BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046257
(838 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 394 AVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAM 450
A+ +Q + N E +++G NAY K+G DEA + ++ +D + AW +
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLG----NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 451 LAGYAQIGDTEGAVKIYRQ 469
Y + GD + A++ Y++
Sbjct: 84 GNAYYKQGDYDEAIEYYQK 102
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 419 LLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQ 469
L NAY K+G DEA + ++ +D + AW + Y + GD + A++ Y++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 419 LLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQ 469
L NAY K+G DEA + ++ +D + AW + Y + GD + A++ Y++
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 419 LLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQ 469
L NAY K+G DEA + ++ +D + AW + Y + GD + A++ Y++
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 419 LLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQ 469
L NAY K+G DEA + ++ +D + AW + Y + GD + A++ Y++
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 419 LLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQ 469
L NAY K+G DEA + ++ +D + AW + Y + GD + A++ Y++
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 394 AVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAM 450
A+ +Q + N E +++G NAY K+G DEA + ++ E + AW +
Sbjct: 28 AIEYYQKALELYPNNAEAWYNLG----NAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 83
Query: 451 LAGYAQIGDTEGAVKIYRQ 469
Y + GD + A++ Y++
Sbjct: 84 GNAYYKQGDYDEAIEYYQK 102
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 419 LLNAYVKKGILDEAAKVFEL---IDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQ 469
L NAY K+G DEA + ++ +D + AW + Y + GD + A++ Y++
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
>pdb|3CTP|A Chain A, Crystal Structure Of Periplasmic Binding ProteinLACI
TRANSCRIPTIONAL Regulator From Alkaliphilus
Metalliredigens Qymf Complexed With D- Xylulofuranose
pdb|3CTP|B Chain B, Crystal Structure Of Periplasmic Binding ProteinLACI
TRANSCRIPTIONAL Regulator From Alkaliphilus
Metalliredigens Qymf Complexed With D- Xylulofuranose
Length = 330
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 14/107 (13%)
Query: 682 TGHWQERAR--VRKLMNDRKVKKEAGYSWIEVKN-KTYSFLAGDISHPQSNQIYSKLEEL 738
TG+ E AR ++K++++ A + KN KT + +IS+P NQ+ S +EE
Sbjct: 26 TGYVSEDAREKIQKVVDELNYTPNALARAMFTKNSKTIGLMVPNISNPFFNQMASVIEEY 85
Query: 739 STRLKDAGYKPDTSYVLQDIDDEHKEAILSQ--HSERLAIAFGLVAT 783
+ K+ GY T ++ DD+ KE + S R+A G++A+
Sbjct: 86 A---KNKGY---TLFLCNTDDDKEKEKTYLEVLQSHRVA---GIIAS 123
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 466 IYRQLTSEGVKPNEFTFSSVINACTA---PSAAVEQGKQFHACSIKAKLNNALCVSSALV 522
I++Q+ + V PNE TF++ A P A + KQ A I+ +L + AL
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS---YGPALF 148
Query: 523 TMYSKKGNIESASEV 537
+ +KG+ + A EV
Sbjct: 149 G-FCRKGDADKAYEV 162
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 726 PQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKE--AILSQHSERL-----AIAF 778
P SN+ S ++ L TRLKD G K T+ ++ I+ E+ + A++ Q E L IA
Sbjct: 128 PVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAV 187
Query: 779 GLVATP 784
G + P
Sbjct: 188 GGKSVP 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,981,030
Number of Sequences: 62578
Number of extensions: 958411
Number of successful extensions: 2421
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2412
Number of HSP's gapped (non-prelim): 22
length of query: 838
length of database: 14,973,337
effective HSP length: 107
effective length of query: 731
effective length of database: 8,277,491
effective search space: 6050845921
effective search space used: 6050845921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)