Query 046252
Match_columns 124
No_of_seqs 150 out of 1176
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 1.5E-26 5.1E-31 147.4 4.0 61 54-114 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 92.9 0.035 1.2E-06 35.9 1.3 50 50-100 3-59 (77)
3 1u3e_M HNH homing endonuclease 90.5 0.038 1.3E-06 39.8 -0.6 39 55-97 109-147 (174)
4 1z1b_A Integrase; protein-DNA 77.2 2.5 8.5E-05 31.9 4.0 42 56-102 14-55 (356)
5 3jtz_A Integrase; four strande 63.9 3.1 0.00011 26.8 1.6 38 64-102 36-75 (88)
6 1uta_A FTSN, MSGA, cell divisi 52.2 5.4 0.00018 24.6 1.2 22 79-100 47-68 (81)
7 2bn8_A CEDA, cell division act 50.7 11 0.00037 24.2 2.4 39 51-93 36-74 (87)
8 1x60_A Sporulation-specific N- 48.3 4.1 0.00014 24.9 0.2 22 79-100 47-68 (79)
9 3ju0_A Phage integrase; four s 43.8 8.1 0.00028 25.8 1.1 37 65-102 37-75 (108)
10 2ftc_I Mitochondrial ribosomal 32.7 41 0.0014 22.7 3.3 37 65-104 79-115 (118)
11 1b69_A Protein (integrase); in 30.1 56 0.0019 20.2 3.3 25 51-75 8-33 (69)
12 3awu_B MELC; tyrosinase, binar 24.0 24 0.00082 24.7 0.9 21 83-106 99-119 (134)
13 3r8s_M 50S ribosomal protein L 20.6 83 0.0029 21.8 3.1 35 66-104 92-126 (136)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=1.5e-26 Score=147.39 Aligned_cols=61 Identities=59% Similarity=1.113 Sum_probs=55.9
Q ss_pred ceeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcCCCCCCCCCCC
Q 046252 54 KYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQGQNAELNFPQT 114 (124)
Q Consensus 54 ~yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G~~a~~NFp~~ 114 (124)
+|+||+++++|||+|+|+++.+++.++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999987789999999999865433999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=92.93 E-value=0.035 Score=35.88 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCCCceeee-eeCCCCcEEEEecCCCCCCcee----ecCCC--CCHHHHHHhhchhhh
Q 046252 50 AVRSKYRGV-RPRPWGKWTGEIKNPNKNTAQV----WLGTF--DMPEDAGSAYDPAPF 100 (124)
Q Consensus 50 ~~~S~yrGV-~~~~~gkw~A~I~~~~k~~~~i----~LG~f--~t~eeAA~AyD~aa~ 100 (124)
...|+|+|| |....+.|.|+-..+++...+. ++| | +.+.+||-.|-+...
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~le 59 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRRSRTFHPKHFN-MDKEKARLAAVEFMKTVE 59 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEeeeeechhhcC-cCHHHHHHHHHHHHHHHH
Confidence 468999999 7888899999999887643211 234 4 345555555544433
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=90.51 E-value=0.038 Score=39.83 Aligned_cols=39 Identities=5% Similarity=-0.175 Sum_probs=30.3
Q ss_pred eeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhch
Q 046252 55 YRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDP 97 (124)
Q Consensus 55 yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~ 97 (124)
++||.....++|.+.|... + .++||.|++.+|||++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~~-~---~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS-P---DGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC-T---TSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEEc-C---CceEEeeCCHHHHHHHHCc
Confidence 4677324446789999888 5 6689999999999999753
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=77.17 E-value=2.5 Score=31.88 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=31.4
Q ss_pred eeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhh
Q 046252 56 RGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQI 102 (124)
Q Consensus 56 rGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~ 102 (124)
.||+.++.|.|+.++...|+ ++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~~~~gk---~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPRTGK---EFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTTTCC---EEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeecCCe---EEECCC--CHHHHHHHHHHHHHHH
Confidence 36776777899999887777 888996 8888877766554443
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=63.90 E-value=3.1 Score=26.81 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=29.3
Q ss_pred CcEEEEecCCCCCCceeecCCCC--CHHHHHHhhchhhhhh
Q 046252 64 GKWTGEIKNPNKNTAQVWLGTFD--MPEDAGSAYDPAPFQI 102 (124)
Q Consensus 64 gkw~A~I~~~~k~~~~i~LG~f~--t~eeAA~AyD~aa~~~ 102 (124)
..|.-+.+.+++.. ++.||.|. |.+||....+++...+
T Consensus 36 K~w~~ryr~~Gk~~-~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKES-RIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEE-EEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEE-EEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 35999988888876 89999997 5888877776665544
No 6
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=52.17 E-value=5.4 Score=24.63 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.3
Q ss_pred eeecCCCCCHHHHHHhhchhhh
Q 046252 79 QVWLGTFDMPEDAGSAYDPAPF 100 (124)
Q Consensus 79 ~i~LG~f~t~eeAA~AyD~aa~ 100 (124)
++.+|.|.+.++|..+-++...
T Consensus 47 RV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 47 RVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEESSCBTTTHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 8999999999999888766544
No 7
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=50.69 E-value=11 Score=24.17 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=29.0
Q ss_pred CCCceeeeeeCCCCcEEEEecCCCCCCceeecCCCCCHHHHHH
Q 046252 51 VRSKYRGVRPRPWGKWTGEIKNPNKNTAQVWLGTFDMPEDAGS 93 (124)
Q Consensus 51 ~~S~yrGV~~~~~gkw~A~I~~~~k~~~~i~LG~f~t~eeAA~ 93 (124)
.--+|+-||.-+ |||+|.+..... -..--.|..+|.|-+
T Consensus 36 kmd~frdvw~lr-gkyvafvl~ge~---frrspafsvpesaqr 74 (87)
T 2bn8_A 36 KMDSFRDVWMLR-GKYVAFVLMGES---FLRSPAFTVPESAQR 74 (87)
T ss_dssp CTTTCTTEEEET-TEEEEBCCSSSC---CCBCCCBSSHHHHHH
T ss_pred hcccchhheeec-cceEEEEEechh---hccCCccCCcHHHHH
Confidence 346799998765 899999887665 334567888887765
No 8
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=48.32 E-value=4.1 Score=24.87 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.4
Q ss_pred eeecCCCCCHHHHHHhhchhhh
Q 046252 79 QVWLGTFDMPEDAGSAYDPAPF 100 (124)
Q Consensus 79 ~i~LG~f~t~eeAA~AyD~aa~ 100 (124)
++++|.|.+.++|..+-++...
T Consensus 47 RV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 47 KVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 8999999999999988766544
No 9
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=43.84 E-value=8.1 Score=25.76 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.9
Q ss_pred cEEEEecCCCCCCceeecCCCC--CHHHHHHhhchhhhhh
Q 046252 65 KWTGEIKNPNKNTAQVWLGTFD--MPEDAGSAYDPAPFQI 102 (124)
Q Consensus 65 kw~A~I~~~~k~~~~i~LG~f~--t~eeAA~AyD~aa~~~ 102 (124)
.|.-+.+.+++.. ++.||.|. |..+|....+.+...+
T Consensus 37 ~w~~rYr~~GK~~-~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 37 YWRLSYRFEKKQR-LLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEEEEEEETTEEE-EEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCceE-EEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 5999888888866 89999997 4777776666554444
No 10
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=32.71 E-value=41 Score=22.72 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=28.3
Q ss_pred cEEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcC
Q 046252 65 KWTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQG 104 (124)
Q Consensus 65 kw~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G 104 (124)
-|.|+|....- -+-++...+++.|..|...|+.+|-+
T Consensus 79 ~wva~Vk~G~i---lfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKAGRL---VVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECCCCE---EEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 49999985544 55666668899999999999887743
No 11
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=30.11 E-value=56 Score=20.23 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=19.8
Q ss_pred CCCceeeeeeCCCCcEEEEecCC-CC
Q 046252 51 VRSKYRGVRPRPWGKWTGEIKNP-NK 75 (124)
Q Consensus 51 ~~S~yrGV~~~~~gkw~A~I~~~-~k 75 (124)
+.--+.|+..+..|+|+.++.+. |+
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~~Gk 33 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDSFGE 33 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECTTSS
T ss_pred CCccCCCeEEccCCcEEEEEEcCCCC
Confidence 34557889888889999999987 44
No 12
>3awu_B MELC; tyrosinase, binary complex, type-3 copper, copper transfer, oxidoreductase-metal transport complex; 1.16A {Streptomyces castaneoglobisporus} PDB: 3awt_B 3aws_B 3awv_B 3aww_B 3ax0_B 3awy_B 3awz_B 3awx_B 1wxc_B 1wx2_B 1wx4_B 1wx5_B 1wx3_B 2ahk_B 2ahl_B 2zmx_B 2zmy_B 2zmz_B 2zwd_B 2zwe_B* ...
Probab=24.02 E-value=24 Score=24.72 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHhhchhhhhhcCCC
Q 046252 83 GTFDMPEDAGSAYDPAPFQIQGQN 106 (124)
Q Consensus 83 G~f~t~eeAA~AyD~aa~~~~G~~ 106 (124)
=.|+|+-+|||| |..+|.|..
T Consensus 99 es~pTPl~AARa---AVdEL~gA~ 119 (134)
T 3awu_B 99 DPVPTPRAAARA---AVDELQGAP 119 (134)
T ss_dssp EEESSHHHHHHH---HHHHHTTCC
T ss_pred CCCCCHHHHHHH---HHHHhcccc
Confidence 368999999998 777776654
No 13
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=20.62 E-value=83 Score=21.76 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.3
Q ss_pred EEEEecCCCCCCceeecCCCCCHHHHHHhhchhhhhhcC
Q 046252 66 WTGEIKNPNKNTAQVWLGTFDMPEDAGSAYDPAPFQIQG 104 (124)
Q Consensus 66 w~A~I~~~~k~~~~i~LG~f~t~eeAA~AyD~aa~~~~G 104 (124)
|.|.|....- -+-++. .+++.|..|...|+.+|-+
T Consensus 92 wva~Vk~G~i---lfEi~g-~~~~~A~eAlr~a~~KLP~ 126 (136)
T 3r8s_M 92 WVALIQPGKV---LYEMDG-VPEELAREAFKLAAAKLPI 126 (136)
T ss_dssp EEEEECTTCE---EEEEES-SCHHHHHHHHHHHHTTCSS
T ss_pred EEEEECCCCE---EEEEeC-CCHHHHHHHHHHHHhcCCC
Confidence 9999976555 556666 4899999999999887744
Done!