97)
Q Consensus 19 T~ieV~a-~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~~-~~~L~~~L~ 84 (97)
..+.|.+ +|+||+|.+++.++.-++++|++|++.+ ++.+...|-|.+ .|.+..+.. ++.++.++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 5677888 9999999999999999999999999999 888889999975 588766542 344444443
No 50
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.71 E-value=0.00018 Score=42.04 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=35.9
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC--ceeEEEEEE
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE--LLAKAKFHV 64 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G--era~DvFyV 64 (97)
+.|.+.|+||+|++|+++|.++|++|.+......+ +.+.=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987765 343333444
No 51
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.70 E-value=0.00023 Score=41.90 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=31.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
++.|..+||||-|++++.+|.++|++|.+......+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 467889999999999999999999999887764443
No 52
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.62 E-value=0.00015 Score=43.92 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=37.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
.+.|...|+||-|++|+.+|.+.|+||.+.-+..-+++ -++-+.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 46788999999999999999999999999988776663 555553
No 53
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.61 E-value=0.00077 Score=39.54 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
+.+.+.||||.|++|++.|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 578999999999999999999999999888765
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.57 E-value=0.00093 Score=40.57 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=35.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC-ceeEEEEEE
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE-LLAKAKFHV 64 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G-era~DvFyV 64 (97)
.+.|.+.||||+|++|.++++++|++|.+..-.+.. ..+.=.|-+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v 47 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISI 47 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEE
Confidence 378999999999999999999999999988765532 333334444
No 55
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.57 E-value=0.00065 Score=48.97 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=43.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHh
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYF 86 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~ 86 (97)
.+|.|...|+||.|++|+.+|++.|+||.+--+..-++.-.--+.+.-+| ++...+.|.+.|.+.
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kl 66 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKL 66 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999876654442212223232233 233445666666543
No 56
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.56 E-value=0.00094 Score=51.85 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=40.5
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec--CCceeEEEEEEc
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT--EELLAKAKFHVS 65 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T--~Gera~DvFyVt 65 (97)
.++.++.|.+.||||+.++|+++|+++|+||...+-++ .+. .|+..
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~ 51 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMR 51 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEE
Confidence 35678999999999999999999999999999999988 665 47774
No 57
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00089 Score=40.30 Aligned_cols=46 Identities=15% Similarity=0.284 Sum_probs=35.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC--CceeEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE--ELLAKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~--Gera~DvFyVt 65 (97)
.+.|..+|+||-|++|++.|.++|++|.+...... +....-.|.+.
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 46788999999999999999999999997776554 22333355554
No 58
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.54 E-value=0.00015 Score=48.35 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=31.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEE
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
...+|.|...||||+-+.|+++|+++|+||..-.
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldis 35 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDIS 35 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHH
Confidence 3679999999999999999999999999998743
No 59
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.50 E-value=0.00087 Score=35.83 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=31.5
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
|.+.+.|+||+|++|..+|.+++++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999886654
No 60
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00098 Score=39.29 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=32.0
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
.+.+...|+||.|++|++.|.+++++|.+....+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467899999999999999999999999988876653
No 61
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.41 E-value=0.00048 Score=53.55 Aligned_cols=48 Identities=8% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
.+..++.|.++||||+.+.|++.|+++|+||....=. ++...+.|+..
T Consensus 5 m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~--~~~~~~~F~m~ 52 (286)
T PRK13011 5 PDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF--DDRLSGRFFMR 52 (286)
T ss_pred CceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee--ecCCCCeEEEE
Confidence 3457899999999999999999999999999876544 44567788874
No 62
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.41 E-value=0.0014 Score=47.42 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=31.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
.+|.|...|+||.|++|+..|++.|+||.+--+.-
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~ 37 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGP 37 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeee
Confidence 57899999999999999999999999998876543
No 63
>PRK08577 hypothetical protein; Provisional
Probab=97.37 E-value=0.0048 Score=42.62 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=36.3
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
..+...|.|.+.||||+|++|+++|.+++++|.+....+..
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 44588999999999999999999999999999988876653
No 64
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.37 E-value=0.0022 Score=36.05 Aligned_cols=35 Identities=34% Similarity=0.572 Sum_probs=32.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
|.|...|+||.|.+|.+.|.+++++|.+..+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46889999999999999999999999999987766
No 65
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.31 E-value=0.0016 Score=38.99 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=31.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec--CCceeE
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDT--EELLAK 59 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T--~Gera~ 59 (97)
+-+...|+||.|++|+++|.++|++|.+-.... .++++.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~ 42 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEAL 42 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEE
Confidence 346889999999999999999999998887644 344544
No 66
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.21 E-value=0.0036 Score=48.63 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=36.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
+|.|.++||||+.+.|++.|.++|+||....=.+. .-.+.|+..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~--~~~~~F~mr 45 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD--PETGRFFMR 45 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc--CCCCeEEEE
Confidence 68999999999999999999999999999775543 334577764
No 67
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.21 E-value=0.00069 Score=40.45 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCce
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELL 57 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ger 57 (97)
+-+.+.||||+|++|+.+|.++|++|.+....+-+..
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~ 38 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEI 38 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCE
Confidence 3458899999999999999999999988766554433
No 68
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.21 E-value=0.0037 Score=40.28 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=43.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
..|.+...|+||.|++|+.+|+..|+||.+=... |......-+..+.. |. +...+.|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~~---~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-CT---ENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-CC---HHHHHHHHHHHhC
Confidence 4689999999999999999999999999987765 44444444444422 21 2233455555544
No 69
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.17 E-value=0.00058 Score=50.06 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
..+.|.+.||||+|++|+..|++.|+||.+=....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 57999999999999999999999999999877743
No 70
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.14 E-value=0.00078 Score=45.37 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=33.5
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD 52 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~ 52 (97)
...+.+|.+...|+||.|++|+..|++.|+||.+=-..
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg 42 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL 42 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence 44567789999999999999999999999999987664
No 71
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.12 E-value=0.0044 Score=37.24 Aligned_cols=33 Identities=39% Similarity=0.494 Sum_probs=29.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEF 51 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI 51 (97)
+.+.+.-+|+||.|.++++.|.++|++|++...
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~ 34 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLV 34 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEE
Confidence 457788999999999999999999999997754
No 72
>PRK07334 threonine dehydratase; Provisional
Probab=97.08 E-value=0.0035 Score=50.19 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=34.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE 54 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~ 54 (97)
.+-|+|.+.||||+|++|++++++.+++|.+....+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4789999999999999999999999999999988764
No 73
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.04 E-value=0.0054 Score=47.90 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=37.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEE
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV 64 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyV 64 (97)
++.+|.|.++||||+.|.|++.|.++|+||....=.+ +...+.||.
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~--d~~~~~ffm 53 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFD--DDESGRFFM 53 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEeccccc--ccccCcEEE
Confidence 3569999999999999999999999999999887652 233334554
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0029 Score=38.67 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=29.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTE 54 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~ 54 (97)
+.|.-+||||-|++++..|.++|.+|.+-...-.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678899999999999999999999987765544
No 75
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.91 E-value=0.002 Score=41.40 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
...|.+...|+||.|++|+.+|+..|++|.+=...-
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~ 38 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQ 38 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeee
Confidence 357899999999999999999999999999977643
No 76
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.86 E-value=0.0016 Score=42.84 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=43.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
.+|.+...|+||.|++|+..|++.|+||.+=.++ |.-+.+.-.=.+...|.. ...+.+.+.|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~---~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD---TSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH---HHHHHHHHHHhC
Confidence 4688999999999999999999999999998774 333444443333222322 233555555553
No 77
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.86 E-value=0.024 Score=37.21 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=49.1
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec-CCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT-EELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T-~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
.+..|-|-+...|+||-|+++-..|.++|+++.+=.=-- -+..-+=.|||.-+|+ . ++..+.+.+.|...|.-
T Consensus 11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~-~-~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK-S-APALDPIIKSLRNDIGA 84 (90)
T ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC-C-CHHHHHHHHHHHHHhCC
Confidence 444677778889999999999999999999987543321 2233445799986665 3 33334444556665543
No 78
>PRK04435 hypothetical protein; Provisional
Probab=96.70 E-value=0.012 Score=41.51 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=40.5
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC-CceeEEEEEE
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE-ELLAKAKFHV 64 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~-Gera~DvFyV 64 (97)
..+...|.+...||||+|++|.++++++|+||..-.-+.- +..+.=.|-|
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tV 116 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISI 116 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEE
Confidence 6778999999999999999999999999999988765443 3444445555
No 79
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0035 Score=46.34 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=45.5
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
++-+|...+.|||||.-.|++...++|-++..+|++.+|+...=+-.|+
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis 52 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS 52 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe
Confidence 4689999999999999999999999999999999999999988777774
No 80
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.56 E-value=0.038 Score=33.83 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=40.5
Q ss_pred EEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 23 VETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 23 V~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
+.-.|+||-|++|-.+|+++|+||.+-.=. ..+...+=.|||+-+|.. .+...+.+.+.|.+
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCC-CCHHHHHHHHHHHH
Confidence 445799999999999999999998865322 224455667889755642 22232344444443
No 81
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=96.52 E-value=0.0019 Score=47.65 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=35.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC--ceeEEEEEEc
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE--LLAKAKFHVS 65 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G--era~DvFyVt 65 (97)
-..++|.+.||||++.++++.|..+|++|.+=-=.|.- .--.-.|.++
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~ 141 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQ 141 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehh
Confidence 45789999999999999999999999998764333322 1222356664
No 82
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.29 E-value=0.021 Score=49.91 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=39.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC--ceeEEEEEE
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE--LLAKAKFHV 64 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G--era~DvFyV 64 (97)
..-|.|.+.||+|||++|+.++++++++|.+..+.+-. ..+.=.|-|
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~i 714 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTI 714 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEE
Confidence 56899999999999999999999999999999987653 444444544
No 83
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=96.02 E-value=0.02 Score=49.37 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=35.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
.+-|.|.+.||+|+|++|++++.+++++|.+....+-.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~ 647 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG 647 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 67899999999999999999999999999999998764
No 84
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=96.01 E-value=0.02 Score=49.72 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
.+.|.|.+.||+|||++|+.++.+.+++|.++...+-.
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~ 663 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKD 663 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcC
Confidence 67899999999999999999999999999999987765
No 85
>PRK11899 prephenate dehydratase; Provisional
Probab=95.89 E-value=0.072 Score=41.47 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=41.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEEEEccCCCCCCh
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKFHVSYKGEAIIK 73 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvFyVt~~g~~L~~ 73 (97)
.|.|-+...||||.|+++-.+|++.|||+.+=.= =+-+.--+=+|||+-+|+.-++
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~ 250 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDR 250 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCH
Confidence 6888888899999999999999999999864221 1234444558999877765333
No 86
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.87 E-value=0.019 Score=37.34 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=49.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe--cCCceeEEEEEE--ccCCCCCChH-HHHHHHHHHHHhc
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFD--TEELLAKAKFHV--SYKGEAIIKP-LQQVLANSLRYFL 87 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~--T~Gera~DvFyV--t~~g~~L~~~-~~~~L~~~L~~~L 87 (97)
+|++..-||-.+||++-+|..+++.|.+|.|. ..+++---+|-+ ++.++.++.. .+..+.+.+.+.|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999993 455666666444 4444456533 4456666555544
No 87
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.81 E-value=0.11 Score=32.29 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=34.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEccCC
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSYKG 68 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~~g 68 (97)
|-+...|+||-|+++-..|.++|+|+..=.=- .-+..-+=.|||+-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 44556899999999999999999998743221 1233445679997556
No 88
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=95.80 E-value=0.025 Score=44.53 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=40.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
+..++.++++|+||+.+.|+..|.++|.||..+-=- +....--||..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR 52 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMR 52 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEE
Confidence 468999999999999999999999999999887654 55666678884
No 89
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.78 E-value=0.049 Score=33.31 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.2
Q ss_pred CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 27 DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 27 DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
|+||.|.+|+.+|...|++|.+=.+..
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~ 27 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGP 27 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence 799999999999999999999988866
No 90
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=95.73 E-value=0.024 Score=49.35 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=40.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEE
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFH 63 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFy 63 (97)
-..-|.|.+.||+|||++|++++++.+.||.+....+.+.+..++.+
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~ 672 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQF 672 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEE
Confidence 47889999999999999999999999999999988777666666554
No 91
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=95.33 E-value=0.13 Score=38.02 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=38.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec--CCceeEEEE
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT--EELLAKAKF 62 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T--~Gera~DvF 62 (97)
.....++=+.-.||||.+.+|+.+|.++++||..-.+.- .|+.|-=+.
T Consensus 145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl 194 (208)
T TIGR00719 145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTI 194 (208)
T ss_pred cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEE
Confidence 555677788889999999999999999999999988864 455554433
No 92
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=95.21 E-value=0.028 Score=34.31 Aligned_cols=45 Identities=13% Similarity=0.134 Sum_probs=36.6
Q ss_pred CCeEEEEEEeC----CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 16 PNRSLLLVETA----DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 16 ~~~T~ieV~a~----DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
.++..|.|... |.||.+++|...|.+.|++|..-- -.-.|.|+|.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-----S~~~~~ilV~ 52 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-----SEISISILVK 52 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-----ESSEEEEEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-----EeeeEEEEEe
Confidence 46888888888 899999999999999999998765 3456777774
No 93
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.04 E-value=0.26 Score=31.08 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=37.0
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec-CCceeEEEEEEccCCCC
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDT-EELLAKAKFHVSYKGEA 70 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T-~Gera~DvFyVt~~g~~ 70 (97)
|-+...|+||-|+++-..|.++|+++.+=.=-- -+..-+=.|||+-+|+.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCH
Confidence 445568999999999999999999987543322 23445668999866665
No 94
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.02 E-value=0.18 Score=40.96 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=41.4
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY 66 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~ 66 (97)
......|.+...|+||.|++|+..|.+++++|.+-.-.........++++++
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3445788999999999999999999999999997755443335567788875
No 95
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=94.81 E-value=0.24 Score=40.16 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=42.5
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEccCCCCCCh
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSYKGEAIIK 73 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~~g~~L~~ 73 (97)
..|.|=+...|+||.|+++-..|+..|||+.+=.=- +-+.--+=+|||.-+|+.-++
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~ 353 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSA 353 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCH
Confidence 366777888999999999999999999998642221 345556678999877755333
No 96
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=94.79 E-value=0.26 Score=38.75 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=43.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEEEEccCCCCCC
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKFHVSYKGEAII 72 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvFyVt~~g~~L~ 72 (97)
..|.|-++.+|+||-|+++-.+|...|||+..=.= =+-+.--+=+|||+-+|+.=+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 48999999999999999999999999999753222 234455666899986666533
No 97
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=94.52 E-value=0.023 Score=36.48 Aligned_cols=29 Identities=7% Similarity=0.192 Sum_probs=26.4
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCeEEEE
Q 046242 20 LLLVETAD-RPGLLVDLVKIFTVINVNVES 48 (97)
Q Consensus 20 ~ieV~a~D-RpGLL~~I~~~~~~~~l~I~~ 48 (97)
++.|.+.| ++|.+++|+++|+++|+||..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 47788999 999999999999999999964
No 98
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.47 E-value=0.15 Score=41.11 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=39.6
Q ss_pred CeEEEEEEeC-CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCC
Q 046242 17 NRSLLLVETA-DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKG 68 (97)
Q Consensus 17 ~~T~ieV~a~-DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g 68 (97)
..+.|-+.-+ |+||-|++|..+|.++|+||.+=.+ ....--+-.|||+-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence 4667777776 9999999999999999999998888 3343344459997443
No 99
>PRK06382 threonine dehydratase; Provisional
Probab=94.10 E-value=0.45 Score=38.22 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=32.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEF 51 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI 51 (97)
..+.+.|+|.-+||||-|++|+++|.++|+||.+-..
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~ 363 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEV 363 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEE
Confidence 4568899999999999999999999999999976544
No 100
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.59 E-value=0.6 Score=28.16 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=37.0
Q ss_pred EEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEE-ccCCCCCChHHHHHHHHHHHH
Q 046242 22 LVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV-SYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 22 eV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyV-t~~g~~L~~~~~~~L~~~L~~ 85 (97)
.|.-+||||=|.++..++.+ |.||..-.=.-.+..-..+++. .-.+ ++..+.+.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 56779999999999999998 8776644433333333445543 2122 2355666676654
No 101
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.26 E-value=0.23 Score=40.26 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=43.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLA 80 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~ 80 (97)
..|-+.-.|+||.+++|+.+|.++|+||.+=+....|+.|-=+|=+ ++ ++.++..++|+
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~--D~-~~~~~~~~~i~ 397 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV--DA-DYAEEALDALK 397 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe--CC-CCcHHHHHHHH
Confidence 4444588999999999999999999999999999999665444422 33 44444444444
No 102
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=93.04 E-value=0.13 Score=36.51 Aligned_cols=44 Identities=25% Similarity=0.237 Sum_probs=33.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEE
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKF 62 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvF 62 (97)
.++-|.-.|+||=|++|+.+|.++++|+..+-- .|.-++|-=+|
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~ 114 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIV 114 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEE
Confidence 467888899999999999999999999987653 23334444333
No 103
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=92.89 E-value=0.24 Score=35.21 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=33.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEEL 56 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Ge 56 (97)
.|.|...++||-|+.++++|++.|+||+.=.|+--|+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d 41 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD 41 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC
Confidence 4788899999999999999999999999998877665
No 104
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.86 E-value=0.36 Score=40.23 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=42.7
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEec--CCceeEEEEEEccCCCCCChHHHHHHH
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDT--EELLAKAKFHVSYKGEAIIKPLQQVLA 80 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T--~Gera~DvFyVt~~g~~L~~~~~~~L~ 80 (97)
.....++=+.-.||||.++.|+.+|.++++||.+-++.= -|.+|-=++-+ .++++++..++|+
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~---D~~v~~~~l~~i~ 513 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV---DDPVPEEVLEELR 513 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC---CCCCCHHHHHHHh
Confidence 445556666779999999999999999999999888754 33444333322 3355655444444
No 105
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.57 E-value=0.29 Score=33.41 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=38.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC-ceeEEEEEEccCCCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE-LLAKAKFHVSYKGEA 70 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G-era~DvFyVt~~g~~ 70 (97)
.|-|-+...|+||-|++|-..|..+|+|+.+=.=--.+ ..-+=.|||.-+|+.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCH
Confidence 56777777999999999999999999998754333332 223347889755653
No 106
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.43 E-value=1.8 Score=27.35 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=37.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeE-EEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVN-VESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~-I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
++.|.=+||||=|+++..+|...|++ ++..+... ..+.=.+-+.-.+. .+..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~~anI~~~~y~~~~~--~~~~v~i~ie~~~~---~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIGPRNITEFNYRYADE--KDAHIFVGVSVANG---AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhCCCceeEEEEEccCC--CeeEEEEEEEeCCc---HHHHHHHHHHHHH
Confidence 57788899999999999999966665 34455444 33333333432221 2234555666553
No 107
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=92.28 E-value=0.38 Score=40.12 Aligned_cols=63 Identities=13% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe--cCCceeEEEEEEccCCCCCChHHHHHHHH
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD--TEELLAKAKFHVSYKGEAIIKPLQQVLAN 81 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~--T~Gera~DvFyVt~~g~~L~~~~~~~L~~ 81 (97)
....++=+.-.||||.+..|+.+|.++++||.+-++. .-|++|-=++-+ .++++++..++|++
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~---D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL---DQPVPDEVLEEIKA 513 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc---CCCCCHHHHHHHhc
Confidence 4455566677999999999999999999999887764 445555433333 33666655555543
No 108
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.23 E-value=0.32 Score=35.77 Aligned_cols=35 Identities=9% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCeEEEEEEeC--CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETA--DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~--DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
-++-++|+.+. +-||.|+.++..++++|++|.-+-
T Consensus 91 lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~ 127 (167)
T COG2150 91 LGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQII 127 (167)
T ss_pred cCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEe
Confidence 45789999884 469999999999999999999874
No 109
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.49 E-value=1.9 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=25.5
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCeEEEEE
Q 046242 19 SLLLVE---TADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 19 T~ieV~---a~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
+.|.|. -+++||++++|-.+|.++|+++-.=
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI 35 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLI 35 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEE
Confidence 345552 4788999999999999999999875
No 110
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=91.17 E-value=0.45 Score=37.59 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEE
Q 046242 17 NRSLLLVETADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 17 ~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
+.-.+.|.-+||||-|+++.+.+.++|.||.+-
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i 336 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKI 336 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 345889999999999999999999999998755
No 111
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.06 E-value=2.5 Score=26.33 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCC-CChHHHHHHHHHHHH
Q 046242 26 ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEA-IIKPLQQVLANSLRY 85 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~-L~~~~~~~L~~~L~~ 85 (97)
.+.||++++|-.+|.++|+++-.= +| ++ |.+-++ ....+ +.++..++|.++|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI--~~-s~---~~isftv~~~~~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLV--ST-SE---TNVTVSLDPDPNGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee-CC---CEEEEEEeCcccccchHHHHHHHHHHHh
Confidence 588999999999999999999875 34 44 444443 22222 444344566666655
No 112
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.94 E-value=0.37 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=24.1
Q ss_pred eCCcccHHHHHHHHHHhCCeEEEEEEE
Q 046242 25 TADRPGLLVDLVKIFTVINVNVESGEF 51 (97)
Q Consensus 25 a~DRpGLL~~I~~~~~~~~l~I~~AkI 51 (97)
..|+||.++++...|.++|+++..-..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 478999999999999999999987654
No 113
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=90.67 E-value=1.2 Score=33.58 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=35.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
+.+.+.++||.|.+++..++++|.||..|.--..++--.-..|..
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmE 49 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYME 49 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEE
Confidence 678899999999999999999999999998655544223334443
No 114
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.37 E-value=1.2 Score=35.15 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=41.4
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
..+.-+.|.-+||||-|++|+..+.+.|+||.+-+|.---|...-+.-++
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~ 337 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQIS 337 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEE
Confidence 35788889999999999999999999999999999965555555555553
No 115
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=90.36 E-value=0.59 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=24.9
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCeEEEEEE
Q 046242 20 LLLVETAD---RPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 20 ~ieV~a~D---RpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
++.|...+ .||.++++-++|.++++++..--
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~ 35 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMIS 35 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 45555554 89999999999999999997653
No 116
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.03 E-value=2.1 Score=24.89 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=28.3
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
++|.+.+. ++||.+++|-++|.+.|+++..---++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 45566654 789999999999999999998775544
No 117
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=90.01 E-value=2.8 Score=25.35 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=41.3
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEE-EEEccCCCCCChHHHHHHHHHHHHhcCCCCc
Q 046242 19 SLLLVET---ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAK-FHVSYKGEAIIKPLQQVLANSLRYFLRRPTT 92 (97)
Q Consensus 19 T~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~Dv-FyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~ 92 (97)
+++++.+ .++||+++++-++|.+.++++..---++-+ .++ |.+.. ... +...+.|.+++...+.+...
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~---~~isf~v~~-~d~--~~~~~~l~~~~~~~~~~~~~ 73 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE---HSISFVVDE-SDA--DKALEALEEEFALEIKAGLI 73 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc---ceEEEEEeH-HHH--HHHHHHHHHHHHhhhhhCcc
Confidence 4566643 478999999999999999999766444333 344 33322 111 11235566666655555443
No 118
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=89.50 E-value=1.6 Score=36.38 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=36.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
-+||.+.||.|+-.+|-..|..+++++..-.|...|- .|+.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~~-----~~~~ 42 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGR-----IYLN 42 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCCe-----EEEe
Confidence 3799999999999999999999999999999988753 6674
No 119
>PLN02317 arogenate dehydratase
Probab=89.42 E-value=2.8 Score=34.29 Aligned_cols=53 Identities=17% Similarity=0.353 Sum_probs=38.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe---cCCce------------eEEEEEEccCCCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD---TEELL------------AKAKFHVSYKGEA 70 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~---T~Ger------------a~DvFyVt~~g~~ 70 (97)
.|.|-+.-.|+||-|+++-.+|...|||+..=.=- +--.+ -+=.|||+-+|..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~ 350 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM 350 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCc
Confidence 57777888999999999999999999998643221 11122 2348999866654
No 120
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=89.39 E-value=0.86 Score=26.38 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=28.0
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVET---ADRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
++|.+.+ .++||++++|-++|.+.|+++..---++
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566666 4889999999999999999997764433
No 121
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=89.05 E-value=0.57 Score=27.32 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.5
Q ss_pred eCCcccHHHHHHHHHHhCCeEEEEEEE
Q 046242 25 TADRPGLLVDLVKIFTVINVNVESGEF 51 (97)
Q Consensus 25 a~DRpGLL~~I~~~~~~~~l~I~~AkI 51 (97)
..|+||.+++|.++|.+.|++|..---
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 368999999999999999999985543
No 122
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=88.92 E-value=2.3 Score=35.72 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEE--EEEEccCCCC
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKA--KFHVSYKGEA 70 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~D--vFyVt~~g~~ 70 (97)
+...|-|=++-.|+||-|+++-++|.++|+|+..=.=--...+-.+ .|||+-+|+.
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~ 85 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFH 85 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCH
Confidence 3446777788899999999999999999999875433223223333 7899755554
No 123
>PRK08198 threonine dehydratase; Provisional
Probab=88.55 E-value=0.94 Score=36.10 Aligned_cols=38 Identities=32% Similarity=0.407 Sum_probs=32.4
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD 52 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~ 52 (97)
..+...+.|.-+||||-|+++.+++.++|.||..-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 34567899999999999999999999999988765543
No 124
>PRK11898 prephenate dehydratase; Provisional
Probab=87.38 E-value=5.1 Score=31.04 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.1
Q ss_pred eEEEEEEeCC-cccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEEccCCCC
Q 046242 18 RSLLLVETAD-RPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHVSYKGEA 70 (97)
Q Consensus 18 ~T~ieV~a~D-RpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyVt~~g~~ 70 (97)
.|.|-+.-.+ +||-|+++-.+|.++|+|+..=.=- .-+..-+=.|||+-+|+.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~ 250 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHI 250 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccC
Confidence 5666666655 6999999999999999998743221 123334558999866764
No 125
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=85.89 E-value=0.78 Score=36.33 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=36.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEE
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKF 62 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvF 62 (97)
..+++|.+.-.|-||.|.+|+.+|+..|+||.+--+-- -++.+.|
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~--tevk~Ls 119 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL--TEVKALS 119 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeec--hhhhhhh
Confidence 34889999999999999999999999999998765411 3445555
No 126
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=85.80 E-value=7.2 Score=32.57 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=39.2
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE-ecCCceeEEEEEEccCCCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEF-DTEELLAKAKFHVSYKGEA 70 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI-~T~Gera~DvFyVt~~g~~ 70 (97)
.|-|-++..|+||-|+++-++|.++|+|+.+=.= -+-+..-+=.|||+-+|+.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCc
Confidence 6788888899999999999999999999874321 1122333447999866654
No 127
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=85.71 E-value=6.1 Score=24.14 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=37.0
Q ss_pred EEEEEE---eCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCC-hHHHHHHHHHHHH
Q 046242 19 SLLLVE---TADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAII-KPLQQVLANSLRY 85 (97)
Q Consensus 19 T~ieV~---a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~-~~~~~~L~~~L~~ 85 (97)
+++.|. -.+.||++++|-.+|.+.|+++..- +| ++ .++-++-....... +...++|.++|..
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~-s~--~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--ST-SE--VSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--Ec-CC--cEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 345553 2678999999999999999999664 33 33 23222223333222 2233566666655
No 128
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=85.70 E-value=1.9 Score=25.53 Aligned_cols=33 Identities=9% Similarity=0.251 Sum_probs=26.5
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
+++.|.+. ++||+++++-.+|.+.|+++. -++|
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~--~~~~ 37 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL--QTAD 37 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE--EEEc
Confidence 34566664 789999999999999999996 4444
No 129
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=84.36 E-value=9.5 Score=25.21 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=41.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecC--CceeEEEEEEc
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTE--ELLAKAKFHVS 65 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~--Gera~DvFyVt 65 (97)
+..+.+.+.++||+|.+|-++-..-|..+-.-.-++. ++++.=-|.|.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence 5678999999999999999999999999988777776 78877777773
No 130
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=83.74 E-value=2.4 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.6
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEE
Q 046242 20 LLLVETA---DRPGLLVDLVKIFTVINVNVESGEF 51 (97)
Q Consensus 20 ~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI 51 (97)
+|.+... +++|+++++...|.+.++++..---
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566544 8899999999999999999966543
No 131
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.36 E-value=2.8 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=28.2
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
+++.+.+. ++||++++|-..|.+.|+++...-.++
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666664 789999999999999999998775544
No 132
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.79 E-value=3.2 Score=23.82 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.9
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 19 SLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 19 T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
+++.+.+. ++||+++++-+.|.+.|+++..--.++
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35555554 789999999999999999998775544
No 133
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=81.98 E-value=9.1 Score=23.72 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHH
Q 046242 26 ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~ 85 (97)
.-+||++++|-.+|.++|+++-.= .+ ++ |-+-++-....+.++..++|.+.|..
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I--~~-s~---~~isftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLI--ST-SE---VHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEE--Ee-CC---CEEEEEEehhhcChHHHHHHHHHHHH
Confidence 346999999999999999999865 34 44 43433312122233344566666655
No 134
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=81.54 E-value=3.3 Score=23.98 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 26 ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
.++||+.++|-++|.+.|+++..- +| ++ ..=.|+|.
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~ 46 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLD 46 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEe
Confidence 478999999999999999999876 44 44 22346664
No 135
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=81.14 E-value=1.2 Score=32.54 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=30.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEF 51 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI 51 (97)
..++.+.-.|.||-|++++..|++.|+||.+=.+
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv 37 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTV 37 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEE
Confidence 5678888899999999999999999999988655
No 136
>PRK06635 aspartate kinase; Reviewed
Probab=77.14 E-value=4.4 Score=32.16 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=29.8
Q ss_pred CCeEEEEEEe---CCcccHHHHHHHHHHhCCeEEEEE
Q 046242 16 PNRSLLLVET---ADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 16 ~~~T~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
++.+++.|.+ .|+||.+++|.++|.+.|++|..-
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 4577888876 699999999999999999999874
No 137
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.93 E-value=5.7 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=24.7
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCeEEEEEE
Q 046242 20 LLLVET---ADRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 20 ~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
.+.|.+ .+.||+++++-..|.+.++++..--
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 345543 4779999999999999999997664
No 138
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=75.23 E-value=46 Score=32.06 Aligned_cols=84 Identities=15% Similarity=0.220 Sum_probs=60.6
Q ss_pred cceEEEecC---CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC-----ceeEEEEEEc-cCCCCCChH-H
Q 046242 6 ATHISIYDD---GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE-----LLAKAKFHVS-YKGEAIIKP-L 75 (97)
Q Consensus 6 ~~~V~~~~~---~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G-----era~DvFyVt-~~g~~L~~~-~ 75 (97)
+..+.+... .++...+.+....+|..|++|.-+|..+|+.+....=-.+. ..-..-|++. ..+..+... .
T Consensus 474 ~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~ 553 (1528)
T PF05088_consen 474 PLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDI 553 (1528)
T ss_pred CceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHH
Confidence 456666532 45689999999999999999999999999999988543332 3455667775 456555543 4
Q ss_pred HHHHHHHHHHhcCC
Q 046242 76 QQVLANSLRYFLRR 89 (97)
Q Consensus 76 ~~~L~~~L~~~L~~ 89 (97)
++.+.+++.+...+
T Consensus 554 ~~~~~~a~~~v~~g 567 (1528)
T PF05088_consen 554 RERFEEAFEAVWNG 567 (1528)
T ss_pred HHHHHHHHHHHhcC
Confidence 57788887766554
No 139
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=74.73 E-value=6 Score=31.40 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEE
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVES 48 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~ 48 (97)
++.++|.|.+. ++||.++++.++|.+.|++|..
T Consensus 335 ~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 335 EGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 45778888885 7999999999999999999985
No 140
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.54 E-value=3.3 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHHHhCCeEEEEE
Q 046242 26 ADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
++.||.+++|-.+|.++|+++-.-
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE
Confidence 688999999999999999999875
No 141
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=72.92 E-value=5.8 Score=37.77 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=52.8
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEE-------------EecC------CceeEEEEEEccCCCCCChHH
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGE-------------FDTE------ELLAKAKFHVSYKGEAIIKPL 75 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~Ak-------------I~T~------Gera~DvFyVt~~g~~L~~~~ 75 (97)
.+.+|+|+|.+.|.|=|.--|...|.++|+.||.-- +..+ |...|=..||.-+. ..+++.
T Consensus 14 ~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~-~~d~~~ 92 (1528)
T PF05088_consen 14 ESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDR-QSDPEE 92 (1528)
T ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcC-CCCHHH
Confidence 556999999999999999999999999999998631 1111 45556666774221 113455
Q ss_pred HHHHHHHHHHhcCC
Q 046242 76 QQVLANSLRYFLRR 89 (97)
Q Consensus 76 ~~~L~~~L~~~L~~ 89 (97)
.+.|++.|...|+.
T Consensus 93 ~~~L~~~L~~VL~d 106 (1528)
T PF05088_consen 93 LEALREDLERVLED 106 (1528)
T ss_pred HHHHHHHHHHHHHH
Confidence 67788887776653
No 142
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=70.94 E-value=5.9 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCcccHHHHHHHHHHhCCeEEEEEE
Q 046242 26 ADRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
.+.||+++++-..|.+.|+++..--
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEE
Confidence 4779999999999999999997765
No 143
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=70.76 E-value=1.8 Score=28.04 Aligned_cols=48 Identities=23% Similarity=0.253 Sum_probs=33.6
Q ss_pred eCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCC
Q 046242 25 TADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPT 91 (97)
Q Consensus 25 a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~ 91 (97)
..+|+.++.+|.+++.+.|. |||.+.| ++.+..+.+.+...+....+.
T Consensus 10 ~~~~~~~~~~l~~A~~~~GF-----------------f~l~nhG--i~~~l~~~~~~~~~~fF~lp~ 57 (116)
T PF14226_consen 10 PADREEVAEQLRDACEEWGF-----------------FYLVNHG--IPQELIDRVFAAAREFFALPL 57 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTSE-----------------EEEESSS--SSHHHHHHHHHHHHHHHCSHH
T ss_pred CccHHHHHHHHHHHHHhCCE-----------------EEEeccc--ccchhhHHHHHHHHHHHHhhH
Confidence 45688899999999999996 8886555 445555555555555555443
No 144
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.75 E-value=19 Score=21.24 Aligned_cols=42 Identities=12% Similarity=0.031 Sum_probs=29.9
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEE-EEE
Q 046242 20 LLLVETA--DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAK-FHV 64 (97)
Q Consensus 20 ~ieV~a~--DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~Dv-FyV 64 (97)
++.+.+. ..||+++++-.+|.+.|++++..-.+| .-..+ |.|
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~---s~~sis~~v 47 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA---SKVNISLIV 47 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC---ccceEEEEE
Confidence 4444443 468999999999999999998766444 33344 555
No 145
>PRK08526 threonine dehydratase; Provisional
Probab=67.98 E-value=10 Score=30.74 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=30.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEE
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
..+...+.|.-+||||=|.++...+.+.+.||..-.
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~ 358 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKID 358 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEE
Confidence 345788999999999999999999999988876543
No 146
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.96 E-value=19 Score=20.95 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=27.7
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEE-EEEc
Q 046242 19 SLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAK-FHVS 65 (97)
Q Consensus 19 T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~Dv-FyVt 65 (97)
+++.+.+. ++||+++++-.+|.+.++.+ -+.|..-..+ |.|.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~~-----i~~~~s~~~is~~V~ 47 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVRM-----ICYGASNHNLCFLVK 47 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeEE-----EEEecCccEEEEEEe
Confidence 45666665 78999999999998754443 3344454455 5553
No 147
>PRK08210 aspartate kinase I; Reviewed
Probab=66.57 E-value=12 Score=29.86 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCCeEEEEEEeCCc-ccHHHHHHHHHHhCCeEEEEEE
Q 046242 15 GPNRSLLLVETADR-PGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 15 ~~~~T~ieV~a~DR-pGLL~~I~~~~~~~~l~I~~Ak 50 (97)
..+...++|...+. ||.|++|..+|.++|++|..--
T Consensus 268 ~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~ 304 (403)
T PRK08210 268 VSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFIN 304 (403)
T ss_pred cCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEE
Confidence 45577888877666 9999999999999999999863
No 148
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.19 E-value=13 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=27.8
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEE-EEEc
Q 046242 20 LLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAK-FHVS 65 (97)
Q Consensus 20 ~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~Dv-FyVt 65 (97)
++.+... +.||+++++.++|.+.++.+.+ .|..-..+ |+|.
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~-----~~~s~~~is~vv~ 46 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVS-----QAANDLNLTFVVD 46 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEE-----EeCCCCeEEEEEe
Confidence 4455554 6799999999999998776633 34444455 5553
No 149
>PRK00907 hypothetical protein; Provisional
Probab=65.92 E-value=27 Score=23.04 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=44.4
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEE----ecCCceeEEEEEEccCCCCCChHHHHHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEF----DTEELLAKAKFHVSYKGEAIIKPLQQVLANSLR 84 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI----~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~ 84 (97)
.-+.|.+.++++|...|..++.++.-....++| +.-|--..=.+-|+..+ .++.+.|-++|.
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats----~eQld~iY~~L~ 83 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAES----REQYDAAHQALR 83 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 567899999999999999999988766655555 77776666555554322 235566766665
No 150
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=65.45 E-value=16 Score=22.63 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=32.4
Q ss_pred CcccHHH----HHHHHHHhCCeE-EEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCccccC
Q 046242 27 DRPGLLV----DLVKIFTVINVN-VESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTEEAS 96 (97)
Q Consensus 27 DRpGLL~----~I~~~~~~~~l~-I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~~~~ 96 (97)
=+||.+- .|.++|.++|++ +..++ +--.|++ +| +++++.+.+.+ +.|..|+.|.-+
T Consensus 9 ~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr-------~~k~~~l--~~--~~~~~~~~i~~---~lL~Npvie~~~ 69 (73)
T PRK06423 9 YKPGVEDPEALTILKNLNILGYNGIKGVS-------ISKVYYF--DA--DSYNEVDEIAG---KILTNPVIHSYK 69 (73)
T ss_pred ECCCCcChHHHHHHHHHHHcCCCCcceEE-------EEEEEEE--ec--CCHHHHHHHHH---HhcCCceeeEEE
Confidence 3788774 466667778765 44433 3345777 34 34433344443 458888887643
No 151
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=64.18 E-value=7.8 Score=32.59 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=32.8
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCC
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEE 55 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~G 55 (97)
|||.+.||-||..++-..|...+|++..-.|+-+|
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 79999999999999999999999999999996666
No 152
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=63.77 E-value=7.2 Score=23.54 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=21.4
Q ss_pred CcccHHHHHHHHHHhCCeEEEEE
Q 046242 27 DRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 27 DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
+.||.+++|-..|.+.|++|-.=
T Consensus 11 ~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 11 NENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred CCccHHHHHHHHHHHcCCcEEEE
Confidence 56999999999999999999887
No 153
>PRK08210 aspartate kinase I; Reviewed
Probab=63.73 E-value=14 Score=29.46 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=30.7
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
++.++|.|.+. ++||.++++-.+|.+.|++|.. ++|
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~ 375 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SAD 375 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--Eec
Confidence 46788888885 8999999999999999999975 554
No 154
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=63.72 E-value=7.8 Score=23.16 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=17.9
Q ss_pred EccCCCCCChHHHHHHHHHHHHhc
Q 046242 64 VSYKGEAIIKPLQQVLANSLRYFL 87 (97)
Q Consensus 64 Vt~~g~~L~~~~~~~L~~~L~~~L 87 (97)
|+.+|+||+++-++.++..+-+.|
T Consensus 24 vSf~GrPltdevK~a~k~i~~~~l 47 (49)
T PF06543_consen 24 VSFDGRPLTDEVKEAMKLIFGKRL 47 (49)
T ss_pred eeeCCeeCCHHHHHHHHHHHhhhc
Confidence 566899999988777776655544
No 155
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=58.66 E-value=97 Score=25.04 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=41.1
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEE-ccCCCCCChHHHHHHHHHHHH
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHV-SYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyV-t~~g~~L~~~~~~~L~~~L~~ 85 (97)
..+...+.+.=+||||=|.++...+...+-||..-+=. ..|-....+.+. .-.+ ++..+.+.++|.+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 35578899999999999999999555555466643333 444333344433 2222 3345666666654
No 156
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=57.36 E-value=23 Score=23.36 Aligned_cols=62 Identities=10% Similarity=-0.006 Sum_probs=44.0
Q ss_pred CCcccHHHHHHHHHHhC--------CeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHHHHHHHHhc
Q 046242 26 ADRPGLLVDLVKIFTVI--------NVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVLANSLRYFL 87 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~--------~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L~~~L 87 (97)
.++.+|+..+++++.+. =+.+|...--++|.+-++..||+ .-...++.++++++.++|.+.|
T Consensus 15 ~~~~~~~~~~~~~l~~~lgkPe~~~~v~~~~~~~m~f~g~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l 85 (116)
T PTZ00397 15 DQADAALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHDGCCFVRVTSIGGISRSNNSSIAAAITKIL 85 (116)
T ss_pred ccHHHHHHHHHHHHHHHhCCChHHEEEEEeCCceEEECCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 45789999999998875 35677777788899999999997 3233445665555555555444
No 157
>PRK09084 aspartate kinase III; Validated
Probab=56.44 E-value=1.1e+02 Score=25.09 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
..+.+++.|... +.||.+++|-.+|.++|++|..--
T Consensus 303 ~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~ 341 (448)
T PRK09084 303 RRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT 341 (448)
T ss_pred eCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe
Confidence 456788888765 689999999999999999998764
No 158
>PRK06291 aspartate kinase; Provisional
Probab=56.39 E-value=22 Score=29.18 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=30.1
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
.++.++|.|... ++||+++++..+|.++|+++..--
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIs 356 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 345778888764 789999999999999999998753
No 159
>PLN02997 flavonol synthase
Probab=56.23 E-value=24 Score=27.77 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=39.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
=+|++...|+.-++.+|.+++.+.|. |||.+.| +..+..+.+.+..++..+.|..|
T Consensus 34 PvIDls~~~~~~~~~~l~~Ac~~~GF-----------------F~v~nHG--I~~~li~~~~~~~~~FF~LP~ee 89 (325)
T PLN02997 34 PVVDLSVSDEDFLVREVVKASEEWGV-----------------FQVVNHG--IPTELMRQLQMVGKQFFELPEAE 89 (325)
T ss_pred CeEECCCCCHHHHHHHHHHHHHHCCE-----------------EEEECCC--CCHHHHHHHHHHHHHHHcCCHHH
Confidence 35666666788899999999999996 8886544 44555566666666666665544
No 160
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=55.93 E-value=22 Score=27.93 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=39.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
-=+|+++..+|..++.+|.+++.+.|. |||.+.| ++.+..+.+.+..++.-+.|..|
T Consensus 38 iPvIDls~~~~~~~~~~l~~Ac~~~GF-----------------f~v~nHG--I~~~l~~~~~~~~~~fF~LP~e~ 94 (337)
T PLN02639 38 VPVIDLGSPDRAQVVQQIGDACRRYGF-----------------FQVINHG--VSAELVEKMLAVAHEFFRLPVEE 94 (337)
T ss_pred CCeEECCCccHHHHHHHHHHHHHhCCE-----------------EEEEcCC--CCHHHHHHHHHHHHHHhcCCHHH
Confidence 456777777888999999999999996 8886544 44555555555555555554433
No 161
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=55.28 E-value=23 Score=28.59 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=29.8
Q ss_pred CCeEEEEEEe---CCcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVET---ADRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
++.+++.|.+ .++||++++|-.+|.+.|++|..--
T Consensus 376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 4678888865 4889999999999999999997654
No 162
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=55.26 E-value=24 Score=27.91 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCCeEEEEEE---eCCcccHHHHHHHHHHhCCeEEEEE
Q 046242 15 GPNRSLLLVE---TADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 15 ~~~~T~ieV~---a~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
..+..++.|. -.++||.+++|-.+|.+.++++..-
T Consensus 257 ~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i 294 (401)
T TIGR00656 257 RKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294 (401)
T ss_pred ECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 3457778887 4688999999999999999999754
No 163
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=54.88 E-value=5.6 Score=26.35 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=17.2
Q ss_pred EEEEccCCCCCChHHHHHHHHH
Q 046242 61 KFHVSYKGEAIIKPLQQVLANS 82 (97)
Q Consensus 61 vFyVt~~g~~L~~~~~~~L~~~ 82 (97)
.|||+-.|..|+.++++.|.++
T Consensus 55 ~FYINRAGk~L~~~rr~~LE~A 76 (86)
T PF11373_consen 55 NFYINRAGKNLPKERRAVLERA 76 (86)
T ss_pred HHHHhcccccCCHHHHHHHHHH
Confidence 5999888999998877665554
No 164
>PRK06635 aspartate kinase; Reviewed
Probab=54.63 E-value=14 Score=29.28 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=25.7
Q ss_pred eEEEEEE-eCCcccHHHHHHHHHHhCCeEEEEE
Q 046242 18 RSLLLVE-TADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 18 ~T~ieV~-a~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
..+|.|. -.++||.|++|..+|.+.|+++..-
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~i 294 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDMI 294 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 4444443 3578999999999999999999964
No 165
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=54.55 E-value=19 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=36.4
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEe-cCCceeEEEEEE
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFD-TEELLAKAKFHV 64 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~-T~Gera~DvFyV 64 (97)
..+--.+.+.-.||.|.|+++-.++++.++||-.-+=+ -+-++|.=+--+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 44455677888999999999999999999998765422 123566555555
No 166
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=54.27 E-value=39 Score=22.83 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=32.8
Q ss_pred CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 27 DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 27 DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
+|..+..+|.+++.++| .|||.+.| ++.+..+.+.....+....|..|
T Consensus 52 ~~~~~~~~L~~A~~~~G-----------------Ff~l~nhG--i~~elid~~~~~~~~FF~LP~e~ 99 (120)
T PLN03176 52 KRAEICNKIVEACEEWG-----------------VFQIVDHG--VDAKLVSEMTTLAKEFFALPPEE 99 (120)
T ss_pred HHHHHHHHHHHHHHHCC-----------------EEEEECCC--CCHHHHHHHHHHHHHHHCCCHHH
Confidence 35678999999999999 58886444 44555566666666665555443
No 167
>PRK09034 aspartate kinase; Reviewed
Probab=53.38 E-value=26 Score=28.71 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=29.6
Q ss_pred CCCeEEEEEEe---CCcccHHHHHHHHHHhCCeEEEEE
Q 046242 15 GPNRSLLLVET---ADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 15 ~~~~T~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
.++.++|.|.. .++||.+++|..+|.++|+++..-
T Consensus 305 ~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i 342 (454)
T PRK09034 305 DKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM 342 (454)
T ss_pred cCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 44567888874 678999999999999999999984
No 168
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=52.89 E-value=23 Score=21.18 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=29.6
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEE-EEE
Q 046242 19 SLLLVETA--DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAK-FHV 64 (97)
Q Consensus 19 T~ieV~a~--DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~Dv-FyV 64 (97)
+++.+.+. -+||+++++-++|.+.|++++.-- .|..-..+ |.|
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~---~~~s~~~is~~V 48 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH---QSMRNVDVQFVV 48 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE---ecCCeeEEEEEE
Confidence 44555543 379999999999999999997654 33333344 445
No 169
>PRK08841 aspartate kinase; Validated
Probab=52.79 E-value=25 Score=28.46 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
.+.+++.+.....||.++++-.+|.+.|++|++--
T Consensus 316 ~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 316 ESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 56889999999999999999999999999996543
No 170
>PRK12483 threonine dehydratase; Reviewed
Probab=51.97 E-value=1.4e+02 Score=25.32 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeE
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVN 45 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~ 45 (97)
.+...+.|.-+||||=|.++..++...++.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~ni~ 372 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKRQIT 372 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhcCeE
Confidence 457889999999999999999999988554
No 171
>PRK07431 aspartate kinase; Provisional
Probab=50.80 E-value=28 Score=29.28 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
++.+++.|... .+||+++++-.+|.+.|++++..-
T Consensus 517 ~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 517 PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 56888999986 899999999999999999997755
No 172
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A.
Probab=50.40 E-value=59 Score=21.31 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=43.3
Q ss_pred eEEEEEEeCCc--ccHHHHHHHHHHhC-CeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcC
Q 046242 18 RSLLLVETADR--PGLLVDLVKIFTVI-NVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLR 88 (97)
Q Consensus 18 ~T~ieV~a~DR--pGLL~~I~~~~~~~-~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~ 88 (97)
-|+.-....+. ..+...+.++.... .+.|+..++.+++.+-. +.|+...+ ++....|.++|.+.+.
T Consensus 28 ITL~~~~~~~~~~~~~~~~l~~~~~~~~~f~l~l~~~~~F~~~~~-vi~l~~~~----~~~L~~L~~~l~~~~~ 96 (153)
T PF13563_consen 28 ITLAFPFDIDDSLDELVEALARLAAGFPPFELRLDGFGSFPGKGR-VIFLNVEP----SPELEALHRALREALR 96 (153)
T ss_dssp EEEEEEEE--GGGHHHHHHHHHHHHHS--EEEEEEEEEEESSSSS-SEEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred eEEEecCcccccHHHHHHHHHHHHccCCCeEEEEccEEEcCCCCC-EEEEEcCC----CHHHHHHHHHHHHHHH
Confidence 45555555555 78888888888665 59999999999986444 88885411 2344666666666544
No 173
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=50.25 E-value=88 Score=22.13 Aligned_cols=56 Identities=16% Similarity=0.244 Sum_probs=39.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHHHHHHHH
Q 046242 19 SLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 19 T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L~~ 85 (97)
..|.|...| |+++..|.+++...++++.-- ..| .+..|. + ++|.+.++++...+..
T Consensus 45 ~~l~I~~~d-~~~i~~I~kAI~~s~l~l~p~---~d~----~~i~v~iP---~~T~E~R~~l~k~~k~ 101 (165)
T PF01765_consen 45 RTLVITPYD-PSLIKAIEKAIQKSNLNLNPQ---NDG----NTIRVPIP---PPTEERRKELVKQAKK 101 (165)
T ss_dssp TEEEEEESS-TTHHHHHHHHHHHTTSSSEEE---EET----TEEEEE-----SSSHHHHHHHHHHHHH
T ss_pred CEEEEEecc-ccchHHHHHHHHHCCCCCCcc---cCC----cEEEEECC---CCCHHHHHHHHHHHHH
Confidence 467788889 999999999999888766553 344 556664 4 6677766665555443
No 174
>PLN02704 flavonol synthase
Probab=49.85 E-value=32 Score=27.02 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=36.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCC
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRP 90 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~ 90 (97)
--+|++...|+.-+..+|.+++.+.|. |||.+. .++.+..+++.+..+..-+.+
T Consensus 43 iPvIDls~~~~~~~~~~l~~Ac~~~GF-----------------f~l~nH--GI~~~l~~~~~~~~~~FF~LP 96 (335)
T PLN02704 43 VPTIDLSDPDEEKLTRLIAEASKEWGM-----------------FQIVNH--GIPSEVISKLQKVGKEFFELP 96 (335)
T ss_pred CCeEECCCccHHHHHHHHHHHHHHcCE-----------------EEEEcC--CCCHHHHHHHHHHHHHHHcCC
Confidence 456788777888899999999999996 888544 444544455555545444443
No 175
>PRK08639 threonine dehydratase; Validated
Probab=47.43 E-value=1.5e+02 Score=23.94 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=37.9
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCeEEE---EEEEecCCceeEEEEEE-ccCCCCCChHHHHHHHHHHHH
Q 046242 15 GPNRSLLLVETADRPGLLVDLVKIFTVINVNVE---SGEFDTEELLAKAKFHV-SYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 15 ~~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~---~AkI~T~Gera~DvFyV-t~~g~~L~~~~~~~L~~~L~~ 85 (97)
..+...+.+.=+||||=|.++...+...+-||. .-+-. +-....++.. .-.| ++..+.+.++|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~--~~~~~~v~v~iE~~~----~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKN--NRETGPVLVGIELKD----AEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecC--CCCceEEEEEEEeCC----HHHHHHHHHHHHH
Confidence 445778999999999999999994444332444 33322 3223334322 1112 2345677777654
No 176
>PLN02551 aspartokinase
Probab=47.18 E-value=32 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=30.2
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEE
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
.++.++|.|... ++||.+++|-..|.++|++|-.-
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I 400 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV 400 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE
Confidence 445788898766 68999999999999999999876
No 177
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=47.02 E-value=66 Score=20.16 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=33.7
Q ss_pred CcccHHH----HHHHHHHhCCeE-EEEEEEecCCceeEEEEEEccCC--CCCChHHHHHHHHHHHHhcCCCCccccC
Q 046242 27 DRPGLLV----DLVKIFTVINVN-VESGEFDTEELLAKAKFHVSYKG--EAIIKPLQQVLANSLRYFLRRPTTEEAS 96 (97)
Q Consensus 27 DRpGLL~----~I~~~~~~~~l~-I~~AkI~T~Gera~DvFyVt~~g--~~L~~~~~~~L~~~L~~~L~~~~~~~~~ 96 (97)
=|||.+- .|.+.|.++|++ +.+.+ +--.|.++.+| ..+..++.+.+.+ +.|..|+.|.-+
T Consensus 9 ~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr-------~~k~~~l~~~~~~~~~a~~~v~~i~~---~lL~Npvie~~~ 75 (80)
T PRK05974 9 LKEGVLDPQGQAIKGALGSLGYDGVEDVR-------QGKYFELELEGESEEKAEADLKEMCE---KLLANPVIEDYR 75 (80)
T ss_pred ECCCCcChHHHHHHHHHHHcCCCCcceEE-------EEEEEEEEEcCCchhhhHHHHHHHHH---HhcCCceeeEEE
Confidence 4778774 455667778776 44443 33457776333 3333333344443 458888877643
No 178
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.26 E-value=72 Score=20.31 Aligned_cols=57 Identities=11% Similarity=0.108 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 27 DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 27 DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
...|.+.++-++|.++|+++..-- --.|.|-|.-++..++++..+.+.++|...|.=
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~P------SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~p 69 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMP------SGIDDISIIIRDNQLTDEKEQKILAEIKEELHP 69 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeec------CCCccEEEEEEccccchhhHHHHHHHHHHhcCC
Confidence 457999999999999999997642 224556665556666665446666777766543
No 179
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=44.22 E-value=45 Score=19.90 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=16.4
Q ss_pred CceeEEEEEEccCCCCCChH
Q 046242 55 ELLAKAKFHVSYKGEAIIKP 74 (97)
Q Consensus 55 Gera~DvFyVt~~g~~L~~~ 74 (97)
+..--|+||++..|.++-.-
T Consensus 21 ~~~k~dv~Y~sP~Gk~~Rs~ 40 (62)
T cd00122 21 SAGKGDVYYYSPCGKKLRSK 40 (62)
T ss_pred CCCcceEEEECCCCceecCH
Confidence 46788999999889888753
No 180
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=43.84 E-value=46 Score=26.10 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=36.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 21 LLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 21 ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
|.+...+++-++.+|.+++.+.|. |||.+.| ++.+..+.+.+..++..+.|..|
T Consensus 18 IDl~~~~~~~~~~~l~~Ac~~~GF-----------------f~l~nHG--I~~~l~~~~~~~~~~FF~LP~e~ 71 (332)
T PLN03002 18 IDLANDDLNHSVASLKQACLDCGF-----------------FYVINHG--INEEFMDDVFEQSKKFFALPLEE 71 (332)
T ss_pred EeCCchhHHHHHHHHHHHHHhCCE-----------------EEEeCCC--CCHHHHHHHHHHHHHHHcCCHHH
Confidence 444445666788899999999886 8885444 44666666666667666665544
No 181
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=43.26 E-value=33 Score=24.24 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=30.8
Q ss_pred cccceEEEecCCCCeEEEEEE---eCCcccHHHHHHHHHHhCCeEEE
Q 046242 4 DIATHISIYDDGPNRSLLLVE---TADRPGLLVDLVKIFTVINVNVE 47 (97)
Q Consensus 4 ~v~~~V~~~~~~~~~T~ieV~---a~DRpGLL~~I~~~~~~~~l~I~ 47 (97)
++|-.|+++ ..|..+.+. .-|-+|.|+.|.+.|++.|+.|.
T Consensus 52 ~vp~~V~~~---~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIF 95 (128)
T COG3603 52 RVPDVVQIE---KGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIF 95 (128)
T ss_pred cCCcceEec---CCeEEEEEeccccCCcchhhhhhhhhHhhCCccEE
Confidence 345555533 457777765 45999999999999999999873
No 182
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=42.98 E-value=81 Score=22.52 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=39.3
Q ss_pred eCCcccHHHHHHHHHHhC---CeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 25 TADRPGLLVDLVKIFTVI---NVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 25 a~DRpGLL~~I~~~~~~~---~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
..+|-++|.+|...|.++ ..++..|.|.|- .||++++++.|++.|......
T Consensus 84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA--------------~~Ls~~~~~~i~~~l~~~~g~ 137 (179)
T PRK13436 84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTT--------------EPLSEVQISRFESKLSKKLNK 137 (179)
T ss_pred HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEec--------------CCCCHHHHHHHHHHHHHHHCC
Confidence 368999999999988775 566666665543 488988889999998877654
No 183
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=41.53 E-value=84 Score=22.34 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=38.2
Q ss_pred eCCcccHHHHHHHHHHhC---CeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 25 TADRPGLLVDLVKIFTVI---NVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 25 a~DRpGLL~~I~~~~~~~---~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
..+|-++|.+|...|..+ --++..|.+.| -.+|++++++.|++.|.+....
T Consensus 79 ~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~S--------------A~~Ls~~q~~~i~~~l~~~~g~ 132 (176)
T PRK08474 79 ENKRLELIPAIAKELERQIALKENEYVGVVYS--------------NEKLSEETLKKLEEKLSKKFNA 132 (176)
T ss_pred HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEE--------------CccCCHHHHHHHHHHHHHHhCC
Confidence 368889999999998865 44555555443 4589998889999998876654
No 184
>PRK13431 F0F1 ATP synthase subunit delta; Provisional
Probab=41.43 E-value=75 Score=23.30 Aligned_cols=50 Identities=8% Similarity=0.035 Sum_probs=40.5
Q ss_pred CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 26 ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
.+|-++|-.|+..|....-++..|++.| -.||++++++.|++.|...+..
T Consensus 87 n~Rl~~LpeIa~~L~~~~~~i~~~~V~S--------------A~~Ls~~~~~~I~~~L~kk~g~ 136 (180)
T PRK13431 87 NNRLDMLELITEELSFDSKRTLEATLLV--------------PEKLENNELEAVQQKLQARFNA 136 (180)
T ss_pred cChHHHHHHHHHHHHHHHcCeEEEEEEe--------------cccCCHHHHHHHHHHHHHHHCC
Confidence 6899999999998888877777777655 3488888889999988877654
No 185
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=41.19 E-value=80 Score=19.01 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCC
Q 046242 29 PGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGE 69 (97)
Q Consensus 29 pGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~ 69 (97)
..+|+++++.| ...++|-+|.|+.+++...-.|++.-.|.
T Consensus 16 ~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 16 EPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPGD 55 (76)
T ss_dssp SCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES-
T ss_pred chHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEECC
Confidence 45788888776 46789999999999999999999964344
No 186
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.96 E-value=2.2e+02 Score=23.80 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=41.4
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEE-ccCCCCCChHHHHHHHHHHHH
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV-SYKGEAIIKPLQQVLANSLRY 85 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyV-t~~g~~L~~~~~~~L~~~L~~ 85 (97)
.+...+.|.=+||||=|.++.+++...+|.-.+=+- .+..-.-+|+. .-. .++..+.|.++|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~~nItef~yr~--~~~~~a~v~vgie~~----~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGNRNITEFNYRY--ADRKDAHIFVGVQLS----NPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhcceEEEEEEe--cCCCeEEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 467889999999999999999999987666433332 23222335543 211 13455677777653
No 187
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=39.54 E-value=40 Score=22.13 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=26.5
Q ss_pred CCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCC
Q 046242 54 EELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRP 90 (97)
Q Consensus 54 ~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~ 90 (97)
.-++.-=++|++.+|.|.+=..+.+|..|++-.-...
T Consensus 36 ~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~ 72 (83)
T cd06404 36 HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNK 72 (83)
T ss_pred CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcC
Confidence 3456667899988899988556678888877554443
No 188
>PRK07431 aspartate kinase; Provisional
Probab=37.96 E-value=59 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
++.++|.|... ++||+++++-.+|.+.|++|+.--
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 46788888886 899999999999999999997654
No 189
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=37.93 E-value=69 Score=25.38 Aligned_cols=55 Identities=15% Similarity=0.338 Sum_probs=37.7
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 20 LLLVET---ADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 20 ~ieV~a---~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
+|++.. .|+..+..+|.+++.+.|. |||.+.| ++.+..+.+.+..++.-+.|..|
T Consensus 44 vIDls~~~~~~~~~~~~~l~~A~~~~GF-----------------f~v~nHG--I~~~l~~~~~~~~~~FF~LP~ee 101 (348)
T PLN02912 44 LIDLRDLHGPNRADIINQFAHACSSYGF-----------------FQIKNHG--VPEETIKKMMNVAREFFHQSESE 101 (348)
T ss_pred eEECcccCCcCHHHHHHHHHHHHHHCCE-----------------EEEEeCC--CCHHHHHHHHHHHHHHhcCCHHH
Confidence 455443 4677899999999999996 8886544 55666666666666666655444
No 190
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=36.42 E-value=49 Score=20.93 Aligned_cols=18 Identities=11% Similarity=0.002 Sum_probs=15.2
Q ss_pred ceeEEEEEEccCCCCCCh
Q 046242 56 LLAKAKFHVSYKGEAIIK 73 (97)
Q Consensus 56 era~DvFyVt~~g~~L~~ 73 (97)
..-.|+||++..|.++..
T Consensus 23 ~~k~DvyY~sP~Gkk~RS 40 (77)
T cd01396 23 AGKFDVYYISPTGKKFRS 40 (77)
T ss_pred CCcceEEEECCCCCEEEC
Confidence 567899999988988765
No 191
>PRK09034 aspartate kinase; Reviewed
Probab=36.19 E-value=68 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
++.++|.|.+. ++||+++++-.+|.+.|+++..---++
T Consensus 383 ~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 383 HDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 46788888653 899999999999999999998765444
No 192
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=35.99 E-value=78 Score=28.18 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=32.0
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
..+.++|.|... ++||.++++-.+|.++|+++...--++
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss 353 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS 353 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 356788888765 689999999999999999998765443
No 193
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=35.93 E-value=85 Score=20.20 Aligned_cols=48 Identities=8% Similarity=-0.008 Sum_probs=34.2
Q ss_pred cccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHH
Q 046242 28 RPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQ 76 (97)
Q Consensus 28 RpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~ 76 (97)
.+|-+|.+-+-|.+.|+-... -....+.+..-.|.+|+.|.++-.+.+
T Consensus 38 ~~gtlY~~L~rLe~~GlI~~~-~~~~~~~~~rk~y~iT~~Gr~~l~~~~ 85 (100)
T TIGR03433 38 EEGSLYPALHRLERRGWIAAE-WGESENNRRAKFYRLTAAGRKQLAAET 85 (100)
T ss_pred CCCcHHHHHHHHHHCCCeEEE-eeecCCCCCceEEEECHHHHHHHHHHH
Confidence 468899999999999975443 233444555678889988887665543
No 194
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=35.70 E-value=81 Score=25.17 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=36.4
Q ss_pred EEEEEeC-----CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 20 LLLVETA-----DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 20 ~ieV~a~-----DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
+|++... +|..+..+|.+++.+.|. |||.+. .++.+..+.+.+..+...+.|..|
T Consensus 40 vIDls~~~~~~~~~~~~~~~l~~Ac~~~GF-----------------f~v~nH--GI~~~li~~~~~~~~~FF~LP~ee 99 (358)
T PLN02515 40 VISLAGIDEVGGRRGEICRKIVEACEDWGI-----------------FQVVDH--GVDANLVADMTRLARDFFALPAEE 99 (358)
T ss_pred EEEChhccCCchHHHHHHHHHHHHHHHCcE-----------------EEEEcC--CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4555443 367789999999999996 888544 455655566666656655554443
No 195
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=34.63 E-value=30 Score=21.30 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCeEE
Q 046242 31 LLVDLVKIFTVINVNV 46 (97)
Q Consensus 31 LL~~I~~~~~~~~l~I 46 (97)
=||||.++|...|+-=
T Consensus 45 RlYDI~NVLealgli~ 60 (71)
T PF02319_consen 45 RLYDIINVLEALGLIE 60 (71)
T ss_dssp HHHHHHHHHHHCTSEE
T ss_pred hhhHHHHHHHHhCcee
Confidence 3899999999999853
No 196
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=34.57 E-value=55 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=22.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCeEEEE
Q 046242 20 LLLVETADRPGLLVDLVKIFTVINVNVES 48 (97)
Q Consensus 20 ~ieV~a~DRpGLL~~I~~~~~~~~l~I~~ 48 (97)
++.+...|+++++ .+++.|.++|+.|..
T Consensus 4 lisv~~~dk~~~~-~~a~~l~~~G~~i~a 31 (116)
T cd01423 4 LISIGSYSKPELL-PTAQKLSKLGYKLYA 31 (116)
T ss_pred EEecCcccchhHH-HHHHHHHHCCCEEEE
Confidence 4556667888887 889999999999853
No 197
>PF02962 CHMI: 5-carboxymethyl-2-hydroxymuconate isomerase; InterPro: IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase transforms 5-carboxymethyl-2-hydroxy-muconic acid into 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid during the third step of the homoprotocatechuate catabolic pathway []. Homoprotocatechuate (HPC; 3,4-dihydroxyphenylacetate) is catabolized to Krebs cycle intermediates via extradiol (meta-) cleavage and the necessary enzymes are chromosomally encoded in a variety of bacteria []. 5-carboxymethyl-2-hydroxymuconate isomerase is probably a dimer of two identical subunits []. A comparison of the N-terminal half of the isomerase/decarboxylase sequence from the pathway (both encoded by the gene hpcE), with the second half showed significant similarity. This suggests that a duplication may have occurred to produce a bifunctional gene [].; PDB: 3E6Q_H 1OTG_B.
Probab=34.34 E-value=1.6e+02 Score=20.35 Aligned_cols=62 Identities=23% Similarity=0.310 Sum_probs=38.3
Q ss_pred CCcccHHHHHHHHHHhCC------eEEEEEEEecC--Cc-eeEEEE-EEc---cCCCCCChHHHHHHHHHHHHhcCC
Q 046242 26 ADRPGLLVDLVKIFTVIN------VNVESGEFDTE--EL-LAKAKF-HVS---YKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~------l~I~~AkI~T~--Ge-ra~DvF-yVt---~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
.|.++||..+..++.+.| +.++.-+..++ |+ ..+|-| +|+ ..|+. +++++.|.++|.++|..
T Consensus 15 ~d~~~ll~~l~~~~~~sglF~~~~IK~Ra~~~~~y~vgdg~~~~~FvHv~l~il~GRs--~e~k~~l~~~l~~~l~~ 89 (124)
T PF02962_consen 15 VDIPALLRALHDALLASGLFPEGGIKVRAIRCDHYRVGDGQPDDAFVHVTLRILAGRS--EEQKKALSEALLAVLKA 89 (124)
T ss_dssp TTHHHHHHHHHHHHHCTTSS-GGG-EEEEEEESSEEETTSSS-EEEEEEEEEEETT----HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCcChhceeeeeEecccEEEccCCCCCcEEEEEeeecCCCC--HHHHHHHHHHHHHHHHH
Confidence 489999999999987776 45555554443 32 334444 455 25776 77777777777766643
No 198
>PRK14646 hypothetical protein; Provisional
Probab=34.17 E-value=1.7e+02 Score=20.74 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEcc-CCCCCChHHHHHHHHHHHHhcCC
Q 046242 30 GLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSY-KGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 30 GLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~-~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
-+...+..++.++|+.+....+...|..-.=-.||+. +|..++=+.++.+.++|-+.|+.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 4566788899999999999999888754433556764 46668877788888888888874
No 199
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=33.77 E-value=69 Score=30.97 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=37.6
Q ss_pred cceEEEecC-CC--CeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEE
Q 046242 6 ATHISIYDD-GP--NRSLLLVETADRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 6 ~~~V~~~~~-~~--~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
.|.|.+.+. .. -+|+++|...|.|-|+--|-..+.++|+.+|..
T Consensus 73 ~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 73 APCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred CceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 467777744 33 379999999999999999999999999999875
No 200
>PRK06291 aspartate kinase; Provisional
Probab=33.76 E-value=78 Score=25.99 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
++.++|.|.+. ++||+++++-.+|.+.|++|+.--
T Consensus 396 ~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 396 KDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred CCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 46788888886 799999999999999999998544
No 201
>PLN02947 oxidoreductase
Probab=33.15 E-value=97 Score=24.91 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=38.0
Q ss_pred eEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 18 RSLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 18 ~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
--+|++... +|+..+.+|.+++.++|. |||.+.| ++.+..+.+.+..++.-+.|..|
T Consensus 67 iPvIDls~l~~~~~~~~~~~l~~Ac~~~GF-----------------F~v~nHG--Ip~~li~~~~~~~~~FF~LP~ee 126 (374)
T PLN02947 67 LPVIDLAELRGSNRPHVLATLAAACREYGF-----------------FQVVNHG--VPSEVIGGMIDVARRFFELPLEE 126 (374)
T ss_pred CCeEECcccCCccHHHHHHHHHHHHHHCcE-----------------EEEEcCC--CCHHHHHHHHHHHHHHhcCCHHH
Confidence 345565543 577899999999999996 8886555 44555555555556555555444
No 202
>PRK09181 aspartate kinase; Validated
Probab=32.45 E-value=84 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.055 Sum_probs=34.0
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS 65 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt 65 (97)
..+.++|.|... +.||++++|-.+|.+++++|. -|++- + ..=.|.|.
T Consensus 326 ~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~-~sis~~v~ 375 (475)
T PRK09181 326 SDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-A-NTITHYLW 375 (475)
T ss_pred cCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-C-cEEEEEEc
Confidence 346788888654 789999999999999999998 34442 2 22345553
No 203
>PRK09181 aspartate kinase; Validated
Probab=32.22 E-value=77 Score=26.48 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=29.5
Q ss_pred CCeEEEEEEeCC--cccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETAD--RPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~D--RpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
.+.++|.|.... +||+.+++-.+|.+.|++|..--
T Consensus 400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 467888888755 89999999999999999996643
No 204
>COG2892 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.12 E-value=1.5e+02 Score=19.46 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=26.5
Q ss_pred ccceEEEecCCCCeEEEEEEeCCcccHHHHHHHHHH
Q 046242 5 IATHISIYDDGPNRSLLLVETADRPGLLVDLVKIFT 40 (97)
Q Consensus 5 v~~~V~~~~~~~~~T~ieV~a~DRpGLL~~I~~~~~ 40 (97)
...+|.+.- .+++-+|+|.|.|-.+|=+.+-..|.
T Consensus 33 ~rSrv~l~~-~~~rI~l~I~A~D~s~lRaa~nS~lR 67 (82)
T COG2892 33 RRSRVKLER-DGNRIVLEIRAEDSSALRAAINSYLR 67 (82)
T ss_pred ccceeEEEe-cCCEEEEEEEecchHHHHHHHHHHHH
Confidence 344566654 47799999999999999887766654
No 205
>PLN02551 aspartokinase
Probab=32.11 E-value=86 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.7
Q ss_pred CCeEEEEEEeC--CcccHHHHHHHHHHhCCeEEEEEEEec
Q 046242 16 PNRSLLLVETA--DRPGLLVDLVKIFTVINVNVESGEFDT 53 (97)
Q Consensus 16 ~~~T~ieV~a~--DRpGLL~~I~~~~~~~~l~I~~AkI~T 53 (97)
.+.++|.|.+. .+||+++++-.+|.+.|++|+.--..+
T Consensus 443 ~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 443 QGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred CCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 45777777754 689999999999999999998765444
No 206
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=30.44 E-value=63 Score=20.41 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=16.5
Q ss_pred CceeEEEEEEccCCCCCChH
Q 046242 55 ELLAKAKFHVSYKGEAIIKP 74 (97)
Q Consensus 55 Gera~DvFyVt~~g~~L~~~ 74 (97)
+...-||||++..|.+|...
T Consensus 24 ~~~~~dV~Y~sP~GkklRs~ 43 (77)
T smart00391 24 SAGKFDVYYISPCGKKLRSK 43 (77)
T ss_pred CCCcccEEEECCCCCeeeCH
Confidence 45678999999999998753
No 207
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]
Probab=29.55 E-value=30 Score=28.27 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=14.7
Q ss_pred cccHHHHHHHHHHhCCe
Q 046242 28 RPGLLVDLVKIFTVINV 44 (97)
Q Consensus 28 RpGLL~~I~~~~~~~~l 44 (97)
+---||+||++|..+||
T Consensus 203 kvRRLYDIANVlssm~L 219 (388)
T KOG2578|consen 203 KVRRLYDIANVLSSMNL 219 (388)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44569999999999998
No 208
>PRK14639 hypothetical protein; Provisional
Probab=29.10 E-value=2e+02 Score=20.02 Aligned_cols=55 Identities=13% Similarity=0.042 Sum_probs=40.2
Q ss_pred HHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCC
Q 046242 35 LVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRP 90 (97)
Q Consensus 35 I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~ 90 (97)
+..++.++|+.+........|.+-.=-.||..+|. ++-+.++.+.++|.+.|+..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-v~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG-VNLDDCERLSELLSPIFDVE 57 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC-CCHHHHHHHHHHHHHHhccc
Confidence 45678899999999999887754433555764332 77667888888988888853
No 209
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=28.81 E-value=1.3e+02 Score=21.46 Aligned_cols=51 Identities=16% Similarity=0.055 Sum_probs=36.9
Q ss_pred eCCcccHHHHHHHHHHhC---CeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 25 TADRPGLLVDLVKIFTVI---NVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 25 a~DRpGLL~~I~~~~~~~---~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
-.+|-++|..|+..|.++ .-++..|.|.| -.||++++++.|++.|.+....
T Consensus 80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~s--------------A~~Ls~~q~~~l~~~L~k~~g~ 133 (184)
T PRK13434 80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVS--------------YPSLEPAQVDKLGSILSEKFKS 133 (184)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEE--------------cCCCCHHHHHHHHHHHHHHHCC
Confidence 368889999999998754 33345555433 3589998889999998876643
No 210
>PRK09224 threonine dehydratase; Reviewed
Probab=27.82 E-value=3.6e+02 Score=22.51 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=39.7
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEE-ccCCCCCChHHHHHHHHHHH
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHV-SYKGEAIIKPLQQVLANSLR 84 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyV-t~~g~~L~~~~~~~L~~~L~ 84 (97)
.+...+.|.=+||||=|.++.++|...+|.-.+=+- .+..-..+|+. .-.+. +.+.+.|.++|.
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~~~nItef~yr~--~~~~~a~V~vgie~~~~---~~~~~~i~~~L~ 390 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLGGRNVTEFNYRY--ADAKEAHIFVGVQLSRG---QEERAEIIAQLR 390 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhccCcEEEEEEEe--cCCCeEEEEEEEEeCCh---hhHHHHHHHHHH
Confidence 357789999999999999999999976665433222 33333445544 21111 112566666665
No 211
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=26.97 E-value=59 Score=20.22 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=15.0
Q ss_pred eeEEEEEEccCCCCCChH
Q 046242 57 LAKAKFHVSYKGEAIIKP 74 (97)
Q Consensus 57 ra~DvFyVt~~g~~L~~~ 74 (97)
.--|+||+++.|+++..-
T Consensus 29 ~~~dv~Y~sP~Gk~~RS~ 46 (77)
T PF01429_consen 29 GKKDVYYYSPCGKRFRSK 46 (77)
T ss_dssp TSEEEEEEETTSEEESSH
T ss_pred CceEEEEECCCCCEEeCH
Confidence 368999999999988763
No 212
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.76 E-value=1.4e+02 Score=22.17 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=21.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEEEE
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNVES 48 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I~~ 48 (97)
+-+|.|. |++|++ .+++.|.++|+.|.+
T Consensus 2 ~vLISVs--DK~~l~-~lAk~L~~lGf~I~A 29 (187)
T cd01421 2 RALISVS--DKTGLV-EFAKELVELGVEILS 29 (187)
T ss_pred EEEEEEe--CcccHH-HHHHHHHHCCCEEEE
Confidence 3455665 689966 899999999999953
No 213
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=26.60 E-value=2.1e+02 Score=19.46 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=35.8
Q ss_pred HHHHHHhCCeEEEEEEEecCCce-eEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 35 LVKIFTVINVNVESGEFDTEELL-AKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 35 I~~~~~~~~l~I~~AkI~T~Ger-a~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
|..++..+|+.+....+...|.. .-=+| |..++. ++-+.++.+.+++...|+.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~-id~~~g-v~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVF-IDKDGG-VSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEE-EE-SS----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEE-EEeCCC-CCHHHHHHHHHHHHHHHcc
Confidence 56778899999999999888855 43333 543433 7877888888998888876
No 214
>PF03539 Spuma_A9PTase: Spumavirus aspartic protease (A9); InterPro: IPR001641 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A9 (spumapepsin family, clan AA). Foamy viruses are single-stranded enveloped retroviruses that have been noted to infect monkeys, cats and humans. In the human virus, the aspartic protease is encoded by the retroviral gag gene [], and in monkeys by the pol gene []. At present, the virus has not been proven to cause any particular disease. However, studies have shown Human foamy virus causes neurological disorders in infected mice []. It is not clear whether the Foamy virus/spumavirus proteases share a common evolutionary origin with other aspartic proteases. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 2JYS_A.
Probab=26.55 E-value=27 Score=25.59 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=23.6
Q ss_pred HHHHhCCeEEEEEEEecC-CceeEEEEEEcc--CCCCCC
Q 046242 37 KIFTVINVNVESGEFDTE-ELLAKAKFHVSY--KGEAII 72 (97)
Q Consensus 37 ~~~~~~~l~I~~AkI~T~-Gera~DvFyVt~--~g~~L~ 72 (97)
.+|..-..-|...-|.|+ |++-.|+||++. +|+++.
T Consensus 21 ~~fl~~E~Pi~~~~i~Tihg~~~~~vYYl~fKi~grkv~ 59 (163)
T PF03539_consen 21 ESFLEEEQPIGKTLIKTIHGEKEQDVYYLTFKINGRKVE 59 (163)
T ss_dssp GGGTTT---SEEEEEE-SS-EEEEEEEEEEEEESS-EEE
T ss_pred HHHhCccccccceEEEEecCceeccEEEEEEEEcCeEEE
Confidence 356666777888889886 799999999983 688764
No 215
>PRK14634 hypothetical protein; Provisional
Probab=25.90 E-value=2.5e+02 Score=19.93 Aligned_cols=60 Identities=7% Similarity=-0.113 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEc-cCCCCCChHHHHHHHHHHHHhcCC
Q 046242 30 GLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVS-YKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 30 GLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt-~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
-+-.-+..++..+|+.+....+...|....=-.||. .+|..++=+.++.+.++|...|+.
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~ 68 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEA 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcc
Confidence 345566778889999999999988764433345575 457678877788888988888874
No 216
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=25.66 E-value=1.2e+02 Score=26.97 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~Ak 50 (97)
++.++|.|... ++||+++++-.+|.+.|++|+.--
T Consensus 394 ~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 394 ENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred CCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 56888988886 799999999999999999998653
No 217
>PLN02550 threonine dehydratase
Probab=24.65 E-value=1.1e+02 Score=26.63 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=27.7
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCeE-EEEEE
Q 046242 16 PNRSLLLVETADRPGLLVDLVKIFTVINVN-VESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~DRpGLL~~I~~~~~~~~l~-I~~Ak 50 (97)
.+...+.|.-+||||=|.+++.++...+|. +..-|
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~ni~~~~~~~ 450 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPMNITEFKYRY 450 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhhcceEEEEEe
Confidence 446789999999999999999999987543 34444
No 218
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=24.03 E-value=1.8e+02 Score=18.10 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=23.8
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCeEEEEE
Q 046242 20 LLLVETAD---RPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 20 ~ieV~a~D---RpGLL~~I~~~~~~~~l~I~~A 49 (97)
.|||.-+| ++|.-+.|-.+|.++++++-+=
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K 35 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAK 35 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEE
Confidence 35555544 6889999999999999998764
No 219
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=24.02 E-value=1.4e+02 Score=23.60 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCc
Q 046242 28 RPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTT 92 (97)
Q Consensus 28 RpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~ 92 (97)
|..++.+|.+++.+.|. |||.+.| ++.+..+.+.+..+...+.+..
T Consensus 64 ~~~~~~~l~~Ac~~~GF-----------------F~l~nHG--I~~~l~~~~~~~~~~FF~LP~e 109 (360)
T PLN03178 64 REACVEAVRAAAAEWGV-----------------MHLVGHG--IPADLLDRVRKAGEAFFRLPIE 109 (360)
T ss_pred HHHHHHHHHHHHHHCCE-----------------EEEEcCC--CCHHHHHHHHHHHHHHHcCCHH
Confidence 67899999999999996 8886544 4455445555555555554433
No 220
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=23.90 E-value=1.6e+02 Score=23.45 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=34.8
Q ss_pred EEEEEEeCC------cccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCC
Q 046242 19 SLLLVETAD------RPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPT 91 (97)
Q Consensus 19 T~ieV~a~D------RpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~ 91 (97)
-+|.+...+ |..+..+|.+++.+.|. |||.+.| ++.+..+++.+..+..-+.+.
T Consensus 53 PvIDls~l~~~~~~~r~~~~~~l~~Ac~~~GF-----------------F~l~nHG--I~~~li~~~~~~~~~FF~LP~ 112 (362)
T PLN02393 53 PVIDLSSLFSDDARLRDATLRAISEACREWGF-----------------FQVVNHG--VRPELMDRAREAWREFFHLPL 112 (362)
T ss_pred CeEECccccCCChHHHHHHHHHHHHHHHHCcE-----------------EEEEeCC--CCHHHHHHHHHHHHHHHcCCH
Confidence 355555432 57799999999999996 8886444 445555555555555555443
No 221
>PRK14637 hypothetical protein; Provisional
Probab=23.47 E-value=2.8e+02 Score=19.65 Aligned_cols=60 Identities=7% Similarity=-0.077 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHhCCeEEEEEEEecCCc-eeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 28 RPGLLVDLVKIFTVINVNVESGEFDTEEL-LAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 28 RpGLL~~I~~~~~~~~l~I~~AkI~T~Ge-ra~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
-.|.-..+..++.++|+.+..-.+...|. +.--+| |+.+|. ++-+.++.+.++|...|+.
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~g-V~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGG-VGLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCC-CCHHHHHHHHHHHHHHhcc
Confidence 35788899999999999999999988775 455444 654332 7766778888888777764
No 222
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.93 E-value=1.1e+02 Score=18.69 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=19.1
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCccccCC
Q 046242 69 EAIIKPLQQVLANSLRYFLRRPTTEEASF 97 (97)
Q Consensus 69 ~~L~~~~~~~L~~~L~~~L~~~~~~~~~~ 97 (97)
.+|+++.|+.+.+-|..-..+ +|+..|
T Consensus 2 ~rL~pEDQ~~Vd~yL~a~~~~--VER~PF 28 (55)
T PF11293_consen 2 SRLNPEDQQRVDEYLQAGVNQ--VERKPF 28 (55)
T ss_pred CCCCHHHHHHHHHHHhCCCCc--cccCCc
Confidence 468888887777777766666 776654
No 223
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=22.93 E-value=76 Score=23.24 Aligned_cols=39 Identities=8% Similarity=-0.051 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCeEEEEEEEecCCcee--EEEEEEccCCCCC
Q 046242 31 LLVDLVKIFTVINVNVESGEFDTEELLA--KAKFHVSYKGEAI 71 (97)
Q Consensus 31 LL~~I~~~~~~~~l~I~~AkI~T~Gera--~DvFyVt~~g~~L 71 (97)
-|.++++.|.+.|+....+ ..+.-|. .|.|||+..|..+
T Consensus 14 ~l~~~~r~l~~~Gl~~~~~--GNiS~R~~~~~~~~ItpsG~~~ 54 (221)
T PRK06557 14 EVCKLHLELPKYGLVVWTS--GNVSARDPGTDLVVIKPSGVSY 54 (221)
T ss_pred HHHHHHHHHHHCCCccccC--ceEEEEeCCCCEEEEeCCCCCh
Confidence 3667888899999886422 1111233 3578887655543
No 224
>PRK09084 aspartate kinase III; Validated
Probab=22.92 E-value=1.9e+02 Score=23.75 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=25.3
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCeEE
Q 046242 16 PNRSLLLVETA---DRPGLLVDLVKIFTVINVNV 46 (97)
Q Consensus 16 ~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I 46 (97)
++.++|.|.+. ++||.++++-.+|.+.++.+
T Consensus 382 ~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~ 415 (448)
T PRK09084 382 EGLALVALIGNNLSKACGVAKRVFGVLEPFNIRM 415 (448)
T ss_pred CCeEEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence 46788888886 79999999999998765443
No 225
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=22.80 E-value=1.5e+02 Score=20.79 Aligned_cols=43 Identities=21% Similarity=0.253 Sum_probs=27.4
Q ss_pred ccceEEEecCCCCeEEEEEEeCCc-------ccHHHHHHHHHHhCCeEEEE
Q 046242 5 IATHISIYDDGPNRSLLLVETADR-------PGLLVDLVKIFTVINVNVES 48 (97)
Q Consensus 5 v~~~V~~~~~~~~~T~ieV~a~DR-------pGLL~~I~~~~~~~~l~I~~ 48 (97)
.||.+.+...+++.-.| .....| .|||..+|+-|.+..++|..
T Consensus 116 ~~P~f~~~~~~~~~l~l-~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~ 165 (171)
T PF07700_consen 116 KPPSFRCEEEDDNELTL-HYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEH 165 (171)
T ss_dssp S--EEEEEEEETTEEEE-EEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCeEEEEECCCCEEEE-EEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 47888887654433333 344578 57888899999887776653
No 226
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=22.58 E-value=2e+02 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCeEEEEEEeCC-c-ccHHHHHHHHHHhCCeEEEEEE
Q 046242 16 PNRSLLLVETAD-R-PGLLVDLVKIFTVINVNVESGE 50 (97)
Q Consensus 16 ~~~T~ieV~a~D-R-pGLL~~I~~~~~~~~l~I~~Ak 50 (97)
.+..++.|...+ + ||.|++|-.+|.++|++|..-.
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~ 336 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLIT 336 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 456677776543 2 7999999999999999998764
No 227
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=22.03 E-value=1.4e+02 Score=26.64 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=29.0
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEE
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
.++.++|.|... +.||.+++|-.+|.++|+++-.=
T Consensus 314 ~~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i 351 (810)
T PRK09466 314 LDDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAV 351 (810)
T ss_pred cCCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEE
Confidence 345778888765 88999999999999999998654
No 228
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=21.76 E-value=5.8e+02 Score=22.79 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCCeEEEEEEeC---CcccHHHHHHHHHHhCCeEEEEE
Q 046242 15 GPNRSLLLVETA---DRPGLLVDLVKIFTVINVNVESG 49 (97)
Q Consensus 15 ~~~~T~ieV~a~---DRpGLL~~I~~~~~~~~l~I~~A 49 (97)
..+.++|.|... +.||.+++|-..|.++|++|-.-
T Consensus 319 ~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 319 KNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred ECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 456788888644 68999999999999999999765
No 229
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=21.73 E-value=3.1e+02 Score=19.59 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHHhCCeEEEEEE--EecCCceeE-EEEEEccCCCCCChHHHHHHHH
Q 046242 28 RPGLLVDLVKIFTVINVNVESGE--FDTEELLAK-AKFHVSYKGEAIIKPLQQVLAN 81 (97)
Q Consensus 28 RpGLL~~I~~~~~~~~l~I~~Ak--I~T~Gera~-DvFyVt~~g~~L~~~~~~~L~~ 81 (97)
...++..|.+.|.+.|+.++..| |.+.|+... =-+-|+++.-.+....++.+++
T Consensus 156 ~~~~~~~i~~~l~~~gL~ln~~Kt~i~~~~~~~~~~G~~i~~~~~~~~~~~~~~i~~ 212 (214)
T cd03487 156 LDKLLEIIRSILSEEGFKINKSKTRISSKGSRQIVTGLVVNNGKPSLPRKEKRKIRA 212 (214)
T ss_pred HHHHHHHHHHHHHHCCceeCCCceEEccCCCCcEEEEEEEeCCcCCCCHHHHHHHHh
Confidence 44789999999999999999976 666665422 1111233333444444455554
No 230
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=21.21 E-value=2.5e+02 Score=18.31 Aligned_cols=61 Identities=28% Similarity=0.261 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHHhCCe------EEEEEEEec--CCce--eEEEEEEc---cCCCCCChHHHHHHHHHHHHhcC
Q 046242 26 ADRPGLLVDLVKIFTVINV------NVESGEFDT--EELL--AKAKFHVS---YKGEAIIKPLQQVLANSLRYFLR 88 (97)
Q Consensus 26 ~DRpGLL~~I~~~~~~~~l------~I~~AkI~T--~Ger--a~DvFyVt---~~g~~L~~~~~~~L~~~L~~~L~ 88 (97)
.|++.|+..|-+++.+.+. ..+.-...+ .|++ -.+.-+|+ ..|+. +++++.|-++|.++|.
T Consensus 15 ~~~~~l~~~v~~al~~~~~~p~~dik~r~~~~~~y~~~~~~~~~~fi~i~i~l~~GRs--~eqK~~l~~~i~~~l~ 88 (113)
T cd00580 15 ADIPELLRALHDALVASGLFPLGGIKVRAIRADHYRVGDGDEDDAFIHVTLRILAGRS--EEQKQELSEALLAALR 88 (113)
T ss_pred CCHHHHHHHHHHHHHhcCCCChhccEEeeEEcceEEECCCCCCCcEEEEEEEEcCCCC--HHHHHHHHHHHHHHHH
Confidence 6899999999999888772 211111122 3565 45555665 24654 6666677766666554
No 231
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=20.88 E-value=1e+02 Score=21.22 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.5
Q ss_pred CCCCChHHHHHHHHHHHHhc
Q 046242 68 GEAIIKPLQQVLANSLRYFL 87 (97)
Q Consensus 68 g~~L~~~~~~~L~~~L~~~L 87 (97)
|.=|+++++..|.++|..+|
T Consensus 121 G~fL~~~eR~~la~~L~~aL 140 (140)
T PF10003_consen 121 GRFLNPEEREELARELRRAL 140 (140)
T ss_pred ccCCCHHHHHHHHHHHHhhC
Confidence 88889999999999998875
No 232
>PLN02904 oxidoreductase
Probab=20.75 E-value=2.3e+02 Score=22.56 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=36.2
Q ss_pred eEEEEEEeC----CcccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 18 RSLLLVETA----DRPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 18 ~T~ieV~a~----DRpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
--+|++... +|..++.+|..++.+.|. |||.+.| ++.+..+.+.+..++.-+.|..|
T Consensus 52 iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GF-----------------f~v~nHG--I~~~li~~~~~~~~~FF~LP~ee 112 (357)
T PLN02904 52 LPVIDLSLLHDPLLRSCVIHEIEMACKGFGF-----------------FQVINHG--IPSSVVKDALDAATRFFDLPVDE 112 (357)
T ss_pred CCEEECcccCCchhHHHHHHHHHHHHHHCce-----------------EEEEeCC--CCHHHHHHHHHHHHHHhcCCHHH
Confidence 345555543 356689999999999997 8886544 44555555555555555544433
No 233
>PRK14638 hypothetical protein; Provisional
Probab=20.68 E-value=3.1e+02 Score=19.27 Aligned_cols=56 Identities=9% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHHHhCCeEEEEEEEecCCc-eeEEEEEEccCCCCCChHHHHHHHHHHHHhcCC
Q 046242 33 VDLVKIFTVINVNVESGEFDTEEL-LAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRR 89 (97)
Q Consensus 33 ~~I~~~~~~~~l~I~~AkI~T~Ge-ra~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~ 89 (97)
.-+..++..+|+.+........|. ++- -.||..++..++-+.++.+.+.|...|+.
T Consensus 12 ~~~~~i~~~~G~elvdve~~~~~~~~~l-rV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 12 KEAERIAEEQGLEIFDVQYRRESRGWVL-RIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 456677889999999999988764 444 44565444447766778888888888874
No 234
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=20.55 E-value=2e+02 Score=16.98 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=20.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCeEE
Q 046242 18 RSLLLVETADRPGLLVDLVKIFTVINVNV 46 (97)
Q Consensus 18 ~T~ieV~a~DRpGLL~~I~~~~~~~~l~I 46 (97)
.-.+++.+.|+ -||.+|...|..+|+.-
T Consensus 21 ~~~i~~~~~s~-~ll~~v~~lL~~lGi~~ 48 (77)
T PF14528_consen 21 SVRISISSKSK-ELLEDVQKLLLRLGIKA 48 (77)
T ss_dssp EEEEEEEES-H-HHHHHHHHHHHHTT--E
T ss_pred EEEEEEEECCH-HHHHHHHHHHHHCCCee
Confidence 45677777666 59999999999999875
No 235
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=20.34 E-value=1.7e+02 Score=18.58 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCe--EEEEEEEecCCce--eEEEEEEc
Q 046242 33 VDLVKIFTVINV--NVESGEFDTEELL--AKAKFHVS 65 (97)
Q Consensus 33 ~~I~~~~~~~~l--~I~~AkI~T~Ger--a~DvFyVt 65 (97)
-.|-++|.++|+ .+....|++.... ..|.|..+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~diss~~~~~~~aDiiVtt 41 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAVGEYKSELSGADIIIAS 41 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeehhhcccCCCCCCEEEEC
Confidence 456788999999 7788888777766 66998876
No 236
>PTZ00273 oxidase reductase; Provisional
Probab=20.34 E-value=1.7e+02 Score=22.54 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHhCCeEEEEEEEecCCceeEEEEEEccCCCCCChHHHHHHHHHHHHhcCCCCcc
Q 046242 28 RPGLLVDLVKIFTVINVNVESGEFDTEELLAKAKFHVSYKGEAIIKPLQQVLANSLRYFLRRPTTE 93 (97)
Q Consensus 28 RpGLL~~I~~~~~~~~l~I~~AkI~T~Gera~DvFyVt~~g~~L~~~~~~~L~~~L~~~L~~~~~~ 93 (97)
|.-++.+|.+++.+.|. |||.+ +.++.+..+.+.+........|..|
T Consensus 22 ~~~~~~~l~~A~~~~Gf-----------------f~v~n--hgi~~~l~~~~~~~~~~fF~lP~e~ 68 (320)
T PTZ00273 22 KMRVAKQIDEACRTWGF-----------------FYIVG--HPIPQERIEKVLKMAKTFFSLPMEE 68 (320)
T ss_pred HHHHHHHHHHHHHhCCE-----------------EEEEC--CCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 55688899999999886 88864 4555655566666656666655433
No 237
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=20.03 E-value=1.1e+02 Score=21.77 Aligned_cols=21 Identities=19% Similarity=0.501 Sum_probs=17.4
Q ss_pred CCCcccceEEEecC-CCCeEEE
Q 046242 1 VDVDIATHISIYDD-GPNRSLL 21 (97)
Q Consensus 1 ~~~~v~~~V~~~~~-~~~~T~i 21 (97)
+.+.+||.|+|.-+ ..++|+.
T Consensus 94 i~~~i~P~vRF~Ge~gEq~TlF 115 (138)
T COG3565 94 IPFHIPPKVRFKGEPGEQRTLF 115 (138)
T ss_pred CCcccCceEEecCCccceEEEE
Confidence 46889999999987 7778875
Done!