Query 046251
Match_columns 74
No_of_seqs 114 out of 1032
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:47:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 99.2 6.7E-12 2.3E-16 86.0 2.8 66 9-74 3-76 (356)
2 1odm_A Isopenicillin N synthas 97.7 3.4E-05 1.2E-09 52.2 3.6 30 45-74 7-38 (331)
3 1w9y_A 1-aminocyclopropane-1-c 97.3 8.7E-05 3E-09 50.1 2.1 28 46-74 3-30 (319)
4 3oox_A Putative 2OG-Fe(II) oxy 97.0 9.5E-05 3.3E-09 49.6 -0.3 28 45-74 5-32 (312)
5 1dcs_A Deacetoxycephalosporin 96.1 0.00086 2.9E-08 44.9 -0.2 26 45-74 3-28 (311)
6 3on7_A Oxidoreductase, iron/as 80.3 1.4 4.9E-05 28.8 3.0 11 45-55 2-12 (280)
7 2p22_D Hypothetical 12.0 kDa p 41.2 16 0.00053 20.0 1.8 31 43-73 26-60 (79)
8 3ur1_B Chemotaxis protein CHEW 32.1 11 0.00038 21.6 0.3 14 44-57 49-62 (139)
9 4f87_A Plycb; lysin, bacteriop 29.9 45 0.0015 17.1 2.3 20 46-73 52-71 (72)
10 1dj8_A HDEA, protein HNS-depen 29.7 14 0.00047 20.5 0.4 22 47-74 47-68 (89)
11 2bx2_L Ribonuclease E, RNAse E 23.5 66 0.0023 23.1 3.1 27 47-73 349-375 (517)
12 2bpt_B Nucleoporin NUP1; nucle 23.2 23 0.00078 16.2 0.4 13 46-58 8-20 (39)
13 4dgh_A Sulfate permease family 22.8 1E+02 0.0036 16.9 3.4 26 47-72 51-77 (130)
14 3oa3_A Aldolase; structural ge 21.1 26 0.00087 23.4 0.5 25 49-73 146-172 (288)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=99.19 E-value=6.7e-12 Score=86.05 Aligned_cols=66 Identities=26% Similarity=0.429 Sum_probs=51.3
Q ss_pred ccccHHHHHhCCCCCCCCCcCCCCCCCCCCCC---CC---CCCCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 9 LVPCVQEWVKNPMLVVPPRYIRPDEDSPLNSD---DT---LISQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 9 ~~~~v~~l~~~~~~~vP~~yi~~~~~~~~~~~---~~---~~~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
++.+||+|+++++.+||++|+||.++++.... .. ....||||||+.|.+++ .|.+++++|++||++
T Consensus 3 ~~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~ 76 (356)
T 1gp6_A 3 AVERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 76 (356)
T ss_dssp CCCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHh
Confidence 35679999998889999999999888775321 00 12369999999987644 467799999999974
No 2
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=97.66 E-value=3.4e-05 Score=52.17 Aligned_cols=30 Identities=20% Similarity=0.455 Sum_probs=24.9
Q ss_pred CCCCeeecCCCCCcc--hHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEE--SMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~--~~~~~v~~i~~Ac~e 74 (74)
..||||||+.|.+++ .+..++++|++||++
T Consensus 7 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~ 38 (331)
T 1odm_A 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRD 38 (331)
T ss_dssp CCCCEEECGGGGSSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEchHhcCCChHHHHHHHHHHHHHHHh
Confidence 469999999986654 466799999999985
No 3
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=97.31 E-value=8.7e-05 Score=50.06 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 46 QIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 46 ~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
.||||||+.|.+ ..+..++++|++||++
T Consensus 3 ~iPvIDls~l~~-~~~~~~~~~l~~A~~~ 30 (319)
T 1w9y_A 3 NFPIISLDKVNG-VERAATMEMIKDACEN 30 (319)
T ss_dssp CCCEEEGGGGGS-TTHHHHHHHHHHHHHH
T ss_pred CCCEEECcccCc-ccHHHHHHHHHHHHHh
Confidence 599999999853 3477899999999974
No 4
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=97.00 E-value=9.5e-05 Score=49.55 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=22.8
Q ss_pred CCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
..||||||+.|.+ .+.+++++|++||++
T Consensus 5 ~~iPvIDls~~~~--~~~~~~~~l~~A~~~ 32 (312)
T 3oox_A 5 SAIDPVSFSLYAK--DFTRFAQELGASFER 32 (312)
T ss_dssp CSSCCEETHHHHH--CHHHHHHHHHHHHHH
T ss_pred CCCCeEEChHhcc--cHHHHHHHHHHHHHh
Confidence 3599999998743 467899999999974
No 5
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=96.10 E-value=0.00086 Score=44.95 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=19.1
Q ss_pred CCCCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 45 SQIPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 45 ~~iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
..||||||+.|.+++.. ++|++||++
T Consensus 3 ~~iPvIDls~l~~~~~~----~~l~~A~~~ 28 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLHQ----DEFRRCLRD 28 (311)
T ss_dssp CCCCEEEHHHHHTTCSH----HHHHHHHHH
T ss_pred CCCcEEEchhhcCCCHH----HHHHHHHHh
Confidence 35999999987554422 289999974
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=80.30 E-value=1.4 Score=28.78 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.9
Q ss_pred CCCCeeecCCC
Q 046251 45 SQIPIIDMQSL 55 (74)
Q Consensus 45 ~~iPvIDLs~l 55 (74)
+.||||||+..
T Consensus 2 ~~IPvIDls~~ 12 (280)
T 3on7_A 2 MKLETIDYRAA 12 (280)
T ss_dssp --CCEEETTST
T ss_pred CCCCEEECCCh
Confidence 36999999863
No 7
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=41.22 E-value=16 Score=19.96 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCCCCCeeecCCCCCcc----hHHHHHHHHHHhhc
Q 046251 43 LISQIPIIDMQSLLSEE----SMDSELAKLDFACK 73 (74)
Q Consensus 43 ~~~~iPvIDLs~l~~~~----~~~~~v~~i~~Ac~ 73 (74)
....+|.|+|..+...+ ..-+++++|.++|+
T Consensus 26 ~Kl~lp~l~lp~~~~a~~~~~pWy~EC~~I~~~~~ 60 (79)
T 2p22_D 26 TRFQMPEFKLPALQPTRDLLCPWYEECDNITKVCQ 60 (79)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44568888886653222 23467888988886
No 8
>3ur1_B Chemotaxis protein CHEW; chemoreceptor arrays, immune system; 4.50A {Thermotoga maritima} PDB: 1k0s_A 2ch4_W*
Probab=32.11 E-value=11 Score=21.56 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.1
Q ss_pred CCCCCeeecCCCCC
Q 046251 44 ISQIPIIDMQSLLS 57 (74)
Q Consensus 44 ~~~iPvIDLs~l~~ 57 (74)
+.-+|+|||..+.+
T Consensus 49 G~~ipvidL~~~lg 62 (139)
T 3ur1_B 49 GRIIPVVNLAKILG 62 (139)
T ss_dssp TEEEEEECGGGTTT
T ss_pred CcEEEEEEHHHHhC
Confidence 34599999988765
No 9
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=29.89 E-value=45 Score=17.14 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=13.7
Q ss_pred CCCeeecCCCCCcchHHHHHHHHHHhhc
Q 046251 46 QIPIIDMQSLLSEESMDSELAKLDFACK 73 (74)
Q Consensus 46 ~iPvIDLs~l~~~~~~~~~v~~i~~Ac~ 73 (74)
-||-|+++. +| ++.|++|-+
T Consensus 52 iipsinisk---sd-----veairkamk 71 (72)
T 4f87_A 52 IIPSINISK---SD-----VEAIRKAMK 71 (72)
T ss_dssp TSCEEECCG---GG-----HHHHHHHHC
T ss_pred hCccccccH---hH-----HHHHHHHhc
Confidence 499999986 23 566776654
No 10
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=29.72 E-value=14 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=16.4
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhcC
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACKE 74 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~e 74 (74)
-++||+..+ +.++-+|++.|+.
T Consensus 47 d~vvD~~~~------e~v~P~vve~Ckk 68 (89)
T 1dj8_A 47 DAVLDVQGI------ATVTPAIVQACTQ 68 (89)
T ss_dssp GCCCCHHHH------HHHHHHHHHHHHT
T ss_pred CceeehhHH------HHhhHHHHHHHHh
Confidence 468898653 4678899999974
No 11
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=23.53 E-value=66 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=21.0
Q ss_pred CCeeecCCCCCcchHHHHHHHHHHhhc
Q 046251 47 IPIIDMQSLLSEESMDSELAKLDFACK 73 (74)
Q Consensus 47 iPvIDLs~l~~~~~~~~~v~~i~~Ac~ 73 (74)
|=||||=.+.+..++..+.+.|.+|++
T Consensus 349 iIvIDFIdM~~~~~r~~v~~~l~~al~ 375 (517)
T 2bx2_L 349 LIVIDFIDMTPVRHQRAVENRLREAVR 375 (517)
T ss_dssp EEEEECCCCSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 669999877655567788889998875
No 12
>2bpt_B Nucleoporin NUP1; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae}
Probab=23.20 E-value=23 Score=16.22 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=7.2
Q ss_pred CCCeeecCCCCCc
Q 046251 46 QIPIIDMQSLLSE 58 (74)
Q Consensus 46 ~iPvIDLs~l~~~ 58 (74)
.+|-|.+++|.++
T Consensus 8 tvpninfsglngg 20 (39)
T 2bpt_B 8 TVPNINFSGLNGG 20 (39)
T ss_dssp SSCCCCCC-----
T ss_pred ccCcccccccccc
Confidence 5899999998653
No 13
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=22.78 E-value=1e+02 Score=16.85 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=14.1
Q ss_pred CCeeecCCCCCcc-hHHHHHHHHHHhh
Q 046251 47 IPIIDMQSLLSEE-SMDSELAKLDFAC 72 (74)
Q Consensus 47 iPvIDLs~l~~~~-~~~~~v~~i~~Ac 72 (74)
.=||||+.+..-| .--.++..+.+.|
T Consensus 51 ~vvlDls~v~~iDssgl~~L~~~~~~~ 77 (130)
T 4dgh_A 51 ILILRLKWVPFMDITGIQTLEEMIQSF 77 (130)
T ss_dssp EEEEECTTCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcccHHHHHHHHHHHHHH
Confidence 3488888875444 2224455554444
No 14
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=21.09 E-value=26 Score=23.39 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=15.0
Q ss_pred eeecCCCCCcc--hHHHHHHHHHHhhc
Q 046251 49 IIDMQSLLSEE--SMDSELAKLDFACK 73 (74)
Q Consensus 49 vIDLs~l~~~~--~~~~~v~~i~~Ac~ 73 (74)
||++..+.+++ .-.+.+.++++||.
T Consensus 146 VINig~lk~g~~~~v~~eI~~V~~a~~ 172 (288)
T 3oa3_A 146 VMNYPWLSEKRYTDVFQDIRAVRLAAK 172 (288)
T ss_dssp ECCHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred EeehhhhcCCcHHHHHHHHHHHHHHhc
Confidence 56666655554 22356777777875
Done!