Query 046254
Match_columns 321
No_of_seqs 126 out of 1174
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 5.8E-59 1.3E-63 440.2 33.7 307 3-321 80-419 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 6.4E-52 1.4E-56 389.9 30.9 305 3-319 42-382 (398)
3 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.1E-51 4.5E-56 377.3 27.9 273 6-321 2-316 (326)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.2E-50 2.6E-55 372.4 28.0 281 3-321 2-319 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-50 4E-55 369.8 27.5 276 4-321 7-311 (317)
6 cd05472 cnd41_like Chloroplast 100.0 7.2E-50 1.6E-54 363.1 29.5 262 7-321 1-290 (299)
7 cd05477 gastricsin Gastricsins 100.0 1.4E-49 3.1E-54 364.2 28.8 279 5-321 1-311 (318)
8 cd05486 Cathespin_E Cathepsin 100.0 8.4E-50 1.8E-54 365.3 26.3 277 8-321 1-310 (316)
9 PTZ00165 aspartyl protease; Pr 100.0 4.9E-49 1.1E-53 374.8 29.6 280 2-321 115-439 (482)
10 cd05489 xylanase_inhibitor_I_l 100.0 1.4E-48 3E-53 361.9 29.3 288 14-321 2-354 (362)
11 cd05488 Proteinase_A_fungi Fun 100.0 9.4E-49 2E-53 358.9 27.2 279 4-321 7-314 (320)
12 PTZ00147 plasmepsin-1; Provisi 100.0 9.4E-49 2E-53 370.2 27.6 280 4-321 136-442 (453)
13 cd05485 Cathepsin_D_like Cathe 100.0 2.3E-48 5E-53 357.5 27.9 281 3-321 7-323 (329)
14 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.1E-48 1.1E-52 364.5 28.6 280 4-321 135-441 (450)
15 cd05487 renin_like Renin stimu 100.0 6.7E-48 1.4E-52 354.2 27.3 281 3-321 4-319 (326)
16 cd06098 phytepsin Phytepsin, a 100.0 1.1E-47 2.5E-52 351.2 26.9 269 3-321 6-311 (317)
17 cd05475 nucellin_like Nucellin 100.0 1.7E-45 3.8E-50 330.0 27.6 238 6-321 1-264 (273)
18 cd05473 beta_secretase_like Be 100.0 1.1E-45 2.4E-50 344.4 26.5 286 6-321 2-338 (364)
19 cd06097 Aspergillopepsin_like 100.0 5.4E-45 1.2E-49 327.8 23.6 243 8-321 1-272 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 2.2E-43 4.7E-48 315.2 25.5 222 7-321 1-256 (265)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.4E-42 5.2E-47 315.8 19.5 277 7-321 1-310 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 2.6E-41 5.5E-46 306.4 25.1 241 7-321 2-288 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.4E-40 7.3E-45 296.7 25.8 242 8-320 1-276 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.3E-34 7.3E-39 237.2 13.5 158 8-179 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1E-25 2.3E-30 173.9 11.8 108 10-141 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.9 1.6E-22 3.4E-27 167.1 10.9 137 184-321 13-155 (161)
27 cd05483 retropepsin_like_bacte 98.2 6.5E-06 1.4E-10 61.1 7.1 93 6-142 1-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.8 0.0092 2E-07 46.5 8.2 95 4-142 8-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.1 0.056 1.2E-06 39.1 8.6 89 10-142 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.2 0.17 3.6E-06 39.6 8.6 37 3-41 12-48 (124)
31 PF11925 DUF3443: Protein of u 92.2 1.3 2.8E-05 40.9 9.5 55 83-144 82-149 (370)
32 cd05484 retropepsin_like_LTR_2 91.1 0.28 6E-06 35.9 3.5 29 8-38 1-29 (91)
33 PF13975 gag-asp_proteas: gag- 88.4 0.96 2.1E-05 31.5 4.3 36 3-40 4-39 (72)
34 TIGR03698 clan_AA_DTGF clan AA 86.1 5.3 0.00011 30.2 7.6 21 300-320 84-104 (107)
35 cd05479 RP_DDI RP_DDI; retrope 85.9 1.4 2.9E-05 34.4 4.3 22 300-321 99-120 (124)
36 PF00077 RVP: Retroviral aspar 84.1 1.7 3.6E-05 32.2 4.0 28 9-38 7-34 (100)
37 PF13975 gag-asp_proteas: gag- 72.0 3.4 7.5E-05 28.7 2.3 21 203-223 21-41 (72)
38 PF08284 RVP_2: Retroviral asp 70.9 16 0.00034 28.9 6.1 20 301-320 105-124 (135)
39 COG3577 Predicted aspartyl pro 68.9 18 0.0004 30.7 6.3 78 4-117 102-179 (215)
40 PF13650 Asp_protease_2: Aspar 68.8 4.2 9.1E-05 28.9 2.3 23 201-223 9-31 (90)
41 PF12384 Peptidase_A2B: Ty3 tr 66.3 12 0.00026 30.6 4.4 24 201-224 45-68 (177)
42 PF12384 Peptidase_A2B: Ty3 tr 65.6 9.4 0.0002 31.2 3.8 29 9-37 34-62 (177)
43 TIGR02281 clan_AA_DTGA clan AA 63.5 5.8 0.00013 30.7 2.3 23 201-223 22-44 (121)
44 cd05482 HIV_retropepsin_like R 62.7 9.9 0.00021 27.6 3.2 25 11-37 2-26 (87)
45 cd05484 retropepsin_like_LTR_2 62.3 7.6 0.00016 28.1 2.6 22 202-223 12-33 (91)
46 COG5550 Predicted aspartyl pro 61.6 6.8 0.00015 30.3 2.2 20 204-223 29-49 (125)
47 cd06095 RP_RTVL_H_like Retrope 61.3 11 0.00024 27.0 3.3 26 11-38 2-27 (86)
48 PF09668 Asp_protease: Asparty 60.5 16 0.00036 28.4 4.2 40 2-43 19-58 (124)
49 cd05483 retropepsin_like_bacte 57.8 8.9 0.00019 27.5 2.3 23 201-223 13-35 (96)
50 cd05481 retropepsin_like_LTR_1 52.4 12 0.00026 27.5 2.2 24 201-224 10-33 (93)
51 cd06095 RP_RTVL_H_like Retrope 44.6 19 0.00042 25.7 2.3 22 202-223 10-31 (86)
52 TIGR03698 clan_AA_DTGF clan AA 41.4 36 0.00078 25.6 3.4 65 9-105 1-70 (107)
53 PF02160 Peptidase_A3: Caulifl 40.8 35 0.00076 29.0 3.5 19 202-220 21-39 (201)
54 cd05475 nucellin_like Nucellin 39.5 41 0.00088 29.8 4.0 32 6-37 157-194 (273)
55 cd06098 phytepsin Phytepsin, a 32.4 53 0.0012 29.8 3.7 32 6-37 188-227 (317)
56 cd05471 pepsin_like Pepsin-lik 30.4 50 0.0011 28.8 3.1 35 5-39 179-221 (283)
57 cd06096 Plasmepsin_5 Plasmepsi 29.6 50 0.0011 30.1 3.0 32 6-37 208-248 (326)
58 cd05472 cnd41_like Chloroplast 27.3 51 0.0011 29.5 2.6 32 6-37 146-188 (299)
59 PF15409 PH_8: Pleckstrin homo 25.4 2E+02 0.0044 20.9 4.9 30 200-229 55-87 (89)
60 cd05486 Cathespin_E Cathepsin 25.2 62 0.0013 29.3 2.7 33 5-37 176-215 (316)
61 cd06094 RP_Saci_like RP_Saci_l 22.8 68 0.0015 23.4 2.0 23 199-221 7-29 (89)
62 PLN03146 aspartyl protease fam 22.4 72 0.0016 30.5 2.7 32 6-37 279-324 (431)
63 cd06097 Aspergillopepsin_like 21.9 64 0.0014 28.5 2.1 32 6-37 177-215 (278)
64 PTZ00147 plasmepsin-1; Provisi 21.7 76 0.0017 30.7 2.7 32 6-37 315-349 (453)
65 cd00303 retropepsin_like Retro 20.1 73 0.0016 21.1 1.7 22 202-223 10-31 (92)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.8e-59 Score=440.23 Aligned_cols=307 Identities=28% Similarity=0.517 Sum_probs=249.9
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCC-CC--CCCCC-C
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKS-PF--HCFEG-D 78 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~~--~c~~~-~ 78 (321)
.++++|+++|.||||||++.|++||||+++||+|++|..|..+.++.|||++|+||+.++|.++.|+. +. .|..+ .
T Consensus 80 ~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~ 159 (431)
T PLN03146 80 SNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENT 159 (431)
T ss_pred cCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCC
Confidence 45789999999999999999999999999999999999999888999999999999999999999987 32 47554 6
Q ss_pred ceEEEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCchHHHhhhccCC
Q 046254 79 CFYGITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFMVQLGRLVPD 158 (321)
Q Consensus 79 ~~~~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~ 158 (321)
|.|.+.|++|+.+.|.+++|+|+|+ +..++...++++.|||++.+.+ .|. ...+||||||++++|++.|+...+.+
T Consensus 160 c~y~i~Ygdgs~~~G~l~~Dtltlg-~~~~~~~~v~~~~FGc~~~~~g--~f~-~~~~GilGLG~~~~Sl~sql~~~~~~ 235 (431)
T PLN03146 160 CTYSYSYGDGSFTKGNLAVETLTIG-STSGRPVSFPGIVFGCGHNNGG--TFD-EKGSGIVGLGGGPLSLISQLGSSIGG 235 (431)
T ss_pred CeeEEEeCCCCceeeEEEEEEEEec-cCCCCcceeCCEEEeCCCCCCC--Ccc-CCCceeEecCCCCccHHHHhhHhhCC
Confidence 9999999999988999999999999 6554446788999999998876 552 25799999999999999999876667
Q ss_pred ceEEeecCCCC--CCcceEEeCCCCCC-c---ceEecC----CCceeeee-------------------cCCcceEEecc
Q 046254 159 RFSCCLVQPDK--SFHSRLEFGDQIIA-G---KSLNLP----PNSFTIKL-------------------NGQRGCINDCG 209 (321)
Q Consensus 159 ~Fs~~l~~~~~--~~~g~l~~G~~d~~-~---t~l~i~----~~~~~i~~-------------------~~~~~~iiDSG 209 (321)
+|||||.+... ...|.|+||+.... + .+.++- ...|.+.. .+.+++|||||
T Consensus 236 ~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSG 315 (431)
T PLN03146 236 KFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSG 315 (431)
T ss_pred cEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCC
Confidence 99999975321 35799999996421 1 112221 23343321 11247999999
Q ss_pred CceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCCCeEEE
Q 046254 210 SVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQDSFFF 289 (321)
Q Consensus 210 Tt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~ 289 (321)
|++++||+++|++|+++|.+.+...+...... .+..||.... ...+|+|+|+|+|.++.+++++|++....+.+|+
T Consensus 316 Tt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~---~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl 391 (431)
T PLN03146 316 TTLTLLPSDFYSELESAVEEAIGGERVSDPQG---LLSLCYSSTS-DIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCF 391 (431)
T ss_pred ccceecCHHHHHHHHHHHHHHhccccCCCCCC---CCCccccCCC-CCCCCeEEEEECCCeeecCcceeEEEcCCCcEEE
Confidence 99999999999999999998875333222222 4678998542 2468999999998899999999999887778999
Q ss_pred EEecCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 290 FFGPAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 290 ~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
+++.. .+.+|||+.|||++|||||++|+
T Consensus 392 ~~~~~----~~~~IlG~~~q~~~~vvyDl~~~ 419 (431)
T PLN03146 392 AMIPT----SSIAIFGNLAQMNFLVGYDLESK 419 (431)
T ss_pred EEecC----CCceEECeeeEeeEEEEEECCCC
Confidence 98765 34699999999999999999974
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-52 Score=389.87 Aligned_cols=305 Identities=29% Similarity=0.460 Sum_probs=245.6
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCC-CCCCCCCCCccCCCCCccceeeCCCCCCCC-CCCC-CCCCc
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCK-SCYEQNDPIYNSRSFKSYKKLPCYDASCKS-PFHC-FEGDC 79 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~-~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~~~c-~~~~~ 79 (321)
..+++|+++|.||||||++.|++||||+++||+|..|. .|..+.++.|+|++||||+.+.|.++.|+. ...| .++.|
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C 121 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSC 121 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcC
Confidence 35678999999999999999999999999999999999 798765666999999999999999999999 4434 45589
Q ss_pred eEEEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccc-cCcceEEeeCCCCCchHHHhhhcc--
Q 046254 80 FYGITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQK-KIIAGIMGLNWDSTSFMVQLGRLV-- 156 (321)
Q Consensus 80 ~~~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~ql~~~~-- 156 (321)
.|.+.|++|+.++|.+++|+|+++ +.+ .+..+++.|||+..+.+ .+.. ...+||||||+++++++.|+....
T Consensus 122 ~y~i~Ygd~~~~~G~l~~Dtv~~~-~~~--~~~~~~~~FGc~~~~~g--~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~ 196 (398)
T KOG1339|consen 122 PYSIQYGDGSSTSGYLATDTVTFG-GTT--SLPVPNQTFGCGTNNPG--SFGLFAAFDGILGLGRGSLSVPSQLPSFYNA 196 (398)
T ss_pred ceEEEeCCCCceeEEEEEEEEEEc-ccc--ccccccEEEEeeecCcc--ccccccccceEeecCCCCccceeecccccCC
Confidence 999999997779999999999999 643 25677899999999976 3212 468999999999999999988753
Q ss_pred CCceEEeecCCCCC--CcceEEeCCCCCCc-----ceEecCC-C--ceeeee-----cC------------CcceEEecc
Q 046254 157 PDRFSCCLVQPDKS--FHSRLEFGDQIIAG-----KSLNLPP-N--SFTIKL-----NG------------QRGCINDCG 209 (321)
Q Consensus 157 ~~~Fs~~l~~~~~~--~~g~l~~G~~d~~~-----t~l~i~~-~--~~~i~~-----~~------------~~~~iiDSG 209 (321)
.++||+||.+.... .+|.|+||+.|... +.+++.. . .|.+.. .+ ..++|+|||
T Consensus 197 ~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiDSG 276 (398)
T KOG1339|consen 197 INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIIDSG 276 (398)
T ss_pred ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEECC
Confidence 34699999987422 58999999999863 2444432 2 565431 11 367999999
Q ss_pred CceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEe-CcEEEeCCCceEEEcCCCeE-
Q 046254 210 SVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQ-GADLVVEPENVFIFNHQDSF- 287 (321)
Q Consensus 210 Tt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~-g~~~~i~~~~y~~~~~~~~~- 287 (321)
|++++||.++|++|.+++.+..+ ...... .....|+........+|.|+|+|+ |..|.+++++|++..+.+..
T Consensus 277 Ts~t~lp~~~y~~i~~~~~~~~~-~~~~~~----~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~ 351 (398)
T KOG1339|consen 277 TSLTYLPTSAYNALREAIGAEVS-VVGTDG----EYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV 351 (398)
T ss_pred cceeeccHHHHHHHHHHHHhhee-ccccCC----ceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCc
Confidence 99999999999999999988630 000111 256799987643234899999999 56999999999998876444
Q ss_pred EEEEecCCCCCC-CceeeechheeeeEEEEeCC
Q 046254 288 FFFFGPAFTPRK-GKTILGARHQHNTQFVYDLD 319 (321)
Q Consensus 288 C~~~~~~~~~~~-~~~ilG~~fl~~~~vvfD~~ 319 (321)
|++++... .. ..||||+.|||+++++||+.
T Consensus 352 Cl~~~~~~--~~~~~~ilG~~~~~~~~~~~D~~ 382 (398)
T KOG1339|consen 352 CLAFFNGM--DSGPLWILGDVFQQNYLVVFDLG 382 (398)
T ss_pred eeeEEecC--CCCceEEEchHHhCCEEEEEeCC
Confidence 99988762 22 58999999999999999996
No 3
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.1e-51 Score=377.34 Aligned_cols=273 Identities=22% Similarity=0.305 Sum_probs=218.6
Q ss_pred ceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEE
Q 046254 6 HTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITY 85 (321)
Q Consensus 6 ~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y 85 (321)
+.|+++|.||||+|++.|++||||+++||+|..|..|..+.++.|+|++|+|++.++|.+..|.....|.++.|.|.+.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y 81 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISY 81 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEE
Confidence 68999999999999999999999999999999999999888899999999999999999999965556777889999999
Q ss_pred CCCCceEEEEEEEEEEecCCCCCC--CccccceeEeeccccCCcccccccCcceEEeeCCCCCch----HHHhhh---cc
Q 046254 86 GDVYETKEVDSLDTSTLLPPDEPS--PVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSF----MVQLGR---LV 156 (321)
Q Consensus 86 ~~g~~~~G~l~~D~v~~~~~~~~~--~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~----~~ql~~---~~ 156 (321)
++|+.+.|.+++|+|+|+ +.... .....++.|||+..+.+ .+.....+||||||+.+.+- ..++.. ..
T Consensus 82 ~~gs~~~G~~~~D~v~lg-~~~~~~~~~~~~~~~fg~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~ 158 (326)
T cd06096 82 SEGSSISGFYFSDFVSFE-SYLNSNSEKESFKKIFGCHTHETN--LFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKL 158 (326)
T ss_pred CCCCceeeEEEEEEEEec-cCCCCccccccccEEeccCccccC--cccccccceEEEccCCcccccCchhHHHHHhcccc
Confidence 999889999999999999 53211 01123578999998876 55556789999999986421 111211 12
Q ss_pred --CCceEEeecCCCCCCcceEEeCCCCCCc---------------ceEecC-CCceeeee--------------cCCcce
Q 046254 157 --PDRFSCCLVQPDKSFHSRLEFGDQIIAG---------------KSLNLP-PNSFTIKL--------------NGQRGC 204 (321)
Q Consensus 157 --~~~Fs~~l~~~~~~~~g~l~~G~~d~~~---------------t~l~i~-~~~~~i~~--------------~~~~~~ 204 (321)
.++||+||.+ ..|.|+||++|+.. .++++. ...|.++. .....+
T Consensus 159 ~~~~~FS~~l~~----~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~a 234 (326)
T cd06096 159 KKDKIFSICLSE----DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGM 234 (326)
T ss_pred cCCceEEEEEcC----CCeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCE
Confidence 4899999986 36999999998531 244443 24565441 234569
Q ss_pred EEeccCceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEe-CcEEEeCCCceEEEcC
Q 046254 205 INDCGSVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQ-GADLVVEPENVFIFNH 283 (321)
Q Consensus 205 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~-g~~~~i~~~~y~~~~~ 283 (321)
||||||++++||+++|++|.+++ |+|+|+|+ |.+++++|++|++...
T Consensus 235 ivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i~p~~y~~~~~ 282 (326)
T cd06096 235 LVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDWKPSSYLYKKE 282 (326)
T ss_pred EEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEECHHHhccccC
Confidence 99999999999999999887643 88999999 5599999999999876
Q ss_pred CCeEEEEEecCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 284 QDSFFFFFGPAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 284 ~~~~C~~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
+..+|+++... .+.+|||++|||++|+|||++|.
T Consensus 283 ~~~c~~~~~~~----~~~~ILG~~flr~~y~vFD~~~~ 316 (326)
T cd06096 283 SFWCKGGEKSV----SNKPILGASFFKNKQIIFDLDNN 316 (326)
T ss_pred CceEEEEEecC----CCceEEChHHhcCcEEEEECcCC
Confidence 55556665543 46899999999999999999974
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.2e-50 Score=372.39 Aligned_cols=281 Identities=20% Similarity=0.266 Sum_probs=219.0
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCC----CCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCC
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCK----SCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGD 78 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~----~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~ 78 (321)
..+.+|+++|.||||||++.|++||||+++||+|..|. .|. .++.|+|++|+||+.. .
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~--~~~~y~~~~SsT~~~~----------------~ 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACW--LHHKYNSSKSSTYVKN----------------G 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCcccc--CcCcCCcccCcceeeC----------------C
Confidence 45889999999999999999999999999999999997 354 4679999999999862 4
Q ss_pred ceEEEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCc------hHHHh
Q 046254 79 CFYGITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTS------FMVQL 152 (321)
Q Consensus 79 ~~~~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql 152 (321)
|.|.+.|++|+ +.|.+++|+|+++ + +.++++.|||++.+.+. .+.....+||||||++..+ ++.+|
T Consensus 64 ~~~~i~Yg~G~-~~G~~~~D~v~~g-~-----~~~~~~~Fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 64 TEFAIQYGSGS-LSGYLSQDTVSIG-G-----LQVEGQLFGEAVKQPGI-TFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred cEEEEEECCcE-EEEEEeeeEEEEC-C-----EEEcCEEEEEEeeccCC-cccceeeeEEEecCCccccccCCCCHHHHH
Confidence 79999999998 8999999999999 7 78999999999877642 2433568999999987654 44566
Q ss_pred hhc---cCCceEEeecCCCC-CCcceEEeCCCCCCc-----ceEecCC-Cceeeee------------cCCcceEEeccC
Q 046254 153 GRL---VPDRFSCCLVQPDK-SFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL------------NGQRGCINDCGS 210 (321)
Q Consensus 153 ~~~---~~~~Fs~~l~~~~~-~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~------------~~~~~~iiDSGT 210 (321)
..+ .+++||+||.+... ..+|+|+||++|+.+ .++++.. ..|.++. .....+||||||
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGT 215 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGT 215 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEEECCCC
Confidence 553 46899999986431 247999999999753 3455543 5565441 133579999999
Q ss_pred ceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCC--CeEE
Q 046254 211 VLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQ--DSFF 288 (321)
Q Consensus 211 t~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~--~~~C 288 (321)
+++++|++++++|.+++.+. +.... .....|... ..+|+|+|+|+|..++|+|++|+++... ...|
T Consensus 216 t~~~~p~~~~~~l~~~~~~~----~~~~~----~~~~~C~~~----~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C 283 (325)
T cd05490 216 SLITGPVEEVRALQKAIGAV----PLIQG----EYMIDCEKI----PTLPVISFSLGGKVYPLTGEDYILKVSQRGTTIC 283 (325)
T ss_pred ccccCCHHHHHHHHHHhCCc----cccCC----CEEeccccc----ccCCCEEEEECCEEEEEChHHeEEeccCCCCCEE
Confidence 99999999999999887532 11111 134566643 4689999999888999999999997653 3589
Q ss_pred EE-EecCCC--CCCCceeeechheeeeEEEEeCCCC
Q 046254 289 FF-FGPAFT--PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 289 ~~-~~~~~~--~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
+. +..... ...+.||||+.|||++|+|||++|.
T Consensus 284 ~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~ 319 (325)
T cd05490 284 LSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDND 319 (325)
T ss_pred eeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCc
Confidence 85 543211 2246899999999999999999974
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-50 Score=369.83 Aligned_cols=276 Identities=21% Similarity=0.248 Sum_probs=220.5
Q ss_pred cCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 4 LNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 4 ~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
.+..|+++|.||||||++.|++||||+++||+|..|..|.++.++.|||++|+|++.. .|.+.+
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~----------------~~~~~~ 70 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQST----------------GQPLSI 70 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeC----------------CcEEEE
Confidence 4789999999999999999999999999999999998755556789999999999875 368999
Q ss_pred EECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCccccc-ccCcceEEeeCCCCC------chHHHhhhc-
Q 046254 84 TYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQ-KKIIAGIMGLNWDST------SFMVQLGRL- 155 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~-~~~~~GIlGLg~~~~------s~~~ql~~~- 155 (321)
.|++|+ +.|.+++|+|+++ + +.++++.|||++.+.+ .+. ....+||||||++.. +++.+|+.+
T Consensus 71 ~yg~gs-~~G~~~~D~v~ig-~-----~~i~~~~fg~~~~~~~--~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g 141 (317)
T cd05478 71 QYGTGS-MTGILGYDTVQVG-G-----ISDTNQIFGLSETEPG--SFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQG 141 (317)
T ss_pred EECCce-EEEEEeeeEEEEC-C-----EEECCEEEEEEEecCc--cccccccccceeeeccchhcccCCCCHHHHHHhCC
Confidence 999998 8999999999999 7 7899999999987765 331 235799999998754 477777764
Q ss_pred --cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecCC-Cceeeee------------cCCcceEEeccCceEee
Q 046254 156 --VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL------------NGQRGCINDCGSVLTVI 215 (321)
Q Consensus 156 --~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~------------~~~~~~iiDSGTt~~~l 215 (321)
.+++||+||.+.. ..+|+|+|||+|++. +++++.. ..|.++. ..+..+||||||++++|
T Consensus 142 ~i~~~~FS~~L~~~~-~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~l 220 (317)
T cd05478 142 LVSQDLFSVYLSSNG-QQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVG 220 (317)
T ss_pred CCCCCEEEEEeCCCC-CCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhC
Confidence 3589999998753 357999999999753 4566543 4565541 23457999999999999
Q ss_pred chHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCCCeEEEE-EecC
Q 046254 216 ECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQDSFFFF-FGPA 294 (321)
Q Consensus 216 p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~-~~~~ 294 (321)
|+++|++|.+++.+... .. . ....+|... ..+|.|+|+|+|.+++|||++|+... +..|+. +...
T Consensus 221 p~~~~~~l~~~~~~~~~----~~--~--~~~~~C~~~----~~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~~~~~~ 286 (317)
T cd05478 221 PSSDIANIQSDIGASQN----QN--G--EMVVNCSSI----SSMPDVVFTINGVQYPLPPSAYILQD--QGSCTSGFQSM 286 (317)
T ss_pred CHHHHHHHHHHhCCccc----cC--C--cEEeCCcCc----ccCCcEEEEECCEEEEECHHHheecC--CCEEeEEEEeC
Confidence 99999999988754320 01 1 123466543 36899999998889999999999875 468986 4443
Q ss_pred CCCCCCceeeechheeeeEEEEeCCCC
Q 046254 295 FTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 295 ~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
...+.||||+.|||++|+|||++|.
T Consensus 287 --~~~~~~IlG~~fl~~~y~vfD~~~~ 311 (317)
T cd05478 287 --GLGELWILGDVFIRQYYSVFDRANN 311 (317)
T ss_pred --CCCCeEEechHHhcceEEEEeCCCC
Confidence 2246899999999999999999974
No 6
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.2e-50 Score=363.11 Aligned_cols=262 Identities=29% Similarity=0.453 Sum_probs=209.8
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEEC
Q 046254 7 TYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYG 86 (321)
Q Consensus 7 ~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~ 86 (321)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------~~~~i~Yg 41 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------CLYQVSYG 41 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------CeeeeEeC
Confidence 599999999999999999999999999987665 36789999
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCc-cccceeEeeccccCCcccccccCcceEEeeCCCCCchHHHhhhccCCceEEeec
Q 046254 87 DVYETKEVDSLDTSTLLPPDEPSPV-SVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFMVQLGRLVPDRFSCCLV 165 (321)
Q Consensus 87 ~g~~~~G~l~~D~v~~~~~~~~~~~-~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l~ 165 (321)
+|+.++|.+++|+|+|+ + . .++++.|||+..+.+ .+ ...+||||||++..+++.|+..+.+++||+||.
T Consensus 42 ~Gs~~~G~~~~D~v~ig-~-----~~~~~~~~Fg~~~~~~~--~~--~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~ 111 (299)
T cd05472 42 DGSYTTGDLATDTLTLG-S-----SDVVPGFAFGCGHDNEG--LF--GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLP 111 (299)
T ss_pred CCceEEEEEEEEEEEeC-C-----CCccCCEEEECCccCCC--cc--CCCCEEEECCCCcchHHHHhhHhhcCceEEEcc
Confidence 99978999999999999 6 5 788999999998876 45 368999999999999999987767789999998
Q ss_pred CCCCCCcceEEeCCCCCCc---ceEecCC-----Cceeeee----------------cCCcceEEeccCceEeechHHHH
Q 046254 166 QPDKSFHSRLEFGDQIIAG---KSLNLPP-----NSFTIKL----------------NGQRGCINDCGSVLTVIECEVYA 221 (321)
Q Consensus 166 ~~~~~~~g~l~~G~~d~~~---t~l~i~~-----~~~~i~~----------------~~~~~~iiDSGTt~~~lp~~~~~ 221 (321)
+.....+|+|+||++|+.. .+++|.. ..|.++. .....+||||||++++||+++|+
T Consensus 112 ~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 112 DRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 7432468999999999741 3333321 3455431 12357999999999999999999
Q ss_pred HHHHHHHHHhccCCcccccccCCCccceEecCCC-CCCCCeEEEEEe-CcEEEeCCCceEEEc-CCCeEEEEEecCCCCC
Q 046254 222 VLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPAR-FNSFPSMTYHFQ-GADLVVEPENVFIFN-HQDSFFFFFGPAFTPR 298 (321)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~~~f~-g~~~~i~~~~y~~~~-~~~~~C~~~~~~~~~~ 298 (321)
+|.+++.+.....+..... .....||..++. ...+|+|+|+|+ |.+++|+|++|++.. ..+..|+++.... ..
T Consensus 192 ~l~~~l~~~~~~~~~~~~~---~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~-~~ 267 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGF---SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTS-DD 267 (299)
T ss_pred HHHHHHHHHhccCCCCCCC---CCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCC-CC
Confidence 9999998876332222211 133469877554 457999999998 569999999999943 3367899887652 12
Q ss_pred CCceeeechheeeeEEEEeCCCC
Q 046254 299 KGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 299 ~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
.+.+|||+.|||++|+|||++|+
T Consensus 268 ~~~~ilG~~fl~~~~vvfD~~~~ 290 (299)
T cd05472 268 GGLSIIGNVQQQTFRVVYDVAGG 290 (299)
T ss_pred CCCEEEchHHccceEEEEECCCC
Confidence 46799999999999999999974
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-49 Score=364.16 Aligned_cols=279 Identities=21% Similarity=0.287 Sum_probs=218.6
Q ss_pred CceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEE
Q 046254 5 NHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGIT 84 (321)
Q Consensus 5 ~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~ 84 (321)
|..|+++|.||||||++.|++||||+++||+|..|..+.+..++.|||++|+||+.. .|.|++.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~----------------~~~~~~~ 64 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTN----------------GETFSLQ 64 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceEC----------------CcEEEEE
Confidence 568999999999999999999999999999999998533345779999999999873 4799999
Q ss_pred ECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCC------CchHHHhhhc---
Q 046254 85 YGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDS------TSFMVQLGRL--- 155 (321)
Q Consensus 85 Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~--- 155 (321)
|++|+ +.|.+++|+|+++ + +.++++.|||++...+. .+.....+||||||++. .+++.||..+
T Consensus 65 Yg~Gs-~~G~~~~D~i~~g-~-----~~i~~~~Fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i 136 (318)
T cd05477 65 YGSGS-LTGIFGYDTVTVQ-G-----IIITNQEFGLSETEPGT-NFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLL 136 (318)
T ss_pred ECCcE-EEEEEEeeEEEEC-C-----EEEcCEEEEEEEecccc-cccccceeeEeecCcccccccCCCCHHHHHHhcCCc
Confidence 99998 8999999999999 7 78999999999876542 23234579999999853 4678888764
Q ss_pred cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecCC-Cceeeee-------------cCCcceEEeccCceEeec
Q 046254 156 VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL-------------NGQRGCINDCGSVLTVIE 216 (321)
Q Consensus 156 ~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~-------------~~~~~~iiDSGTt~~~lp 216 (321)
.+++||+||.+.....+|.|+||++|+.+ +++++.. ..|.++. ..+..+||||||++++||
T Consensus 137 ~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP 216 (318)
T cd05477 137 QAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAP 216 (318)
T ss_pred CCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECC
Confidence 36899999987532357999999999653 4555543 5555531 123469999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCCCeEEE-EEecCC
Q 046254 217 CEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQDSFFF-FFGPAF 295 (321)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~-~~~~~~ 295 (321)
+++|++|++++.+... .. . ....+|... ..+|.|+|+|+|.++.||+++|++.. +..|+ ++....
T Consensus 217 ~~~~~~l~~~~~~~~~----~~--~--~~~~~C~~~----~~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~~~~ 282 (318)
T cd05477 217 QQVMSTLMQSIGAQQD----QY--G--QYVVNCNNI----QNLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIEPTY 282 (318)
T ss_pred HHHHHHHHHHhCCccc----cC--C--CEEEeCCcc----ccCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEEecc
Confidence 9999999988854321 11 1 123455543 46899999999889999999999875 35786 665431
Q ss_pred C---CCCCceeeechheeeeEEEEeCCCC
Q 046254 296 T---PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 296 ~---~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
. ...+.+|||+.|||++|+|||++|.
T Consensus 283 ~~~~~~~~~~ilG~~fl~~~y~vfD~~~~ 311 (318)
T cd05477 283 LPSQNGQPLWILGDVFLRQYYSVYDLGNN 311 (318)
T ss_pred cCCCCCCceEEEcHHHhhheEEEEeCCCC
Confidence 1 1235799999999999999999974
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=8.4e-50 Score=365.32 Aligned_cols=277 Identities=19% Similarity=0.248 Sum_probs=214.5
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEECC
Q 046254 8 YMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYGD 87 (321)
Q Consensus 8 y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~~ 87 (321)
|+++|+||||||++.|+|||||+++||+|..|..+.++.++.|+|++|+||+.. .|.|++.|++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~----------------~~~~~i~Yg~ 64 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSN----------------GEAFSIQYGT 64 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccC----------------CcEEEEEeCC
Confidence 899999999999999999999999999999998422234678999999999874 4799999999
Q ss_pred CCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCc------hHHHhhhc---cCC
Q 046254 88 VYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTS------FMVQLGRL---VPD 158 (321)
Q Consensus 88 g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~~---~~~ 158 (321)
|+ +.|.+++|+|+++ + +.++++.|||+..+.+. .|.....+||||||++..+ ++.+|..+ ..+
T Consensus 65 g~-~~G~~~~D~v~ig-~-----~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~ 136 (316)
T cd05486 65 GS-LTGIIGIDQVTVE-G-----ITVQNQQFAESVSEPGS-TFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELP 136 (316)
T ss_pred cE-EEEEeeecEEEEC-C-----EEEcCEEEEEeeccCcc-cccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCC
Confidence 98 8999999999999 7 79999999998776542 3434578999999987654 35566543 357
Q ss_pred ceEEeecCCC-CCCcceEEeCCCCCCc-----ceEecCC-Cceeeee------------cCCcceEEeccCceEeechHH
Q 046254 159 RFSCCLVQPD-KSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL------------NGQRGCINDCGSVLTVIECEV 219 (321)
Q Consensus 159 ~Fs~~l~~~~-~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~------------~~~~~~iiDSGTt~~~lp~~~ 219 (321)
+||+||.+.. ....|.|+|||+|+.+ +++++.. ..|.++. .....+||||||++++||+++
T Consensus 137 ~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~ 216 (316)
T cd05486 137 MFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSGD 216 (316)
T ss_pred EEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHHH
Confidence 8999998642 2357999999999753 5666543 5565541 123569999999999999999
Q ss_pred HHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcC--CCeEEEE-EecCC-
Q 046254 220 YAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNH--QDSFFFF-FGPAF- 295 (321)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~--~~~~C~~-~~~~~- 295 (321)
+++|.+++.+. ... + ....+|... ..+|+|+|+|+|..++|+|++|++... .+..|+. +....
T Consensus 217 ~~~l~~~~~~~-----~~~--~--~~~~~C~~~----~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 283 (316)
T cd05486 217 IKQLQNYIGAT-----ATD--G--EYGVDCSTL----SLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDI 283 (316)
T ss_pred HHHHHHHhCCc-----ccC--C--cEEEecccc----ccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCC
Confidence 99998776432 111 1 133466543 468999999988899999999998752 2468984 54321
Q ss_pred -CCCCCceeeechheeeeEEEEeCCCC
Q 046254 296 -TPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 296 -~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
...++.||||+.|||++|+|||.+|.
T Consensus 284 ~~~~~~~~ILGd~flr~~y~vfD~~~~ 310 (316)
T cd05486 284 PPPAGPLWILGDVFIRQYYSVFDRGNN 310 (316)
T ss_pred CCCCCCeEEEchHHhcceEEEEeCCCC
Confidence 11235799999999999999999974
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=4.9e-49 Score=374.75 Aligned_cols=280 Identities=19% Similarity=0.239 Sum_probs=219.3
Q ss_pred cccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceE
Q 046254 2 FTLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFY 81 (321)
Q Consensus 2 ~~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~ 81 (321)
...+..|+++|+||||||++.|++||||++|||+|..|..|.++.++.|||++||||+++.+.. +...+
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~-----------~~~~~ 183 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD-----------ESAET 183 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC-----------ccceE
Confidence 3568899999999999999999999999999999999986544567899999999999853211 11256
Q ss_pred EEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCC---------chHHHh
Q 046254 82 GITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDST---------SFMVQL 152 (321)
Q Consensus 82 ~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~---------s~~~ql 152 (321)
.++|++|+ +.|.+++|+|+++ + +.++++.|||++.+.+. .|....+|||||||++.. +++.++
T Consensus 184 ~i~YGsGs-~~G~l~~DtV~ig-~-----l~i~~q~FG~a~~~s~~-~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l 255 (482)
T PTZ00165 184 YIQYGTGE-CVLALGKDTVKIG-G-----LKVKHQSIGLAIEESLH-PFADLPFDGLVGLGFPDKDFKESKKALPIVDNI 255 (482)
T ss_pred EEEeCCCc-EEEEEEEEEEEEC-C-----EEEccEEEEEEEecccc-ccccccccceeecCCCcccccccCCCCCHHHHH
Confidence 79999998 7899999999999 7 89999999999877541 354457899999998864 355566
Q ss_pred hhc---cCCceEEeecCCCCCCcceEEeCCCCCCc-------ceEecCC-Cceeeee-------------cCCcceEEec
Q 046254 153 GRL---VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-------KSLNLPP-NSFTIKL-------------NGQRGCINDC 208 (321)
Q Consensus 153 ~~~---~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-------t~l~i~~-~~~~i~~-------------~~~~~~iiDS 208 (321)
.++ .+++||+||.+.. ..+|+|+|||+|+.. +++++.. ..|.++. .....+|+||
T Consensus 256 ~~qgli~~~~FS~yL~~~~-~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDT 334 (482)
T PTZ00165 256 KKQNLLKRNIFSFYMSKDL-NQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDT 334 (482)
T ss_pred HHcCCcccceEEEEeccCC-CCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcC
Confidence 653 4689999997643 457999999999642 4566543 5666541 1245699999
Q ss_pred cCceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCc-----EEEeCCCceEEEcC
Q 046254 209 GSVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGA-----DLVVEPENVFIFNH 283 (321)
Q Consensus 209 GTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~-----~~~i~~~~y~~~~~ 283 (321)
||+++++|++++++|.+++.+ ...|... ..+|+|+|+|+|. ++.++|++|+++..
T Consensus 335 GTSli~lP~~~~~~i~~~i~~----------------~~~C~~~----~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~ 394 (482)
T PTZ00165 335 GSSLITGPSSVINPLLEKIPL----------------EEDCSNK----DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEG 394 (482)
T ss_pred CCccEeCCHHHHHHHHHHcCC----------------ccccccc----ccCCceEEEECCCCCceEEEEEchHHeeeecc
Confidence 999999999999999887632 2357654 3689999999864 89999999999742
Q ss_pred ----CCeEEE-EEecCCC--CCCCceeeechheeeeEEEEeCCCC
Q 046254 284 ----QDSFFF-FFGPAFT--PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 284 ----~~~~C~-~~~~~~~--~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
.+..|+ ++..... +.++.||||++|||+||+|||++|.
T Consensus 395 ~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~ 439 (482)
T PTZ00165 395 DSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHM 439 (482)
T ss_pred cCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCC
Confidence 246896 5665321 2346899999999999999999974
No 10
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.4e-48 Score=361.92 Aligned_cols=288 Identities=17% Similarity=0.236 Sum_probs=222.6
Q ss_pred ecCCCcE-EEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCC-C-C------------CCCCCC
Q 046254 14 IGDPVKS-LWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKS-P-F------------HCFEGD 78 (321)
Q Consensus 14 iGtP~q~-~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~-~------------~c~~~~ 78 (321)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|.++.|+. + . .|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 6888888 999999999999999874 358899999999999986 2 2 366667
Q ss_pred ceEEEE-ECCCCceEEEEEEEEEEecCCCCCCC---ccccceeEeeccccCCcccccccCcceEEeeCCCCCchHHHhhh
Q 046254 79 CFYGIT-YGDVYETKEVDSLDTSTLLPPDEPSP---VSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFMVQLGR 154 (321)
Q Consensus 79 ~~~~~~-Y~~g~~~~G~l~~D~v~~~~~~~~~~---~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~ 154 (321)
|.|... |++|+.++|.|++|+|+|+ ..+++. ..++++.|||+..+... .+ ....|||||||++++|++.||..
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~-~~~g~~~~~~~~~~~~FGC~~~~~~~-~~-~~~~dGIlGLg~~~lSl~sql~~ 144 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSAN-TTDGSNPLLVVIFNFVFSCAPSLLLK-GL-PPGAQGVAGLGRSPLSLPAQLAS 144 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEec-ccCCCCcccceeCCEEEEcCCccccc-CC-ccccccccccCCCccchHHHhhh
Confidence 988765 8899889999999999998 555442 36889999999886420 11 24589999999999999999976
Q ss_pred c--cCCceEEeecCCCCCCcceEEeCCCCCC---------c--ceEecC-----CCceeee-------------------
Q 046254 155 L--VPDRFSCCLVQPDKSFHSRLEFGDQIIA---------G--KSLNLP-----PNSFTIK------------------- 197 (321)
Q Consensus 155 ~--~~~~Fs~~l~~~~~~~~g~l~~G~~d~~---------~--t~l~i~-----~~~~~i~------------------- 197 (321)
+ .+++|||||++.. ..+|+|+||+.+.. + ++.++. ...|.++
T Consensus 145 ~~~~~~~FS~CL~~~~-~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~ 223 (362)
T cd05489 145 AFGVARKFALCLPSSP-GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSA 223 (362)
T ss_pred hcCCCcceEEEeCCCC-CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcc
Confidence 4 3589999998753 45899999998841 1 222221 1344332
Q ss_pred --ecCCcceEEeccCceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCC-----CCCCCeEEEEEeC--
Q 046254 198 --LNGQRGCINDCGSVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPAR-----FNSFPSMTYHFQG-- 268 (321)
Q Consensus 198 --~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-----~~~~P~i~~~f~g-- 268 (321)
..+.+++||||||++++||+++|++|++++.+.++..+...... .....||..... ...+|+|+|+|+|
T Consensus 224 ~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g 301 (362)
T cd05489 224 NDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAA--VFPELCYPASALGNTRLGYAVPAIDLVLDGGG 301 (362)
T ss_pred ccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCC--CCcCccccCCCcCCcccccccceEEEEEeCCC
Confidence 12345799999999999999999999999998875433322211 123799985422 3579999999997
Q ss_pred cEEEeCCCceEEEcCCCeEEEEEecCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 269 ADLVVEPENVFIFNHQDSFFFFFGPAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 269 ~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
.+|+|+|++|+++..++.+|++|........+.||||+.|||++|++||++|+
T Consensus 302 ~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~ 354 (362)
T cd05489 302 VNWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKS 354 (362)
T ss_pred eEEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCC
Confidence 49999999999998777899999876222245899999999999999999974
No 11
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=9.4e-49 Score=358.94 Aligned_cols=279 Identities=20% Similarity=0.272 Sum_probs=215.1
Q ss_pred cCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 4 LNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 4 ~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
.+..|+++|.||||+|++.|++||||+++||+|+.|..+.+..++.|+|++|+|++.. .|.+.+
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~----------------~~~~~~ 70 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKAN----------------GTEFKI 70 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeC----------------CCEEEE
Confidence 5678999999999999999999999999999999998522234579999999998863 478999
Q ss_pred EECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCchH------HHhhhc--
Q 046254 84 TYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFM------VQLGRL-- 155 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~------~ql~~~-- 155 (321)
.|++|+ ++|.+++|+|+++ + +.++++.|||+..+.+. .+.....+||||||++..+.. .++.++
T Consensus 71 ~y~~g~-~~G~~~~D~v~ig-~-----~~~~~~~f~~a~~~~g~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~ 142 (320)
T cd05488 71 QYGSGS-LEGFVSQDTLSIG-D-----LTIKKQDFAEATSEPGL-AFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGL 142 (320)
T ss_pred EECCce-EEEEEEEeEEEEC-C-----EEECCEEEEEEecCCCc-ceeeeeeceEEecCCccccccCCCCHHHHHHhcCC
Confidence 999998 8999999999999 7 78999999999877652 233356799999999876543 234332
Q ss_pred -cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecCC-Cceeeee-----------cCCcceEEeccCceEeech
Q 046254 156 -VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL-----------NGQRGCINDCGSVLTVIEC 217 (321)
Q Consensus 156 -~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~-----------~~~~~~iiDSGTt~~~lp~ 217 (321)
.+++||+||.+.. ..+|.|+||++|+.. +++++.. ..|.++. .....+||||||++++||+
T Consensus 143 i~~~~FS~~L~~~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp~ 221 (320)
T cd05488 143 LDEPVFSFYLGSSE-EDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAIDTGTSLIALPS 221 (320)
T ss_pred CCCCEEEEEecCCC-CCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCCH
Confidence 3678999999753 468999999999652 4555543 4565441 1345799999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCCCeEEEEEecCC-C
Q 046254 218 EVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQDSFFFFFGPAF-T 296 (321)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~~~~~~-~ 296 (321)
+++++|.+++.+.. . .. . ....+|... ..+|+|+|+|+|.+++|||++|+++.. ..|+..+... .
T Consensus 222 ~~~~~l~~~~~~~~---~-~~--~--~~~~~C~~~----~~~P~i~f~f~g~~~~i~~~~y~~~~~--g~C~~~~~~~~~ 287 (320)
T cd05488 222 DLAEMLNAEIGAKK---S-WN--G--QYTVDCSKV----DSLPDLTFNFDGYNFTLGPFDYTLEVS--GSCISAFTGMDF 287 (320)
T ss_pred HHHHHHHHHhCCcc---c-cC--C--cEEeecccc----ccCCCEEEEECCEEEEECHHHheecCC--CeEEEEEEECcC
Confidence 99999988774321 0 01 1 123456543 468999999998899999999998543 4798654321 1
Q ss_pred --CCCCceeeechheeeeEEEEeCCCC
Q 046254 297 --PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 297 --~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
...+.||||+.|||++|+|||++|.
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~ 314 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNN 314 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCC
Confidence 1235799999999999999999974
No 12
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.4e-49 Score=370.18 Aligned_cols=280 Identities=20% Similarity=0.245 Sum_probs=217.4
Q ss_pred cCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 4 LNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 4 ~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
.+..|+++|+||||||++.|+|||||+++||+|..|..|.++.++.|||++|+||+.. .|.+++
T Consensus 136 ~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~----------------~~~f~i 199 (453)
T PTZ00147 136 ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKD----------------GTKVEM 199 (453)
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEEC----------------CCEEEE
Confidence 4678999999999999999999999999999999998655556789999999999874 478999
Q ss_pred EECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcc-cccccCcceEEeeCCCCCc------hHHHhhhc-
Q 046254 84 TYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFV-SIQKKIIAGIMGLNWDSTS------FMVQLGRL- 155 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~-~~~~~~~~GIlGLg~~~~s------~~~ql~~~- 155 (321)
.|++|+ ++|.+++|+|+++ + +.++ ..|+|+....++. .+.....|||||||++..+ ++.+|..+
T Consensus 200 ~Yg~Gs-vsG~~~~DtVtiG-~-----~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg 271 (453)
T PTZ00147 200 NYVSGT-VSGFFSKDLVTIG-N-----LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQN 271 (453)
T ss_pred EeCCCC-EEEEEEEEEEEEC-C-----EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcC
Confidence 999997 8999999999999 7 6776 5799887665421 1223468999999998654 45566553
Q ss_pred --cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecCC-Cceeeeec--------CCcceEEeccCceEeechHH
Q 046254 156 --VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKLN--------GQRGCINDCGSVLTVIECEV 219 (321)
Q Consensus 156 --~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~~--------~~~~~iiDSGTt~~~lp~~~ 219 (321)
.+++||+||.+.. ...|.|+|||+|+.. ++.++.. ..|.++.. ....+||||||+++++|+++
T Consensus 272 ~I~~~vFS~~L~~~~-~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSGTsli~lP~~~ 350 (453)
T PTZ00147 272 KIEQAVFTFYLPPED-KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSGTSVITVPTEF 350 (453)
T ss_pred CCCccEEEEEecCCC-CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEEEEECCEecCceeEEECCCCchhcCCHHH
Confidence 3578999998653 468999999999763 4556543 56765432 34569999999999999999
Q ss_pred HHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCC--CeEEEE-EecCCC
Q 046254 220 YAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQ--DSFFFF-FGPAFT 296 (321)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~--~~~C~~-~~~~~~ 296 (321)
++++.+++.+.. .+... .....|+. ..+|+|+|+|+|.+++|+|++|+.+..+ ...|+. +....
T Consensus 351 ~~ai~~~l~~~~--~~~~~-----~y~~~C~~-----~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~- 417 (453)
T PTZ00147 351 LNKFVESLDVFK--VPFLP-----LYVTTCNN-----TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPID- 417 (453)
T ss_pred HHHHHHHhCCee--cCCCC-----eEEEeCCC-----CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECC-
Confidence 999998875421 11111 13456764 3589999999988999999999986433 357974 55541
Q ss_pred CCCCceeeechheeeeEEEEeCCCC
Q 046254 297 PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 297 ~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
...+.||||++|||++|+|||.+|.
T Consensus 418 ~~~~~~ILGd~FLr~~YtVFD~~n~ 442 (453)
T PTZ00147 418 LEKNTFILGDPFMRKYFTVFDYDNH 442 (453)
T ss_pred CCCCCEEECHHHhccEEEEEECCCC
Confidence 1235899999999999999999974
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.3e-48 Score=357.50 Aligned_cols=281 Identities=21% Similarity=0.267 Sum_probs=218.7
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCC----CCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCC
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCK----SCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGD 78 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~----~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~ 78 (321)
..+..|+++|.||||+|++.|++||||+++||+|..|. .|. .++.|+|++|+|++.. .
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~Sst~~~~----------------~ 68 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACL--LHNKYDSTKSSTYKKN----------------G 68 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcccc--CCCeECCcCCCCeEEC----------------C
Confidence 45789999999999999999999999999999999997 354 3678999999999874 4
Q ss_pred ceEEEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCc------hHHHh
Q 046254 79 CFYGITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTS------FMVQL 152 (321)
Q Consensus 79 ~~~~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql 152 (321)
|.|.+.|++|+ +.|.+++|+|+++ + +.++++.|||+.++.+. .+.....+||||||++..+ ++.||
T Consensus 69 ~~~~i~Y~~g~-~~G~~~~D~v~ig-~-----~~~~~~~fg~~~~~~~~-~~~~~~~~GilGLg~~~~s~~~~~p~~~~l 140 (329)
T cd05485 69 TEFAIQYGSGS-LSGFLSTDTVSVG-G-----VSVKGQTFAEAINEPGL-TFVAAKFDGILGMGYSSISVDGVVPVFYNM 140 (329)
T ss_pred eEEEEEECCce-EEEEEecCcEEEC-C-----EEECCEEEEEEEecCCc-cccccccceEEEcCCccccccCCCCHHHHH
Confidence 79999999998 8999999999999 7 78899999999876552 3434568999999998765 34566
Q ss_pred hhc---cCCceEEeecCCCC-CCcceEEeCCCCCCc-----ceEecC-CCceeeee-----------cCCcceEEeccCc
Q 046254 153 GRL---VPDRFSCCLVQPDK-SFHSRLEFGDQIIAG-----KSLNLP-PNSFTIKL-----------NGQRGCINDCGSV 211 (321)
Q Consensus 153 ~~~---~~~~Fs~~l~~~~~-~~~g~l~~G~~d~~~-----t~l~i~-~~~~~i~~-----------~~~~~~iiDSGTt 211 (321)
..+ .+++||+||.+... ...|+|+||++|+.. +++++. ...|.++. ..+..+||||||+
T Consensus 141 ~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiDSGtt 220 (329)
T cd05485 141 VNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIADTGTS 220 (329)
T ss_pred HhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEccCCc
Confidence 553 35799999986432 257999999999652 455654 35666541 2334699999999
Q ss_pred eEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCC--CeEEE
Q 046254 212 LTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQ--DSFFF 289 (321)
Q Consensus 212 ~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~--~~~C~ 289 (321)
+++||++++++|.+++.+.. ... . ....+|... ..+|+|+|+|+|.++.|+|++|+++..+ ...|+
T Consensus 221 ~~~lP~~~~~~l~~~~~~~~----~~~--~--~~~~~C~~~----~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~ 288 (329)
T cd05485 221 LIAGPVDEIEKLNNAIGAKP----IIG--G--EYMVNCSAI----PSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICL 288 (329)
T ss_pred ceeCCHHHHHHHHHHhCCcc----ccC--C--cEEEecccc----ccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEe
Confidence 99999999999988875421 111 1 123455543 4579999999888999999999998653 35798
Q ss_pred E-EecCCC--CCCCceeeechheeeeEEEEeCCCC
Q 046254 290 F-FGPAFT--PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 290 ~-~~~~~~--~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
. ++.... ..++.+|||+.|||++|+|||++|.
T Consensus 289 ~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~ 323 (329)
T cd05485 289 SGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNN 323 (329)
T ss_pred eeEEECcCCCCCCCeEEEchHHhccceEEEeCCCC
Confidence 4 554311 2235799999999999999999974
No 14
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.1e-48 Score=364.54 Aligned_cols=280 Identities=22% Similarity=0.251 Sum_probs=214.9
Q ss_pred cCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 4 LNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 4 ~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
.+.+|+++|.||||+|++.|+|||||+++||+|+.|..+.++.++.|||++|+|++.. .|.+++
T Consensus 135 ~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~----------------~~~~~i 198 (450)
T PTZ00013 135 ANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKD----------------GTKVDI 198 (450)
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccC----------------CcEEEE
Confidence 3568999999999999999999999999999999998533345679999999999874 478999
Q ss_pred EECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcc-cccccCcceEEeeCCCCCc------hHHHhhhc-
Q 046254 84 TYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFV-SIQKKIIAGIMGLNWDSTS------FMVQLGRL- 155 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~-~~~~~~~~GIlGLg~~~~s------~~~ql~~~- 155 (321)
.|++|+ +.|.+++|+|+++ + +.++ ..|+++.+..++. .+.....|||||||++..+ ++.+|..+
T Consensus 199 ~YG~Gs-v~G~~~~Dtv~iG-~-----~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg 270 (450)
T PTZ00013 199 TYGSGT-VKGFFSKDLVTLG-H-----LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQN 270 (450)
T ss_pred EECCce-EEEEEEEEEEEEC-C-----EEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhcc
Confidence 999998 8999999999999 7 6766 6788887654310 2333468999999988653 56677654
Q ss_pred --cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecCC-Cceeeeec--------CCcceEEeccCceEeechHH
Q 046254 156 --VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKLN--------GQRGCINDCGSVLTVIECEV 219 (321)
Q Consensus 156 --~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~~--------~~~~~iiDSGTt~~~lp~~~ 219 (321)
.+++||+||.+.. ...|.|+|||+|+.. ++.++.. ..|.++.. ....+||||||+++++|+++
T Consensus 271 ~I~~~vFS~~L~~~~-~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~v~~G~~~~~~~~aIlDSGTSli~lP~~~ 349 (450)
T PTZ00013 271 KIDNALFTFYLPVHD-VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMQKANVIVDSGTTTITAPSEF 349 (450)
T ss_pred CcCCcEEEEEecCCC-CCCCEEEECCcCccccccceEEEEcCcCceEEEEEEEEECceeccccceEECCCCccccCCHHH
Confidence 3578999998653 468999999999763 4566543 56665532 34569999999999999999
Q ss_pred HHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcC--CCeEEEE-EecCCC
Q 046254 220 YAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNH--QDSFFFF-FGPAFT 296 (321)
Q Consensus 220 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~--~~~~C~~-~~~~~~ 296 (321)
++++.+++.+.. . .... .....|+. ..+|+|+|+|+|.+++|+|++|+.+.. ++..|+. +....
T Consensus 350 ~~~i~~~l~~~~--~---~~~~--~y~~~C~~-----~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~- 416 (450)
T PTZ00013 350 LNKFFANLNVIK--V---PFLP--FYVTTCDN-----KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVD- 416 (450)
T ss_pred HHHHHHHhCCee--c---CCCC--eEEeecCC-----CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECC-
Confidence 999888774321 1 1111 13456653 368999999998899999999997643 2468974 44431
Q ss_pred CCCCceeeechheeeeEEEEeCCCC
Q 046254 297 PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 297 ~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
...+.||||++|||++|+|||++|.
T Consensus 417 ~~~~~~ILGd~FLr~~Y~VFD~~n~ 441 (450)
T PTZ00013 417 IDDNTFILGDPFMRKYFTVFDYDKE 441 (450)
T ss_pred CCCCCEEECHHHhccEEEEEECCCC
Confidence 2236899999999999999999974
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.7e-48 Score=354.18 Aligned_cols=281 Identities=16% Similarity=0.249 Sum_probs=215.8
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCC--CCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCce
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSC--YEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCF 80 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C--~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~ 80 (321)
..+..|+++|+||||+|+++|++||||+++||+|..|..| .+..++.|+|++|+||+.. .|.
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~----------------~~~ 67 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKEN----------------GTE 67 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeEC----------------CEE
Confidence 3578999999999999999999999999999999888752 2234679999999999874 479
Q ss_pred EEEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCc------hHHHhhh
Q 046254 81 YGITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTS------FMVQLGR 154 (321)
Q Consensus 81 ~~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~~ 154 (321)
|++.|++|+ ++|.+++|+|+++ + +.+ ++.||++...... .+.....+||||||++..+ ++.+|..
T Consensus 68 ~~~~Yg~g~-~~G~~~~D~v~~g-~-----~~~-~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 68 FTIHYASGT-VKGFLSQDIVTVG-G-----IPV-TQMFGEVTALPAI-PFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred EEEEeCCce-EEEEEeeeEEEEC-C-----EEe-eEEEEEEEeccCC-ccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 999999998 8999999999999 6 555 4789998875431 2323468999999987653 3444444
Q ss_pred c---cCCceEEeecCCC-CCCcceEEeCCCCCCc-----ceEecC-CCceeeee------------cCCcceEEeccCce
Q 046254 155 L---VPDRFSCCLVQPD-KSFHSRLEFGDQIIAG-----KSLNLP-PNSFTIKL------------NGQRGCINDCGSVL 212 (321)
Q Consensus 155 ~---~~~~Fs~~l~~~~-~~~~g~l~~G~~d~~~-----t~l~i~-~~~~~i~~------------~~~~~~iiDSGTt~ 212 (321)
+ .+++||+||.+.. ....|+|+||++|+.. +++++. ...|.++. ..+..+||||||++
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts~ 218 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTGASF 218 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCCEEEECCCccc
Confidence 3 4689999998753 2357999999999763 445544 35666541 23356999999999
Q ss_pred EeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCC--CeEEE-
Q 046254 213 TVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQ--DSFFF- 289 (321)
Q Consensus 213 ~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~--~~~C~- 289 (321)
++||+++++++.+++.+.. . . + ....+|... ..+|.|+|+|+|..++|++++|+++..+ +..|+
T Consensus 219 ~~lP~~~~~~l~~~~~~~~---~--~--~--~y~~~C~~~----~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~ 285 (326)
T cd05487 219 ISGPTSSISKLMEALGAKE---R--L--G--DYVVKCNEV----PTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTV 285 (326)
T ss_pred hhCcHHHHHHHHHHhCCcc---c--C--C--CEEEecccc----CCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEE
Confidence 9999999999998875432 1 1 1 134566653 4689999999888999999999998654 46787
Q ss_pred EEecCCC--CCCCceeeechheeeeEEEEeCCCC
Q 046254 290 FFGPAFT--PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 290 ~~~~~~~--~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
++..... ..++.+|||+.|||++|+|||++|.
T Consensus 286 ~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~ 319 (326)
T cd05487 286 AFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNN 319 (326)
T ss_pred EEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCC
Confidence 5554321 1235899999999999999999974
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-47 Score=351.22 Aligned_cols=269 Identities=22% Similarity=0.317 Sum_probs=210.7
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCC---CCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCc
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCK---SCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDC 79 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~---~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~ 79 (321)
..+..|+++|.||||||++.|+|||||+++||+|+.|. .|.. ++.|+|++|+||+.. ..
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~--~~~y~~~~SsT~~~~----------------~~ 67 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF--HSKYKSSKSSTYKKN----------------GT 67 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc--cCcCCcccCCCcccC----------------CC
Confidence 35789999999999999999999999999999999996 5864 578999999999874 35
Q ss_pred eEEEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCc------hHHHhh
Q 046254 80 FYGITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTS------FMVQLG 153 (321)
Q Consensus 80 ~~~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s------~~~ql~ 153 (321)
.+.+.|++|+ +.|.+++|+|+++ + ..++++.||+++.+.+. .+.....+||||||++..+ +..+|.
T Consensus 68 ~~~i~Yg~G~-~~G~~~~D~v~ig-~-----~~v~~~~f~~~~~~~~~-~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 68 SASIQYGTGS-ISGFFSQDSVTVG-D-----LVVKNQVFIEATKEPGL-TFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred EEEEEcCCce-EEEEEEeeEEEEC-C-----EEECCEEEEEEEecCCc-cccccccceeccccccchhhcCCCCHHHHHH
Confidence 7899999998 8999999999999 7 78999999999876542 3434578999999987654 334554
Q ss_pred hc---cCCceEEeecCCC-CCCcceEEeCCCCCCc-----ceEecCC-Cceeeee-------------cCCcceEEeccC
Q 046254 154 RL---VPDRFSCCLVQPD-KSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL-------------NGQRGCINDCGS 210 (321)
Q Consensus 154 ~~---~~~~Fs~~l~~~~-~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~-------------~~~~~~iiDSGT 210 (321)
.+ .+++||+||.+.. ....|.|+||++|+.+ +++++.. ..|.++. .....+||||||
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGT 219 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGT 219 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCC
Confidence 43 3579999998642 1358999999999763 4556543 4565541 123469999999
Q ss_pred ceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCC--CeEE
Q 046254 211 VLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQ--DSFF 288 (321)
Q Consensus 211 t~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~--~~~C 288 (321)
++++||+++++++. ....|+.. ..+|+|+|+|+|..++|+|++|++...+ ...|
T Consensus 220 s~~~lP~~~~~~i~--------------------~~~~C~~~----~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C 275 (317)
T cd06098 220 SLLAGPTTIVTQIN--------------------SAVDCNSL----SSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQC 275 (317)
T ss_pred cceeCCHHHHHhhh--------------------ccCCcccc----ccCCcEEEEECCEEEEEChHHeEEeecCCCCCEE
Confidence 99999998776542 13457654 3589999999888999999999987654 3589
Q ss_pred EE-EecCCC--CCCCceeeechheeeeEEEEeCCCC
Q 046254 289 FF-FGPAFT--PRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 289 ~~-~~~~~~--~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
++ +..... ..++.||||+.|||++|+|||++|.
T Consensus 276 ~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~ 311 (317)
T cd06098 276 ISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNL 311 (317)
T ss_pred eceEEECCCCCCCCCeEEechHHhcccEEEEeCCCC
Confidence 85 443211 1235899999999999999999984
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.7e-45 Score=329.97 Aligned_cols=238 Identities=24% Similarity=0.396 Sum_probs=189.7
Q ss_pred ceEEEEEEecCCCcEEEEEEEcCCCceeEeCC-CCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEE
Q 046254 6 HTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQ-PCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGIT 84 (321)
Q Consensus 6 ~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~-~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~ 84 (321)
++|+++|.||||||++.|++||||+++||+|. +|..| .|.|++.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-----------------------------------~c~~~i~ 45 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-----------------------------------QCDYEIE 45 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-----------------------------------cCccEeE
Confidence 57999999999999999999999999999984 67666 1688999
Q ss_pred ECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCchHHHhhhc--cCCceEE
Q 046254 85 YGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFMVQLGRL--VPDRFSC 162 (321)
Q Consensus 85 Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~--~~~~Fs~ 162 (321)
|++|+.++|.+++|+|+++ ..++. ..++++.|||+..+.+.........+||||||+++.+++.||+.+ ++++||+
T Consensus 46 Ygd~~~~~G~~~~D~v~~~-~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 46 YADGGSSMGVLVTDIFSLK-LTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eCCCCceEEEEEEEEEEEe-ecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 9987779999999999997 44333 467899999998765410112356899999999999999999864 5789999
Q ss_pred eecCCCCCCcceEEeCCCCCCc---ceEecCC----Cceeeee-----------cCCcceEEeccCceEeechHHHHHHH
Q 046254 163 CLVQPDKSFHSRLEFGDQIIAG---KSLNLPP----NSFTIKL-----------NGQRGCINDCGSVLTVIECEVYAVLT 224 (321)
Q Consensus 163 ~l~~~~~~~~g~l~~G~~d~~~---t~l~i~~----~~~~i~~-----------~~~~~~iiDSGTt~~~lp~~~~~~l~ 224 (321)
||.+ ..+|.|+||+..... .+.++.. ..|.++. .....+||||||++++||+++|
T Consensus 124 ~l~~---~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y---- 196 (273)
T cd05475 124 CLSS---NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY---- 196 (273)
T ss_pred EccC---CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc----
Confidence 9987 357999999654321 3334332 4565541 2345699999999999999876
Q ss_pred HHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeC----cEEEeCCCceEEEcCCCeEEEEEecCCC-CCC
Q 046254 225 AEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQG----ADLVVEPENVFIFNHQDSFFFFFGPAFT-PRK 299 (321)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g----~~~~i~~~~y~~~~~~~~~C~~~~~~~~-~~~ 299 (321)
+|+|+|+|++ .+++|||++|++...++..|++++.... ...
T Consensus 197 ----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~ 242 (273)
T cd05475 197 ----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLG 242 (273)
T ss_pred ----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCC
Confidence 3889999987 4999999999998766779999886521 123
Q ss_pred CceeeechheeeeEEEEeCCCC
Q 046254 300 GKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 300 ~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
+.||||+.|||++|+|||+++.
T Consensus 243 ~~~ilG~~~l~~~~~vfD~~~~ 264 (273)
T cd05475 243 NTNIIGDISMQGLMVIYDNEKQ 264 (273)
T ss_pred ceEEECceEEEeeEEEEECcCC
Confidence 5899999999999999999974
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.1e-45 Score=344.36 Aligned_cols=286 Identities=14% Similarity=0.153 Sum_probs=204.4
Q ss_pred ceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEE
Q 046254 6 HTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITY 85 (321)
Q Consensus 6 ~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y 85 (321)
..|+++|.||||+|++.|+|||||+++||+|+.|..| ++.|+|++|+||+.. .|.|++.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~----------------~~~~~i~Y 61 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDL----------------GKGVTVPY 61 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccC----------------CceEEEEE
Confidence 4799999999999999999999999999999887433 568999999999875 47899999
Q ss_pred CCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccc-cccCcceEEeeCCCCCc--------hHHHhhhc-
Q 046254 86 GDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSI-QKKIIAGIMGLNWDSTS--------FMVQLGRL- 155 (321)
Q Consensus 86 ~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~-~~~~~~GIlGLg~~~~s--------~~~ql~~~- 155 (321)
++|+ ++|.+++|+|+|+ +.. .....+.|++..++.+ .+ .....+||||||++.++ +..+|..+
T Consensus 62 g~Gs-~~G~~~~D~v~ig-~~~---~~~~~~~~~~~~~~~~--~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~ 134 (364)
T cd05473 62 TQGS-WEGELGTDLVSIP-KGP---NVTFRANIAAITESEN--FFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQT 134 (364)
T ss_pred Ccce-EEEEEEEEEEEEC-CCC---ccceEEeeEEEecccc--ceecccccceeeeecccccccCCCCCCCHHHHHHhcc
Confidence 9998 7999999999998 521 0111234566655554 22 22357999999987653 33344432
Q ss_pred -cCCceEEeecCC--------CCCCcceEEeCCCCCCc-----ceEecCC-Cceeeee------------c----CCcce
Q 046254 156 -VPDRFSCCLVQP--------DKSFHSRLEFGDQIIAG-----KSLNLPP-NSFTIKL------------N----GQRGC 204 (321)
Q Consensus 156 -~~~~Fs~~l~~~--------~~~~~g~l~~G~~d~~~-----t~l~i~~-~~~~i~~------------~----~~~~~ 204 (321)
++++||++|... .....|.|+||++|+.. +++++.. ..|.++. . ....+
T Consensus 135 ~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ 214 (364)
T cd05473 135 GIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKA 214 (364)
T ss_pred CCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccE
Confidence 456899977421 11247999999999653 3445432 3444331 0 11369
Q ss_pred EEeccCceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCC-CCCCCeEEEEEeCc------EEEeCCCc
Q 046254 205 INDCGSVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPAR-FNSFPSMTYHFQGA------DLVVEPEN 277 (321)
Q Consensus 205 iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~~~f~g~------~~~i~~~~ 277 (321)
||||||++++||+++|++|.+++.++... +.............|+..... ...+|+|+|+|+|. +++|+|++
T Consensus 215 ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~ 293 (364)
T cd05473 215 IVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQL 293 (364)
T ss_pred EEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHH
Confidence 99999999999999999999999887521 111110000123578865432 23689999999862 68999999
Q ss_pred eEEEcCC---CeEEEEEecCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 278 VFIFNHQ---DSFFFFFGPAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 278 y~~~~~~---~~~C~~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
|+..... +..|+++... +..+.+|||+.|||++|+|||++|.
T Consensus 294 Y~~~~~~~~~~~~C~~~~~~--~~~~~~ILG~~flr~~yvvfD~~~~ 338 (364)
T cd05473 294 YLRPVEDHGTQLDCYKFAIS--QSTNGTVIGAVIMEGFYVVFDRANK 338 (364)
T ss_pred hhhhhccCCCcceeeEEeee--cCCCceEEeeeeEcceEEEEECCCC
Confidence 9986532 4689865433 2245799999999999999999974
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.4e-45 Score=327.80 Aligned_cols=243 Identities=17% Similarity=0.245 Sum_probs=193.6
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEECC
Q 046254 8 YMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYGD 87 (321)
Q Consensus 8 y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~~ 87 (321)
|+++|+||||+|++.|++||||+++||+|+.|..|..+.++.|++++|+|++..+ .|.|.+.|++
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~---------------~~~~~i~Y~~ 65 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP---------------GATWSISYGD 65 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC---------------CcEEEEEeCC
Confidence 8999999999999999999999999999999999987778889999999998742 4799999999
Q ss_pred CCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCc---------hHHHhhhc-cC
Q 046254 88 VYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTS---------FMVQLGRL-VP 157 (321)
Q Consensus 88 g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s---------~~~ql~~~-~~ 157 (321)
|+.+.|.+++|+|+|+ + ..++++.|||++...+. .+.....+||||||++..+ +..++..+ .+
T Consensus 66 G~~~~G~~~~D~v~ig-~-----~~~~~~~fg~~~~~~~~-~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (278)
T cd06097 66 GSSASGIVYTDTVSIG-G-----VEVPNQAIELATAVSAS-FFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDA 138 (278)
T ss_pred CCeEEEEEEEEEEEEC-C-----EEECCeEEEEEeecCcc-ccccccccceeeeccccccccccCCCCCHHHHHHHhccC
Confidence 9879999999999999 7 78999999999876541 2334578999999987654 33344432 35
Q ss_pred CceEEeecCCCCCCcceEEeCCCCCCc-----ceEecC--CCceeeee------------cCCcceEEeccCceEeechH
Q 046254 158 DRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLP--PNSFTIKL------------NGQRGCINDCGSVLTVIECE 218 (321)
Q Consensus 158 ~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~--~~~~~i~~------------~~~~~~iiDSGTt~~~lp~~ 218 (321)
++||+||.+ ...|+|+|||+|+.+ ++++|. ...|.++. .....+||||||+++++|++
T Consensus 139 ~~Fs~~l~~---~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 139 PLFTADLRK---AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred ceEEEEecC---CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 799999986 357999999999753 566654 35666542 13456999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCCCeEEEEEecCCCCC
Q 046254 219 VYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQDSFFFFFGPAFTPR 298 (321)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~ 298 (321)
+++++.+++.... + . ....+|..+|.. .+|+|+|+|
T Consensus 216 ~~~~l~~~l~g~~--~--~-------~~~~~~~~~C~~-~~P~i~f~~-------------------------------- 251 (278)
T cd06097 216 IVEAYYSQVPGAY--Y--D-------SEYGGWVFPCDT-TLPDLSFAV-------------------------------- 251 (278)
T ss_pred HHHHHHHhCcCCc--c--c-------CCCCEEEEECCC-CCCCEEEEE--------------------------------
Confidence 9999988773211 0 1 112344444542 289999999
Q ss_pred CCceeeechheeeeEEEEeCCCC
Q 046254 299 KGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 299 ~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
.||||+.|||++|+|||++|.
T Consensus 252 --~~ilGd~fl~~~y~vfD~~~~ 272 (278)
T cd06097 252 --FSILGDVFLKAQYVVFDVGGP 272 (278)
T ss_pred --EEEEcchhhCceeEEEcCCCc
Confidence 599999999999999999984
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.2e-43 Score=315.20 Aligned_cols=222 Identities=35% Similarity=0.553 Sum_probs=185.6
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEEC
Q 046254 7 TYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYG 86 (321)
Q Consensus 7 ~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~ 86 (321)
+|+++|+||||||++.|+|||||+++||+| | .|.+.|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~-------------------------------------~~~~~Y~ 38 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C-------------------------------------SYEYSYG 38 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C-------------------------------------ceEeEeC
Confidence 599999999999999999999999999985 1 4589999
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCc--cccceeEeeccccCCcccccccCcceEEeeCCCCCchHHHhhhccCCceEEee
Q 046254 87 DVYETKEVDSLDTSTLLPPDEPSPV--SVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFMVQLGRLVPDRFSCCL 164 (321)
Q Consensus 87 ~g~~~~G~l~~D~v~~~~~~~~~~~--~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs~~l 164 (321)
+|+.++|.+++|+|+|+ + . .++++.|||+.++.+ +.....+||||||+...|++.||+.+- ++||+||
T Consensus 39 dg~~~~G~~~~D~v~~g-~-----~~~~~~~~~Fg~~~~~~~---~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l 108 (265)
T cd05476 39 DGSSTSGVLATETFTFG-D-----SSVSVPNVAFGCGTDNEG---GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCL 108 (265)
T ss_pred CCceeeeeEEEEEEEec-C-----CCCccCCEEEEecccccC---CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEc
Confidence 88889999999999999 7 5 788999999998864 223578999999999999999998744 6999999
Q ss_pred cCCC-CCCcceEEeCCCCCC--c--ceEecC-----CCceeeee---------------------cCCcceEEeccCceE
Q 046254 165 VQPD-KSFHSRLEFGDQIIA--G--KSLNLP-----PNSFTIKL---------------------NGQRGCINDCGSVLT 213 (321)
Q Consensus 165 ~~~~-~~~~g~l~~G~~d~~--~--t~l~i~-----~~~~~i~~---------------------~~~~~~iiDSGTt~~ 213 (321)
.+.. ....|+|+||++|++ + ++.++. ...|.++. .....+||||||+++
T Consensus 109 ~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 109 VPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred cCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 8742 246899999999974 2 444442 24555431 234569999999999
Q ss_pred eechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEe-CcEEEeCCCceEEEcCCCeEEEEEe
Q 046254 214 VIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQ-GADLVVEPENVFIFNHQDSFFFFFG 292 (321)
Q Consensus 214 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~-g~~~~i~~~~y~~~~~~~~~C~~~~ 292 (321)
+||+++| |+|+|+|+ |.++.+++++|++....+..|+++.
T Consensus 189 ~lp~~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~ 229 (265)
T cd05476 189 YLPDPAY---------------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAIL 229 (265)
T ss_pred EcCcccc---------------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEe
Confidence 9999877 78999999 5599999999999776678999988
Q ss_pred cCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 293 PAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 293 ~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
.. ...+.+|||+.|||++|++||+++.
T Consensus 230 ~~--~~~~~~ilG~~fl~~~~~vFD~~~~ 256 (265)
T cd05476 230 SS--SSGGVSILGNIQQQNFLVEYDLENS 256 (265)
T ss_pred cC--CCCCcEEEChhhcccEEEEEECCCC
Confidence 76 3457899999999999999999974
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.4e-42 Score=315.84 Aligned_cols=277 Identities=22% Similarity=0.368 Sum_probs=218.3
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCC-CCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEE
Q 046254 7 TYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSC-YEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITY 85 (321)
Q Consensus 7 ~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C-~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y 85 (321)
+|+++|.||||+|++.|++||||+++||+++.|..| .......|++++|+|++... +.+.+.|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------~~~~~~y 64 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------KPFSISY 64 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE----------------EEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce----------------eeeeeec
Confidence 599999999999999999999999999999999876 44456799999999999864 5789999
Q ss_pred CCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCC-------CchHHHhhhc---
Q 046254 86 GDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDS-------TSFMVQLGRL--- 155 (321)
Q Consensus 86 ~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~-------~s~~~ql~~~--- 155 (321)
++|+ ++|.+++|+|+|+ + +.+.++.||++....+. .+.....+||||||++. .+++.+|..+
T Consensus 65 ~~g~-~~G~~~~D~v~ig-~-----~~~~~~~f~~~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i 136 (317)
T PF00026_consen 65 GDGS-VSGNLVSDTVSIG-G-----LTIPNQTFGLADSYSGD-PFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLI 136 (317)
T ss_dssp TTEE-EEEEEEEEEEEET-T-----EEEEEEEEEEEEEEESH-HHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSS
T ss_pred cCcc-cccccccceEeee-e-----ccccccceecccccccc-ccccccccccccccCCcccccccCCcceecchhhccc
Confidence 9999 9999999999999 7 88999999999886441 23346789999999653 4677787765
Q ss_pred cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecC-CCceeeee------------cCCcceEEeccCceEeech
Q 046254 156 VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLP-PNSFTIKL------------NGQRGCINDCGSVLTVIEC 217 (321)
Q Consensus 156 ~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~-~~~~~i~~------------~~~~~~iiDSGTt~~~lp~ 217 (321)
.+++||++|.+.. ...|.|+||++|... +++++. ...|.+.. .....++|||||++++||+
T Consensus 137 ~~~~fsl~l~~~~-~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~ 215 (317)
T PF00026_consen 137 SSNVFSLYLNPSD-SQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLPR 215 (317)
T ss_dssp SSSEEEEEEESTT-SSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEEH
T ss_pred cccccceeeeecc-cccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeecccccccccccc
Confidence 4688999998864 468999999999764 455554 35666541 1224699999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCCC--eEEEE-EecC
Q 046254 218 EVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQD--SFFFF-FGPA 294 (321)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~--~~C~~-~~~~ 294 (321)
+++++|.+++...... . .....|... ..+|.|+|+|++.++.|||++|+.+.... ..|+. +...
T Consensus 216 ~~~~~i~~~l~~~~~~-----~----~~~~~c~~~----~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~ 282 (317)
T PF00026_consen 216 SIFDAIIKALGGSYSD-----G----VYSVPCNST----DSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPM 282 (317)
T ss_dssp HHHHHHHHHHTTEEEC-----S----EEEEETTGG----GGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEE
T ss_pred hhhHHHHhhhcccccc-----e----eEEEecccc----cccceEEEeeCCEEEEecchHhcccccccccceeEeeeecc
Confidence 9999999998665321 0 123444332 45899999999889999999999987763 37874 4441
Q ss_pred C-CCCCCceeeechheeeeEEEEeCCCC
Q 046254 295 F-TPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 295 ~-~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
. ....+.+|||..|||++|++||.++.
T Consensus 283 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~ 310 (317)
T PF00026_consen 283 DSSDDSDDWILGSPFLRNYYVVFDYENN 310 (317)
T ss_dssp SSTTSSSEEEEEHHHHTTEEEEEETTTT
T ss_pred cccccCCceEecHHHhhceEEEEeCCCC
Confidence 1 13357899999999999999999974
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.6e-41 Score=306.38 Aligned_cols=241 Identities=22% Similarity=0.353 Sum_probs=192.4
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEEC
Q 046254 7 TYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYG 86 (321)
Q Consensus 7 ~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~ 86 (321)
.|+++|.||||+|++.|++||||+++||+ .|++.|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------~~~~~Y~ 37 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------DFSISYG 37 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------eeEEEec
Confidence 69999999999999999999999999997 1368999
Q ss_pred CCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCC-----------chHHHhhhc
Q 046254 87 DVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDST-----------SFMVQLGRL 155 (321)
Q Consensus 87 ~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~ 155 (321)
+|+.+.|.+++|+|+++ + ..++++.|||+.... ..+||||||+... +++.||..+
T Consensus 38 ~g~~~~G~~~~D~v~~g-~-----~~~~~~~fg~~~~~~--------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 38 DGTSASGTWGTDTVSIG-G-----ATVKNLQFAVANSTS--------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred cCCcEEEEEEEEEEEEC-C-----eEecceEEEEEecCC--------CCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 97779999999999999 7 688899999998843 3699999998875 688888764
Q ss_pred ---cCCceEEeecCCCCCCcceEEeCCCCCCc-----ceEecCC-------Cceeee---------------ecCCcceE
Q 046254 156 ---VPDRFSCCLVQPDKSFHSRLEFGDQIIAG-----KSLNLPP-------NSFTIK---------------LNGQRGCI 205 (321)
Q Consensus 156 ---~~~~Fs~~l~~~~~~~~g~l~~G~~d~~~-----t~l~i~~-------~~~~i~---------------~~~~~~~i 205 (321)
.++.||+||.+.. ...|.|+||++|... +++++.. ..|.++ ......+|
T Consensus 104 g~i~~~~Fsl~l~~~~-~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~i 182 (295)
T cd05474 104 GLIKKNAYSLYLNDLD-ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPAL 182 (295)
T ss_pred CcccceEEEEEeCCCC-CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEE
Confidence 3578999998753 368999999999653 3444432 344443 12345799
Q ss_pred EeccCceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCCCCCCCeEEEEEeCcEEEeCCCceEEEcCC-
Q 046254 206 NDCGSVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPARFNSFPSMTYHFQGADLVVEPENVFIFNHQ- 284 (321)
Q Consensus 206 iDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~g~~~~i~~~~y~~~~~~- 284 (321)
|||||++++||+++|++|.+++.+.... ... .....|+... . |+|+|+|+|.+++||+++|+++...
T Consensus 183 iDSGt~~~~lP~~~~~~l~~~~~~~~~~---~~~----~~~~~C~~~~----~-p~i~f~f~g~~~~i~~~~~~~~~~~~ 250 (295)
T cd05474 183 LDSGTTLTYLPSDIVDAIAKQLGATYDS---DEG----LYVVDCDAKD----D-GSLTFNFGGATISVPLSDLVLPASTD 250 (295)
T ss_pred ECCCCccEeCCHHHHHHHHHHhCCEEcC---CCc----EEEEeCCCCC----C-CEEEEEECCeEEEEEHHHhEeccccC
Confidence 9999999999999999999998765321 111 2456676542 3 9999999998999999999998752
Q ss_pred ---CeEEE-EEecCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 285 ---DSFFF-FFGPAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 285 ---~~~C~-~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
+..|+ ++... . .+.+|||+.|||++|++||.+|.
T Consensus 251 ~~~~~~C~~~i~~~--~-~~~~iLG~~fl~~~y~vfD~~~~ 288 (295)
T cd05474 251 DGGDGACYLGIQPS--T-SDYNILGDTFLRSAYVVYDLDNN 288 (295)
T ss_pred CCCCCCeEEEEEeC--C-CCcEEeChHHhhcEEEEEECCCC
Confidence 46775 66655 2 26899999999999999999974
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.4e-40 Score=296.70 Aligned_cols=242 Identities=28% Similarity=0.450 Sum_probs=194.5
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCC--ccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEE
Q 046254 8 YMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPI--YNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITY 85 (321)
Q Consensus 8 y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~--f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y 85 (321)
|+++|.||||+|++.|++||||+++||+|..|..|..+..+. |++..|+++.. ..|.+.+.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~----------------~~~~~~~~Y 64 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD----------------TGCTFSITY 64 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec----------------CCCEEEEEE
Confidence 789999999999999999999999999999999887655544 67777766543 468999999
Q ss_pred CCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCC------CchHHHhhhc---c
Q 046254 86 GDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDS------TSFMVQLGRL---V 156 (321)
Q Consensus 86 ~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~---~ 156 (321)
++|+ +.|.+++|+|+++ + ..++++.|||+..... .+.....+||||||+.. .+++.||..+ .
T Consensus 65 ~~g~-~~g~~~~D~v~~~-~-----~~~~~~~fg~~~~~~~--~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~ 135 (283)
T cd05471 65 GDGS-VTGGLGTDTVTIG-G-----LTIPNQTFGCATSESG--DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLIS 135 (283)
T ss_pred CCCe-EEEEEEEeEEEEC-C-----EEEeceEEEEEeccCC--cccccccceEeecCCcccccccCCCHHHHHHHCCCCC
Confidence 9987 8999999999999 7 6789999999998875 34346789999999988 7899999875 4
Q ss_pred CCceEEeecCCC-CCCcceEEeCCCCCCc-----ceEecC---CCceeeee-------------cCCcceEEeccCceEe
Q 046254 157 PDRFSCCLVQPD-KSFHSRLEFGDQIIAG-----KSLNLP---PNSFTIKL-------------NGQRGCINDCGSVLTV 214 (321)
Q Consensus 157 ~~~Fs~~l~~~~-~~~~g~l~~G~~d~~~-----t~l~i~---~~~~~i~~-------------~~~~~~iiDSGTt~~~ 214 (321)
+++||+||.+.. ....|.|+||++|+.. .++++. ...|.+.. .....+||||||++++
T Consensus 136 ~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~ 215 (283)
T cd05471 136 SPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIY 215 (283)
T ss_pred CCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEe
Confidence 689999999842 1468999999999752 344432 34555431 1345799999999999
Q ss_pred echHHHHHHHHHHHHHhccCCcccccccCCCccceEecCCC-CCCCCeEEEEEeCcEEEeCCCceEEEcCCCeEEEEEec
Q 046254 215 IECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPAR-FNSFPSMTYHFQGADLVVEPENVFIFNHQDSFFFFFGP 293 (321)
Q Consensus 215 lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~P~i~~~f~g~~~~i~~~~y~~~~~~~~~C~~~~~ 293 (321)
||+++|++|.+++.+.... ...|+...+. ...+|+|+|+|
T Consensus 216 lp~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~~p~i~f~f--------------------------- 256 (283)
T cd05471 216 LPSSVYDAILKALGAAVSS------------SDGGYGVDCSPCDTLPDITFTF--------------------------- 256 (283)
T ss_pred CCHHHHHHHHHHhCCcccc------------cCCcEEEeCcccCcCCCEEEEE---------------------------
Confidence 9999999999998765421 1223333332 36789999999
Q ss_pred CCCCCCCceeeechheeeeEEEEeCCC
Q 046254 294 AFTPRKGKTILGARHQHNTQFVYDLDT 320 (321)
Q Consensus 294 ~~~~~~~~~ilG~~fl~~~~vvfD~~~ 320 (321)
.+|||+.|||++|++||.++
T Consensus 257 -------~~ilG~~fl~~~y~vfD~~~ 276 (283)
T cd05471 257 -------LWILGDVFLRNYYTVFDLDN 276 (283)
T ss_pred -------EEEccHhhhhheEEEEeCCC
Confidence 58999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=3.3e-34 Score=237.15 Aligned_cols=158 Identities=32% Similarity=0.594 Sum_probs=129.0
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCC-C-C--C--CCCCCceE
Q 046254 8 YMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKS-P-F--H--CFEGDCFY 81 (321)
Q Consensus 8 y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~-~-~--~--c~~~~~~~ 81 (321)
|+++|+||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.++.|.. + . . |.+..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999997 3679999999999999999999986 3 1 2 33457999
Q ss_pred EEEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeCCCCCchHHHhhhccCCceE
Q 046254 82 GITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLNWDSTSFMVQLGRLVPDRFS 161 (321)
Q Consensus 82 ~~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~~Fs 161 (321)
.+.|++++.+.|.+++|+|+++ ..+++...+.++.|||++...+ .+ ...+||||||++++||+.||.....++||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~-~~~~~~~~~~~~~FGC~~~~~g--~~--~~~~GilGLg~~~~Sl~sQl~~~~~~~FS 146 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFG-SSSGGSNSVPDFIFGCATSNSG--LF--YGADGILGLGRGPLSLPSQLASSSGNKFS 146 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEE-EESSSSEEEEEEEEEEE-GGGT--SS--TTEEEEEE-SSSTTSHHHHHHHH--SEEE
T ss_pred eeecCCCccccCceEEEEEEec-CCCCCCceeeeEEEEeeecccc--CC--cCCCcccccCCCcccHHHHHHHhcCCeEE
Confidence 9999999999999999999999 6655556788999999999987 55 48999999999999999999666669999
Q ss_pred EeecCCCCCCcceEEeCC
Q 046254 162 CCLVQPDKSFHSRLEFGD 179 (321)
Q Consensus 162 ~~l~~~~~~~~g~l~~G~ 179 (321)
|||++......|.|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 999993335899999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.93 E-value=1e-25 Score=173.94 Aligned_cols=108 Identities=27% Similarity=0.488 Sum_probs=94.3
Q ss_pred EEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCc-cCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEECCC
Q 046254 10 LKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIY-NSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYGDV 88 (321)
Q Consensus 10 ~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f-~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~~g 88 (321)
++|.||||||++.|+|||||+++||+|+.|..|..+.++.| +|++|+|++.. .|.|.+.|++|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~----------------~~~~~~~Y~~g 64 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDN----------------GCTFSITYGTG 64 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCC----------------CcEEEEEeCCC
Confidence 47999999999999999999999999999998876666677 99999998864 47999999999
Q ss_pred CceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEee
Q 046254 89 YETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGL 141 (321)
Q Consensus 89 ~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGL 141 (321)
+ +.|.+++|+|+|+ + ..++++.|||+..+.+. .+.....+|||||
T Consensus 65 ~-~~g~~~~D~v~ig-~-----~~~~~~~fg~~~~~~~~-~~~~~~~~GilGL 109 (109)
T cd05470 65 S-LSGGLSTDTVSIG-D-----IEVVGQAFGCATDEPGA-TFLPALFDGILGL 109 (109)
T ss_pred e-EEEEEEEEEEEEC-C-----EEECCEEEEEEEecCCc-cccccccccccCC
Confidence 7 7899999999999 7 78999999999988762 2333578999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.88 E-value=1.6e-22 Score=167.11 Aligned_cols=137 Identities=29% Similarity=0.522 Sum_probs=103.2
Q ss_pred cceEecCCCceeeeecCCcceEEeccCceEeechHHHHHHHHHHHHHhccCCcccccccCCCccceEecCC-----CCCC
Q 046254 184 GKSLNLPPNSFTIKLNGQRGCINDCGSVLTVIECEVYAVLTAEFIDYFSQHDIEKLFTCRKCGVTCFNLPA-----RFNS 258 (321)
Q Consensus 184 ~t~l~i~~~~~~i~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~-----~~~~ 258 (321)
+++++++...|++ ..+.+++||||||++++||+++|++|++++.++++................||+.+. ....
T Consensus 13 ~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~~~~~~~~~~~~ 91 (161)
T PF14541_consen 13 GKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNLSSFGVNRDWAK 91 (161)
T ss_dssp TEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEGGCS-EETTEES
T ss_pred CEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeecccccccccccc
Confidence 3667888888877 667889999999999999999999999999999865431110111137899999887 2578
Q ss_pred CCeEEEEEeCc-EEEeCCCceEEEcCCCeEEEEEecCCCCCCCceeeechheeeeEEEEeCCCC
Q 046254 259 FPSMTYHFQGA-DLVVEPENVFIFNHQDSFFFFFGPAFTPRKGKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 259 ~P~i~~~f~g~-~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
+|+|+|+|.|+ ++++++++|++...++.+|+++..+.....+..|||..+|++++++||++++
T Consensus 92 ~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~ 155 (161)
T PF14541_consen 92 FPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENG 155 (161)
T ss_dssp S--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTT
T ss_pred CCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCC
Confidence 99999999976 9999999999999888999999876223457999999999999999999974
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.18 E-value=6.5e-06 Score=61.14 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=65.4
Q ss_pred ceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEE
Q 046254 6 HTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITY 85 (321)
Q Consensus 6 ~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y 85 (321)
+.|++++.|+ .+++.+++|||++.+|+.......+.. ... ......+..
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~----~~~-------------------------~~~~~~~~~ 49 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL----PLT-------------------------LGGKVTVQT 49 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC----Ccc-------------------------CCCcEEEEe
Confidence 4689999999 599999999999999997542221210 000 012446777
Q ss_pred CCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeC
Q 046254 86 GDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLN 142 (321)
Q Consensus 86 ~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg 142 (321)
++|.........+.++++ + ..++++.+........ ..+||||+.
T Consensus 50 ~~G~~~~~~~~~~~i~ig-~-----~~~~~~~~~v~d~~~~-------~~~gIlG~d 93 (96)
T cd05483 50 ANGRVRAARVRLDSLQIG-G-----ITLRNVPAVVLPGDAL-------GVDGLLGMD 93 (96)
T ss_pred cCCCccceEEEcceEEEC-C-----cEEeccEEEEeCCccc-------CCceEeChH
Confidence 888766677779999999 7 7788888766544321 379999986
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.79 E-value=0.0092 Score=46.54 Aligned_cols=95 Identities=9% Similarity=0.088 Sum_probs=62.6
Q ss_pred cCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 4 LNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 4 ~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
.+|.|++++.|.- +++.+++|||++.+-+....-..-. .++..- .-...+
T Consensus 8 ~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~~----------------------~~~~~~ 57 (121)
T TIGR02281 8 GDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQRLG------LDLNRL----------------------GYTVTV 57 (121)
T ss_pred CCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHHHcC------CCcccC----------------------CceEEE
Confidence 5788999999975 7999999999999988643211110 111110 012234
Q ss_pred EECCCCceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeC
Q 046254 84 TYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLN 142 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg 142 (321)
.-+.|........-|.|.++ + ....|+.+..+.... ..+|+||+.
T Consensus 58 ~ta~G~~~~~~~~l~~l~iG-~-----~~~~nv~~~v~~~~~--------~~~~LLGm~ 102 (121)
T TIGR02281 58 STANGQIKAARVTLDRVAIG-G-----IVVNDVDAMVAEGGA--------LSESLLGMS 102 (121)
T ss_pred EeCCCcEEEEEEEeCEEEEC-C-----EEEeCcEEEEeCCCc--------CCceEcCHH
Confidence 44567645555688999999 7 888899876653321 147999987
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.10 E-value=0.056 Score=39.06 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=54.6
Q ss_pred EEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEEEECCCC
Q 046254 10 LKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGITYGDVY 89 (321)
Q Consensus 10 ~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~~Y~~g~ 89 (321)
+++.|+- +++.+++|||++.+.+...-.+... ..+... .....+.-.+|.
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~~l~------~~~~~~----------------------~~~~~~~~~~g~ 50 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAKKLG------LKPRPK----------------------SVPISVSGAGGS 50 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHHHcC------CCCcCC----------------------ceeEEEEeCCCC
Confidence 4677764 7999999999999888644322111 001000 012244445565
Q ss_pred ceEEEEEEEEEEecCCCCCCCccccceeEeeccccCCcccccccCcceEEeeC
Q 046254 90 ETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLESKDFVSIQKKIIAGIMGLN 142 (321)
Q Consensus 90 ~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~~~~~~~~~~~~~GIlGLg 142 (321)
.......-+.+.++ + ....++.|-.... . ...+||||+-
T Consensus 51 ~~~~~~~~~~i~ig-~-----~~~~~~~~~v~~~--~------~~~~~iLG~d 89 (90)
T PF13650_consen 51 VTVYRGRVDSITIG-G-----ITLKNVPFLVVDL--G------DPIDGILGMD 89 (90)
T ss_pred EEEEEEEEEEEEEC-C-----EEEEeEEEEEECC--C------CCCEEEeCCc
Confidence 45556777789998 6 6777777755541 1 3579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.22 E-value=0.17 Score=39.59 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=29.5
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCC
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKS 41 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~ 41 (321)
.....+++++.|+. +++.+++|||++..++....+..
T Consensus 12 ~~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~~ 48 (124)
T cd05479 12 GKVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAEK 48 (124)
T ss_pred ceeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHHH
Confidence 34567899999985 78999999999999997554433
No 31
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=92.18 E-value=1.3 Score=40.89 Aligned_cols=55 Identities=15% Similarity=0.113 Sum_probs=33.3
Q ss_pred EEECCCCceEEEEEEEEEEecCCCCCCCccccceeEeecccc-------------CCcccccccCcceEEeeCCC
Q 046254 83 ITYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIRFGCSLES-------------KDFVSIQKKIIAGIMGLNWD 144 (321)
Q Consensus 83 ~~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~Fg~~~~~-------------~~~~~~~~~~~~GIlGLg~~ 144 (321)
..|++|. ..|-+.+-.|+|+ +. ...++++..+... ...+........||||+|.-
T Consensus 82 ~~F~sgy-tWGsVr~AdV~ig-ge-----~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASGY-TWGSVRTADVTIG-GE-----TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCcc-cccceEEEEEEEc-Ce-----eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 4688887 7799999999999 64 2223333322111 10002224678999999853
No 32
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.12 E-value=0.28 Score=35.89 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=25.1
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceeEeCCC
Q 046254 8 YMLKLGIGDPVKSLWFLLDTVAGLTWTQCQP 38 (321)
Q Consensus 8 y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~ 38 (321)
|++++.|+- +++.+++||||+..++..+.
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHH
Confidence 578999985 89999999999999997543
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=88.40 E-value=0.96 Score=31.53 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=30.6
Q ss_pred ccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCC
Q 046254 3 TLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCK 40 (321)
Q Consensus 3 ~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~ 40 (321)
...+.+++++.||. +.+.+++|||++...|..+.+.
T Consensus 4 ~~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 4 PDPGLMYVPVSIGG--VQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred ccCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHHH
Confidence 45688999999997 9999999999999988765443
No 34
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.07 E-value=5.3 Score=30.21 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.6
Q ss_pred CceeeechheeeeEEEEeCCC
Q 046254 300 GKTILGARHQHNTQFVYDLDT 320 (321)
Q Consensus 300 ~~~ilG~~fl~~~~vvfD~~~ 320 (321)
+..+||..||+.+-++-|..+
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~ 104 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRN 104 (107)
T ss_pred CccEecHHHHhhCCEEEehhh
Confidence 478999999999999999865
No 35
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=85.89 E-value=1.4 Score=34.38 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.2
Q ss_pred CceeeechheeeeEEEEeCCCC
Q 046254 300 GKTILGARHQHNTQFVYDLDTF 321 (321)
Q Consensus 300 ~~~ilG~~fl~~~~vvfD~~~~ 321 (321)
...|||..||+.+-.+.|.++.
T Consensus 99 ~d~ILG~d~L~~~~~~ID~~~~ 120 (124)
T cd05479 99 VDFLIGLDMLKRHQCVIDLKEN 120 (124)
T ss_pred cCEEecHHHHHhCCeEEECCCC
Confidence 3589999999999999998763
No 36
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.14 E-value=1.7 Score=32.16 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=23.1
Q ss_pred EEEEEecCCCcEEEEEEEcCCCceeEeCCC
Q 046254 9 MLKLGIGDPVKSLWFLLDTVAGLTWTQCQP 38 (321)
Q Consensus 9 ~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~ 38 (321)
+++|.|.. +++.+++||||+.+-|+...
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGG
T ss_pred eEEEeECC--EEEEEEEecCCCcceecccc
Confidence 56788875 79999999999998887543
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=72.05 E-value=3.4 Score=28.68 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=19.1
Q ss_pred ceEEeccCceEeechHHHHHH
Q 046254 203 GCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 203 ~~iiDSGTt~~~lp~~~~~~l 223 (321)
.+++|||.+-.+++.+..+.+
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 489999999999999888876
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=70.89 E-value=16 Score=28.94 Aligned_cols=20 Identities=30% Similarity=0.312 Sum_probs=17.2
Q ss_pred ceeeechheeeeEEEEeCCC
Q 046254 301 KTILGARHQHNTQFVYDLDT 320 (321)
Q Consensus 301 ~~ilG~~fl~~~~vvfD~~~ 320 (321)
-.|||..+|+.+...-|..+
T Consensus 105 DvILGm~WL~~~~~~IDw~~ 124 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWAT 124 (135)
T ss_pred eeEeccchHHhCCCEEEccC
Confidence 48999999999988888764
No 39
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=68.89 E-value=18 Score=30.66 Aligned_cols=78 Identities=15% Similarity=0.092 Sum_probs=54.6
Q ss_pred cCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 4 LNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 4 ~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
.+|-|.++..|= .|++..++|||.+.+.++..+-+. --+|.+.. ..++.+
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l----------------------~y~~~v 151 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSL----------------------DYTITV 151 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCcccc----------------------CCceEE
Confidence 466788888885 399999999999999997654321 12443322 235567
Q ss_pred EECCCCceEEEEEEEEEEecCCCCCCCcccccee
Q 046254 84 TYGDVYETKEVDSLDTSTLLPPDEPSPVSVQNIR 117 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~~~~~~~~~~~~~ 117 (321)
.-+.|....-.+--|.|.|+ + +.++|+.
T Consensus 152 ~TANG~~~AA~V~Ld~v~IG-~-----I~~~nV~ 179 (215)
T COG3577 152 STANGRARAAPVTLDRVQIG-G-----IRVKNVD 179 (215)
T ss_pred EccCCccccceEEeeeEEEc-c-----EEEcCch
Confidence 77788845455788999999 7 7777665
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=68.84 E-value=4.2 Score=28.91 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.6
Q ss_pred CcceEEeccCceEeechHHHHHH
Q 046254 201 QRGCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 201 ~~~~iiDSGTt~~~lp~~~~~~l 223 (321)
...++||||++.+.++++.++++
T Consensus 9 ~~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 9 PVRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEEEcCCCCcEEECHHHHHHc
Confidence 34689999999999999888765
No 41
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=66.27 E-value=12 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.1
Q ss_pred CcceEEeccCceEeechHHHHHHH
Q 046254 201 QRGCINDCGSVLTVIECEVYAVLT 224 (321)
Q Consensus 201 ~~~~iiDSGTt~~~lp~~~~~~l~ 224 (321)
...+++|||+...++.+++.++|.
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhC
Confidence 456999999999999998887763
No 42
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.56 E-value=9.4 Score=31.21 Aligned_cols=29 Identities=7% Similarity=0.083 Sum_probs=23.4
Q ss_pred EEEEEecCCCcEEEEEEEcCCCceeEeCC
Q 046254 9 MLKLGIGDPVKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 9 ~~~v~iGtP~q~~~~~~DTGS~~~wv~~~ 37 (321)
...+.++.-..++.++|||||+.-.+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34566777778999999999999988753
No 43
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=63.55 E-value=5.8 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=19.4
Q ss_pred CcceEEeccCceEeechHHHHHH
Q 046254 201 QRGCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 201 ~~~~iiDSGTt~~~lp~~~~~~l 223 (321)
...++||||.+.+.++++..+++
T Consensus 22 ~~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 22 NVRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred EEEEEEECCCCcEEcCHHHHHHc
Confidence 34689999999999999877664
No 44
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=62.72 E-value=9.9 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.104 Sum_probs=20.6
Q ss_pred EEEecCCCcEEEEEEEcCCCceeEeCC
Q 046254 11 KLGIGDPVKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 11 ~v~iGtP~q~~~~~~DTGS~~~wv~~~ 37 (321)
.+.|+ .|.+.+++|||+.++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 59999999999999999743
No 45
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=62.29 E-value=7.6 Score=28.12 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.4
Q ss_pred cceEEeccCceEeechHHHHHH
Q 046254 202 RGCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 202 ~~~iiDSGTt~~~lp~~~~~~l 223 (321)
-.+.||||++.+.++.+.+.++
T Consensus 12 i~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 12 LKFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEEEcCCcceEEeCHHHHHHh
Confidence 3589999999999999988865
No 46
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=61.62 E-value=6.8 Score=30.34 Aligned_cols=20 Identities=25% Similarity=0.193 Sum_probs=18.3
Q ss_pred eEEeccCc-eEeechHHHHHH
Q 046254 204 CINDCGSV-LTVIECEVYAVL 223 (321)
Q Consensus 204 ~iiDSGTt-~~~lp~~~~~~l 223 (321)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999999986
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=61.34 E-value=11 Score=27.00 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=20.2
Q ss_pred EEEecCCCcEEEEEEEcCCCceeEeCCC
Q 046254 11 KLGIGDPVKSLWFLLDTVAGLTWTQCQP 38 (321)
Q Consensus 11 ~v~iGtP~q~~~~~~DTGS~~~wv~~~~ 38 (321)
.+.|. .+++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 34554 379999999999999997543
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=60.46 E-value=16 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=25.3
Q ss_pred cccCceEEEEEEecCCCcEEEEEEEcCCCceeEeCCCCCCCC
Q 046254 2 FTLNHTYMLKLGIGDPVKSLWFLLDTVAGLTWTQCQPCKSCY 43 (321)
Q Consensus 2 ~~~~~~y~~~v~iGtP~q~~~~~~DTGS~~~wv~~~~C~~C~ 43 (321)
|....+.|++++|.. +++.+.+|||+..+-+..+-+..|.
T Consensus 19 f~~v~mLyI~~~ing--~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 19 FGQVSMLYINCKING--VPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp -------EEEEEETT--EEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred hcCcceEEEEEEECC--EEEEEEEeCCCCccccCHHHHHHcC
Confidence 445678999999986 8999999999999888655344554
No 49
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=57.81 E-value=8.9 Score=27.48 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=19.1
Q ss_pred CcceEEeccCceEeechHHHHHH
Q 046254 201 QRGCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 201 ~~~~iiDSGTt~~~lp~~~~~~l 223 (321)
...++||||++.+.++.+..+++
T Consensus 13 ~~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 13 PVRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEEEECCCCcEEcCHHHHHHc
Confidence 34689999999999999877654
No 50
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=52.36 E-value=12 Score=27.48 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=20.2
Q ss_pred CcceEEeccCceEeechHHHHHHH
Q 046254 201 QRGCINDCGSVLTVIECEVYAVLT 224 (321)
Q Consensus 201 ~~~~iiDSGTt~~~lp~~~~~~l~ 224 (321)
.-.+.+|||++...||.+.|..+-
T Consensus 10 ~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 10 SVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEEEEEecCCEEEeccHHHHhhhc
Confidence 346899999999999998888753
No 51
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=44.64 E-value=19 Score=25.73 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.1
Q ss_pred cceEEeccCceEeechHHHHHH
Q 046254 202 RGCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 202 ~~~iiDSGTt~~~lp~~~~~~l 223 (321)
-.+++|||.+.+.++++..+.+
T Consensus 10 ~~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 10 IVFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEEECCCCeEEECHHHhhhc
Confidence 3589999999999999888765
No 52
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=41.39 E-value=36 Score=25.60 Aligned_cols=65 Identities=11% Similarity=-0.069 Sum_probs=40.2
Q ss_pred EEEEEecCCC----cEEEEEEEcCCCcee-EeCCCCCCCCCCCCCCccCCCCCccceeeCCCCCCCCCCCCCCCCceEEE
Q 046254 9 MLKLGIGDPV----KSLWFLLDTVAGLTW-TQCQPCKSCYEQNDPIYNSRSFKSYKKLPCYDASCKSPFHCFEGDCFYGI 83 (321)
Q Consensus 9 ~~~v~iGtP~----q~~~~~~DTGS~~~w-v~~~~C~~C~~~~~~~f~~~~SsT~~~~~c~~~~C~~~~~c~~~~~~~~~ 83 (321)
++++.|..|. -++.+++|||.+..- ++...-+. - ..++.. ...+
T Consensus 1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~~-----l-gl~~~~-------------------------~~~~ 49 (107)
T TIGR03698 1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVNK-----L-GLPELD-------------------------QRRV 49 (107)
T ss_pred CEEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHHH-----c-CCCccc-------------------------CcEE
Confidence 3678888883 378899999999764 54321110 0 011111 1245
Q ss_pred EECCCCceEEEEEEEEEEecCC
Q 046254 84 TYGDVYETKEVDSLDTSTLLPP 105 (321)
Q Consensus 84 ~Y~~g~~~~G~l~~D~v~~~~~ 105 (321)
.-++|....-....+++.++ +
T Consensus 50 ~tA~G~~~~~~v~~~~v~ig-g 70 (107)
T TIGR03698 50 YLADGREVLTDVAKASIIIN-G 70 (107)
T ss_pred EecCCcEEEEEEEEEEEEEC-C
Confidence 66677656667888899998 6
No 53
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=40.75 E-value=35 Score=28.97 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=14.3
Q ss_pred cceEEeccCceEeechHHH
Q 046254 202 RGCINDCGSVLTVIECEVY 220 (321)
Q Consensus 202 ~~~iiDSGTt~~~lp~~~~ 220 (321)
..++||||.++-.....+.
T Consensus 21 ~~~~vDTGAt~C~~~~~ii 39 (201)
T PF02160_consen 21 YHCYVDTGATICCASKKII 39 (201)
T ss_pred EEEEEeCCCceEEecCCcC
Confidence 4589999999888755443
No 54
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=39.53 E-value=41 Score=29.80 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=23.3
Q ss_pred ceEEEE---EEecC---CCcEEEEEEEcCCCceeEeCC
Q 046254 6 HTYMLK---LGIGD---PVKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~---v~iGt---P~q~~~~~~DTGS~~~wv~~~ 37 (321)
..|.++ |+||. +.....+++|||++++.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 466666 47763 234567999999999999854
No 55
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=32.42 E-value=53 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=22.5
Q ss_pred ceEEEE---EEecCC-----CcEEEEEEEcCCCceeEeCC
Q 046254 6 HTYMLK---LGIGDP-----VKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~---v~iGtP-----~q~~~~~~DTGS~~~wv~~~ 37 (321)
+.|.++ |.||.. .+...+++|||++++++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 445555 567642 23467999999999999853
No 56
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=30.42 E-value=50 Score=28.84 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=25.4
Q ss_pred CceEEEE---EEecC-----CCcEEEEEEEcCCCceeEeCCCC
Q 046254 5 NHTYMLK---LGIGD-----PVKSLWFLLDTVAGLTWTQCQPC 39 (321)
Q Consensus 5 ~~~y~~~---v~iGt-----P~q~~~~~~DTGS~~~wv~~~~C 39 (321)
...|.+. |.+|. ......++||||++.++++..-+
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 3456655 45664 34778999999999999986543
No 57
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=29.56 E-value=50 Score=30.09 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=22.7
Q ss_pred ceEEEE---EEecCC------CcEEEEEEEcCCCceeEeCC
Q 046254 6 HTYMLK---LGIGDP------VKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~---v~iGtP------~q~~~~~~DTGS~~~wv~~~ 37 (321)
..|.+. |.||.. .....+++|||+++++++..
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 456555 467753 24566899999999999843
No 58
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=27.34 E-value=51 Score=29.49 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=22.5
Q ss_pred ceEEEE---EEecCCC--------cEEEEEEEcCCCceeEeCC
Q 046254 6 HTYMLK---LGIGDPV--------KSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~---v~iGtP~--------q~~~~~~DTGS~~~wv~~~ 37 (321)
..|.++ |+||.-. ....+++|||+++++++..
T Consensus 146 ~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 146 TFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 467766 4776421 2346899999999999853
No 59
>PF15409 PH_8: Pleckstrin homology domain
Probab=25.39 E-value=2e+02 Score=20.94 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=23.1
Q ss_pred CCcceEEeccCceEee---chHHHHHHHHHHHH
Q 046254 200 GQRGCINDCGSVLTVI---ECEVYAVLTAEFID 229 (321)
Q Consensus 200 ~~~~~iiDSGTt~~~l---p~~~~~~l~~~~~~ 229 (321)
....+.||||.....| ....++..++++..
T Consensus 55 ~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 55 KSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred CCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 3567899999998877 56678888877754
No 60
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=25.21 E-value=62 Score=29.29 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=22.6
Q ss_pred CceEEEE---EEecCCC----cEEEEEEEcCCCceeEeCC
Q 046254 5 NHTYMLK---LGIGDPV----KSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 5 ~~~y~~~---v~iGtP~----q~~~~~~DTGS~~~wv~~~ 37 (321)
.+.|.++ |.||.-. ....+++|||+++++++..
T Consensus 176 ~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 176 QGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPSG 215 (316)
T ss_pred ceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCHH
Confidence 3456655 5676421 2357999999999999854
No 61
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=22.82 E-value=68 Score=23.41 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=18.2
Q ss_pred cCCcceEEeccCceEeechHHHH
Q 046254 199 NGQRGCINDCGSVLTVIECEVYA 221 (321)
Q Consensus 199 ~~~~~~iiDSGTt~~~lp~~~~~ 221 (321)
..+-..+||||.....+|....+
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCCcEEEEeCCCceEeecccccc
Confidence 34567899999999999975544
No 62
>PLN03146 aspartyl protease family protein; Provisional
Probab=22.43 E-value=72 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=22.2
Q ss_pred ceEEEE---EEecC-----CCcE------EEEEEEcCCCceeEeCC
Q 046254 6 HTYMLK---LGIGD-----PVKS------LWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~---v~iGt-----P~q~------~~~~~DTGS~~~wv~~~ 37 (321)
..|++. |.||. |+-. -.++||||+.+++++..
T Consensus 279 ~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 279 TFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred CeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 467766 47775 2211 26899999999999853
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=21.88 E-value=64 Score=28.52 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=22.9
Q ss_pred ceEEEE---EEecC----CCcEEEEEEEcCCCceeEeCC
Q 046254 6 HTYMLK---LGIGD----PVKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~---v~iGt----P~q~~~~~~DTGS~~~wv~~~ 37 (321)
..|.++ |.||. ......+++|||++++++|..
T Consensus 177 ~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 177 GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 445555 45653 245678999999999999864
No 64
>PTZ00147 plasmepsin-1; Provisional
Probab=21.66 E-value=76 Score=30.66 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=21.9
Q ss_pred ceEEEEEE--ecC-CCcEEEEEEEcCCCceeEeCC
Q 046254 6 HTYMLKLG--IGD-PVKSLWFLLDTVAGLTWTQCQ 37 (321)
Q Consensus 6 ~~y~~~v~--iGt-P~q~~~~~~DTGS~~~wv~~~ 37 (321)
..|.+++. +|. ......+++|||++++++|..
T Consensus 315 ~~W~V~l~~~vg~~~~~~~~aIiDSGTsli~lP~~ 349 (453)
T PTZ00147 315 LYWQVDLDVHFGNVSSEKANVIVDSGTSVITVPTE 349 (453)
T ss_pred ceEEEEEEEEECCEecCceeEEECCCCchhcCCHH
Confidence 45555554 343 124568999999999999854
No 65
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=20.12 E-value=73 Score=21.06 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.1
Q ss_pred cceEEeccCceEeechHHHHHH
Q 046254 202 RGCINDCGSVLTVIECEVYAVL 223 (321)
Q Consensus 202 ~~~iiDSGTt~~~lp~~~~~~l 223 (321)
..+++|+|.+...+..+.++..
T Consensus 10 ~~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 10 VRALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEEcCCCcccccCHHHHHHc
Confidence 3689999999999998877653
Done!