BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046254
         (321 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P4S|A Chain A, Structure Of Purine Nucleoside Phosphorylase From
           Anopheles Gambiae In Complex With Dadme-immh
 pdb|2P4S|B Chain B, Structure Of Purine Nucleoside Phosphorylase From
           Anopheles Gambiae In Complex With Dadme-immh
 pdb|2P4S|C Chain C, Structure Of Purine Nucleoside Phosphorylase From
           Anopheles Gambiae In Complex With Dadme-immh
          Length = 373

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 213 TVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCF 250
           TV E ++ ++L  + I   + H+I    T R CG+TCF
Sbjct: 287 TVAEVKMLSMLGVDAIGMSTVHEI---ITARHCGMTCF 321


>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
 pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
          Length = 239

 Score = 28.5 bits (62), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 7  TYMLKLGIGDPVKSLWFLLDTVAGLTW---TQCQPCKSCYEQNDPIYNSRSFKSYKKLPC 63
          +Y  ++GIG P +    + DT + + W   ++C   K+C   +  +Y S    +YK+   
Sbjct: 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS--MYESSDSSTYKENGT 71

Query: 64 YDA 66
          + A
Sbjct: 72 FGA 74


>pdb|3HCI|A Chain A, Structure Of Msrb From Xanthomonas Campestris
           (Complex-Like Form)
 pdb|3HCI|B Chain B, Structure Of Msrb From Xanthomonas Campestris
           (Complex-Like Form)
          Length = 154

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 225 AEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNS 258
           A F   F  + ++ ++TCR CG+  F   A+F+S
Sbjct: 36  APFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDS 69


>pdb|3HCJ|A Chain A, Structure Of Msrb From Xanthomonas Campestris (Oxidized
           Form)
 pdb|3HCJ|B Chain B, Structure Of Msrb From Xanthomonas Campestris (Oxidized
           Form)
          Length = 154

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 225 AEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNS 258
           A F   F  + ++ ++TCR CG+  F   A+F+S
Sbjct: 36  APFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDS 69


>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
          Falciparum
 pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
          Falciparum
 pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
          (Pmi) From Plasmodium Falciparum
 pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
          (Pmi) From Plasmodium Falciparum
 pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
          (Pmi) From Plasmodium Falciparum
 pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
          (Pmi) From Plasmodium Falciparum
          Length = 336

 Score = 28.1 bits (61), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 5  NHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKK 60
          N  Y  +  IGD  +   F+ DT +   W     C +   +   +Y+S   K+Y+K
Sbjct: 20 NVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTIGCKTKNLYDSNKSKTYEK 75


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,915,700
Number of Sequences: 62578
Number of extensions: 405361
Number of successful extensions: 770
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 7
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)