Query 046251
Match_columns 74
No_of_seqs 114 out of 1032
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 10:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02947 oxidoreductase 99.2 2.8E-11 6.1E-16 84.8 5.4 65 9-74 24-93 (374)
2 PLN02904 oxidoreductase 99.2 4.2E-11 9.2E-16 83.4 5.7 66 9-74 12-79 (357)
3 PLN02393 leucoanthocyanidin di 99.2 7.3E-11 1.6E-15 82.3 5.6 70 5-74 7-81 (362)
4 PLN02758 oxidoreductase, 2OG-F 99.1 6.5E-11 1.4E-15 82.5 5.2 65 10-74 14-82 (361)
5 PLN02216 protein SRG1 99.1 1.8E-10 3.9E-15 80.2 5.8 65 10-74 14-80 (357)
6 PLN03178 leucoanthocyanidin di 99.1 1.7E-10 3.6E-15 80.4 4.8 66 9-74 4-77 (360)
7 PLN03176 flavanone-3-hydroxyla 99.0 7.1E-10 1.5E-14 67.1 5.0 61 12-74 5-66 (120)
8 PLN02912 oxidoreductase, 2OG-F 98.9 4.2E-09 9E-14 73.2 5.1 61 12-74 7-68 (348)
9 PLN02639 oxidoreductase, 2OG-F 98.8 7.6E-09 1.6E-13 71.5 4.8 57 14-74 3-61 (337)
10 PLN02515 naringenin,2-oxogluta 98.8 7.3E-09 1.6E-13 72.3 4.3 55 20-74 11-66 (358)
11 PLN02704 flavonol synthase 98.8 1.2E-08 2.6E-13 70.5 5.1 60 11-74 4-66 (335)
12 PLN00417 oxidoreductase, 2OG-F 98.8 1.8E-08 4E-13 70.0 5.8 64 10-74 6-73 (348)
13 PLN02276 gibberellin 20-oxidas 98.7 2.8E-08 6.1E-13 69.4 3.9 51 22-74 18-70 (361)
14 PLN02750 oxidoreductase, 2OG-F 98.6 8.7E-08 1.9E-12 66.5 4.5 52 22-74 2-53 (345)
15 PLN02254 gibberellin 3-beta-di 98.4 2E-07 4.3E-12 65.2 3.3 48 20-74 26-77 (358)
16 PF14226 DIOX_N: non-haem diox 97.7 1.8E-05 3.9E-10 46.5 1.4 26 47-74 1-26 (116)
17 KOG0143 Iron/ascorbate family 97.6 6.4E-05 1.4E-09 52.1 3.4 32 43-74 14-46 (322)
18 PTZ00273 oxidase reductase; Pr 97.4 0.00011 2.4E-09 50.5 2.8 30 45-74 4-35 (320)
19 PLN02403 aminocyclopropanecarb 97.3 0.00023 4.9E-09 49.0 3.2 28 46-74 2-29 (303)
20 PLN02299 1-aminocyclopropane-1 97.3 0.00028 6E-09 48.8 3.1 29 45-74 5-33 (321)
21 PLN02485 oxidoreductase 97.1 0.00033 7.2E-09 48.3 2.5 30 45-74 6-44 (329)
22 PLN02997 flavonol synthase 96.9 0.0011 2.3E-08 46.0 3.1 27 44-74 30-56 (325)
23 COG3491 PcbC Isopenicillin N s 96.7 0.0012 2.6E-08 45.9 2.2 30 45-74 4-35 (322)
24 PLN02365 2-oxoglutarate-depend 96.1 0.0046 9.9E-08 42.3 2.5 24 45-74 4-27 (300)
25 PLN03002 oxidoreductase, 2OG-F 95.7 0.0099 2.2E-07 41.2 2.7 26 45-74 13-38 (332)
26 PLN02984 oxidoreductase, 2OG-F 95.4 0.015 3.2E-07 40.7 2.7 23 44-74 36-58 (341)
27 PLN02156 gibberellin 2-beta-di 95.3 0.021 4.5E-07 39.9 3.3 22 46-74 26-47 (335)
28 COG5488 Integral membrane prot 43.9 27 0.00058 22.3 2.4 24 49-72 136-159 (164)
29 COG0835 CheW Chemotaxis signal 35.8 9.5 0.00021 24.0 -0.5 16 43-58 63-78 (165)
30 PRK11835 hypothetical protein; 34.2 27 0.00059 21.1 1.3 53 20-72 8-65 (114)
31 PF07350 DUF1479: Protein of u 30.2 20 0.00044 26.2 0.4 26 45-70 48-73 (416)
32 PF14581 SseB_C: SseB protein 29.4 70 0.0015 18.2 2.5 24 47-74 52-75 (108)
33 PRK10612 purine-binding chemot 28.1 15 0.00033 23.0 -0.5 15 43-57 62-76 (167)
34 PF01361 Tautomerase: Tautomer 28.0 45 0.00097 16.8 1.4 25 48-72 1-27 (60)
35 PF10150 RNase_E_G: Ribonuclea 27.6 70 0.0015 21.7 2.6 27 47-73 220-246 (271)
36 PRK02289 4-oxalocrotonate taut 27.5 71 0.0015 16.3 2.1 26 48-73 2-29 (60)
37 cd00732 CheW CheW, a small reg 27.0 16 0.00035 21.6 -0.5 14 44-57 48-61 (140)
38 PF11355 DUF3157: Protein of u 26.2 27 0.00058 23.1 0.4 18 21-38 156-173 (199)
39 PF01410 COLFI: Fibrillar coll 25.2 5.5 0.00012 26.1 -3.0 13 45-57 186-198 (214)
40 PRK02220 4-oxalocrotonate taut 25.0 83 0.0018 15.8 2.1 26 47-72 1-28 (61)
41 PF09452 Mvb12: ESCRT-I subuni 24.9 35 0.00076 19.9 0.7 31 43-73 21-55 (91)
42 PF13989 YejG: YejG-like prote 24.0 1.7E+02 0.0037 17.5 3.9 53 21-73 6-63 (106)
43 smart00260 CheW Two component 23.5 19 0.0004 20.9 -0.7 14 44-57 50-63 (138)
44 TIGR03260 met_CoM_red_D methyl 23.5 56 0.0012 20.7 1.4 13 62-74 83-95 (150)
45 cd00588 CheW_like CheW-like do 22.0 21 0.00045 20.6 -0.7 16 43-58 47-62 (136)
46 PRK13600 putative ribosomal pr 21.9 96 0.0021 17.6 2.1 21 43-73 52-72 (84)
47 TIGR03360 VI_minor_1 type VI s 21.7 75 0.0016 20.8 1.8 12 62-73 173-184 (185)
48 cd00731 CheA_reg CheA regulato 21.3 23 0.00051 20.7 -0.6 14 44-57 48-61 (132)
49 cd00491 4Oxalocrotonate_Tautom 21.2 1E+02 0.0023 15.1 2.0 24 48-71 1-26 (58)
50 PF02505 MCR_D: Methyl-coenzym 21.1 65 0.0014 20.5 1.4 13 62-74 85-97 (153)
51 cd05566 PTS_IIB_galactitol PTS 20.7 1.3E+02 0.0027 16.3 2.4 26 46-71 63-88 (89)
52 PF01584 CheW: CheW-like domai 20.6 14 0.00031 21.3 -1.6 15 44-58 46-60 (138)
53 PF03698 UPF0180: Uncharacteri 20.6 1.5E+02 0.0032 16.7 2.6 23 44-70 55-77 (80)
54 COG2450 Uncharacterized conser 20.2 1.5E+02 0.0032 18.2 2.8 29 45-73 64-93 (124)
55 PRK11712 ribonuclease G; Provi 20.1 1.3E+02 0.0029 22.4 3.0 27 47-73 343-369 (489)
56 TIGR00757 RNaseEG ribonuclease 20.0 1.4E+02 0.003 21.8 3.0 27 47-73 331-357 (414)
No 1
>PLN02947 oxidoreductase
Probab=99.20 E-value=2.8e-11 Score=84.79 Aligned_cols=65 Identities=28% Similarity=0.404 Sum_probs=51.7
Q ss_pred ccccHHHHHhCCCCCCCCCcCCCCCCCCCCCC---C--CCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 9 LVPCVQEWVKNPMLVVPPRYIRPDEDSPLNSD---D--TLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 9 ~~~~v~~l~~~~~~~vP~~yi~~~~~~~~~~~---~--~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
.+.+|+.|+.++..+||++||||++++|.... . .....||||||+.|.+. .+..++++|++||++
T Consensus 24 ~~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~-~~~~~~~~l~~Ac~~ 93 (374)
T PLN02947 24 YQKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGS-NRPHVLATLAAACRE 93 (374)
T ss_pred eecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCc-cHHHHHHHHHHHHHH
Confidence 46689999999899999999999999885311 0 13346999999998653 467799999999985
No 2
>PLN02904 oxidoreductase
Probab=99.18 E-value=4.2e-11 Score=83.42 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=52.5
Q ss_pred ccccHHHHHhCCCCCCCCCcCCCCCCCCCCC-C-CCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 9 LVPCVQEWVKNPMLVVPPRYIRPDEDSPLNS-D-DTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 9 ~~~~v~~l~~~~~~~vP~~yi~~~~~~~~~~-~-~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
.+.+|+.|+.++..+||++|+++++++|... . ......||||||+.+.+.+.|..++++|++||++
T Consensus 12 ~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~ 79 (357)
T PLN02904 12 SFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKG 79 (357)
T ss_pred cccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHH
Confidence 4568999999989999999999999998531 1 1123579999999886544567789999999985
No 3
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=99.15 E-value=7.3e-11 Score=82.29 Aligned_cols=70 Identities=29% Similarity=0.486 Sum_probs=55.3
Q ss_pred CCCcccccHHHHHhCCCCCCCCCcCCCCCCCCCCC---CCCCCCCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 5 GGSLLVPCVQEWVKNPMLVVPPRYIRPDEDSPLNS---DDTLISQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 5 ~~~~~~~~v~~l~~~~~~~vP~~yi~~~~~~~~~~---~~~~~~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
+|...+..++.|+..+..++|++||+|+++++... .......||||||+.|.+++ .|.+++++|++||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~ 81 (362)
T PLN02393 7 DWPEPIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACRE 81 (362)
T ss_pred CCCCccchHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHH
Confidence 45666778999988888999999999999988531 11234579999999987654 467899999999985
No 4
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.15 E-value=6.5e-11 Score=82.55 Aligned_cols=65 Identities=34% Similarity=0.502 Sum_probs=50.6
Q ss_pred cccHHHHHhCCCCCCCCCcCCCCCCCCCCC--CCCCCCCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 10 VPCVQEWVKNPMLVVPPRYIRPDEDSPLNS--DDTLISQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 10 ~~~v~~l~~~~~~~vP~~yi~~~~~~~~~~--~~~~~~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
...++.|++++..+||++|+++.+++|... .......||||||+.|.+++ .+.+++++|++||++
T Consensus 14 ~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~ 82 (361)
T PLN02758 14 IDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEE 82 (361)
T ss_pred cccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHh
Confidence 446899998888999999999999988532 11234579999999987654 345689999999985
No 5
>PLN02216 protein SRG1
Probab=99.10 E-value=1.8e-10 Score=80.23 Aligned_cols=65 Identities=58% Similarity=0.894 Sum_probs=50.0
Q ss_pred cccHHHHHhC-CCCCCCCCcCCCCCCCCCCC-CCCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 10 VPCVQEWVKN-PMLVVPPRYIRPDEDSPLNS-DDTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 10 ~~~v~~l~~~-~~~~vP~~yi~~~~~~~~~~-~~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
++.|+.++.+ ++.+||++||+|++++|... .......||||||+.+.+++.+++++++|++||++
T Consensus 14 ~~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~ 80 (357)
T PLN02216 14 VPSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKE 80 (357)
T ss_pred chhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHH
Confidence 4669999876 78899999999999987421 11112469999999987655456799999999985
No 6
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=99.08 E-value=1.7e-10 Score=80.38 Aligned_cols=66 Identities=26% Similarity=0.460 Sum_probs=51.6
Q ss_pred ccccHHHHHhCCCCCCCCCcCCCCCCCCCCCCC------CCCCCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 9 LVPCVQEWVKNPMLVVPPRYIRPDEDSPLNSDD------TLISQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 9 ~~~~v~~l~~~~~~~vP~~yi~~~~~~~~~~~~------~~~~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
.+..++.|++.+..+||+.|++|.++++..... .....||||||+.+.+++ .|..++++|++||++
T Consensus 4 ~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~ 77 (360)
T PLN03178 4 AVPRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAE 77 (360)
T ss_pred hhhhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHH
Confidence 345689999888899999999999988753211 123469999999987655 367899999999985
No 7
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.01 E-value=7.1e-10 Score=67.15 Aligned_cols=61 Identities=15% Similarity=0.332 Sum_probs=44.7
Q ss_pred cHHHHHhCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCeeecCCCCCcc-hHHHHHHHHHHhhcC
Q 046251 12 CVQEWVKNPMLVVPPRYIRPDEDSPLNSDDTLISQIPIIDMQSLLSEE-SMDSELAKLDFACKE 74 (74)
Q Consensus 12 ~v~~l~~~~~~~vP~~yi~~~~~~~~~~~~~~~~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac~e 74 (74)
.++.|... ..+|..|+|+..++|..........||||||+.+.+++ .+.+++++|++||++
T Consensus 5 ~~~~l~~~--~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~ 66 (120)
T PLN03176 5 TLTALAEE--KTLQASFVRDEDERPKVAYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEE 66 (120)
T ss_pred HHHHHhcc--CCCCHhhcCChhhCcCccccccCCCCCeEECccccCCchHHHHHHHHHHHHHHH
Confidence 34555543 78999999999998843211223469999999987654 456789999999974
No 8
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.86 E-value=4.2e-09 Score=73.24 Aligned_cols=61 Identities=28% Similarity=0.479 Sum_probs=46.4
Q ss_pred cHHHHHhCCCCCCCCCcCCCCCCCCCCCC-CCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 12 CVQEWVKNPMLVVPPRYIRPDEDSPLNSD-DTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 12 ~v~~l~~~~~~~vP~~yi~~~~~~~~~~~-~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
-||++. +++..||+.|+++.+++|.... ......||||||+.+.+.+ +.+++++|++||++
T Consensus 7 ~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~-~~~~~~~l~~A~~~ 68 (348)
T PLN02912 7 LVSDIA-SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPN-RADIINQFAHACSS 68 (348)
T ss_pred HHHHHh-cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcC-HHHHHHHHHHHHHH
Confidence 477777 4588999999999988874221 1123469999999986544 66789999999985
No 9
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.80 E-value=7.6e-09 Score=71.55 Aligned_cols=57 Identities=21% Similarity=0.490 Sum_probs=43.3
Q ss_pred HHHHhCCC--CCCCCCcCCCCCCCCCCCCCCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 14 QEWVKNPM--LVVPPRYIRPDEDSPLNSDDTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 14 ~~l~~~~~--~~vP~~yi~~~~~~~~~~~~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
+.|+++++ .++|++||++++++|..........||||||+.. .+.+++++|++||++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~iPvIDls~~----~~~~~~~~l~~Ac~~ 61 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRLSEVSTCENVPVIDLGSP----DRAQVVQQIGDACRR 61 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccccccccCCCCCeEECCCc----cHHHHHHHHHHHHHh
Confidence 34777765 8999999999988884222223456999999863 366799999999985
No 10
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=98.79 E-value=7.3e-09 Score=72.32 Aligned_cols=55 Identities=15% Similarity=0.314 Sum_probs=41.9
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCCCCCCCeeecCCCCCcc-hHHHHHHHHHHhhcC
Q 046251 20 PMLVVPPRYIRPDEDSPLNSDDTLISQIPIIDMQSLLSEE-SMDSELAKLDFACKE 74 (74)
Q Consensus 20 ~~~~vP~~yi~~~~~~~~~~~~~~~~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac~e 74 (74)
+..+||++|+++.+++|..........||||||+.+.+++ .+.+++++|++||++
T Consensus 11 ~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~ 66 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKVAYNQFSDEIPVISLAGIDEVGGRRGEICRKIVEACED 66 (358)
T ss_pred CCCcCCHHhcCCchhccCccccccCCCCCEEEChhccCCchHHHHHHHHHHHHHHH
Confidence 4579999999999998853221223469999999986544 467799999999985
No 11
>PLN02704 flavonol synthase
Probab=98.78 E-value=1.2e-08 Score=70.51 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=45.8
Q ss_pred ccHHHHHhCC--CCCCCCCcCCCCCCCCCCCC-CCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 11 PCVQEWVKNP--MLVVPPRYIRPDEDSPLNSD-DTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 11 ~~v~~l~~~~--~~~vP~~yi~~~~~~~~~~~-~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
..++.+++.+ ..+||++|+++++++|.... ......||||||+.. .+.+++++|++||++
T Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~----~~~~~~~~l~~Ac~~ 66 (335)
T PLN02704 4 ERVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP----DEEKLTRLIAEASKE 66 (335)
T ss_pred hhHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc----cHHHHHHHHHHHHHH
Confidence 4578887754 68999999999999886422 123457999999864 245789999999985
No 12
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.77 E-value=1.8e-08 Score=70.03 Aligned_cols=64 Identities=30% Similarity=0.308 Sum_probs=46.2
Q ss_pred cccHHHHHhCCCCCCCCCcCCCCCCCCCC-C--CCCCCCCCCeeecCCCCCcc-hHHHHHHHHHHhhcC
Q 046251 10 VPCVQEWVKNPMLVVPPRYIRPDEDSPLN-S--DDTLISQIPIIDMQSLLSEE-SMDSELAKLDFACKE 74 (74)
Q Consensus 10 ~~~v~~l~~~~~~~vP~~yi~~~~~~~~~-~--~~~~~~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac~e 74 (74)
.+.|++++.++ ..||++|++|..+.+.. . .......||||||+.+.+++ .++.++++|++||++
T Consensus 6 ~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~ 73 (348)
T PLN00417 6 FKTVQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALST 73 (348)
T ss_pred chhHHHHHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHH
Confidence 35688988764 68999999999886421 1 11133479999999887654 344567999999985
No 13
>PLN02276 gibberellin 20-oxidase
Probab=98.65 E-value=2.8e-08 Score=69.36 Aligned_cols=51 Identities=25% Similarity=0.491 Sum_probs=40.3
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 22 LVVPPRYIRPDEDSPLNSDDTLISQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 22 ~~vP~~yi~~~~~~~~~~~~~~~~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
.+||+.|+++.+++|... .....||||||+.+.+++ .+.+++++|++||++
T Consensus 18 ~~vp~~~~~~~~~~p~~~--~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~ 70 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSAA--VPELAVPLIDLGGFLSGDEAATAEAARLVREACLK 70 (361)
T ss_pred CCCCHHhcCCccccCCCC--CcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHH
Confidence 579999999999987521 123579999999987654 466799999999985
No 14
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=98.57 E-value=8.7e-08 Score=66.48 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=39.0
Q ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 22 LVVPPRYIRPDEDSPLNSDDTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 22 ~~vP~~yi~~~~~~~~~~~~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
.++|..|+++.+++|..........||||||+.+.+. .+.+++++|++||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~-~~~~~~~~l~~Ac~~ 53 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKFHLTNSDEEIPVIDLSVSTSH-DKTEVASKIGEACKK 53 (345)
T ss_pred CCCCHHHcCCchhccCccccccCCCCCeEECCCCCcc-cHHHHHHHHHHHHHh
Confidence 4799999999999885321112347999999986333 467789999999985
No 15
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=98.43 E-value=2e-07 Score=65.20 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCCCCCCCcCCCCCCC--CCCC--CCCCCCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 20 PMLVVPPRYIRPDEDS--PLNS--DDTLISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 20 ~~~~vP~~yi~~~~~~--~~~~--~~~~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
...+||++||||++++ |... .......||||||+.. .++++|++||++
T Consensus 26 ~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~-------~~~~~l~~Ac~~ 77 (358)
T PLN02254 26 SLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP-------NALTLIGHACET 77 (358)
T ss_pred hhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH-------HHHHHHHHHHHH
Confidence 3458999999999998 3211 1122357999999742 478999999985
No 16
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.69 E-value=1.8e-05 Score=46.47 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=19.8
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
||||||+. ....+..++++|++||++
T Consensus 1 iPvIDls~--~~~~~~~~~~~l~~A~~~ 26 (116)
T PF14226_consen 1 IPVIDLSP--DPADREEVAEQLRDACEE 26 (116)
T ss_dssp --EEEHGG--CHHHHHHHHHHHHHHHHH
T ss_pred CCeEECCC--CCccHHHHHHHHHHHHHh
Confidence 79999997 233578899999999974
No 17
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=97.61 E-value=6.4e-05 Score=52.10 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=25.6
Q ss_pred CCCCCCeeecCCCCCcc-hHHHHHHHHHHhhcC
Q 046251 43 LISQIPIIDMQSLLSEE-SMDSELAKLDFACKE 74 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac~e 74 (74)
....||||||+.+.+.+ .+..++++|++||++
T Consensus 14 ~~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~ 46 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDPGREEVVEKLREACEE 46 (322)
T ss_pred cCCCcCeEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 34679999999875544 377889999999985
No 18
>PTZ00273 oxidase reductase; Provisional
Probab=97.45 E-value=0.00011 Score=50.50 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=24.6
Q ss_pred CCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
..||||||+.+.+++ .+.+++++|++||++
T Consensus 4 ~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~ 35 (320)
T PTZ00273 4 ASLPVIDVSPLFGGESAEKMRVAKQIDEACRT 35 (320)
T ss_pred CCCCEEecHHhcCCChHHHHHHHHHHHHHHHh
Confidence 369999999987655 456789999999985
No 19
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=97.32 E-value=0.00023 Score=48.96 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=23.2
Q ss_pred CCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 46 QIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 46 ~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
.||||||+.+.+ ..+++++++|++||++
T Consensus 2 ~iPvIDls~~~~-~~~~~~~~~l~~Ac~~ 29 (303)
T PLN02403 2 EIPVIDFDQLDG-EKRSKTMSLLHQACEK 29 (303)
T ss_pred CCCeEeCccCCc-ccHHHHHHHHHHHHHh
Confidence 599999998854 3467799999999985
No 20
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=97.26 E-value=0.00028 Score=48.81 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=23.6
Q ss_pred CCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
..||||||+.+.+. .+.+++++|++||++
T Consensus 5 ~~iPvIDls~~~~~-~~~~~~~~l~~A~~~ 33 (321)
T PLN02299 5 ESFPVIDMEKLNGE-ERAATMELIKDACEN 33 (321)
T ss_pred CCCCEEECcCCCcc-cHHHHHHHHHHHHHh
Confidence 35999999988543 466789999999985
No 21
>PLN02485 oxidoreductase
Probab=97.14 E-value=0.00033 Score=48.33 Aligned_cols=30 Identities=30% Similarity=0.723 Sum_probs=23.4
Q ss_pred CCCCeeecCCCCCc--------c-hHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSE--------E-SMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~--------~-~~~~~v~~i~~Ac~e 74 (74)
..||||||+.|.++ + .+.+++++|++||++
T Consensus 6 ~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~ 44 (329)
T PLN02485 6 KSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRD 44 (329)
T ss_pred CCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHH
Confidence 46999999998632 1 355789999999985
No 22
>PLN02997 flavonol synthase
Probab=96.86 E-value=0.0011 Score=45.99 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.0
Q ss_pred CCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 44 ISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 44 ~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
...||||||+.+ .++.++++|++||++
T Consensus 30 ~~~IPvIDls~~----~~~~~~~~l~~Ac~~ 56 (325)
T PLN02997 30 AVDVPVVDLSVS----DEDFLVREVVKASEE 56 (325)
T ss_pred CCCCCeEECCCC----CHHHHHHHHHHHHHH
Confidence 457999999875 245789999999985
No 23
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=96.69 E-value=0.0012 Score=45.92 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=25.7
Q ss_pred CCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
..||+|||+.+.+++ .|.+++++|++||++
T Consensus 4 ~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~ 35 (322)
T COG3491 4 RDLPIIDLSELAGSDPGARRRVAQELRAACRE 35 (322)
T ss_pred CcCceeccHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 469999999997755 678899999999985
No 24
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=96.12 E-value=0.0046 Score=42.32 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=19.1
Q ss_pred CCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
..||||||+.+. ..+++|++||++
T Consensus 4 ~~iPvIDls~~~------~~~~~l~~Ac~~ 27 (300)
T PLN02365 4 VNIPTIDLEEFP------GQIEKLREACER 27 (300)
T ss_pred CCCCEEEChhhH------HHHHHHHHHHHH
Confidence 459999999861 246999999985
No 25
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.69 E-value=0.0099 Score=41.24 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=20.6
Q ss_pred CCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
..||+|||+.. .+..++++|++||++
T Consensus 13 ~~iP~IDl~~~----~~~~~~~~l~~Ac~~ 38 (332)
T PLN03002 13 SSLNCIDLAND----DLNHSVASLKQACLD 38 (332)
T ss_pred CCCCEEeCCch----hHHHHHHHHHHHHHh
Confidence 36999999842 345689999999985
No 26
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.40 E-value=0.015 Score=40.69 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=18.4
Q ss_pred CCCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 44 ISQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 44 ~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
...||||||+.+ .+++|++||++
T Consensus 36 ~~~IPvIDls~~--------~~~~l~~A~~~ 58 (341)
T PLN02984 36 DIDIPVIDMECL--------DMEKLREACKD 58 (341)
T ss_pred cCCCCeEeCcHH--------HHHHHHHHHHh
Confidence 456999999864 35899999985
No 27
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=95.35 E-value=0.021 Score=39.86 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=17.2
Q ss_pred CCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 46 QIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 46 ~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
.||||||+.. .+.++|++||++
T Consensus 26 ~iPvIDls~~-------~~~~~l~~Ac~~ 47 (335)
T PLN02156 26 LIPVIDLTDS-------DAKTQIVKACEE 47 (335)
T ss_pred CCCcccCCCh-------HHHHHHHHHHHH
Confidence 5999999741 246799999985
No 28
>COG5488 Integral membrane protein [Function unknown]
Probab=43.94 E-value=27 Score=22.34 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.1
Q ss_pred eeecCCCCCcchHHHHHHHHHHhh
Q 046251 49 IIDMQSLLSEESMDSELAKLDFAC 72 (74)
Q Consensus 49 vIDLs~l~~~~~~~~~v~~i~~Ac 72 (74)
++|+..++++|+|++...++.+|.
T Consensus 136 ~~~ig~fL~Pd~Re~fa~af~~aL 159 (164)
T COG5488 136 VVDIGRFLNPDDRESFAAAFSRAL 159 (164)
T ss_pred eeehhcccChHHHHHHHHHHHHHH
Confidence 689999999998888888887774
No 29
>COG0835 CheW Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.75 E-value=9.5 Score=23.97 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=11.7
Q ss_pred CCCCCCeeecCCCCCc
Q 046251 43 LISQIPIIDMQSLLSE 58 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~~ 58 (74)
-+.-||||||..+.+.
T Consensus 63 RG~iipvIDL~~~lg~ 78 (165)
T COG0835 63 RGEIIPVIDLRKRLGL 78 (165)
T ss_pred CCceEEEEEHHHHhCC
Confidence 3456999999876553
No 30
>PRK11835 hypothetical protein; Provisional
Probab=34.15 E-value=27 Score=21.06 Aligned_cols=53 Identities=15% Similarity=0.094 Sum_probs=29.5
Q ss_pred CCCCCCCCcCCCCCCCCCC----CCCCCCCCCCeeecCCCCCcc-hHHHHHHHHHHhh
Q 046251 20 PMLVVPPRYIRPDEDSPLN----SDDTLISQIPIIDMQSLLSEE-SMDSELAKLDFAC 72 (74)
Q Consensus 20 ~~~~vP~~yi~~~~~~~~~----~~~~~~~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac 72 (74)
.+.++|++|-|-...--.. ..+....+=-.|=|..|...+ ..-.++++|..+-
T Consensus 8 VVHRLPQsYRW~sG~~G~kVEpip~~~~~~dn~LigLkLLShdg~~aw~vm~~L~~sL 65 (114)
T PRK11835 8 VVHRLPQSYRWSAGFAGSKVEPIPQNGADGDNSLIGLKLLSHDGDNAWSVMQKLSQAL 65 (114)
T ss_pred EEEecCcceeeccCccCceeeeccCCCCCCccceEEEEeecCCChhHHHHHHHHHHHH
Confidence 3568999999987643321 111222222577776654333 2335777777664
No 31
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=30.23 E-value=20 Score=26.18 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=15.0
Q ss_pred CCCCeeecCCCCCcchHHHHHHHHHH
Q 046251 45 SQIPIIDMQSLLSEESMDSELAKLDF 70 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~~~~~~v~~i~~ 70 (74)
.-||.||++.+.++...++.+++|++
T Consensus 48 ~~IP~i~f~di~~~~~~~~~~~~ir~ 73 (416)
T PF07350_consen 48 SIIPEIDFADIENGGVSEEFLAEIRR 73 (416)
T ss_dssp -SS-EEEHHHHHCT---HHHHHHHHH
T ss_pred CCCceeeHHHHhCCCCCHHHHHHHHh
Confidence 35999999998665323455666654
No 32
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=29.42 E-value=70 Score=18.23 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=17.7
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
+=+||+.+ ++..++.++|+++|++
T Consensus 52 li~vd~~~----~~~~~~~~~i~~~~~~ 75 (108)
T PF14581_consen 52 LIGVDFDG----EDIEEIFQEIGRAARP 75 (108)
T ss_pred EEEEeccC----hhHHHHHHHHHHHhhh
Confidence 44888865 2356789999999863
No 33
>PRK10612 purine-binding chemotaxis protein; Provisional
Probab=28.14 E-value=15 Score=22.98 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.0
Q ss_pred CCCCCCeeecCCCCC
Q 046251 43 LISQIPIIDMQSLLS 57 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~ 57 (74)
.+.-+|||||+.+++
T Consensus 62 RG~iipViDL~~~lg 76 (167)
T PRK10612 62 RGVIVPIVDLRIKFS 76 (167)
T ss_pred CCcEEEEEEHHHHhC
Confidence 345699999987654
No 34
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=27.97 E-value=45 Score=16.83 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=12.8
Q ss_pred CeeecCCCCCcc--hHHHHHHHHHHhh
Q 046251 48 PIIDMQSLLSEE--SMDSELAKLDFAC 72 (74)
Q Consensus 48 PvIDLs~l~~~~--~~~~~v~~i~~Ac 72 (74)
|+|.+....+.+ ...+.+++|-++.
T Consensus 1 P~I~i~~~~g~~~e~K~~l~~~it~~~ 27 (60)
T PF01361_consen 1 PFITIKIPEGRTAEQKRELAEAITDAV 27 (60)
T ss_dssp -EEEEEEESTS-HHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 677775553333 3445666666554
No 35
>PF10150 RNase_E_G: Ribonuclease E/G family; InterPro: IPR019307 Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs []. RNA-binding protein AU-1 binds to RNA loop regions that are with AU-rich sequences [].; PDB: 2BX2_L 2VRT_D 2VMK_D 2C4R_L 1SMX_B 1SLJ_A 2C0B_L 1SN8_B.
Probab=27.55 E-value=70 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=17.5
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhc
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACK 73 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~ 73 (74)
|=||||=.+.+..++.++++.+.++++
T Consensus 220 iIviDfi~m~~~~~~~~l~~~~~~~~~ 246 (271)
T PF10150_consen 220 IIVIDFIDMKDKKDREKLLEALKEALK 246 (271)
T ss_dssp EEEEE----SSHHHHHHHHHHHHHHTT
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 569999777555567788888888875
No 36
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=27.48 E-value=71 Score=16.30 Aligned_cols=26 Identities=4% Similarity=0.126 Sum_probs=15.1
Q ss_pred CeeecCCCCCcc--hHHHHHHHHHHhhc
Q 046251 48 PIIDMQSLLSEE--SMDSELAKLDFACK 73 (74)
Q Consensus 48 PvIDLs~l~~~~--~~~~~v~~i~~Ac~ 73 (74)
|+|.+..+.+-+ .+.++++.|-+|..
T Consensus 2 P~i~i~~~~Grs~EqK~~L~~~it~a~~ 29 (60)
T PRK02289 2 PFVRIDLFEGRSQEQKNALAREVTEVVS 29 (60)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 677765553322 45566777766653
No 37
>cd00732 CheW CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together with CheA and the methyl-accepting chemotaxis proteins (MCPs), which are involved in response modulation.
Probab=27.03 E-value=16 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.0
Q ss_pred CCCCCeeecCCCCC
Q 046251 44 ISQIPIIDMQSLLS 57 (74)
Q Consensus 44 ~~~iPvIDLs~l~~ 57 (74)
+..+|||||+.+.+
T Consensus 48 g~~ipvvdl~~~lg 61 (140)
T cd00732 48 GRIVPVIDLRKRLG 61 (140)
T ss_pred CcEEEEEehHHHcC
Confidence 45699999988754
No 38
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.18 E-value=27 Score=23.11 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=15.4
Q ss_pred CCCCCCCcCCCCCCCCCC
Q 046251 21 MLVVPPRYIRPDEDSPLN 38 (74)
Q Consensus 21 ~~~vP~~yi~~~~~~~~~ 38 (74)
+.++|+.|+||...+...
T Consensus 156 IkRMpdTYLR~~q~~~gk 173 (199)
T PF11355_consen 156 IKRMPDTYLRPGQQRQGK 173 (199)
T ss_pred hhhChhhccCcccccCCc
Confidence 789999999998887653
No 39
>PF01410 COLFI: Fibrillar collagen C-terminal domain; InterPro: IPR000885 Collagens contain a large number of globular domains in between the regions of triple helical repeats IPR008160 from INTERPRO. These domains are involved in binding diverse substrates. One of these domains is found at the C terminus of fibrillar collagens. The exact function of this domain is unknown.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen
Probab=25.15 E-value=5.5 Score=26.14 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=9.9
Q ss_pred CCCCeeecCCCCC
Q 046251 45 SQIPIIDMQSLLS 57 (74)
Q Consensus 45 ~~iPvIDLs~l~~ 57 (74)
..+||+|++.+..
T Consensus 186 ~~LPIvDv~~~d~ 198 (214)
T PF01410_consen 186 SRLPIVDVAPFDI 198 (214)
T ss_pred cccCeeeeEccCC
Confidence 3599999987643
No 40
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.01 E-value=83 Score=15.76 Aligned_cols=26 Identities=8% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCeeecCCCCCcc--hHHHHHHHHHHhh
Q 046251 47 IPIIDMQSLLSEE--SMDSELAKLDFAC 72 (74)
Q Consensus 47 iPvIDLs~l~~~~--~~~~~v~~i~~Ac 72 (74)
.|+|.+..+.+-+ ...+.++.|.++.
T Consensus 1 MP~i~i~~~~Grs~eqk~~l~~~it~~l 28 (61)
T PRK02220 1 MPYVHIKLIEGRTEEQLKALVKDVTAAV 28 (61)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3777775443322 3445666666654
No 41
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=24.93 E-value=35 Score=19.86 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=11.8
Q ss_pred CCCCCCeeecCCCCCcc----hHHHHHHHHHHhhc
Q 046251 43 LISQIPIIDMQSLLSEE----SMDSELAKLDFACK 73 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~~~----~~~~~v~~i~~Ac~ 73 (74)
....+|.|.|..+.... ..-+++++|.++|+
T Consensus 21 ~kl~~P~~~l~~~~~t~em~~~W~~ECd~i~~~~~ 55 (91)
T PF09452_consen 21 PKLTVPEIKLPPLQPTKEMFQPWYEECDQIVESCE 55 (91)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCccccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 44579999998764222 23468899999996
No 42
>PF13989 YejG: YejG-like protein
Probab=23.99 E-value=1.7e+02 Score=17.45 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=28.7
Q ss_pred CCCCCCCcCCCCCCCCCCC----CCCCCCCCCeeecCCCCCcc-hHHHHHHHHHHhhc
Q 046251 21 MLVVPPRYIRPDEDSPLNS----DDTLISQIPIIDMQSLLSEE-SMDSELAKLDFACK 73 (74)
Q Consensus 21 ~~~vP~~yi~~~~~~~~~~----~~~~~~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac~ 73 (74)
+.++|+.|-|-...--... .+....+=-.|=|..|...+ ..-.++++|..+-.
T Consensus 6 VHRLPqsYRWlsG~~G~kVEp~p~~~~~~~n~LigLkLLShdg~~aw~im~~L~~sL~ 63 (106)
T PF13989_consen 6 VHRLPQSYRWLSGFAGVKVEPIPLNDADEDNDLIGLKLLSHDGESAWQIMQQLSQSLA 63 (106)
T ss_pred EeeCCccceeccCCcCceeeecCCcCcCcccceEEEEeeCCCChHHHHHHHHHHHHHH
Confidence 4689999999766543211 11122223366675554332 23357777776643
No 43
>smart00260 CheW Two component signalling adaptor domain.
Probab=23.51 E-value=19 Score=20.93 Aligned_cols=14 Identities=29% Similarity=0.667 Sum_probs=10.8
Q ss_pred CCCCCeeecCCCCC
Q 046251 44 ISQIPIIDMQSLLS 57 (74)
Q Consensus 44 ~~~iPvIDLs~l~~ 57 (74)
+..+|||||+.+.+
T Consensus 50 g~~ipvvdl~~~l~ 63 (138)
T smart00260 50 GEVLPVVDLRRLLG 63 (138)
T ss_pred CeEEEEEEHHHHhC
Confidence 44599999987754
No 44
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=23.49 E-value=56 Score=20.71 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhcC
Q 046251 62 DSELAKLDFACKE 74 (74)
Q Consensus 62 ~~~v~~i~~Ac~e 74 (74)
+.++++|.+||++
T Consensus 83 ~~~i~~I~eiC~e 95 (150)
T TIGR03260 83 EDIVEEIEEICKE 95 (150)
T ss_pred HHHHHHHHHHHHh
Confidence 4689999999985
No 45
>cd00588 CheW_like CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in the chemotaxis associated histidine kinase CheA binds to CheW, suggesting that these domains can interact with each other.
Probab=22.04 E-value=21 Score=20.62 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=11.8
Q ss_pred CCCCCCeeecCCCCCc
Q 046251 43 LISQIPIIDMQSLLSE 58 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~~ 58 (74)
.+..+|+|||+.+.+.
T Consensus 47 rg~~ipvvdL~~~l~~ 62 (136)
T cd00588 47 RGEILPVIDLRRLFGL 62 (136)
T ss_pred CCcEEEEEEHHHHcCC
Confidence 3456999999887653
No 46
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=21.87 E-value=96 Score=17.55 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=14.9
Q ss_pred CCCCCCeeecCCCCCcchHHHHHHHHHHhhc
Q 046251 43 LISQIPIIDMQSLLSEESMDSELAKLDFACK 73 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~ 73 (74)
.+..||++-... .++|++||-
T Consensus 52 eek~Ip~v~V~s----------~~~LGkAcg 72 (84)
T PRK13600 52 NQKNIPVSFFKS----------KHALGKHVG 72 (84)
T ss_pred HHcCCCEEEECC----------HHHHHHHhC
Confidence 345699998853 566888883
No 47
>TIGR03360 VI_minor_1 type VI secretion-associated protein, VC_A0118 family. Members of this protein family, including VC_A0118 from Vibrio cholerae El Tor N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family. This lack suggests that members of this family may be targets rather than components of the type VI secretion system.
Probab=21.72 E-value=75 Score=20.75 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhc
Q 046251 62 DSELAKLDFACK 73 (74)
Q Consensus 62 ~~~v~~i~~Ac~ 73 (74)
.++++-|++||.
T Consensus 173 ~~ai~PLR~aC~ 184 (185)
T TIGR03360 173 NEALDPLRQQCH 184 (185)
T ss_pred HHHHHHHHHhcC
Confidence 468999999995
No 48
>cd00731 CheA_reg CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling mechanism is modulated by the methyl accepting chemotaxis proteins (MCPs). MCPs form a highly interconnected, tightly packed array within the membrane that is organized, at least in part, through interactions with CheW and CheA. The CheA regulatory domain belongs to the family of CheW_like proteins and has been proposed to mediate interaction with the kinase regulator CheW.
Probab=21.32 E-value=23 Score=20.72 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=10.9
Q ss_pred CCCCCeeecCCCCC
Q 046251 44 ISQIPIIDMQSLLS 57 (74)
Q Consensus 44 ~~~iPvIDLs~l~~ 57 (74)
+..+|+|||+.+.+
T Consensus 48 g~~ipvidL~~~l~ 61 (132)
T cd00731 48 GELLPLVRLGELFN 61 (132)
T ss_pred CeEEEEEEHHHHhC
Confidence 44699999988754
No 49
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=21.23 E-value=1e+02 Score=15.06 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=12.2
Q ss_pred CeeecCCCCCcc--hHHHHHHHHHHh
Q 046251 48 PIIDMQSLLSEE--SMDSELAKLDFA 71 (74)
Q Consensus 48 PvIDLs~l~~~~--~~~~~v~~i~~A 71 (74)
|+|.+..+.+.+ ...+.++.|.++
T Consensus 1 P~i~i~~~~grt~eqk~~l~~~i~~~ 26 (58)
T cd00491 1 PFVQIYILEGRTDEQKRELIERVTEA 26 (58)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 666665443322 344555555554
No 50
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=21.15 E-value=65 Score=20.48 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhcC
Q 046251 62 DSELAKLDFACKE 74 (74)
Q Consensus 62 ~~~v~~i~~Ac~e 74 (74)
+.++++|.+||++
T Consensus 85 ~~~ie~I~~iCee 97 (153)
T PF02505_consen 85 EDVIEKIREICEE 97 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999985
No 51
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=20.69 E-value=1.3e+02 Score=16.27 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=18.6
Q ss_pred CCCeeecCCCCCcchHHHHHHHHHHh
Q 046251 46 QIPIIDMQSLLSEESMDSELAKLDFA 71 (74)
Q Consensus 46 ~iPvIDLs~l~~~~~~~~~v~~i~~A 71 (74)
.+|+|-.+.|.+..+.++..++|.++
T Consensus 63 ~~p~i~v~~~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 63 GIPVINGLPFLTGIGEDKVYEEILEA 88 (89)
T ss_pred CCCEEEEeeccccCChHHHHHHHHHh
Confidence 68999998887665566666666543
No 52
>PF01584 CheW: CheW-like domain; InterPro: IPR002545 CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flagellar rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA [] binds to CheW, suggesting that these domains can interact with each other.; GO: 0004871 signal transducer activity, 0006935 chemotaxis, 0007165 signal transduction, 0005622 intracellular; PDB: 2HO9_A 2CH4_A 1B3Q_A 3UR1_A 1K0S_A 2QDL_B.
Probab=20.62 E-value=14 Score=21.31 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=11.0
Q ss_pred CCCCCeeecCCCCCc
Q 046251 44 ISQIPIIDMQSLLSE 58 (74)
Q Consensus 44 ~~~iPvIDLs~l~~~ 58 (74)
+..+|||||+.+.+.
T Consensus 46 g~~ipvidL~~~l~~ 60 (138)
T PF01584_consen 46 GEIIPVIDLARLLGL 60 (138)
T ss_dssp TEEEEEEEHHHHHTS
T ss_pred CcEEEhhhHHHhhCC
Confidence 446999999876543
No 53
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.61 E-value=1.5e+02 Score=16.72 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=15.6
Q ss_pred CCCCCeeecCCCCCcchHHHHHHHHHH
Q 046251 44 ISQIPIIDMQSLLSEESMDSELAKLDF 70 (74)
Q Consensus 44 ~~~iPvIDLs~l~~~~~~~~~v~~i~~ 70 (74)
....|||+-+++. .++++++|.+
T Consensus 55 ~~~~pVInA~G~T----~eEI~~~v~~ 77 (80)
T PF03698_consen 55 STKVPVINASGLT----AEEIVQEVEE 77 (80)
T ss_pred ccCceEEecCCCC----HHHHHHHHHH
Confidence 3458999998863 3456666654
No 54
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=20.24 E-value=1.5e+02 Score=18.23 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCCCeeecCCCCCcc-hHHHHHHHHHHhhc
Q 046251 45 SQIPIIDMQSLLSEE-SMDSELAKLDFACK 73 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~-~~~~~v~~i~~Ac~ 73 (74)
..|=+.|++.|...+ ...+++++++.-.+
T Consensus 64 GNIvIaDit~l~~d~~~~~~V~e~lr~~a~ 93 (124)
T COG2450 64 GNIVIADITPLERDDDLFERVIEELRDTAE 93 (124)
T ss_pred CCEEEEEcCCcccChhHHHHHHHHHHHHHH
Confidence 358899999997433 56678888877554
No 55
>PRK11712 ribonuclease G; Provisional
Probab=20.15 E-value=1.3e+02 Score=22.41 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=21.2
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhc
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACK 73 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~ 73 (74)
|=||||=.+.+..++.++++.|.+|.+
T Consensus 343 iIviDFidM~~~~~r~~v~~~l~~~l~ 369 (489)
T PRK11712 343 IIIIDFIDMNNEDHRRRVLHSLEQALS 369 (489)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhh
Confidence 669999887655567788999988875
No 56
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=20.04 E-value=1.4e+02 Score=21.78 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=20.6
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhc
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACK 73 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~ 73 (74)
|=||||=.+.+..++.++++.|.++++
T Consensus 331 iIvIDFIdM~~~~~~~~v~~~l~~~~~ 357 (414)
T TIGR00757 331 IIIIDFIDMKSEKNQRRVLERLKEALR 357 (414)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 569999877655567778888888875
Done!