Query 046257
Match_columns 838
No_of_seqs 774 out of 5007
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:14:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-154 3E-159 1384.1 91.5 794 38-836 46-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-124 5E-129 1097.0 67.6 595 242-838 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.4E-86 9.6E-91 792.5 67.6 585 28-619 137-728 (857)
4 PLN03081 pentatricopeptide (PP 100.0 4.9E-69 1.1E-73 630.0 57.8 476 39-616 83-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.8E-67 4E-72 617.4 60.7 530 74-650 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 5.3E-64 1.1E-68 588.2 58.7 546 110-757 367-964 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-32 8E-37 333.6 67.6 655 27-696 208-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-31 6.5E-36 325.5 69.5 656 29-699 107-800 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 5.4E-36 1.2E-40 257.6 8.1 106 705-828 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.4E-22 3.1E-27 249.5 59.0 623 24-701 40-744 (1157)
11 PRK11447 cellulose synthase su 99.9 2.9E-20 6.2E-25 229.2 64.1 583 49-699 34-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.5E-19 3.3E-24 212.4 56.1 599 45-697 44-705 (987)
13 PRK09782 bacteriophage N4 rece 99.9 4.8E-18 1E-22 199.8 59.4 610 30-700 62-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 4.1E-17 8.8E-22 169.7 34.4 444 148-688 52-509 (966)
15 PRK11788 tetratricopeptide rep 99.8 2.8E-18 6E-23 188.7 27.1 301 323-707 43-356 (389)
16 PRK11788 tetratricopeptide rep 99.8 3.6E-17 7.7E-22 179.8 29.7 296 255-618 45-354 (389)
17 KOG2002 TPR-containing nuclear 99.8 1.4E-14 3.1E-19 159.3 46.8 621 30-699 112-799 (1018)
18 KOG2002 TPR-containing nuclear 99.8 2.5E-14 5.4E-19 157.4 47.0 627 41-697 39-744 (1018)
19 TIGR00990 3a0801s09 mitochondr 99.8 6.2E-15 1.3E-19 170.9 40.6 245 426-697 307-570 (615)
20 KOG4626 O-linked N-acetylgluco 99.7 9.1E-15 2E-19 152.4 31.5 353 315-697 116-484 (966)
21 PRK10049 pgaA outer membrane p 99.7 5.8E-14 1.3E-18 165.8 43.0 406 213-698 14-456 (765)
22 PRK10049 pgaA outer membrane p 99.7 9.3E-14 2E-18 164.1 41.3 397 189-672 25-464 (765)
23 PRK15174 Vi polysaccharide exp 99.7 8E-14 1.7E-18 161.1 38.6 341 226-643 17-378 (656)
24 PRK15174 Vi polysaccharide exp 99.7 3.8E-14 8.2E-19 163.7 35.3 325 282-699 44-382 (656)
25 TIGR00990 3a0801s09 mitochondr 99.7 2.1E-13 4.6E-18 158.2 41.2 417 117-574 131-570 (615)
26 KOG4422 Uncharacterized conser 99.7 1.7E-12 3.7E-17 130.2 40.0 441 44-576 117-591 (625)
27 KOG4318 Bicoid mRNA stability 99.7 3.4E-13 7.4E-18 146.6 37.9 257 64-332 11-288 (1088)
28 PRK14574 hmsH outer membrane p 99.7 1.1E-12 2.3E-17 151.9 43.4 190 488-698 301-513 (822)
29 PRK14574 hmsH outer membrane p 99.6 1.3E-11 2.8E-16 143.1 45.2 430 122-643 43-510 (822)
30 KOG4422 Uncharacterized conser 99.6 5.3E-12 1.1E-16 126.7 35.1 439 144-643 116-587 (625)
31 KOG0495 HAT repeat protein [RN 99.6 6.6E-10 1.4E-14 117.6 49.9 595 58-711 266-891 (913)
32 KOG4318 Bicoid mRNA stability 99.5 6.7E-11 1.4E-15 129.2 33.2 123 414-541 492-622 (1088)
33 KOG0495 HAT repeat protein [RN 99.5 1.6E-08 3.5E-13 107.3 48.1 473 90-643 388-877 (913)
34 KOG2003 TPR repeat-containing 99.5 4.5E-11 9.7E-16 120.6 28.0 124 83-208 206-338 (840)
35 KOG2076 RNA polymerase III tra 99.5 6.2E-09 1.3E-13 115.0 46.7 603 53-698 149-849 (895)
36 KOG2076 RNA polymerase III tra 99.5 7.7E-09 1.7E-13 114.2 47.1 505 90-642 151-730 (895)
37 PF13429 TPR_15: Tetratricopep 99.4 1.1E-12 2.3E-17 136.6 11.5 252 418-696 13-275 (280)
38 KOG0547 Translocase of outer m 99.3 2.8E-09 6.1E-14 109.5 29.8 213 457-696 339-564 (606)
39 KOG2003 TPR repeat-containing 99.3 7.5E-09 1.6E-13 104.9 31.1 249 421-697 427-688 (840)
40 KOG1915 Cell cycle control pro 99.3 3.6E-07 7.9E-12 93.8 41.5 114 457-574 417-535 (677)
41 TIGR00540 hemY_coli hemY prote 99.3 4.4E-09 9.5E-14 115.4 30.1 254 420-695 125-396 (409)
42 PRK10747 putative protoheme IX 99.2 6E-09 1.3E-13 113.6 29.7 281 258-607 97-387 (398)
43 PRK10747 putative protoheme IX 99.2 3.1E-09 6.8E-14 115.9 27.2 246 124-375 129-389 (398)
44 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.1E-16 89.1 6.7 50 544-593 1-50 (50)
45 KOG1126 DNA-binding cell divis 99.2 6.7E-10 1.4E-14 118.8 20.8 264 428-745 334-607 (638)
46 KOG1155 Anaphase-promoting com 99.2 6.3E-08 1.4E-12 99.2 32.3 354 209-643 159-533 (559)
47 COG2956 Predicted N-acetylgluc 99.2 1.1E-08 2.3E-13 100.1 25.5 306 359-720 47-369 (389)
48 PF13429 TPR_15: Tetratricopep 99.2 5.6E-11 1.2E-15 123.7 11.0 255 48-306 13-274 (280)
49 KOG2047 mRNA splicing factor [ 99.2 6.4E-06 1.4E-10 88.0 47.7 513 42-608 26-613 (835)
50 TIGR00540 hemY_coli hemY prote 99.2 4.5E-09 9.7E-14 115.3 25.9 280 90-375 96-398 (409)
51 KOG1915 Cell cycle control pro 99.2 3.1E-07 6.7E-12 94.3 36.4 209 443-656 321-547 (677)
52 PF13041 PPR_2: PPR repeat fam 99.2 3.1E-11 6.8E-16 88.0 5.8 50 142-191 1-50 (50)
53 KOG1126 DNA-binding cell divis 99.2 4.3E-09 9.4E-14 112.7 22.6 281 261-619 335-626 (638)
54 KOG2047 mRNA splicing factor [ 99.2 3.4E-06 7.3E-11 90.1 43.3 516 45-640 104-717 (835)
55 COG3071 HemY Uncharacterized e 99.1 8E-08 1.7E-12 97.2 29.0 291 258-579 97-394 (400)
56 KOG1155 Anaphase-promoting com 99.1 2.3E-07 4.9E-12 95.2 31.9 215 455-697 273-494 (559)
57 KOG1173 Anaphase-promoting com 99.1 2.2E-07 4.8E-12 97.8 30.9 256 312-607 241-515 (611)
58 KOG0985 Vesicle coat protein c 99.0 1.9E-05 4.1E-10 88.3 44.5 564 116-748 609-1295(1666)
59 KOG3785 Uncharacterized conser 99.0 2.1E-07 4.6E-12 91.9 26.5 356 287-660 128-505 (557)
60 COG2956 Predicted N-acetylgluc 99.0 1.8E-07 4E-12 91.7 25.4 218 55-274 47-278 (389)
61 TIGR02521 type_IV_pilW type IV 99.0 4.4E-08 9.5E-13 98.8 22.3 195 445-697 32-231 (234)
62 TIGR02521 type_IV_pilW type IV 99.0 2.1E-08 4.4E-13 101.2 19.2 166 514-698 30-198 (234)
63 KOG3616 Selective LIM binding 99.0 3.3E-06 7.2E-11 90.9 35.4 227 118-373 620-850 (1636)
64 KOG0547 Translocase of outer m 99.0 6.9E-07 1.5E-11 92.3 28.1 114 524-643 437-563 (606)
65 COG3071 HemY Uncharacterized e 99.0 6E-07 1.3E-11 91.0 27.2 292 55-380 96-394 (400)
66 KOG4162 Predicted calmodulin-b 98.9 4.5E-05 9.7E-10 83.8 40.9 489 55-643 239-780 (799)
67 KOG1173 Anaphase-promoting com 98.9 4.3E-06 9.4E-11 88.3 31.6 262 411-697 242-517 (611)
68 KOG3616 Selective LIM binding 98.9 7.8E-06 1.7E-10 88.1 33.9 464 125-694 456-933 (1636)
69 KOG4162 Predicted calmodulin-b 98.9 6.7E-06 1.4E-10 90.1 34.0 427 209-697 318-782 (799)
70 KOG3785 Uncharacterized conser 98.9 9.5E-06 2.1E-10 80.5 31.0 94 521-620 399-497 (557)
71 PRK11189 lipoprotein NlpI; Pro 98.9 2.2E-07 4.7E-12 97.0 21.4 178 515-699 64-266 (296)
72 KOG2376 Signal recognition par 98.9 1E-05 2.2E-10 85.9 32.1 416 253-691 20-513 (652)
73 KOG0985 Vesicle coat protein c 98.8 8E-05 1.7E-09 83.5 40.0 411 189-643 848-1305(1666)
74 KOG1840 Kinesin light chain [C 98.8 3.3E-07 7.1E-12 99.7 21.7 243 414-696 200-477 (508)
75 PRK12370 invasion protein regu 98.8 2.4E-07 5.2E-12 105.8 21.8 179 494-697 318-501 (553)
76 KOG3617 WD40 and TPR repeat-co 98.8 9.1E-05 2E-09 81.4 39.2 421 37-541 720-1171(1416)
77 COG3063 PilF Tfp pilus assembl 98.8 2.8E-07 6.1E-12 86.5 17.6 161 520-700 40-204 (250)
78 KOG3617 WD40 and TPR repeat-co 98.8 0.0001 2.3E-09 80.9 38.5 370 42-462 756-1189(1416)
79 KOG1174 Anaphase-promoting com 98.8 4.4E-05 9.5E-10 77.7 32.9 280 412-743 231-519 (564)
80 PRK12370 invasion protein regu 98.8 2.1E-06 4.6E-11 98.1 26.0 226 143-375 255-501 (553)
81 KOG1156 N-terminal acetyltrans 98.7 0.00021 4.5E-09 77.2 38.1 446 192-695 20-508 (700)
82 KOG2376 Signal recognition par 98.7 0.00015 3.2E-09 77.4 35.3 209 153-377 21-254 (652)
83 KOG1129 TPR repeat-containing 98.7 5.5E-07 1.2E-11 88.2 15.0 225 417-698 227-458 (478)
84 PF04733 Coatomer_E: Coatomer 98.6 2.1E-06 4.6E-11 88.2 18.1 151 522-697 109-264 (290)
85 KOG1840 Kinesin light chain [C 98.6 5E-06 1.1E-10 90.6 21.7 197 179-375 199-437 (508)
86 KOG1156 N-terminal acetyltrans 98.6 0.00036 7.9E-09 75.4 34.8 130 512-643 366-508 (700)
87 KOG1174 Anaphase-promoting com 98.5 0.00088 1.9E-08 68.5 33.0 286 258-581 209-504 (564)
88 PF12569 NARP1: NMDA receptor- 98.5 8.6E-05 1.9E-09 82.1 28.1 289 356-696 13-332 (517)
89 KOG1129 TPR repeat-containing 98.5 2.7E-06 5.8E-11 83.5 13.8 224 148-375 227-457 (478)
90 KOG1914 mRNA cleavage and poly 98.5 0.0026 5.5E-08 67.6 36.0 181 460-643 347-536 (656)
91 PF12854 PPR_1: PPR repeat 98.4 2.8E-07 6.2E-12 60.1 4.0 32 612-643 2-33 (34)
92 TIGR03302 OM_YfiO outer membra 98.4 1.4E-05 3E-10 80.8 18.1 162 514-698 32-232 (235)
93 PRK11189 lipoprotein NlpI; Pro 98.4 3.5E-05 7.5E-10 80.5 21.1 190 182-376 67-265 (296)
94 KOG0548 Molecular co-chaperone 98.4 0.0011 2.5E-08 70.3 31.2 221 418-697 229-454 (539)
95 KOG0548 Molecular co-chaperone 98.4 0.00077 1.7E-08 71.5 29.8 107 553-682 365-473 (539)
96 KOG1127 TPR repeat-containing 98.4 0.00053 1.1E-08 77.5 29.7 160 526-695 827-993 (1238)
97 PRK15359 type III secretion sy 98.4 9.2E-06 2E-10 74.5 13.8 123 536-681 14-138 (144)
98 PRK04841 transcriptional regul 98.4 0.014 3.1E-07 71.9 46.3 407 161-609 292-759 (903)
99 PF04733 Coatomer_E: Coatomer 98.3 1E-05 2.2E-10 83.2 15.2 151 421-610 110-265 (290)
100 PF12854 PPR_1: PPR repeat 98.3 6E-07 1.3E-11 58.6 3.9 32 576-607 2-33 (34)
101 KOG4340 Uncharacterized conser 98.3 0.00033 7.2E-09 68.3 23.4 309 116-441 13-338 (459)
102 PF12569 NARP1: NMDA receptor- 98.3 0.00022 4.8E-09 79.0 25.6 290 122-439 13-331 (517)
103 PRK10370 formate-dependent nit 98.3 2.3E-05 5E-10 76.1 15.4 146 522-698 23-173 (198)
104 KOG1127 TPR repeat-containing 98.3 0.013 2.8E-07 66.8 38.0 521 114-643 493-1101(1238)
105 KOG0624 dsRNA-activated protei 98.3 0.0014 3.1E-08 65.4 27.3 302 321-697 44-369 (504)
106 COG3063 PilF Tfp pilus assembl 98.3 0.00014 3.1E-09 68.8 18.9 180 419-639 41-229 (250)
107 cd05804 StaR_like StaR_like; a 98.2 0.00081 1.8E-08 72.8 28.1 193 45-240 8-212 (355)
108 PRK15359 type III secretion sy 98.2 3.4E-05 7.5E-10 70.7 13.5 108 566-698 13-121 (144)
109 cd05804 StaR_like StaR_like; a 98.2 0.0027 5.8E-08 68.7 30.3 291 82-376 10-336 (355)
110 PRK15179 Vi polysaccharide bio 98.1 0.00012 2.7E-09 84.1 19.7 129 545-696 85-215 (694)
111 TIGR00756 PPR pentatricopeptid 98.1 3.4E-06 7.3E-11 56.0 4.3 35 547-581 1-35 (35)
112 KOG1128 Uncharacterized conser 98.1 0.00016 3.4E-09 79.2 18.6 216 409-643 394-613 (777)
113 KOG1070 rRNA processing protei 98.1 0.00036 7.7E-09 81.5 21.5 225 75-300 1455-1691(1710)
114 KOG4340 Uncharacterized conser 98.1 0.00078 1.7E-08 65.8 20.6 307 248-605 13-334 (459)
115 PRK04841 transcriptional regul 98.1 0.012 2.6E-07 72.5 37.0 366 119-542 347-758 (903)
116 KOG1128 Uncharacterized conser 98.0 0.00016 3.5E-09 79.1 16.5 237 311-627 394-633 (777)
117 COG4783 Putative Zn-dependent 98.0 0.00021 4.6E-09 75.0 16.5 136 525-699 316-455 (484)
118 KOG1125 TPR repeat-containing 98.0 0.00035 7.6E-09 74.7 18.3 104 503-608 418-525 (579)
119 KOG1070 rRNA processing protei 98.0 0.001 2.2E-08 77.9 22.9 220 347-596 1458-1686(1710)
120 TIGR00756 PPR pentatricopeptid 98.0 9.2E-06 2E-10 53.8 4.2 35 145-179 1-35 (35)
121 COG4783 Putative Zn-dependent 98.0 0.001 2.2E-08 70.0 20.8 130 545-697 305-436 (484)
122 KOG2053 Mitochondrial inherita 98.0 0.06 1.3E-06 61.1 38.5 227 90-342 21-253 (932)
123 PLN02789 farnesyltranstransfer 97.9 0.0024 5.3E-08 66.7 23.0 219 452-695 45-299 (320)
124 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.4E-10 52.3 4.4 33 547-579 2-34 (34)
125 KOG3081 Vesicle coat complex C 97.9 0.0041 8.9E-08 60.3 21.7 170 502-696 95-269 (299)
126 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00026 5.7E-09 75.3 15.1 127 517-648 171-299 (395)
127 TIGR02552 LcrH_SycD type III s 97.9 0.00025 5.5E-09 64.4 13.1 110 567-698 4-114 (135)
128 PF13812 PPR_3: Pentatricopept 97.8 2.5E-05 5.4E-10 51.3 4.1 34 144-177 1-34 (34)
129 PRK10370 formate-dependent nit 97.8 0.00041 8.9E-09 67.3 14.0 111 528-643 52-170 (198)
130 TIGR03302 OM_YfiO outer membra 97.8 0.00053 1.1E-08 69.2 15.0 57 587-643 172-229 (235)
131 KOG1914 mRNA cleavage and poly 97.8 0.087 1.9E-06 56.4 33.5 140 500-643 351-498 (656)
132 COG5010 TadD Flp pilus assembl 97.8 0.0036 7.7E-08 60.8 18.9 123 515-641 100-226 (257)
133 PF01535 PPR: PPR repeat; Int 97.7 3E-05 6.6E-10 49.6 3.2 31 547-577 1-31 (31)
134 PRK14720 transcript cleavage f 97.7 0.0015 3.3E-08 76.0 19.0 233 412-687 30-273 (906)
135 COG5010 TadD Flp pilus assembl 97.7 0.0014 3E-08 63.6 15.5 120 521-644 72-195 (257)
136 KOG0624 dsRNA-activated protei 97.7 0.061 1.3E-06 54.1 26.1 214 144-383 38-257 (504)
137 PLN02789 farnesyltranstransfer 97.6 0.01 2.2E-07 62.1 21.1 193 45-241 39-248 (320)
138 PF01535 PPR: PPR repeat; Int 97.6 8.8E-05 1.9E-09 47.4 3.3 31 145-175 1-31 (31)
139 KOG2053 Mitochondrial inherita 97.5 0.28 6E-06 56.0 42.3 69 417-485 440-514 (932)
140 PRK15363 pathogenicity island 97.5 0.0012 2.6E-08 59.6 11.3 115 586-744 40-155 (157)
141 PF09976 TPR_21: Tetratricopep 97.5 0.0024 5.1E-08 58.8 13.8 123 549-694 15-143 (145)
142 PRK14720 transcript cleavage f 97.5 0.019 4.1E-07 67.2 23.1 151 178-358 115-268 (906)
143 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0018 4E-08 57.1 11.9 94 548-643 4-102 (119)
144 TIGR02552 LcrH_SycD type III s 97.4 0.0027 5.9E-08 57.6 12.6 94 546-643 17-111 (135)
145 PF09976 TPR_21: Tetratricopep 97.4 0.0037 8E-08 57.5 13.5 122 518-643 15-144 (145)
146 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0033 7.2E-08 67.1 14.0 120 120-241 176-295 (395)
147 KOG3060 Uncharacterized conser 97.3 0.039 8.5E-07 53.4 19.1 180 458-643 26-217 (289)
148 KOG2041 WD40 repeat protein [G 97.3 0.41 8.8E-06 52.9 28.6 127 227-372 747-877 (1189)
149 PLN03088 SGT1, suppressor of 97.3 0.003 6.4E-08 67.7 13.1 103 553-678 9-113 (356)
150 KOG3081 Vesicle coat complex C 97.3 0.026 5.6E-07 55.0 17.5 151 452-610 116-271 (299)
151 PF12895 Apc3: Anaphase-promot 97.3 0.00029 6.3E-09 57.8 3.9 47 560-606 3-50 (84)
152 KOG1125 TPR repeat-containing 97.3 0.0087 1.9E-07 64.4 15.6 182 191-375 297-492 (579)
153 PLN03088 SGT1, suppressor of 97.2 0.0035 7.5E-08 67.2 12.5 93 522-619 9-105 (356)
154 PF04840 Vps16_C: Vps16, C-ter 97.2 0.39 8.4E-06 50.2 31.8 109 518-643 180-288 (319)
155 PRK02603 photosystem I assembl 97.2 0.0074 1.6E-07 57.3 13.4 85 545-632 34-121 (172)
156 KOG0553 TPR repeat-containing 97.2 0.0024 5.2E-08 63.3 9.9 85 554-643 89-175 (304)
157 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0042 9.1E-08 54.7 10.9 99 583-699 4-106 (119)
158 PRK15179 Vi polysaccharide bio 97.1 0.034 7.3E-07 64.4 20.1 130 178-309 85-217 (694)
159 PF13432 TPR_16: Tetratricopep 97.1 0.00082 1.8E-08 51.9 5.0 58 623-698 3-60 (65)
160 cd00189 TPR Tetratricopeptide 97.1 0.0032 7E-08 52.3 9.2 92 548-643 2-94 (100)
161 cd00189 TPR Tetratricopeptide 97.1 0.0047 1E-07 51.2 10.2 89 518-608 3-95 (100)
162 KOG0553 TPR repeat-containing 97.1 0.0052 1.1E-07 60.9 11.4 101 564-697 76-177 (304)
163 PF14559 TPR_19: Tetratricopep 97.1 0.00086 1.9E-08 52.3 4.8 53 627-697 1-53 (68)
164 PRK15363 pathogenicity island 97.0 0.009 2E-07 54.1 11.2 90 521-612 41-134 (157)
165 PF13414 TPR_11: TPR repeat; P 96.9 0.00099 2.1E-08 52.2 3.9 63 617-697 3-66 (69)
166 PRK10153 DNA-binding transcrip 96.9 0.02 4.3E-07 64.2 15.1 136 542-698 333-482 (517)
167 PF14938 SNAP: Soluble NSF att 96.9 0.4 8.6E-06 49.7 23.8 97 548-644 157-264 (282)
168 PRK02603 photosystem I assembl 96.9 0.0097 2.1E-07 56.5 10.8 98 582-697 36-148 (172)
169 KOG1538 Uncharacterized conser 96.8 0.083 1.8E-06 57.5 18.1 54 545-607 746-799 (1081)
170 CHL00033 ycf3 photosystem I as 96.8 0.041 8.8E-07 52.0 14.6 95 546-643 35-139 (168)
171 PF12895 Apc3: Anaphase-promot 96.8 0.0026 5.6E-08 52.1 5.4 76 528-606 2-83 (84)
172 PF14559 TPR_19: Tetratricopep 96.7 0.0036 7.9E-08 48.7 5.8 48 593-643 3-51 (68)
173 KOG3060 Uncharacterized conser 96.7 0.16 3.4E-06 49.4 17.5 163 511-696 47-218 (289)
174 PRK10153 DNA-binding transcrip 96.7 0.039 8.4E-07 61.9 15.7 121 530-671 357-489 (517)
175 KOG0550 Molecular chaperone (D 96.7 0.011 2.4E-07 60.9 10.0 253 421-697 57-349 (486)
176 COG5107 RNA14 Pre-mRNA 3'-end 96.7 1.1 2.4E-05 47.2 27.8 86 134-222 30-117 (660)
177 PF05843 Suf: Suppressor of fo 96.7 0.042 9.2E-07 56.7 14.5 133 447-584 4-143 (280)
178 KOG1538 Uncharacterized conser 96.6 0.22 4.8E-06 54.4 19.6 39 162-203 618-656 (1081)
179 CHL00033 ycf3 photosystem I as 96.6 0.012 2.6E-07 55.6 9.6 96 582-695 36-139 (168)
180 KOG2796 Uncharacterized conser 96.6 0.061 1.3E-06 52.2 13.7 164 518-700 139-317 (366)
181 PF08579 RPM2: Mitochondrial r 96.6 0.026 5.6E-07 47.4 9.9 80 147-226 28-116 (120)
182 PF06239 ECSIT: Evolutionarily 96.6 0.016 3.4E-07 55.1 9.7 98 534-632 33-153 (228)
183 PF12688 TPR_5: Tetratrico pep 96.6 0.038 8.1E-07 48.3 11.4 90 551-643 6-101 (120)
184 PRK10866 outer membrane biogen 96.6 0.16 3.4E-06 51.1 17.5 150 524-696 41-239 (243)
185 PF10037 MRP-S27: Mitochondria 96.6 0.021 4.6E-07 61.3 11.7 117 111-227 64-186 (429)
186 PF13371 TPR_9: Tetratricopept 96.5 0.0053 1.1E-07 48.6 5.5 58 624-699 2-59 (73)
187 PF05843 Suf: Suppressor of fo 96.5 0.012 2.6E-07 60.8 9.4 82 561-643 51-133 (280)
188 PF06239 ECSIT: Evolutionarily 96.5 0.05 1.1E-06 51.8 12.1 116 177-307 45-166 (228)
189 PF13431 TPR_17: Tetratricopep 96.5 0.0019 4.1E-08 42.1 2.0 29 661-689 5-33 (34)
190 PF10037 MRP-S27: Mitochondria 96.4 0.062 1.4E-06 57.8 14.4 120 474-594 61-186 (429)
191 KOG2041 WD40 repeat protein [G 96.4 1.6 3.5E-05 48.5 24.6 153 126-305 747-903 (1189)
192 PF08579 RPM2: Mitochondrial r 96.4 0.041 8.8E-07 46.3 10.0 81 548-629 27-116 (120)
193 PF14938 SNAP: Soluble NSF att 96.4 0.85 1.8E-05 47.2 22.3 43 321-375 100-143 (282)
194 COG4700 Uncharacterized protei 96.3 0.37 8E-06 44.5 16.2 145 531-696 76-220 (251)
195 PF13432 TPR_16: Tetratricopep 96.3 0.01 2.2E-07 45.7 5.6 53 554-608 5-58 (65)
196 PRK10803 tol-pal system protei 96.1 0.075 1.6E-06 53.9 12.4 93 549-643 146-243 (263)
197 PRK15331 chaperone protein Sic 96.1 0.18 3.9E-06 46.1 13.0 111 588-745 44-154 (165)
198 COG3898 Uncharacterized membra 96.0 0.79 1.7E-05 47.4 18.7 155 528-697 133-291 (531)
199 COG4235 Cytochrome c biogenesi 96.0 0.061 1.3E-06 53.9 10.7 102 580-701 155-259 (287)
200 PF13414 TPR_11: TPR repeat; P 96.0 0.024 5.2E-07 44.2 6.5 62 545-608 2-65 (69)
201 KOG2280 Vacuolar assembly/sort 95.9 3.2 7E-05 46.8 24.0 113 313-468 682-794 (829)
202 KOG1920 IkappaB kinase complex 95.9 1.4 3.1E-05 52.2 22.3 158 426-643 893-1052(1265)
203 PF07079 DUF1347: Protein of u 95.9 3 6.6E-05 44.3 33.8 343 285-654 133-530 (549)
204 PF13428 TPR_14: Tetratricopep 95.8 0.011 2.5E-07 41.2 3.4 42 618-677 2-43 (44)
205 PRK10803 tol-pal system protei 95.8 0.075 1.6E-06 53.9 10.6 96 582-698 144-246 (263)
206 COG4700 Uncharacterized protei 95.7 1.8 3.8E-05 40.2 17.6 129 509-642 83-218 (251)
207 KOG2280 Vacuolar assembly/sort 95.6 5.3 0.00012 45.2 31.3 109 518-642 687-795 (829)
208 PF03704 BTAD: Bacterial trans 95.6 0.17 3.8E-06 46.4 11.6 106 556-697 16-124 (146)
209 PRK10866 outer membrane biogen 95.5 0.82 1.8E-05 46.0 16.8 54 420-473 39-98 (243)
210 KOG2796 Uncharacterized conser 95.4 0.43 9.4E-06 46.5 13.2 170 217-388 139-325 (366)
211 KOG0543 FKBP-type peptidyl-pro 95.1 0.17 3.6E-06 52.8 10.5 128 552-745 214-341 (397)
212 PLN03098 LPA1 LOW PSII ACCUMUL 95.1 0.049 1.1E-06 58.0 6.8 64 617-698 75-141 (453)
213 PF13371 TPR_9: Tetratricopept 95.0 0.092 2E-06 41.4 6.9 51 524-574 4-57 (73)
214 PF07079 DUF1347: Protein of u 95.0 5.9 0.00013 42.2 38.2 372 183-624 132-532 (549)
215 PF12688 TPR_5: Tetratrico pep 94.9 0.52 1.1E-05 41.2 11.7 106 251-357 7-116 (120)
216 KOG2066 Vacuolar assembly/sort 94.9 8.4 0.00018 43.9 23.2 113 562-696 610-727 (846)
217 COG5107 RNA14 Pre-mRNA 3'-end 94.8 6.5 0.00014 41.8 33.1 96 24-122 21-118 (660)
218 smart00299 CLH Clathrin heavy 94.8 1.4 2.9E-05 40.1 14.8 121 519-659 11-135 (140)
219 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.23 4.9E-06 53.1 10.4 76 669-747 246-329 (453)
220 PF12921 ATP13: Mitochondrial 94.6 0.46 1E-05 42.0 10.5 98 546-664 2-103 (126)
221 COG3898 Uncharacterized membra 94.5 7 0.00015 40.8 24.7 221 425-654 166-400 (531)
222 PF03704 BTAD: Bacterial trans 94.2 0.19 4.2E-06 46.1 7.7 65 519-583 66-138 (146)
223 COG4235 Cytochrome c biogenesi 94.2 0.94 2E-05 45.6 12.8 96 512-609 153-255 (287)
224 PF13424 TPR_12: Tetratricopep 94.0 0.1 2.2E-06 41.8 4.9 62 547-608 6-73 (78)
225 PF13281 DUF4071: Domain of un 94.0 6.3 0.00014 41.9 19.1 169 520-698 146-334 (374)
226 KOG3941 Intermediate in Toll s 94.0 0.37 8E-06 47.5 9.2 111 533-644 52-186 (406)
227 PF04840 Vps16_C: Vps16, C-ter 93.9 9.8 0.00021 39.9 31.6 47 322-369 184-230 (319)
228 PF13424 TPR_12: Tetratricopep 93.8 0.12 2.6E-06 41.3 5.1 57 517-573 7-73 (78)
229 KOG3941 Intermediate in Toll s 93.6 0.56 1.2E-05 46.2 9.8 99 29-127 51-172 (406)
230 PF12921 ATP13: Mitochondrial 93.6 0.59 1.3E-05 41.3 9.2 98 514-627 1-98 (126)
231 PRK11906 transcriptional regul 93.0 3.2 7E-05 44.7 15.1 110 561-693 319-431 (458)
232 PRK11906 transcriptional regul 92.9 1.6 3.4E-05 47.0 12.7 130 547-697 252-400 (458)
233 PF13525 YfiO: Outer membrane 92.9 8 0.00017 37.7 17.1 62 48-109 10-73 (203)
234 COG0457 NrfG FOG: TPR repeat [ 92.8 10 0.00022 36.9 21.7 159 516-697 96-264 (291)
235 smart00299 CLH Clathrin heavy 92.8 5.6 0.00012 35.9 15.0 84 286-374 13-96 (140)
236 KOG0550 Molecular chaperone (D 92.7 15 0.00033 38.8 21.2 160 422-608 178-348 (486)
237 PF13525 YfiO: Outer membrane 92.6 4.3 9.4E-05 39.5 14.8 142 525-689 15-198 (203)
238 KOG0543 FKBP-type peptidyl-pro 92.6 1 2.2E-05 47.2 10.4 138 522-697 215-354 (397)
239 PRK15331 chaperone protein Sic 92.5 0.75 1.6E-05 42.1 8.4 84 525-609 47-133 (165)
240 PF13512 TPR_18: Tetratricopep 92.4 0.98 2.1E-05 40.4 8.9 67 526-594 21-95 (142)
241 COG3118 Thioredoxin domain-con 92.3 4.9 0.00011 40.5 14.3 143 533-697 121-264 (304)
242 COG1729 Uncharacterized protei 91.7 1.5 3.3E-05 43.6 10.1 93 548-643 144-241 (262)
243 PF08631 SPO22: Meiosis protei 91.4 19 0.00041 37.1 19.9 216 424-641 4-270 (278)
244 PF08631 SPO22: Meiosis protei 91.1 2.6 5.6E-05 43.5 11.9 139 526-666 4-173 (278)
245 PF10300 DUF3808: Protein of u 91.1 3.9 8.4E-05 45.7 13.9 116 528-644 246-374 (468)
246 PF13170 DUF4003: Protein of u 91.0 7.4 0.00016 40.3 14.9 92 531-625 119-225 (297)
247 PF13512 TPR_18: Tetratricopep 90.6 1.7 3.8E-05 38.9 8.5 51 593-643 22-73 (142)
248 KOG2610 Uncharacterized conser 90.4 3.3 7.2E-05 42.1 11.0 160 528-705 116-283 (491)
249 KOG2066 Vacuolar assembly/sort 90.0 42 0.0009 38.7 21.7 75 215-292 393-467 (846)
250 COG3629 DnrI DNA-binding trans 90.0 2 4.4E-05 43.4 9.5 75 516-590 154-236 (280)
251 COG0457 NrfG FOG: TPR repeat [ 89.9 20 0.00043 34.8 20.0 162 515-698 59-231 (291)
252 KOG1130 Predicted G-alpha GTPa 89.4 2.7 5.8E-05 43.9 9.8 56 417-472 279-343 (639)
253 COG1729 Uncharacterized protei 89.3 2.9 6.3E-05 41.7 9.8 101 583-699 144-245 (262)
254 PF09205 DUF1955: Domain of un 89.3 12 0.00026 32.8 12.1 66 618-701 87-152 (161)
255 KOG1920 IkappaB kinase complex 89.3 60 0.0013 39.4 21.5 99 329-471 894-992 (1265)
256 KOG4555 TPR repeat-containing 89.3 5.8 0.00013 34.6 10.1 86 556-643 53-141 (175)
257 PF09205 DUF1955: Domain of un 89.0 15 0.00033 32.2 13.3 58 419-476 92-152 (161)
258 PF10300 DUF3808: Protein of u 89.0 12 0.00026 41.8 15.7 131 548-697 231-375 (468)
259 PF13176 TPR_7: Tetratricopept 89.0 0.88 1.9E-05 29.9 4.2 27 548-574 1-27 (36)
260 PF10602 RPN7: 26S proteasome 88.9 3.4 7.4E-05 39.2 9.7 95 548-644 38-140 (177)
261 PF00515 TPR_1: Tetratricopept 88.9 0.98 2.1E-05 29.0 4.4 32 547-580 2-33 (34)
262 PF04053 Coatomer_WDAD: Coatom 88.9 16 0.00034 40.3 16.1 157 153-340 270-427 (443)
263 PF13176 TPR_7: Tetratricopept 88.5 0.63 1.4E-05 30.6 3.2 26 671-696 1-26 (36)
264 PF13428 TPR_14: Tetratricopep 88.4 1.4 3E-05 30.5 5.1 33 548-582 3-35 (44)
265 PF04053 Coatomer_WDAD: Coatom 88.4 6.6 0.00014 43.2 12.8 131 283-470 298-428 (443)
266 COG4785 NlpI Lipoprotein NlpI, 88.1 8.7 0.00019 36.8 11.4 166 525-697 75-265 (297)
267 KOG4555 TPR repeat-containing 87.4 5.2 0.00011 34.8 8.7 85 524-608 52-142 (175)
268 PF00637 Clathrin: Region in C 87.1 0.056 1.2E-06 49.5 -3.5 86 286-375 13-98 (143)
269 PF13281 DUF4071: Domain of un 86.9 47 0.001 35.4 19.2 71 418-488 146-226 (374)
270 KOG2114 Vacuolar assembly/sort 86.5 72 0.0016 37.2 27.9 142 119-268 340-486 (933)
271 COG4105 ComL DNA uptake lipopr 86.2 38 0.00083 33.7 16.4 169 424-608 45-231 (254)
272 PF07035 Mic1: Colon cancer-as 85.9 30 0.00064 32.2 14.7 32 307-338 21-52 (167)
273 COG4105 ComL DNA uptake lipopr 85.9 39 0.00085 33.6 19.3 50 672-747 170-219 (254)
274 PF07719 TPR_2: Tetratricopept 85.4 0.75 1.6E-05 29.5 2.3 25 619-643 3-27 (34)
275 COG3629 DnrI DNA-binding trans 85.2 2.7 5.9E-05 42.5 7.1 62 618-697 154-215 (280)
276 KOG1130 Predicted G-alpha GTPa 85.1 5.4 0.00012 41.8 9.1 58 517-574 277-343 (639)
277 PF04184 ST7: ST7 protein; In 84.8 11 0.00023 41.1 11.5 69 621-707 263-333 (539)
278 PF07035 Mic1: Colon cancer-as 84.6 20 0.00044 33.3 11.9 134 63-207 14-148 (167)
279 PF07719 TPR_2: Tetratricopept 84.4 2.1 4.6E-05 27.3 4.1 31 548-580 3-33 (34)
280 PF00515 TPR_1: Tetratricopept 84.2 0.67 1.4E-05 29.8 1.6 25 619-643 3-27 (34)
281 TIGR02561 HrpB1_HrpK type III 84.1 2.6 5.6E-05 37.9 5.6 54 629-700 22-75 (153)
282 PF13170 DUF4003: Protein of u 84.0 19 0.00042 37.3 12.9 60 262-321 160-223 (297)
283 COG1747 Uncharacterized N-term 83.6 74 0.0016 34.9 17.2 169 146-322 68-246 (711)
284 PF02259 FAT: FAT domain; Int 83.6 64 0.0014 34.4 17.8 66 544-609 144-212 (352)
285 COG3118 Thioredoxin domain-con 82.7 59 0.0013 33.1 16.9 134 494-631 148-286 (304)
286 PF09613 HrpB1_HrpK: Bacterial 82.5 3.9 8.4E-05 37.4 6.2 64 619-700 9-75 (160)
287 KOG1258 mRNA processing protei 82.1 93 0.002 34.9 28.4 173 414-591 298-485 (577)
288 PF04097 Nic96: Nup93/Nic96; 82.1 1.1E+02 0.0023 35.7 26.4 38 355-394 266-303 (613)
289 KOG2610 Uncharacterized conser 81.4 70 0.0015 33.0 15.2 145 494-642 117-272 (491)
290 COG4649 Uncharacterized protei 81.1 20 0.00042 33.2 10.0 19 357-375 177-195 (221)
291 KOG4234 TPR repeat-containing 80.8 16 0.00034 34.7 9.5 56 625-698 142-197 (271)
292 KOG4648 Uncharacterized conser 80.4 4.5 9.7E-05 41.3 6.4 48 555-604 106-154 (536)
293 PF10602 RPN7: 26S proteasome 80.1 20 0.00043 34.0 10.6 92 249-342 40-140 (177)
294 KOG4570 Uncharacterized conser 80.0 7.1 0.00015 39.5 7.5 92 514-609 63-163 (418)
295 KOG4570 Uncharacterized conser 80.0 6 0.00013 40.0 7.0 99 107-209 58-165 (418)
296 PF04184 ST7: ST7 protein; In 79.4 89 0.0019 34.4 15.8 57 550-607 263-321 (539)
297 TIGR02508 type_III_yscG type I 79.0 23 0.00049 29.4 8.7 61 523-586 47-107 (115)
298 PF13181 TPR_8: Tetratricopept 79.0 3.2 7E-05 26.5 3.5 31 548-580 3-33 (34)
299 PRK09687 putative lyase; Provi 78.5 85 0.0019 32.3 26.2 220 410-643 34-260 (280)
300 PF13374 TPR_10: Tetratricopep 77.7 5.2 0.00011 26.8 4.5 28 547-574 3-30 (42)
301 PRK09687 putative lyase; Provi 77.5 91 0.002 32.1 24.6 237 212-490 35-278 (280)
302 PF07721 TPR_4: Tetratricopept 77.1 3.9 8.5E-05 24.4 3.1 24 670-693 2-25 (26)
303 KOG0276 Vesicle coat complex C 76.9 28 0.0006 38.7 11.3 101 525-643 647-747 (794)
304 PF00637 Clathrin: Region in C 76.8 2.7 5.8E-05 38.2 3.5 84 84-170 13-96 (143)
305 KOG2396 HAT (Half-A-TPR) repea 76.1 24 0.00052 38.4 10.5 97 562-678 87-183 (568)
306 KOG2114 Vacuolar assembly/sort 76.0 1.7E+02 0.0036 34.4 28.9 176 219-441 339-518 (933)
307 KOG3364 Membrane protein invol 75.5 35 0.00075 30.3 9.4 64 578-643 29-97 (149)
308 KOG1941 Acetylcholine receptor 75.2 1.1E+02 0.0024 32.0 14.5 132 550-693 126-270 (518)
309 KOG0276 Vesicle coat complex C 74.7 31 0.00067 38.4 11.0 123 227-376 599-721 (794)
310 PF13374 TPR_10: Tetratricopep 73.5 5.4 0.00012 26.7 3.6 28 670-697 3-30 (42)
311 PF13174 TPR_6: Tetratricopept 71.3 5.3 0.00011 25.1 3.0 28 671-698 2-29 (33)
312 KOG1585 Protein required for f 70.7 1.2E+02 0.0025 30.2 14.9 116 317-471 93-217 (308)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 70.7 24 0.00052 29.1 6.9 46 262-307 24-69 (103)
314 PF13431 TPR_17: Tetratricopep 70.5 6.4 0.00014 25.4 3.1 31 203-234 3-33 (34)
315 COG3947 Response regulator con 69.6 1.1E+02 0.0024 31.0 12.6 56 550-607 283-339 (361)
316 PF10345 Cohesin_load: Cohesin 68.8 2.4E+02 0.0051 33.0 30.2 160 45-205 61-251 (608)
317 KOG1550 Extracellular protein 68.7 61 0.0013 37.2 12.7 158 525-704 259-432 (552)
318 KOG4507 Uncharacterized conser 68.3 12 0.00026 41.3 6.2 126 531-678 589-719 (886)
319 PF07721 TPR_4: Tetratricopept 68.1 8.8 0.00019 22.9 3.2 22 620-641 4-25 (26)
320 KOG1586 Protein required for f 68.1 1.1E+02 0.0024 30.1 11.8 25 288-312 162-186 (288)
321 TIGR02561 HrpB1_HrpK type III 67.9 96 0.0021 28.2 12.7 97 593-696 22-120 (153)
322 COG1747 Uncharacterized N-term 67.7 2E+02 0.0044 31.8 19.1 164 512-698 63-234 (711)
323 PF10345 Cohesin_load: Cohesin 67.5 2.5E+02 0.0054 32.8 32.4 50 594-643 547-603 (608)
324 COG3947 Response regulator con 67.5 15 0.00033 36.9 6.3 59 621-697 283-341 (361)
325 PF13181 TPR_8: Tetratricopept 67.4 10 0.00022 24.0 3.7 28 670-697 2-29 (34)
326 KOG4234 TPR repeat-containing 66.3 39 0.00085 32.1 8.3 86 553-643 102-194 (271)
327 PF09613 HrpB1_HrpK: Bacterial 65.7 1.1E+02 0.0024 28.2 12.5 66 592-660 21-88 (160)
328 PF14853 Fis1_TPR_C: Fis1 C-te 65.5 36 0.00078 24.7 6.4 50 672-747 4-53 (53)
329 cd00923 Cyt_c_Oxidase_Va Cytoc 65.0 38 0.00082 28.0 7.0 60 563-624 24-83 (103)
330 PF06552 TOM20_plant: Plant sp 64.4 25 0.00054 32.9 6.7 62 562-628 51-124 (186)
331 PF02284 COX5A: Cytochrome c o 64.3 43 0.00093 28.0 7.3 60 564-625 28-87 (108)
332 KOG1464 COP9 signalosome, subu 64.2 1.6E+02 0.0035 29.4 15.5 206 425-631 39-286 (440)
333 TIGR02508 type_III_yscG type I 64.1 83 0.0018 26.3 8.7 86 195-284 21-106 (115)
334 PF13174 TPR_6: Tetratricopept 64.0 9.8 0.00021 23.8 3.1 23 552-574 6-28 (33)
335 PF02284 COX5A: Cytochrome c o 63.1 49 0.0011 27.7 7.4 59 263-322 28-86 (108)
336 KOG1585 Protein required for f 62.7 1.7E+02 0.0036 29.1 17.9 52 552-604 196-250 (308)
337 COG2976 Uncharacterized protei 62.4 1.4E+02 0.003 28.6 11.2 55 522-576 133-189 (207)
338 PF11207 DUF2989: Protein of u 60.8 51 0.0011 31.6 8.3 74 563-637 123-198 (203)
339 PRK10941 hypothetical protein; 60.5 42 0.0009 34.2 8.3 60 621-698 185-244 (269)
340 PF13762 MNE1: Mitochondrial s 60.3 65 0.0014 29.2 8.5 77 116-192 42-128 (145)
341 KOG1941 Acetylcholine receptor 60.0 1.5E+02 0.0032 31.1 11.8 190 417-607 47-272 (518)
342 PF11207 DUF2989: Protein of u 59.7 44 0.00095 32.0 7.6 71 61-132 124-197 (203)
343 PF04190 DUF410: Protein of un 59.1 1.8E+02 0.0038 29.6 12.7 29 314-342 89-117 (260)
344 smart00028 TPR Tetratricopepti 58.7 18 0.00039 21.6 3.7 27 548-574 3-29 (34)
345 PF13929 mRNA_stabil: mRNA sta 58.6 2.2E+02 0.0048 29.1 14.4 53 312-364 199-255 (292)
346 PF09477 Type_III_YscG: Bacter 57.7 89 0.0019 26.5 8.1 59 523-584 48-106 (116)
347 PF04190 DUF410: Protein of un 57.5 2.2E+02 0.0048 28.9 14.6 83 513-610 88-170 (260)
348 PHA02875 ankyrin repeat protei 57.5 1.7E+02 0.0036 32.1 13.4 76 155-238 10-89 (413)
349 PHA02875 ankyrin repeat protei 57.1 2.9E+02 0.0064 30.1 16.9 132 55-199 11-152 (413)
350 COG2976 Uncharacterized protei 56.8 1.1E+02 0.0024 29.2 9.5 57 418-474 131-189 (207)
351 COG4649 Uncharacterized protei 56.5 1.7E+02 0.0038 27.3 15.6 124 556-697 68-195 (221)
352 COG4455 ImpE Protein of avirul 55.7 29 0.00064 33.4 5.7 59 621-697 5-63 (273)
353 PF13934 ELYS: Nuclear pore co 55.7 94 0.002 30.8 9.8 99 549-659 79-182 (226)
354 PF13934 ELYS: Nuclear pore co 54.5 1.2E+02 0.0026 30.0 10.3 115 527-650 90-205 (226)
355 KOG4648 Uncharacterized conser 52.6 84 0.0018 32.5 8.6 114 523-643 105-221 (536)
356 KOG0686 COP9 signalosome, subu 52.3 2.2E+02 0.0047 30.6 11.7 92 517-610 152-258 (466)
357 PF04097 Nic96: Nup93/Nic96; 52.2 4.4E+02 0.0096 30.7 20.4 93 418-510 116-227 (613)
358 PRK15180 Vi polysaccharide bio 51.5 1.3E+02 0.0029 32.6 10.2 140 559-722 302-442 (831)
359 PRK11619 lytic murein transgly 49.7 4.9E+02 0.011 30.5 29.0 117 559-696 254-373 (644)
360 PF10366 Vps39_1: Vacuolar sor 48.5 1.4E+02 0.003 25.5 8.4 27 548-574 41-67 (108)
361 PF02259 FAT: FAT domain; Int 48.3 1.4E+02 0.0031 31.6 10.9 160 522-699 5-176 (352)
362 KOG1550 Extracellular protein 48.0 4.8E+02 0.01 29.9 16.6 175 129-310 228-427 (552)
363 KOG3807 Predicted membrane pro 46.8 88 0.0019 32.2 7.8 99 494-605 230-335 (556)
364 PRK13342 recombination factor 46.7 3.7E+02 0.0081 29.5 13.8 36 147-182 230-268 (413)
365 COG2909 MalT ATP-dependent tra 45.6 6.1E+02 0.013 30.4 18.5 22 622-643 623-644 (894)
366 PF10579 Rapsyn_N: Rapsyn N-te 45.3 55 0.0012 26.0 4.8 45 559-603 19-65 (80)
367 PF11663 Toxin_YhaV: Toxin wit 45.1 24 0.00051 31.2 3.1 34 556-591 105-138 (140)
368 PF15161 Neuropep_like: Neurop 44.9 12 0.00025 26.8 1.0 19 793-812 11-29 (65)
369 TIGR03504 FimV_Cterm FimV C-te 43.8 47 0.001 23.0 3.9 25 552-576 5-29 (44)
370 PRK13342 recombination factor 43.7 4.8E+02 0.01 28.6 15.2 112 161-290 154-275 (413)
371 PF11663 Toxin_YhaV: Toxin wit 43.4 28 0.0006 30.8 3.3 31 56-88 108-138 (140)
372 KOG2063 Vacuolar assembly/sort 43.3 5.2E+02 0.011 31.3 14.5 38 153-190 600-637 (877)
373 PF14853 Fis1_TPR_C: Fis1 C-te 42.9 71 0.0015 23.2 4.9 35 552-588 7-41 (53)
374 TIGR03504 FimV_Cterm FimV C-te 42.5 41 0.00088 23.3 3.4 23 450-472 5-27 (44)
375 PF14561 TPR_20: Tetratricopep 40.4 35 0.00076 28.0 3.4 37 662-698 15-51 (90)
376 PF10366 Vps39_1: Vacuolar sor 39.1 74 0.0016 27.2 5.3 28 445-472 40-67 (108)
377 COG2178 Predicted RNA-binding 38.9 1.9E+02 0.0041 27.6 8.1 86 525-611 39-151 (204)
378 PF10579 Rapsyn_N: Rapsyn N-te 38.3 55 0.0012 26.0 3.9 48 593-640 18-66 (80)
379 PF14689 SPOB_a: Sensor_kinase 38.0 48 0.001 25.0 3.5 22 552-573 29-50 (62)
380 KOG1308 Hsp70-interacting prot 38.0 14 0.00031 38.1 0.8 90 593-703 126-216 (377)
381 KOG2034 Vacuolar sorting prote 37.7 7.9E+02 0.017 29.5 20.7 130 417-563 508-645 (911)
382 PRK10564 maltose regulon perip 37.4 57 0.0012 33.4 4.9 42 547-588 258-299 (303)
383 PF13929 mRNA_stabil: mRNA sta 37.4 4.8E+02 0.01 26.8 13.2 58 211-268 199-261 (292)
384 PF05570 DUF765: Circovirus pr 37.2 25 0.00054 20.6 1.4 19 2-20 8-26 (29)
385 KOG1258 mRNA processing protei 36.8 6.8E+02 0.015 28.4 31.9 167 515-684 297-490 (577)
386 cd07229 Pat_TGL3_like Triacylg 35.8 1.3E+02 0.0028 32.5 7.6 16 645-660 233-248 (391)
387 COG4941 Predicted RNA polymera 35.8 4.3E+02 0.0093 27.7 10.6 110 530-643 271-391 (415)
388 PF13762 MNE1: Mitochondrial s 35.4 3.5E+02 0.0075 24.6 11.2 48 546-593 79-127 (145)
389 PF04910 Tcf25: Transcriptiona 34.7 5.8E+02 0.013 27.4 12.4 128 524-684 19-153 (360)
390 PF11838 ERAP1_C: ERAP1-like C 34.7 5.5E+02 0.012 26.7 16.6 185 221-438 45-262 (324)
391 PF07163 Pex26: Pex26 protein; 34.6 1.9E+02 0.0042 29.3 7.9 84 84-167 89-181 (309)
392 PF14689 SPOB_a: Sensor_kinase 34.6 70 0.0015 24.1 3.9 45 563-609 7-51 (62)
393 PF10255 Paf67: RNA polymerase 34.2 1.3E+02 0.0028 32.7 7.2 66 621-696 126-191 (404)
394 cd08819 CARD_MDA5_2 Caspase ac 34.0 2.2E+02 0.0048 23.2 6.7 65 198-264 21-85 (88)
395 KOG0376 Serine-threonine phosp 33.9 1.1E+02 0.0024 33.4 6.7 34 662-695 65-98 (476)
396 KOG0292 Vesicle coat complex C 33.8 4.6E+02 0.01 31.3 11.6 134 524-701 652-785 (1202)
397 PF11846 DUF3366: Domain of un 33.6 92 0.002 29.9 5.7 33 577-609 140-172 (193)
398 PF09477 Type_III_YscG: Bacter 33.6 3E+02 0.0066 23.5 10.1 81 192-275 19-99 (116)
399 PRK13800 putative oxidoreducta 33.0 1E+03 0.022 29.4 23.5 182 412-609 697-880 (897)
400 PF11848 DUF3368: Domain of un 32.5 1.3E+02 0.0028 21.2 4.8 32 256-287 13-44 (48)
401 PRK15180 Vi polysaccharide bio 32.2 3.4E+02 0.0074 29.7 9.7 82 526-608 334-418 (831)
402 PF07575 Nucleopor_Nup85: Nup8 31.8 1.4E+02 0.0031 34.4 7.8 42 27-69 282-323 (566)
403 KOG1498 26S proteasome regulat 31.4 6.8E+02 0.015 26.9 14.1 136 518-679 134-279 (439)
404 COG5159 RPN6 26S proteasome re 31.1 5.8E+02 0.012 26.1 10.4 32 355-386 11-42 (421)
405 PF06552 TOM20_plant: Plant sp 31.0 1.1E+02 0.0024 28.8 5.3 69 532-608 52-134 (186)
406 PF07163 Pex26: Pex26 protein; 30.6 3.9E+02 0.0086 27.2 9.3 85 252-338 90-181 (309)
407 KOG1464 COP9 signalosome, subu 30.5 5.8E+02 0.013 25.7 13.0 74 417-491 149-238 (440)
408 PF08311 Mad3_BUB1_I: Mad3/BUB 30.3 3.8E+02 0.0083 23.6 9.2 43 564-606 81-124 (126)
409 PF11525 CopK: Copper resistan 30.0 18 0.0004 27.3 0.1 21 814-834 8-28 (73)
410 PF11846 DUF3366: Domain of un 29.9 1.3E+02 0.0028 28.9 6.1 35 543-579 141-175 (193)
411 PHA03100 ankyrin repeat protei 29.5 8.3E+02 0.018 27.2 15.1 227 63-304 48-304 (480)
412 PF11848 DUF3368: Domain of un 29.0 1.5E+02 0.0033 20.9 4.7 32 156-187 14-45 (48)
413 KOG4642 Chaperone-dependent E3 28.9 1.6E+02 0.0034 29.2 6.1 86 591-697 20-106 (284)
414 COG5159 RPN6 26S proteasome re 27.6 3.1E+02 0.0068 27.8 8.0 34 251-284 9-42 (421)
415 KOG4077 Cytochrome c oxidase, 27.3 2.8E+02 0.006 24.4 6.6 46 264-309 68-113 (149)
416 KOG3824 Huntingtin interacting 27.1 84 0.0018 32.0 4.1 51 627-695 126-176 (472)
417 PF11768 DUF3312: Protein of u 26.9 6.9E+02 0.015 28.2 11.3 56 520-575 413-473 (545)
418 KOG4077 Cytochrome c oxidase, 26.8 3.2E+02 0.007 24.1 6.9 58 565-624 68-125 (149)
419 PF08225 Antimicrobial19: Pseu 26.4 37 0.00081 18.9 0.9 12 799-810 10-21 (23)
420 KOG0545 Aryl-hydrocarbon recep 25.9 6.8E+02 0.015 25.1 13.0 82 620-745 233-315 (329)
421 cd08819 CARD_MDA5_2 Caspase ac 25.4 2.7E+02 0.0059 22.7 5.9 38 425-463 48-85 (88)
422 PF14561 TPR_20: Tetratricopep 25.4 3.1E+02 0.0066 22.5 6.6 62 616-695 21-85 (90)
423 PRK10564 maltose regulon perip 24.9 1.1E+02 0.0024 31.3 4.6 38 248-285 260-297 (303)
424 TIGR01503 MthylAspMut_E methyl 24.7 5.9E+02 0.013 28.1 10.0 198 494-721 68-294 (480)
425 COG2178 Predicted RNA-binding 24.5 6.4E+02 0.014 24.2 9.0 50 423-472 39-97 (204)
426 KOG0403 Neoplastic transformat 24.1 9.7E+02 0.021 26.2 22.1 386 58-475 138-574 (645)
427 COG4455 ImpE Protein of avirul 23.7 7.1E+02 0.015 24.5 12.4 58 549-608 4-62 (273)
428 KOG0687 26S proteasome regulat 23.6 8.6E+02 0.019 25.5 13.1 159 427-608 36-208 (393)
429 PF09670 Cas_Cas02710: CRISPR- 23.6 5.5E+02 0.012 27.8 10.0 52 556-608 141-196 (379)
430 cd00280 TRFH Telomeric Repeat 23.3 3.1E+02 0.0067 26.0 6.6 46 597-643 85-137 (200)
431 PF07575 Nucleopor_Nup85: Nup8 23.1 4.7E+02 0.01 30.2 10.0 33 359-391 507-539 (566)
432 PF02847 MA3: MA3 domain; Int 23.0 3.2E+02 0.0068 23.2 6.7 21 450-470 8-28 (113)
433 PF11768 DUF3312: Protein of u 22.9 5.3E+02 0.012 29.0 9.6 108 418-546 413-525 (545)
434 PF14669 Asp_Glu_race_2: Putat 22.0 7.1E+02 0.015 23.9 15.1 67 234-310 96-162 (233)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 22.0 4.9E+02 0.011 22.9 7.7 45 364-438 80-124 (126)
436 cd08326 CARD_CASP9 Caspase act 21.9 2.5E+02 0.0054 22.7 5.2 63 198-264 18-80 (84)
437 PF00244 14-3-3: 14-3-3 protei 21.7 8.1E+02 0.017 24.4 10.7 40 450-489 7-46 (236)
438 PRK11619 lytic murein transgly 21.4 1.4E+03 0.029 26.9 40.9 268 114-441 100-374 (644)
439 KOG1515 Arylacetamide deacetyl 21.1 2.1E+02 0.0046 30.3 6.0 46 685-734 282-327 (336)
440 KOG3507 DNA-directed RNA polym 20.9 33 0.00072 25.0 0.0 13 794-806 19-31 (62)
441 PF09986 DUF2225: Uncharacteri 20.8 6.4E+02 0.014 24.7 9.0 21 623-643 171-191 (214)
442 KOG4521 Nuclear pore complex, 20.8 1.7E+03 0.037 27.9 14.3 154 524-691 929-1124(1480)
443 PF12069 DUF3549: Protein of u 20.2 1E+03 0.023 25.1 11.9 95 220-317 172-267 (340)
444 PF04034 DUF367: Domain of unk 20.1 5.4E+02 0.012 22.7 7.2 59 514-572 65-125 (127)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-154 Score=1384.14 Aligned_cols=794 Identities=35% Similarity=0.618 Sum_probs=782.2
Q ss_pred CCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHH
Q 046257 38 SPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVST 117 (838)
Q Consensus 38 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 117 (838)
.+.++..++|.++.+|++.|++.+|+.+|+.|.+.|++|+..+|..++++|.+.+.+..|.++|..+.+.+..+++.++|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVAT 197 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 197 (838)
+|+.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCC
Q 046257 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAE 277 (838)
Q Consensus 198 a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (838)
+.++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHH
Q 046257 278 LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGH 357 (838)
Q Consensus 278 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~ 357 (838)
||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|. .+|+++||+||.+|
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~ 364 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGY 364 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHH
Q 046257 358 LQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAA 433 (838)
Q Consensus 358 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~ 433 (838)
++.|++++|+++|++|.+.|+.||..||++++.+|++.+++ ++|..+.+.|+.++..++|+|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC
Q 046257 434 KVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN 513 (838)
Q Consensus 434 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (838)
++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++. +.++.++++|..+.+.|+.+
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~-g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI-GALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh-chHHHhHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999986 6999999999999999999 99999999999999999999
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
|..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH-------------
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR------------- 660 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~------------- 660 (838)
.|++++|.++|+.|.+++|+.|+.+||+||+++|+|+|++++|++++++||++||..+|++|+++|+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999999999999998899999999999999999999999999999999999999999999999998
Q ss_pred -HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHH
Q 046257 661 -LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELS 739 (838)
Q Consensus 661 -~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~ 739 (838)
+++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||+++++|.|++||.+||+.++||.+|++|.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~ 761 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFY 761 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccCCCCcccccCChHHHhhhhhhhhHHHHHHHHhccCCCCCcEEEEecccccCcchhhHHHhhhhhcceEEEe
Q 046257 740 TRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVATPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVR 819 (838)
Q Consensus 740 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~~~~r 819 (838)
.+|++.||+||+.++++ +++++|+..+++||||||+|||||+||||+||||+||||||+|||+++||||++++||||||
T Consensus 762 ~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~r 840 (857)
T PLN03077 762 EKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVR 840 (857)
T ss_pred HHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEe
Confidence 99999999999999885 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCccccCCC
Q 046257 820 DTNRFHHFKEGLCSCGD 836 (838)
Q Consensus 820 d~~~~h~~~~g~csc~~ 836 (838)
|++|||||+||+|||||
T Consensus 841 d~~rfh~f~~g~csc~d 857 (857)
T PLN03077 841 DTEQFHHFKDGECSCGD 857 (857)
T ss_pred cCCcceeCCCCcccCCC
Confidence 99999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-124 Score=1097.01 Aligned_cols=595 Identities=36% Similarity=0.661 Sum_probs=586.2
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHH
Q 046257 242 DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTG 320 (838)
Q Consensus 242 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 320 (838)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999998765 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh--
Q 046257 321 LMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF-- 398 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-- 398 (838)
|+++|+++|++++|.++|++|+ .||+++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|+..+..
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999999999887
Q ss_pred --HHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 399 --QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046257 477 PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGY 556 (838)
Q Consensus 477 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 556 (838)
||..||++++.+|+.. +.++.|+++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|.+||+++||+||.+|
T Consensus 323 pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A 636 (838)
+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+|+|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHH--------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 046257 637 MDIINRMPFAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKK 702 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~--------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 702 (838)
.++|++||+.|+..+|++|+++|+ +++++|++..+|+.|+++|++.|+|++|.++++.|+++|++|
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999997 678999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCcccccCChHHHhhhhhhhhHHHHHHHHhcc
Q 046257 703 EAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHKEAILSQHSERLAIAFGLVA 782 (838)
Q Consensus 703 ~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~ 782 (838)
.||||||++++++|.|++||.+||+.++||.+|++|..+|++.||+||+.+++||+++++|+..+++||||||+|||||+
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecccccCcchhhHHHhhhhhcceEEEecCCcccccCCccccCCCCC
Q 046257 783 TPAGAPLQIVKNLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCSCGDYW 838 (838)
Q Consensus 783 ~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~~~~rd~~~~h~~~~g~csc~~~~ 838 (838)
||||.||||+||||||+|||+|+||||++++|||||||++|||||+||+|||||||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-86 Score=792.45 Aligned_cols=585 Identities=29% Similarity=0.458 Sum_probs=570.2
Q ss_pred chhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh
Q 046257 28 SKKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS 107 (838)
Q Consensus 28 ~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 107 (838)
.+.|+++|++|+.||+++||.+|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++++|..+.+.
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 108 GFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 108 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
|+.||+.++|+||.+|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 046257 188 VLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFET 267 (838)
Q Consensus 188 ~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l 267 (838)
+|++.|+++.|+++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCe
Q 046257 268 FNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDV 347 (838)
Q Consensus 268 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 347 (838)
|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++++||++|+++|++++|.++|++|. .+|+
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~ 455 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDV 455 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccCCcchhhHHHHHH
Q 046257 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKSFSVGTALLNAY 423 (838)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~Li~~y 423 (838)
++||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.+.+ ++|..+++.|+.++..++|+|+++|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999985 6999999999999999999988 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 424 VKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 424 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
+|+|++++|.++|+.+ .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++. |.+++|.+++
T Consensus 535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-g~v~ea~~~f 612 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS-GMVTQGLEYF 612 (857)
T ss_pred HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc-ChHHHHHHHH
Confidence 9999999999999999 8999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHH-HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 504 ACSI-KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 504 ~~~~-~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
..|. +.|+.|+..+|++++++|+++|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCC
Confidence 9998 78999999999999999999999999999999997 99999999999999999999999999999988 67875
Q ss_pred -hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCch
Q 046257 582 -ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 582 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
..|..+.+.|+..|+++++.++.+.|+ +.|+++++..
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~-~~g~~k~~g~ 728 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVARVRKTMR-ENGLTVDPGC 728 (857)
T ss_pred cchHHHHHHHHHHCCChHHHHHHHHHHH-HcCCCCCCCc
Confidence 557777789999999999999999997 6699887753
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.9e-69 Score=630.01 Aligned_cols=476 Identities=25% Similarity=0.412 Sum_probs=429.1
Q ss_pred CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHH
Q 046257 39 PQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLG-LPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVST 117 (838)
Q Consensus 39 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 117 (838)
..++.++|+++|.+|.+.|++.+|+++|+.|...+ +.||..+|+.++.+|++.++++.+.++|..+.+.|+.||+.++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVAT 197 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 197 (838)
.|+.+|+++|++++|+++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCC
Q 046257 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAE 277 (838)
Q Consensus 198 a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (838)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHH
Q 046257 278 LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGH 357 (838)
Q Consensus 278 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~ 357 (838)
||..||++++.+|++.|+++.|+++|+.|.+.|+.+|..++++||++|+++|++++|.++|++|. .+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~------------ 389 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RK------------ 389 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CC------------
Confidence 99999999999999999999999999999999988887777777777777777776666666666 44
Q ss_pred HHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHH
Q 046257 358 LQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFE 437 (838)
Q Consensus 358 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 437 (838)
T Consensus 390 -------------------------------------------------------------------------------- 389 (697)
T PLN03081 390 -------------------------------------------------------------------------------- 389 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHH-hcCCCchh
Q 046257 438 LIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIK-AKLNNALC 516 (838)
Q Consensus 438 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 516 (838)
|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|.+|++. |.+++|.+++..|.+ .|+.|+..
T Consensus 390 -----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 390 -----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS-GLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred -----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcCCCCCcc
Confidence 44455555555666666666666666666667777777777777777777 777777777777764 57888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHA 594 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 594 (838)
+|++++++|+++|++++|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 88889999999999999999999997 78999999999999999999999999999976 6776 56899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccCC
Q 046257 595 GLVDEGQQYFDIMVNEHHIYPT 616 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p~ 616 (838)
|++++|.++++.|. +.|+...
T Consensus 542 G~~~~A~~v~~~m~-~~g~~k~ 562 (697)
T PLN03081 542 GRQAEAAKVVETLK-RKGLSMH 562 (697)
T ss_pred CCHHHHHHHHHHHH-HcCCccC
Confidence 99999999999997 5577543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-67 Score=617.39 Aligned_cols=530 Identities=15% Similarity=0.184 Sum_probs=474.3
Q ss_pred CCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHH
Q 046257 74 LPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGF-ARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLS 152 (838)
Q Consensus 74 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 152 (838)
..++...|..++..|.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 355667788888889899999999999999998885 4677788889999999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhH
Q 046257 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRD 232 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 232 (838)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----CCcchHHHHHHHHHhCCChHHHHHHHHHhhh--CCCCCChhhHHHHHHHHhccCcHHHHHHHHHHH
Q 046257 233 ARAVFDGMED----RDSITWNSMVAGYVTNELHMEAFETFNNMGL--AGAELTRSTFVSVIKLCATTKELRLARQLHSQV 306 (838)
Q Consensus 233 A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 306 (838)
|.++|++|.+ ||.++||+||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999963 7899999999999999999999999999976 578999999999999999999999999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc---CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcc
Q 046257 307 LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE---MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGF 383 (838)
Q Consensus 307 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 383 (838)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999975 5788999999999999999999999999999999999888
Q ss_pred cHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCC
Q 046257 384 TYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELID----EKDIVAWSAMLAGYAQIGD 459 (838)
Q Consensus 384 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 459 (838)
+| ++||++|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 686 ty-------------------------------nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 686 SY-------------------------------SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HH-------------------------------HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 88 578999999999999999999995 5899999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH----HhcCCHHHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY----SKKGNIESAS 535 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y----~k~g~~~~A~ 535 (838)
+++|+++|++|...|+.||..||++++.+|++. +.++.|.++|..+.+.|+.||..++++|+++| .++++..++.
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~-G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERK-DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999 99999999999999999999999999999874 4455554444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC
Q 046257 536 EVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP 615 (838)
Q Consensus 536 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 615 (838)
..|+.+...+...|+ ++|+.+|++|++.|+.||.+||+.+|.+++..+..+.+..+++.|. ..+..|
T Consensus 814 ~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~ 880 (1060)
T PLN03218 814 VSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQ 880 (1060)
T ss_pred hhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCc
Confidence 455444444444454 5699999999999999999999999977778888888888887775 446677
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHH
Q 046257 616 TMEHYSCMVDLYSRAGMLEKAMDIINRM---PFAASAT 650 (838)
Q Consensus 616 ~~~~y~~lv~~l~r~G~~~~A~~~~~~m---~~~~~~~ 650 (838)
+..+|+++++.+++. .++|..++++| .+.|+..
T Consensus 881 ~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 788999999998542 46899999998 3556643
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.3e-64 Score=588.24 Aligned_cols=546 Identities=17% Similarity=0.275 Sum_probs=414.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcc-----hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH
Q 046257 110 ARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVV-----SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST 184 (838)
Q Consensus 110 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 184 (838)
.++...|..++..++++|++++|.++|++|++++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 466778889999999999999999999999886655 455677789999999999999999974 99999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC----CCCcchHHHHHHHHHhCCC
Q 046257 185 VLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME----DRDSITWNSMVAGYVTNEL 260 (838)
Q Consensus 185 ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~n~li~~~~~~g~ 260 (838)
+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4799999999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 261 HMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLK--NGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 678999999999999999999999999999
Q ss_pred Hhccc---CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcch
Q 046257 339 SMMRE---MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSV 415 (838)
Q Consensus 339 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (838)
+.|.+ .++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn----------------------------- 653 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS----------------------------- 653 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-----------------------------
Confidence 99975 4677899999999999999999999999999999888877773
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDE----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
+|+++|++.|++++|.++|+.|.+ +|..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++
T Consensus 654 --sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~------- 724 (1060)
T PLN03218 654 --ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA------- 724 (1060)
T ss_pred --HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-------
Confidence 455555555555555555555542 3445555555555555555555555555555555555555555
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
||++|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.+
T Consensus 725 -----------------------------LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 725 -----------------------------LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred -----------------------------HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555555555555543 3455555555555555555555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHhc-----------------------cCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 568 VFKEMRRQDLEFDGITFIGVITACTH-----------------------AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 568 l~~~m~~~g~~pd~~t~~~ll~a~~~-----------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
+|++|.+.|+.||..+|++++..|.+ .+..++|..+|++|+ +.|+.|+..+|+.++
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCCCCHHHHHHHH
Confidence 55555555555555555555544321 233578999999998 669999999999999
Q ss_pred HHHHhcCCHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCc-hHHHHHHHHHhhCCC
Q 046257 625 DLYSRAGMLEKAMDIINRMPF---AASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHW-QERARVRKLMNDRKV 700 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~---~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~-~~a~~~~~~m~~~g~ 700 (838)
..+.+.+..+.+..+++.|.. .|+..+|++|+.+ + |++ ++|..++++|.+.|+
T Consensus 855 ~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g--------------------~---~~~~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 855 GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDG--------------------F---GEYDPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHh--------------------h---ccChHHHHHHHHHHHHcCC
Confidence 999999999999999998843 3445555555544 4 333 589999999999999
Q ss_pred ccCCceeEEEECCEEEEEeeCCCCCCChHH--HHHHHHHHHHHHHHcC-ccCCCCccccc
Q 046257 701 KKEAGYSWIEVKNKTYSFLAGDISHPQSNQ--IYSKLEELSTRLKDAG-YKPDTSYVLQD 757 (838)
Q Consensus 701 ~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~--i~~~l~~l~~~~~~~g-~~~~~~~~~~~ 757 (838)
.+.....-..+--.+++|- +...+ +...|..|...+. .| ..|.....++.
T Consensus 912 ~p~~~~~~~~~~~d~~~~~------~~aa~~~l~~wl~~~~~~~~-~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 912 VPSVSFKKSPIVIDAEELP------VFAAEVYLLTILKGLKHRLA-AGAKLPNVTILLPT 964 (1060)
T ss_pred CCCcccccCceEEEcccCc------chhHHHHHHHHHHHHHHHHh-ccCcCCcceeeecc
Confidence 8765421112222333332 23333 3445556655553 45 45554444554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-32 Score=333.60 Aligned_cols=655 Identities=12% Similarity=0.010 Sum_probs=352.4
Q ss_pred CchhhHHhhccCC---CCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHH
Q 046257 27 YSKKDQSLFDRSP---QRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCE 103 (838)
Q Consensus 27 ~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 103 (838)
..++|...|+... ..+...|..++..+...|++++|...++++.+.. +.+...+......+...|+++.|...+..
T Consensus 208 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 286 (899)
T TIGR02917 208 NIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQD 286 (899)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3456766666542 2345567777777777788888887777776653 22222222222333455666666666666
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh
Q 046257 104 CVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSF 180 (838)
Q Consensus 104 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 180 (838)
+.+.+.. +...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|...++.+.... +.+..
T Consensus 287 ~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 364 (899)
T TIGR02917 287 ALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPA 364 (899)
T ss_pred HHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 6554422 122223334445556666666666655432 233445555556666666666666666655433 22444
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 046257 181 TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR---DSITWNSMVAGYVT 257 (838)
Q Consensus 181 t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~n~li~~~~~ 257 (838)
.+..+...+...|++++|.+++..+.+.. +.+...+..+...+...|+.++|.+.|+.+.+. +...+..++..+.+
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 55555556666666666666666655543 234445555555566666666666666554331 22334445555556
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKI 337 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 337 (838)
.|++++|.++++++... .+++..++..+...+...|++++|.+.+..+++.. +.+...+..+...+...|++++|.+.
T Consensus 444 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666555442 22334455555555555566666666665555443 23344455555555556666666665
Q ss_pred HHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccC
Q 046257 338 FSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEK 411 (838)
Q Consensus 338 f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~ 411 (838)
|+.+.. +.+..+++.+...+.+.|+.++|..+|+++...+ ..+...+..+...+...++. .....+.+ ..+.
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~ 599 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD-AAPD 599 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCC
Confidence 555532 2234445555555555566666666665554432 11223333444444444444 11111111 1223
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
+..++..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555555666666666666666655432 233455555555666666666666665555421 1223444444444
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKAL 566 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 566 (838)
+... +..+.+..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..|.+.|+.++|.
T Consensus 679 ~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAA-KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHc-CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHH
Confidence 4444 55555655555555443 2344445555555556666666666655543 333344555555555666666666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 046257 567 EVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PF 645 (838)
Q Consensus 567 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~ 645 (838)
+.++++.+.. +.+...+..+...|...|+.++|.++|+.+.+.. +++...+..+..++.+.|+ ++|++.++++ ..
T Consensus 757 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 757 KTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 6666555531 2233445555555555566666666665555321 2234455555555555555 5555555543 12
Q ss_pred CCC-HHHHHHHHHHHH--------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 646 AAS-ATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 646 ~~~-~~~w~~ll~~c~--------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.|+ ...|..+-..+. .++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222 222322222211 478899999999999999999999999999999885
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-31 Score=325.51 Aligned_cols=656 Identities=12% Similarity=0.029 Sum_probs=309.3
Q ss_pred hhhHHhhccCCC----CCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHH
Q 046257 29 KKDQSLFDRSPQ----RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCEC 104 (838)
Q Consensus 29 ~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 104 (838)
++|..+|..... .....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..++..+
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555544431 122334445555555666666666666555433 223344555555555555666666665555
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh
Q 046257 105 VKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT 181 (838)
Q Consensus 105 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 181 (838)
++.. +.+...+..+...+...|++++|...|+...+ .+..+|..++..+...|++++|...++.+.+.... +...
T Consensus 186 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 263 (899)
T TIGR02917 186 LTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLA 263 (899)
T ss_pred HHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchH
Confidence 5432 23444555555555555666666665555432 23345555555555555555555555555443211 1111
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhC
Q 046257 182 FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTN 258 (838)
Q Consensus 182 ~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~ 258 (838)
+......+...|++++|...+..+++.+. .+...+..+...+...|++++|...|+...+ .+...+..+...+...
T Consensus 264 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 342 (899)
T TIGR02917 264 HYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL 342 (899)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 11222222344455555555555444431 1122222233334444555555544444322 1223344444444444
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 259 ELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
|++++|...+.++.... ..+...+..+...+.+.|++++|.++++.+.+.. +.+...+..+...+...|+.++|.+.|
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 55555544444444321 1223334444444444444555544444444432 123334444444444444444444444
Q ss_pred Hhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh----HHHHHHHHhhccCC
Q 046257 339 SMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF----QVHAHIIKTNYEKS 412 (838)
Q Consensus 339 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~~~~~~~~~~~~~ 412 (838)
+.+.. ..+...+..++..+.+.|++++|+.+++++... ..++..++..+...+...++. +.+...++. .+.+
T Consensus 421 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~ 498 (899)
T TIGR02917 421 ETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-EPDF 498 (899)
T ss_pred HHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh-CCCc
Confidence 44331 111222333444444444444444444444432 112233333333333333333 111111111 1112
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHh
Q 046257 413 FSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINAC 489 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 489 (838)
...+..+...+.+.|++++|.+.|+.+.+ .+..++..+...|.+.|+.++|...|.++...+ ..+...+..+...+
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 23334444555555555555555554432 233445555555555555555555555554321 12223333444444
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHH
Q 046257 490 TAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKAL 566 (838)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 566 (838)
... +..+.+..++..+.+.. +.+...+..+...|.+.|++++|...|+++. +.+...|..+...|.+.|++++|+
T Consensus 578 ~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGK-GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHC-CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 444 55555555555444322 2334445555555555555555555555443 223444555555555555555555
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 046257 567 EVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-P 644 (838)
Q Consensus 567 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~ 644 (838)
+.|+++.+ ..|+ ..++..+...+...|++++|.++++.+.+.. .++...+..+...+.+.|++++|.+.++++ .
T Consensus 656 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 656 TSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555554 2333 3444455555555555555555555554221 223334444555555555555555555543 1
Q ss_pred CCCCHHHHHHHHHHHH--------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 645 FAASATVWRTVLAACR--------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~--------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
..|+..++..+...+. .++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 2333333333322221 367789899999999999999999999999999987643
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=5.4e-36 Score=257.64 Aligned_cols=106 Identities=65% Similarity=1.094 Sum_probs=99.3
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCccCCCCcccccCChHHH--------hhhhhhhhHHHHH
Q 046257 705 GYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYKPDTSYVLQDIDDEHK--------EAILSQHSERLAI 776 (838)
Q Consensus 705 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~e~~a~ 776 (838)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999988 9999999999998 566778889999999999998888766 5689999999999
Q ss_pred HHHhccCCCCCcEEEEecc-cccCcchhhHHHhhhhhcceEEEecCCcccccC
Q 046257 777 AFGLVATPAGAPLQIVKNL-RVCGDCHTVIKLISKLERRDIVVRDTNRFHHFK 828 (838)
Q Consensus 777 ~~~~~~~~~~~~~~~~~n~-~~c~~ch~~~k~~s~~~~r~~~~rd~~~~h~~~ 828 (838)
||||+++ ||+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1.4e-22 Score=249.47 Aligned_cols=623 Identities=12% Similarity=0.017 Sum_probs=421.3
Q ss_pred CCCCchhhHHhhccCC--CC-CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCccc----------------HHHH
Q 046257 24 SPFYSKKDQSLFDRSP--QR-NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGST----------------LSSV 84 (838)
Q Consensus 24 ~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~----------------~~~l 84 (838)
.....+.|+..+++.. .| +...+..++..+.+.|+.++|...++++.+.. |.+... ....
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 3455567777777652 23 55667888888899999999999999998765 222222 1223
Q ss_pred HHHhccCCChhhHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCc
Q 046257 85 LKTCGCLFDHVFGRQVHCECVKSGFARDVNV-STSLVDLYMRTNNVEDGRRVFDDMNE--S-NVVSWTSLLSGYARNKMN 160 (838)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 160 (838)
.+.+...|+.++|.+.+..+++... ++... ...+.......|+.++|++.|+.+.+ | +...+..+...+...|+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence 3456788999999999998876543 33221 11112222345899999999998875 3 445788888899999999
Q ss_pred hHHHHHHHHHHHCCCC----------------CChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046257 161 DRVLELFHRMQVEGIK----------------PNSF---TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALI 221 (838)
Q Consensus 161 ~~A~~l~~~m~~~g~~----------------p~~~---t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li 221 (838)
++|+..|+++.+.... ++.. .+...+..+-.......+...+....+....|+.. ...+.
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G 276 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQG 276 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHH
Confidence 9999999998653210 0000 11111112222223344445554444332223221 22345
Q ss_pred HHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCC-Chhh---------HH---H
Q 046257 222 SMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAEL-TRST---------FV---S 285 (838)
Q Consensus 222 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t---------~~---~ 285 (838)
..+...|++++|+..|++..+ .+...+..+...|.+.|++++|++.|++..+..... +... |. .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 567778999999999987654 366778888889999999999999999887653211 1111 11 1
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCCh
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAI 363 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~ 363 (838)
.-..+.+.|++++|...++++++.. +.+...+..|...|...|++++|.+.|++... ..+...+..+...|. .++.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCH
Confidence 2335667889999999999988875 34566777788899999999999999988763 223445666666664 4577
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-
Q 046257 364 DLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK- 442 (838)
Q Consensus 364 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~- 442 (838)
++|+.+++.+.... +.. ...... .+ ....+..+...+...|++++|.+.|++..+.
T Consensus 435 ~~A~~~l~~l~~~~--~~~--~~~~~~-----------------~l--~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 435 EKALAFIASLSASQ--RRS--IDDIER-----------------SL--QNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred HHHHHHHHhCCHHH--HHH--HHHHHH-----------------Hh--hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888887664431 100 000000 00 0112345677888999999999999987643
Q ss_pred --CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhh-HHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch----
Q 046257 443 --DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT-FSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL---- 515 (838)
Q Consensus 443 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 515 (838)
+...+..+...|.+.|++++|+..|+++.+. .|+... +..+....... +..+.+...+..+......++.
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~-~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS-DRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC-CCHHHHHHHHHhCCchhcChhHHHHH
Confidence 4456778889999999999999999998763 344322 22221222334 6777777766554332222111
Q ss_pred -----hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 516 -----CVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 516 -----~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
.....+.+.|...|+.++|.++++. .+.+...+..+...|.+.|+.++|++.|++..+ ..|+ ...+..+..
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~ 645 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIE 645 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 1223456778899999999999984 344666778899999999999999999999999 5676 567888999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
.+...|+.++|.+.++...+ ..|+ ...+..+..++.+.|++++|.++++++ ++..|++
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a------------------l~~~~~~ 704 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRL------------------IPQAKSQ 704 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH------------------hhhCccC
Confidence 99999999999999998763 3443 455677888999999999999999987 3444433
Q ss_pred c------hhHHHHHHHHHhcCCchHHHHHHHHHh-hCCCc
Q 046257 669 S------AIYVLLSNMYAATGHWQERARVRKLMN-DRKVK 701 (838)
Q Consensus 669 ~------~~y~~l~~~y~~~g~~~~a~~~~~~m~-~~g~~ 701 (838)
+ ..+..++.+|...|++++|...++... ..|+.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 3 356677999999999999999988774 33443
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.9e-20 Score=229.24 Aligned_cols=583 Identities=10% Similarity=0.022 Sum_probs=421.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhH-------------
Q 046257 49 LLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNV------------- 115 (838)
Q Consensus 49 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------- 115 (838)
..+.....++.+.|...++++.... +.++..+..+...+...|+.++|.+.++.+.+..+. +...
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 3455668899999999999988653 446677888888899999999999999999887643 2222
Q ss_pred ---HHHHHHHHHhCCChHHHHHHHccCCCCC--cchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046257 116 ---STSLVDLYMRTNNVEDGRRVFDDMNESN--VVSWT--SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGV 188 (838)
Q Consensus 116 ---~~~li~~y~~~g~~~~A~~~f~~m~~~~--~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 188 (838)
...+...+.+.|++++|.+.|+...+.+ ..... .........|++++|++.|+++.+... -+...+..+...
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1233446888999999999999876532 22111 111222346899999999999988642 245567788888
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCC-------------------chhHHHHHHHHhHcCCChhHHHHHHhcCCC--CCcc-
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEV-------------------VTSVCNALISMYLKSKMVRDARAVFDGMED--RDSI- 246 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~-------------------~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~- 246 (838)
+...|+.++|.+.++.+.+..... ....+...+..+-.....+.|...+..... .|..
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 889999999999999987642110 001111222222222334455555544322 1111
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCh-hHH------
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAEL-TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDH-NIR------ 318 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~------ 318 (838)
........+...|++++|+..|++..+. .| +...+..+..++.+.|++++|...++..++....... ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1123356677899999999999998875 34 5667888888999999999999999999887543221 111
Q ss_pred ------HHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHh
Q 046257 319 ------TGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390 (838)
Q Consensus 319 ------~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 390 (838)
..+...+.+.|++++|...|++... +.+...+..+...+...|++++|++.|++..+. .|+....
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a----- 421 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNA----- 421 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH-----
Confidence 2234567789999999999998864 335566777888999999999999999998874 3433211
Q ss_pred hCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC------------cchHHHHHHHHHhcC
Q 046257 391 AQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD------------IVAWSAMLAGYAQIG 458 (838)
Q Consensus 391 a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g 458 (838)
...+...|. .++.++|...++.+.... ...+..+...+...|
T Consensus 422 -------------------------~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 422 -------------------------VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred -------------------------HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 123445553 457888988887765321 224556778888999
Q ss_pred CchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 046257 459 DTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEV 537 (838)
Q Consensus 459 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 537 (838)
++++|++.|++..+. .|+. ..+..+...+... +..+.+...+..+++... .+.....++.-.+.+.|+.++|...
T Consensus 476 ~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~-G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 476 KWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA-GQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999874 5654 3445555666677 999999999999887543 3444455555567889999999999
Q ss_pred HHhcCCC----CHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHH
Q 046257 538 FKRQRKR----DLV---------SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 538 f~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
++.+... +.. .+..+...+...|+.++|+++++. ..++...+..+...+...|+.++|...|
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 9988632 111 123456778899999999999872 2334556777888899999999999999
Q ss_pred HHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 605 DIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 605 ~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
+...+. .| +...+..++.+|...|++++|++.+++. ++..|+++..+..++.+|...|
T Consensus 627 ~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l------------------l~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 627 QRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKL------------------PATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------hccCCCChHHHHHHHHHHHhCC
Confidence 999843 45 4677888999999999999999999977 5678889999999999999999
Q ss_pred CchHHHHHHHHHhhCC
Q 046257 684 HWQERARVRKLMNDRK 699 (838)
Q Consensus 684 ~~~~a~~~~~~m~~~g 699 (838)
++++|.++++.+....
T Consensus 686 ~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CHHHHHHHHHHHhhhC
Confidence 9999999999987643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.5e-19 Score=212.41 Aligned_cols=599 Identities=11% Similarity=0.013 Sum_probs=329.3
Q ss_pred cHHHHHHHHH--ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 046257 45 EYNRLLFEYC--RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDL 122 (838)
Q Consensus 45 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 122 (838)
++..+..++. ..|++++|+..|++..+.. |-+..++..+.+++...|+.++|....+..++... .|...+..| .
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a- 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-A- 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-H-
Confidence 4444554433 4599999999999998765 44567788899999999999999999988887653 455555544 2
Q ss_pred HHhCCChHHHHHHHccCCC--CC-cchHHHHHHH--------HHhCCCchHHHHHHHHHHHCCCCCChhhHHHH-HHHHh
Q 046257 123 YMRTNNVEDGRRVFDDMNE--SN-VVSWTSLLSG--------YARNKMNDRVLELFHRMQVEGIKPNSFTFSTV-LGVLA 190 (838)
Q Consensus 123 y~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~ 190 (838)
..++.++|..+++++.. |+ ...+..+... |.+. ++|.+.++ .......|+..+.... .+.+.
T Consensus 120 --~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~ 193 (987)
T PRK09782 120 --AIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAI 193 (987)
T ss_pred --HhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHH
Confidence 22889999999999864 33 3344444443 6665 44554444 4333344555555555 88999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc-CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 046257 191 DEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK-SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFN 269 (838)
Q Consensus 191 ~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~ 269 (838)
..++++++..++..+.+.+ +.+......|-.+|.. .++ +.|..++....+.|...+..+...|.+.|+.++|.++++
T Consensus 194 ~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 194 YLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999997 4455556777778887 467 888888776555688899999999999999999999999
Q ss_pred HhhhCCCC-CChhhHHHHHHHHh------------------------------ccCcHHHHHHHHHHHHHhCCCCChhHH
Q 046257 270 NMGLAGAE-LTRSTFVSVIKLCA------------------------------TTKELRLARQLHSQVLKNGIDFDHNIR 318 (838)
Q Consensus 270 ~m~~~g~~-p~~~t~~~ll~~~~------------------------------~~~~~~~a~~~~~~~~~~g~~~~~~~~ 318 (838)
++...-.. |...++.-++.-.. +.++++.++++. .+.|....
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~- 344 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM- 344 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH-
Confidence 98655322 54444443332221 222222111110 11222221
Q ss_pred HHHHHHHH-cCCChHHHHHHHHhcccC--CCeeehHHHHHHHHHcCChHHHHHHHHHhhhc-C-CCCCcccHHHHHhhCC
Q 046257 319 TGLMVAYS-KCGKMEDASKIFSMMREM--KDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE-G-VRPNGFTYSIILTAQP 393 (838)
Q Consensus 319 ~~Li~~y~-~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~ 393 (838)
..+-.++. ..+...++.+....|-.. .+....--+--...++|+.++|..+|++.... + ..++.....-+...+.
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 11111111 113333333333333211 12222222233345667777777777776552 1 1111111112233332
Q ss_pred CCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHH---HHHHHHHhcCC---C--CcchHHHHHHHHHhcCCchHHHH
Q 046257 394 AVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILD---EAAKVFELIDE---K--DIVAWSAMLAGYAQIGDTEGAVK 465 (838)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~ 465 (838)
..+.+.-...+...+-..+.... ..-.|+.. .+...+..... . +...|..+...+.. +++++|+.
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~ 497 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALY 497 (987)
T ss_pred hCCcccchHHHHHhccccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHH
Confidence 22221000000000000000000 00011111 11111111111 1 33455555555554 56666666
Q ss_pred HHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 046257 466 IYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRD 545 (838)
Q Consensus 466 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~ 545 (838)
.|.+.... .|+......+..++... +..+.+...+..+... +++...+..+...+.+.|++++|...|++....+
T Consensus 498 a~~~Al~~--~Pd~~~~L~lA~al~~~-Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 498 AWLQAEQR--QPDAWQHRAVAYQAYQV-EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHh--CCchHHHHHHHHHHHHC-CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555442 34443322222222334 6666666666554333 2222333444555666666666666666554222
Q ss_pred HH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHH
Q 046257 546 LV---SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYS 621 (838)
Q Consensus 546 ~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 621 (838)
.. .+..+.......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...++.... +.|+ ...+.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~ 647 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQA 647 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 21 122222223334667777777766666 456655666666666666777777776666652 2343 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 622 CMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+...|...|++++|++.+++. ++++|+++.++..++.+|...|+.++|...+++..+
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~A------------------L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERA------------------HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666667777776666665 566666777777777777777777777766666654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=4.8e-18 Score=199.84 Aligned_cols=610 Identities=10% Similarity=-0.026 Sum_probs=422.3
Q ss_pred hhHHhhccCC--CC-CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHH
Q 046257 30 KDQSLFDRSP--QR-NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVK 106 (838)
Q Consensus 30 ~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 106 (838)
.|...|...- .| +...+..|...|...|++++|+..+++..+. .|+...|..++... ++...|..+++++.+
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~ 136 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLA 136 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHH
Confidence 5666666542 23 4667888999999999999999999998875 34544454444333 888899999999988
Q ss_pred hCCCCChhHHHHHHHH--------HHhCCChHHHHHHHccCCCCC--cchHH-HHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046257 107 SGFARDVNVSTSLVDL--------YMRTNNVEDGRRVFDDMNESN--VVSWT-SLLSGYARNKMNDRVLELFHRMQVEGI 175 (838)
Q Consensus 107 ~g~~~~~~~~~~li~~--------y~~~g~~~~A~~~f~~m~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~ 175 (838)
..+ .+..++..+... |.+.+....|.+ .....|+ ..+.. .+...|.+.|++++|++++.++.+.++
T Consensus 137 ~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 137 QQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred hCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 763 445555555555 787766667776 3333343 44344 448999999999999999999999864
Q ss_pred CCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC-----CCcchHH
Q 046257 176 KPNSFTFSTVLGVLAD-EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED-----RDSITWN 249 (838)
Q Consensus 176 ~p~~~t~~~ll~~~~~-~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~n 249 (838)
. +..-...+-.++.. .++ +.+..++.. .+..+..+..++...|.+.|+.++|.+++.+++. ++..+|-
T Consensus 214 l-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 214 L-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred C-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 3 33335556566666 355 667777543 3346888999999999999999999999998874 2222221
Q ss_pred H------------------------------HHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh--ccCcHH
Q 046257 250 S------------------------------MVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCA--TTKELR 297 (838)
Q Consensus 250 ~------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~ 297 (838)
- .+..+.+.+.++-+.++. ...|.... ..++... ..+...
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchh
Confidence 1 244556666666555441 13444333 2333332 336666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCe----eehHHHHHHHHHcCC---hHHHHHH
Q 046257 298 LARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDV----VSWTAMISGHLQNGA---IDLAVNF 369 (838)
Q Consensus 298 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~----~~~~~li~~~~~~g~---~~~A~~l 369 (838)
++.+.+..+.+.. +-+....--+.-...+.|+.++|.++|...-. .++. ..-+-++..|.+.+. ..+++.+
T Consensus 360 ~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 7777777776653 33555555556667789999999999998874 2222 234567788888877 4444444
Q ss_pred HHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhc---cC--CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc
Q 046257 370 FCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNY---EK--SFSVGTALLNAYVKKGILDEAAKVFELIDEKDI 444 (838)
Q Consensus 370 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~---~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 444 (838)
-..+-. .+-..++...... +-........+ ++ +...+..+...+.. ++.++|...|.+......
T Consensus 439 ~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P 507 (987)
T PRK09782 439 SKPLPL-------AEQRQWQSQLPGI---ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP 507 (987)
T ss_pred cccccc-------chhHHHHhhhhhh---hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC
Confidence 322211 1111111111100 00011111111 12 44556667777766 889999997777655434
Q ss_pred chHHHHHHHH--HhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 445 VAWSAMLAGY--AQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 445 ~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
..|+.+..++ .+.|++++|...|+++... .|+...+..+..++... ++.+.+...+...++.. +.+...+..+.
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 4566655555 5899999999999998653 45544555555556666 89999999999888765 22333333343
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDE 599 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~ 599 (838)
....+.|++++|...|++.. .|+...|..+...+.+.|+.++|++.|++..+ ..|+. ..+..+..++...|+.++
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 44445699999999999887 57788999999999999999999999999999 67875 466777778999999999
Q ss_pred HHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
|...++...+ +.| +...+..+..++.+.|++++|+..+++. ++++|++..+....+++
T Consensus 662 Ai~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A------------------l~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 662 SREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLV------------------IDDIDNQALITPLTPEQ 720 (987)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HhcCCCCchhhhhhhHH
Confidence 9999999884 345 4567888999999999999999999987 78999999999999999
Q ss_pred HHhcCCchHHHHHHHHHhhCCC
Q 046257 679 YAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 679 y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
.....+++.|.+-++..-.-.+
T Consensus 721 ~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 721 NQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHHHHHhhcCc
Confidence 9999999999887776654433
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=4.1e-17 Score=169.67 Aligned_cols=444 Identities=17% Similarity=0.201 Sum_probs=297.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC
Q 046257 148 TSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKS 227 (838)
Q Consensus 148 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 227 (838)
..|..-..+.|++.+|.+.-...-+++ ..+..+...+-..+....+++...+--...++.. +.-..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 444555567788888877554433322 1222233333333444444444333333333322 23345566666666666
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 046257 228 KMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHS 304 (838)
Q Consensus 228 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 304 (838)
|++++|...+..+.+ ..+..|-.+..++...|+.+.|.+.|.+..+ +.|+.+...+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s------------------- 188 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARS------------------- 188 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhc-------------------
Confidence 666666666665543 2345566666666666666666666655543 2333332211
Q ss_pred HHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CC-CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCc
Q 046257 305 QVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MK-DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNG 382 (838)
Q Consensus 305 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 382 (838)
-+-......|++.+|...+.+..+ .| =.+.|+.|...+-.+|+...|+..|++... +.|+.
T Consensus 189 ---------------~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f 251 (966)
T KOG4626|consen 189 ---------------DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNF 251 (966)
T ss_pred ---------------chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcc
Confidence 122222334555555555444332 22 235677777777777777777777777655 23331
Q ss_pred ccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC
Q 046257 383 FTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGD 459 (838)
Q Consensus 383 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 459 (838)
. ..|-.|...|...+.++.|...+..... ...+.+..|...|-..|.
T Consensus 252 ~------------------------------dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 252 L------------------------------DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGL 301 (966)
T ss_pred h------------------------------HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecccc
Confidence 1 1122455666666677777666654432 244566667777777888
Q ss_pred chHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVF 538 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f 538 (838)
.+-|+..|++..+ +.|+- ..|+.+-.|.... |++.+|...+...+.... ......+-|...|...|.+++|..+|
T Consensus 302 ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 302 LDLAIDTYKRALE--LQPNFPDAYNNLANALKDK-GSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred HHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHH
Confidence 8888888887776 45663 5677777777777 888888888777776542 34556677889999999999999999
Q ss_pred HhcC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc
Q 046257 539 KRQR--KRD-LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY 614 (838)
Q Consensus 539 ~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 614 (838)
.... .|+ ....|.|...|-++|+.++|+..|++.+. ++|+. ..|+.+...+-..|++++|.+.+...+ .+.
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~n 452 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QIN 452 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcC
Confidence 8776 333 45789999999999999999999999999 99994 689999999999999999999999888 466
Q ss_pred CCC-chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHH
Q 046257 615 PTM-EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQER 688 (838)
Q Consensus 615 p~~-~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a 688 (838)
|.. +..+.|..+|-.+|++.+|++-+++. +.++|+-+.+|..|.-.+.--..|.+-
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~a------------------LklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTA------------------LKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHH------------------HccCCCCchhhhHHHHHHHHHhcccch
Confidence 764 57888999999999999999999987 899999999999999888888888883
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=2.8e-18 Score=188.66 Aligned_cols=301 Identities=16% Similarity=0.182 Sum_probs=228.6
Q ss_pred HHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHH
Q 046257 323 VAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 323 ~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 400 (838)
..+...|++++|...|.++.+ +.+..+|..+...+.+.|++++|..+++.+...+..++....
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--------------- 107 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL--------------- 107 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH---------------
Confidence 345667788888888888763 223446777888888888888888888888764322111110
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC
Q 046257 401 HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP 477 (838)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 477 (838)
.++..+...|.+.|++++|..+|+.+.+ .+..+++.++..|.+.|++++|++.|+++.+.+..+
T Consensus 108 -------------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 108 -------------LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 1235678888899999999999988865 356688899999999999999999999987653222
Q ss_pred CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHH
Q 046257 478 NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMIC 554 (838)
Q Consensus 478 ~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~ 554 (838)
+.... ...+..+...|.+.|++++|.+.|+++. +.+...|..+..
T Consensus 175 ~~~~~--------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 222 (389)
T PRK11788 175 LRVEI--------------------------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD 222 (389)
T ss_pred chHHH--------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH
Confidence 11100 0123345667889999999999999876 335668888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCC
Q 046257 555 GYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 555 ~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~ 632 (838)
.|.+.|++++|+++|+++.+. .|+ ..++..+..++...|++++|.+.++.+.+. .|+...+..++.++.+.|+
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCC
Confidence 999999999999999999984 454 456788999999999999999999999843 5777778889999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh---cCCchHHHHHHHHHhhCCCccCCcee
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA---TGHWQERARVRKLMNDRKVKKEAGYS 707 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~~~s 707 (838)
+++|.++++++ ++..|++.. +..+...+.. .|+.+++..+++.|.++++++.|.+.
T Consensus 298 ~~~A~~~l~~~------------------l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 298 PEAAQALLREQ------------------LRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHHHH------------------HHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 99999999987 455665443 3333333432 56999999999999999999999744
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=3.6e-17 Score=179.84 Aligned_cols=296 Identities=14% Similarity=0.091 Sum_probs=179.9
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHcCCC
Q 046257 255 YVTNELHMEAFETFNNMGLAGAELT-RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFD---HNIRTGLMVAYSKCGK 330 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~ 330 (838)
+...|++++|++.|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44556666666666666654 232 33555566666666666666666666665432111 2456677778888888
Q ss_pred hHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhh
Q 046257 331 MEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTN 408 (838)
Q Consensus 331 ~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 408 (838)
+++|.++|+++.+ ..+..+++.++..+.+.|++++|.+.++++...+..++.....
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------------- 180 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIA---------------------- 180 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHH----------------------
Confidence 8888888888763 2455678888888888888888888888887654322211110
Q ss_pred ccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 409 YEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
..+..+...+.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|+++|+++...+ |+..
T Consensus 181 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~----- 248 (389)
T PRK11788 181 -----HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYL----- 248 (389)
T ss_pred -----HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhH-----
Confidence 01234666777888888888888876542 34567778888888888888888888887532 2211
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChH
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTK 563 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~ 563 (838)
..+++.++..|.+.|++++|.+.++++. .|+...++.++..+.+.|+++
T Consensus 249 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 249 -----------------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred -----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHH
Confidence 1122334445555666666666665543 344444455566666666666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCccCCCc
Q 046257 564 KALEVFKEMRRQDLEFDGITFIGVITACTH---AGLVDEGQQYFDIMVNEHHIYPTME 618 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~ 618 (838)
+|+++|+++.+ ..|+..++..++..+.. .|+.+++...++.|. +.++.|++.
T Consensus 300 ~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~p~ 354 (389)
T PRK11788 300 AAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV-GEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH-HHHHhCCCC
Confidence 66666666655 35665555555554432 335566666666665 334555554
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.4e-14 Score=159.29 Aligned_cols=621 Identities=14% Similarity=0.096 Sum_probs=401.8
Q ss_pred hhHHhhccCCCCCcccHHHHH---HHHHccCC--hHHHHHHHHHHHHcCCCCCcccHHHHHHHhc--cCCChhhHHHHHH
Q 046257 30 KDQSLFDRSPQRNFVEYNRLL---FEYCRDSL--HQEALNLFLGIRRLGLPLFGSTLSSVLKTCG--CLFDHVFGRQVHC 102 (838)
Q Consensus 30 ~a~~~f~~~~~~~~~~~~~li---~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~ 102 (838)
.|..+|+....-+...+..++ ..|...|. .+.|...|...++.. +++ ....+.+||. ..+++..+..+|.
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk 188 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYK 188 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHH
Confidence 455666654333333333222 12333443 478888888887653 222 3445666664 5568999999999
Q ss_pred HHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHH------hCCCchHHHHHHHHHHHCC
Q 046257 103 ECVKSG--FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYA------RNKMNDRVLELFHRMQVEG 174 (838)
Q Consensus 103 ~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~------~~g~~~~A~~l~~~m~~~g 174 (838)
.++... ..+|+.+. +-..+.++|+.+.|...|....+-|+..-++++.... ....+..++.++...-...
T Consensus 189 ~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n 266 (1018)
T KOG2002|consen 189 KALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN 266 (1018)
T ss_pred HHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc
Confidence 876654 34555543 3356678899999999999888766655555444321 1223445566665554332
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHcCCChhHHHHHHhcCCCC--C--cchH
Q 046257 175 IKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV--VTSVCNALISMYLKSKMVRDARAVFDGMEDR--D--SITW 248 (838)
Q Consensus 175 ~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~--~~~~ 248 (838)
.-|+...+.|.+-+.-.|++..+..+...++...... -...|--+..+|-..|+++.|...|.+..+. | +..+
T Consensus 267 -~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 267 -NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred -CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 2366777888888888999999999988888765211 1234666888999999999999999876542 2 3445
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHhccC----cHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGAELTR-STFVSVIKLCATTK----ELRLARQLHSQVLKNGIDFDHNIRTGLMV 323 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 323 (838)
--+...|...|+.+.+...|+..... .||. .|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 56788899999999999999988765 4544 45555555555543 4566777777766654 456777777777
Q ss_pred HHHcCCChH------HHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc---CCCCCcc-cHHHHHhhCC
Q 046257 324 AYSKCGKME------DASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE---GVRPNGF-TYSIILTAQP 393 (838)
Q Consensus 324 ~y~~~g~~~------~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~-t~~~ll~a~~ 393 (838)
+|-...-+. .|..++........+...|.+.......|.+++|...|.+.... -..+|.. +.
T Consensus 423 l~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~-------- 494 (1018)
T KOG2002|consen 423 LLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST-------- 494 (1018)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc--------
Confidence 776554432 33333333221455667899999999999999999999988764 2333432 11
Q ss_pred CCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHh-------cCCchHHHHH
Q 046257 394 AVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQ-------IGDTEGAVKI 466 (838)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~l 466 (838)
++.+.-.|...+-..++.+.|.+.+..+....+ ..|.+|.+ .+...+|..+
T Consensus 495 ------------------~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp----~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 495 ------------------NLTLKYNLARLLEELHDTEVAEEMYKSILKEHP----GYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred ------------------hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc----hhHHHHHHhhHHHHhccCcHHHHHH
Confidence 011112344455566777888888877765322 12333333 3566778888
Q ss_pred HHHhhcC-CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHH------------hcCCHH
Q 046257 467 YRQLTSE-GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAK-LNNALCVSSALVTMYS------------KKGNIE 532 (838)
Q Consensus 467 ~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~y~------------k~g~~~ 532 (838)
+++.... .-.|+..++..-+ +-.. .....++.-+..+.+.- -.+|+...-+|.+.|. ..+..+
T Consensus 553 lk~~l~~d~~np~arsl~G~~--~l~k-~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 553 LKDALNIDSSNPNARSLLGNL--HLKK-SEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHhcccCCcHHHHHHHHH--HHhh-hhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 8776552 3445555543211 1111 23333333333333321 1256666666666553 235678
Q ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 533 SASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 533 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.|.++|.++. ++|...-|.+...++..|++.+|..+|.+.++... -+.-+|..+...|...|++-.|.+.|+...+
T Consensus 630 KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 630 KALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998776 56888889999999999999999999999999753 3455788999999999999999999999888
Q ss_pred cCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHH----HhccCCCCchhHHHHHHHHHhc
Q 046257 610 EHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PFAAS--ATVWRTVLAACR----LISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 610 ~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~~--~~~w~~ll~~c~----~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
++.-.-+.+...+|..++.++|.+.+|.+..... ...|. .+.++..+-.-+ ++..++ ..+=.+....
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k------~t~eev~~a~ 782 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK------RTLEEVLEAV 782 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc------ccHHHHHHHH
Confidence 8876677889999999999999999999887654 12222 234444333322 333333 2233345566
Q ss_pred CCchHHHHHHHHHhhCC
Q 046257 683 GHWQERARVRKLMNDRK 699 (838)
Q Consensus 683 g~~~~a~~~~~~m~~~g 699 (838)
+..+.|.++|..|...+
T Consensus 783 ~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 783 KELEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77788888888887654
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.5e-14 Score=157.40 Aligned_cols=627 Identities=12% Similarity=0.088 Sum_probs=405.9
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCcccHHHHHHHhc-cCC------C-----hhhHHHHHH
Q 046257 41 RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLG------LPLFGSTLSSVLKTCG-CLF------D-----HVFGRQVHC 102 (838)
Q Consensus 41 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~ll~~~~-~~~------~-----~~~a~~~~~ 102 (838)
.....|..+...|...|..++.+.+++.-...+ +..+...-..++.+|- ..+ + ...+..+|.
T Consensus 39 a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~ 118 (1018)
T KOG2002|consen 39 APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFD 118 (1018)
T ss_pred CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhh
Confidence 345689999999999999999998887654111 1111111111222221 111 0 111222222
Q ss_pred HHHHhCCCCCh-hHHHHHHHHHHhCCC--hHHHHHHHccCCCCCcc-hHHHHHHHH--HhCCCchHHHHHHHHHHHC--C
Q 046257 103 ECVKSGFARDV-NVSTSLVDLYMRTNN--VEDGRRVFDDMNESNVV-SWTSLLSGY--ARNKMNDRVLELFHRMQVE--G 174 (838)
Q Consensus 103 ~~~~~g~~~~~-~~~~~li~~y~~~g~--~~~A~~~f~~m~~~~~~-~~~~li~~~--~~~g~~~~A~~l~~~m~~~--g 174 (838)
.+-+-....++ .++.. ..|...|+ ++.|...|....+.++. ..-.+.+++ ...|++..|+.+|...... .
T Consensus 119 ~A~ki~m~~~~~l~~~~--~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 119 LADKIDMYEDSHLLVQR--GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHHHhhccCcchhhhhh--hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 21111111111 11111 11223343 48898888887652221 122333333 4568999999999996543 3
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCC---ChhHHHHHHhcCC---CCCcchH
Q 046257 175 IKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSK---MVRDARAVFDGME---DRDSITW 248 (838)
Q Consensus 175 ~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~---~~~~~~~ 248 (838)
..||.. ..+-.++.+.++.+.|+..|.++++.. +.++.++-.|--.-.... .+..+..++...- ..|++..
T Consensus 197 ~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVR--IGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred cCCCcc--chhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 445543 233356678999999999999998875 222323222222222222 2344444444332 3588999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCC-C-CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGA-E-LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYS 326 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~-~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 326 (838)
|.|..-|.-.|++..++.+...+..... . .-...|-.+-+++-..|+++.|...|-+..+......+..+..|..+|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 9999999999999999999988876431 1 1223577888999999999999999988887653333445567889999
Q ss_pred cCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcC----ChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh--
Q 046257 327 KCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNG----AIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF-- 398 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-- 398 (838)
+.|+++.+...|+.+.. +.+..+.-.+...|+..+ ..+.|..++.+..+.- .-|...|..+-..+-.....
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH
Confidence 99999999999998864 234455556666677665 3455666655555432 22333443333332222211
Q ss_pred -----HHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-------Ccc------hHHHHHHHHHhcCCc
Q 046257 399 -----QVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK-------DIV------AWSAMLAGYAQIGDT 460 (838)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li~~~~~~g~~ 460 (838)
.....+...+-...+.+.|.+...+...|.+++|...|+..... |.. +--.+...+-..+++
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 23334455566688889999999999999999999999876532 221 122245555667899
Q ss_pred hHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 046257 461 EGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKR 540 (838)
Q Consensus 461 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 540 (838)
+.|.+.|..+.+. .|+-++-..=+.+.+...+.+..+...+..+.... ..++.+++-+.+.|.+...+..|.+-|..
T Consensus 513 ~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~ 589 (1018)
T KOG2002|consen 513 EVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFET 589 (1018)
T ss_pred hHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHH
Confidence 9999999999874 57766544444344444356666766666665533 45667777777789998888888886654
Q ss_pred cC-----CCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHH
Q 046257 541 QR-----KRDLVSWNSMICGYAQ------------HGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 541 ~~-----~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++ ..| |-..-+++.-.+++.|++.+|..
T Consensus 590 i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 590 ILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHH
Confidence 43 3466666666665542 2457899999999998 455 45677788888899999999999
Q ss_pred HHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc-CCCCchhHHHHHHHHHh
Q 046257 603 YFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL-QPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 603 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l-~P~~~~~y~~l~~~y~~ 681 (838)
+|.+.++.. .-...+|-.+...|..+|++-.|.++++..- -.. .-+++.....|+.++.+
T Consensus 668 IFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l-----------------kkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 668 IFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL-----------------KKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred HHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH-----------------HHhcccCCHHHHHHHHHHHHH
Confidence 999998542 2455678889999999999999999998651 111 23477888899999999
Q ss_pred cCCchHHHHHHHHHhh
Q 046257 682 TGHWQERARVRKLMND 697 (838)
Q Consensus 682 ~g~~~~a~~~~~~m~~ 697 (838)
.|+|.+|.+.......
T Consensus 729 ~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARH 744 (1018)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999888776654
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=6.2e-15 Score=170.93 Aligned_cols=245 Identities=10% Similarity=0.080 Sum_probs=197.4
Q ss_pred cCCHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHH
Q 046257 426 KGILDEAAKVFELIDEK------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~ 498 (838)
.+.+++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+. ..|..+-..+... +.++.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~-g~~~e 383 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLEL-GDPDK 383 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHC-CCHHH
Confidence 47889999999877642 3456888888899999999999999998863 5653 4555555566666 89999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
+...+..+++.. +.+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..|++.++
T Consensus 384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~- 461 (615)
T TIGR00990 384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK- 461 (615)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 999999887764 4467788889999999999999999999876 44677888899999999999999999999988
Q ss_pred CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-c-hH------HHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 576 DLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-E-HY------SCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 576 g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-~y------~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
..|+ ...+..+..++...|++++|.+.|+.... +.|+. . +. +.....+...|++++|.+++++.
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA--- 534 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA--- 534 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH---
Confidence 4666 56788888899999999999999999873 33432 1 11 11222344579999999999986
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|++..++..|+.+|...|++++|.+.+++..+
T Consensus 535 ---------------l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 535 ---------------LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred ---------------HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 678898999999999999999999999999998765
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=9.1e-15 Score=152.43 Aligned_cols=353 Identities=15% Similarity=0.193 Sum_probs=251.0
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHH----HH
Q 046257 315 HNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYS----II 388 (838)
Q Consensus 315 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~----~l 388 (838)
..+|..+.+.+-..|++++|..+++.+.+ ...+..|..+..++...|+.+.|.+.|.+..+ +.|+.+... .+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence 44555566666666666666666666543 23445566666666666666666666665554 334333221 22
Q ss_pred HhhCCCCChhHHHHHHHHhhccCC-cchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHH
Q 046257 389 LTAQPAVSPFQVHAHIIKTNYEKS-FSVGTALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGDTEGAV 464 (838)
Q Consensus 389 l~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~ 464 (838)
+++..+.... ..+++..-...|. ..+|+.|...+-..|++..|...|++...-|. ..|-.|...|-..+.+++|+
T Consensus 194 lka~Grl~ea-~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEA-KACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchh-HHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 2222111111 1111111112222 34567778888888999999998888765443 46777888888888899999
Q ss_pred HHHHHhhcCCCCCCHh-hHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 046257 465 KIYRQLTSEGVKPNEF-TFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR- 542 (838)
Q Consensus 465 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~- 542 (838)
..|.+... .+|+.. .+..+-..|... |.++.+...+...+.... .=+..|+-|..++-..|++.+|...+.+..
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeq-G~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQ-GLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEecc-ccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 88887765 467754 344444445555 888888888888776542 225567788888888899999999988765
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-c
Q 046257 543 --KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-E 618 (838)
Q Consensus 543 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~ 618 (838)
..-..+.+.|...|...|..++|..+|....+ +.|. ...++.|...+-+.|++++|...++..+ .|.|+. .
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 33456788888999999999999999998888 7887 4678888888999999999999998876 578875 5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.|+.|...|-..|+.++|.+.+.+. +.++|.-..++..|+.+|..+|+..+|..-++...+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rA------------------I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRA------------------IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHH------------------HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 7888888898899999999888877 788998999999999999999999999999888754
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=5.8e-14 Score=165.81 Aligned_cols=406 Identities=10% Similarity=0.004 Sum_probs=234.2
Q ss_pred chhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC-hhhHHHHHH
Q 046257 213 VTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELT-RSTFVSVIK 288 (838)
Q Consensus 213 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 288 (838)
+.....-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++..+. .|+ ......+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 334444455555566666666666665543 12223566666666666666666666665543 232 233444445
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHH
Q 046257 289 LCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLA 366 (838)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A 366 (838)
.+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ +.+...+..+...+...|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 5555666666666666655552 22333 55555555555555555555555542 12233334444455555555555
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcch
Q 046257 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA 446 (838)
Q Consensus 367 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 446 (838)
++.++.... .|+..... . ......++..+...
T Consensus 170 l~~l~~~~~---~p~~~~~l-----------------------~--~~~~~~~~r~~~~~-------------------- 201 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDL-----------------------E--ADAAAELVRLSFMP-------------------- 201 (765)
T ss_pred HHHHHhCCC---CHHHHHHH-----------------------H--HHHHHHHHHhhccc--------------------
Confidence 555544332 22200000 0 00000111111100
Q ss_pred HHHHHHHHHhcCCc---hHHHHHHHHhhcC-CCCCCHh-hHHH----HHHHhcCChhhHHHHHHHHHHHHHhcCC-Cchh
Q 046257 447 WSAMLAGYAQIGDT---EGAVKIYRQLTSE-GVKPNEF-TFSS----VINACTAPSAAVEQGKQFHACSIKAKLN-NALC 516 (838)
Q Consensus 447 ~~~li~~~~~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~~----ll~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 516 (838)
.....+++ ++|++.++.+.+. ...|+.. .+.. .+.++... +..+.+...+..+.+.+.+ |+ .
T Consensus 202 ------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-g~~~eA~~~~~~ll~~~~~~P~-~ 273 (765)
T PRK10049 202 ------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-DRYKDVISEYQRLKAEGQIIPP-W 273 (765)
T ss_pred ------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhccCCCCCH-H
Confidence 00111122 4555555555532 1122211 1100 01222233 5556666666665554421 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRK--RD-----LVSWNSMICGYAQHGHTKKALEVFKEMRRQD-----------LE 578 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~ 578 (838)
....+.+.|...|++++|+..|+++.. |. ...+..+..++...|++++|+++++++.+.. -.
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 112245678889999999999988752 21 2345667778889999999999999998742 11
Q ss_pred CCh---hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 046257 579 FDG---ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 579 pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
|+. ..+..+...+...|+.++|.++++.+.... +.+...+..+..++.+.|+.++|++.+++.
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a------------ 419 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKA------------ 419 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------
Confidence 232 234556677888999999999999987442 234567888889999999999999999987
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++..++.++..+...|+|++|..+++.+.+.
T Consensus 420 ------l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 420 ------EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred ------HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999998764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=9.3e-14 Score=164.08 Aligned_cols=397 Identities=10% Similarity=0.000 Sum_probs=225.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHH
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAF 265 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~ 265 (838)
....|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|++++|+
T Consensus 25 a~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~ 103 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL 103 (765)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444444444321 22333344444555555555555555554221 23334445555555566666666
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 046257 266 ETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMK 345 (838)
Q Consensus 266 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 345 (838)
..+++..+. .|+...+..+..++...|+.+.|...++.+++.. +.+..++..+...+.+.|..+.|.+.++.....|
T Consensus 104 ~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 104 VKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCH
Confidence 666655543 2222114445555555666666666666666554 2244445556666667777777777777665322
Q ss_pred Ce------eehHHHHHHH-----HHcCCh---HHHHHHHHHhhhc-CCCCCccc-HHHHHhhCCCCChhHHHHHHHHhhc
Q 046257 346 DV------VSWTAMISGH-----LQNGAI---DLAVNFFCQMTRE-GVRPNGFT-YSIILTAQPAVSPFQVHAHIIKTNY 409 (838)
Q Consensus 346 ~~------~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~-g~~pd~~t-~~~ll~a~~~~~~~~~~~~~~~~~~ 409 (838)
+. .....++... ...+++ ++|++.++.+.+. ...|+... +.. +
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~---a------------------ 239 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR---A------------------ 239 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH---H------------------
Confidence 20 0011111111 112223 6777788877754 22333211 110 0
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC--cch--HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD--IVA--WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
....+..+...|++++|...|+.+.+.+ ... --.+...|...|++++|+..|+++... .|....
T Consensus 240 ------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~---- 307 (765)
T PRK10049 240 ------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIAD---- 307 (765)
T ss_pred ------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCC----
Confidence 0011223346688888888888877542 111 122466788888888888888887653 222100
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-------------C---HH
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--R-------------D---LV 547 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-------------~---~~ 547 (838)
........|..++.+.|++++|.++++.+.. | + ..
T Consensus 308 ---------------------------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 308 ---------------------------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred ---------------------------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 0011122233446677788888777776652 1 1 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVD 625 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~ 625 (838)
.+..+...+...|+.++|+++++++.. ..|+. ..+..+...+...|+.++|.+.++.... +.|+ ...+..++.
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~ 435 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHH
Confidence 345667778888999999999999887 45654 5567777788888999999999988873 3465 455666677
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 626 LYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
.+.+.|++++|+.+++++ ++.+|+++.+.
T Consensus 436 ~al~~~~~~~A~~~~~~l------------------l~~~Pd~~~~~ 464 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDV------------------VAREPQDPGVQ 464 (765)
T ss_pred HHHHhCCHHHHHHHHHHH------------------HHhCCCCHHHH
Confidence 888889999999999887 66777776543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=8e-14 Score=161.06 Aligned_cols=341 Identities=9% Similarity=0.021 Sum_probs=233.4
Q ss_pred cCCChhHHHHHHhcCCCC------CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHH
Q 046257 226 KSKMVRDARAVFDGMEDR------DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLA 299 (838)
Q Consensus 226 ~~g~~~~A~~~f~~m~~~------~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 299 (838)
+..+++.-.-.|..-++. +..-.-.++..+.+.|++++|+.+++........+.. .+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence 455666655566555541 2233445677788889999999999888776433333 344444556678999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcC
Q 046257 300 RQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG 377 (838)
Q Consensus 300 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 377 (838)
.+.++.+++.. +.+...+..+...+...|+.++|...|++... +.+...|..+...+...|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999888775 34566777788888888999999888888764 3455677788888888888888888888776542
Q ss_pred CCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC----CcchHHHHHHH
Q 046257 378 VRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK----DIVAWSAMLAG 453 (838)
Q Consensus 378 ~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~ 453 (838)
|+..... ..+ ..+...|++++|...++.+.+. +...+..+...
T Consensus 175 --P~~~~a~------------------------------~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 175 --PPRGDMI------------------------------ATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred --CCCHHHH------------------------------HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 3222211 011 2255677777777777765442 22233444566
Q ss_pred HHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 046257 454 YAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIES 533 (838)
Q Consensus 454 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 533 (838)
+.+.|++++|+..|+++... .|+ +...+..+...|.+.|++++
T Consensus 222 l~~~g~~~eA~~~~~~al~~--~p~-----------------------------------~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALAR--GLD-----------------------------------GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCC-----------------------------------CHHHHHHHHHHHHHcCCchh
Confidence 67777777777777776653 233 23344456667778888875
Q ss_pred ----HHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHH
Q 046257 534 ----ASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 534 ----A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
|...|++.. +.+...|..+...+...|++++|+..+++..+ ..|+. ..+..+..++...|++++|...|+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677787665 34567888888888888888888888888887 56664 456667778888888888888888
Q ss_pred HHHhcCCccCCCch-HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 606 IMVNEHHIYPTMEH-YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 606 ~m~~~~~~~p~~~~-y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+... .|+... +..+..+|...|+.++|.+.+++.
T Consensus 343 ~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 343 QLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87743 354322 334567788888889888888876
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.69 E-value=3.8e-14 Score=163.73 Aligned_cols=325 Identities=10% Similarity=-0.000 Sum_probs=233.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHH
Q 046257 282 TFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQ 359 (838)
Q Consensus 282 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~ 359 (838)
-...++..+.+.|+++.|..++...+.....+ ......++......|+.++|...|+++.. +.+...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45556677778888888888888887775443 33444444555668888888888887753 3345567777777778
Q ss_pred cCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhc
Q 046257 360 NGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELI 439 (838)
Q Consensus 360 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 439 (838)
.|++++|+..|++.... .|+.... +..+...|...|++++|...++.+
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a------------------------------~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQI------------------------------FALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHH------------------------------HHHHHHHHHHCCChHHHHHHHHHH
Confidence 88888888888777653 3443222 234566667777777777776655
Q ss_pred CC--C-CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchh
Q 046257 440 DE--K-DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALC 516 (838)
Q Consensus 440 ~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (838)
.. + +...+..+ ..+.+.|++++|+..++++......+ +..
T Consensus 171 ~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~------------------------------------~~~ 213 (656)
T PRK15174 171 AQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE------------------------------------RQE 213 (656)
T ss_pred HHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc------------------------------------chh
Confidence 32 2 22223222 23566677777777776665432111 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCh-hHHHHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKK----ALEVFKEMRRQDLEFDG-ITFIGVI 588 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~-~t~~~ll 588 (838)
....+...|.+.|++++|...|++.. +.+...+..+...|...|+.++ |+..|++..+ ..|+. ..+..+.
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg 291 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYA 291 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 22233456778999999999998876 4467889999999999999986 8999999998 67774 5788889
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
..+...|++++|..+++..... .|+ ...+..+..+|.+.|++++|.+.++++ ++.+|+
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a------------------l~~~P~ 350 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQL------------------AREKGV 350 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HHhCcc
Confidence 9999999999999999998843 454 445677889999999999999999987 567887
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
++..+..++.+|...|++++|...++...+..
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777778889999999999999998876553
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=2.1e-13 Score=158.17 Aligned_cols=417 Identities=11% Similarity=0.026 Sum_probs=215.1
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 046257 117 TSLVDLYMRTNNVEDGRRVFDDMNE--SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI 194 (838)
Q Consensus 117 ~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 194 (838)
..+...|.+.|+++.|...|+.... |+...|..+..+|.+.|++++|++.++...+... .+...+..+..++...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCC
Confidence 3445667777888888888877543 6666777777777778888888888777766431 234566677777777788
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
+++|..-+..+...+-..+.... .++.-+........+...++.-+ .+..+|..+. .|........+..-+.+-.+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 285 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKP-ENLPSVTFVG-NYLQSFRPKPRPAGLEDSNE- 285 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHH-HHHHHccCCcchhhhhcccc-
Confidence 87777766655444311111111 11111111111223333332221 1222332221 12221111111111111000
Q ss_pred CCCCCh-hhHHHHHH---HHhccCcHHHHHHHHHHHHHhC-C-CCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CC-C
Q 046257 275 GAELTR-STFVSVIK---LCATTKELRLARQLHSQVLKNG-I-DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MK-D 346 (838)
Q Consensus 275 g~~p~~-~t~~~ll~---~~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~ 346 (838)
..|.. ..+..+.. -....+++++|.+.++..++.+ . +.....++.+...|...|++++|...|++..+ .| +
T Consensus 286 -~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 286 -LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred -cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 01110 00000000 0122355666666666666554 1 22344556666666666777777776666542 22 2
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK 426 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~ 426 (838)
...|..+...+...|++++|+..|++..+. .|+.. .++..+...|...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~------------------------------~~~~~lg~~~~~~ 412 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDP------------------------------DIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------------------------------HHHHHHHHHHHHc
Confidence 335566666666677777777777666553 22211 1223455556666
Q ss_pred CCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC-HhhHHHHHHHhcCChhhHHHHHHH
Q 046257 427 GILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQF 502 (838)
Q Consensus 427 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~ 502 (838)
|++++|...|+...+ .+...|..+...+.+.|++++|+..|++.... .|+ ...+..+-..+... +.++.+...
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~-g~~~~A~~~ 489 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQ-NKFDEAIEK 489 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHc-cCHHHHHHH
Confidence 777777776665543 23445556666666677777777777666542 333 34444444455555 666666666
Q ss_pred HHHHHHhcCCCchh------HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 503 HACSIKAKLNNALC------VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 503 ~~~~~~~~~~~~~~------~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
+...+......+.. .++.....|...|++++|.+++++.. +.+...|..+...|.+.|++++|++.|++..
T Consensus 490 ~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 490 FDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred HHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66665543221111 11111222334466666666666543 2334456666666666777777777666665
Q ss_pred H
Q 046257 574 R 574 (838)
Q Consensus 574 ~ 574 (838)
+
T Consensus 570 ~ 570 (615)
T TIGR00990 570 E 570 (615)
T ss_pred H
Confidence 5
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.7e-12 Score=130.20 Aligned_cols=441 Identities=14% Similarity=0.137 Sum_probs=259.1
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhc--cCCChhh-HHHHHHHHHHhCCCCChhHHHHHH
Q 046257 44 VEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCG--CLFDHVF-GRQVHCECVKSGFARDVNVSTSLV 120 (838)
Q Consensus 44 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li 120 (838)
.+=|.|+.. ...|...++.-+|++|...|++.+...-..+++.-+ ...++.. -.+-|-.|.+.|- .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc----
Confidence 355666654 457888899999999999998888776555544322 2222222 1222333333332 222222
Q ss_pred HHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 046257 121 DLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQ 200 (838)
Q Consensus 121 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 200 (838)
|.|.+.+ -+|+. ..++..+|..||.|+++--..+.|.++|++-.....+.+..+||.+|.+-.- ..+++
T Consensus 191 ----K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred ----ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 4465544 44444 4456678999999999999999999999999988889999999999988653 34589
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh
Q 046257 201 VHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR 280 (838)
Q Consensus 201 l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 280 (838)
+..+|+...+.||.+++|+++...++.|+++.|++.+ ++++.+|++-|+.|..
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcch
Confidence 9999999999999999999999999999988876543 3344445555555555
Q ss_pred hhHHHHHHHHhccCcHHH-HHHHHHHHHHh----CCCC----ChhHHHHHHHHHHcCCChHHHHHHHHhccc-------C
Q 046257 281 STFVSVIKLCATTKELRL-ARQLHSQVLKN----GIDF----DHNIRTGLMVAYSKCGKMEDASKIFSMMRE-------M 344 (838)
Q Consensus 281 ~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----g~~~----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-------~ 344 (838)
.+|..+|..+++.++... +..+..++... .+.| |...+..-++.+.+..+.+-|.++-.-+.. .
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 555555554444443322 22222222211 1111 222333334444444444444444333321 1
Q ss_pred CC---eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHH
Q 046257 345 KD---VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLN 421 (838)
Q Consensus 345 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~ 421 (838)
++ .+-|..+....++....+.-+..|+.|.-.-.-|+..+..-+++|....+
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~------------------------- 447 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN------------------------- 447 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC-------------------------
Confidence 11 12255666777888888888889998888777788888776666544333
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh---hHHHHHHHhcCChhhHHH
Q 046257 422 AYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF---TFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 422 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~~~~~~~ 498 (838)
.++-..+++..+.. |...-+.+--++++..|......|+.. -+.....-|+ .+..+
T Consensus 448 ------~~e~ipRiw~D~~~------------~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a---ad~~e 506 (625)
T KOG4422|consen 448 ------RLEVIPRIWKDSKE------------YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA---ADIKE 506 (625)
T ss_pred ------cchhHHHHHHHHHH------------hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH---HHHHH
Confidence 33333333322211 110111112233444444443444332 3444333332 22222
Q ss_pred HHHH-HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-C----CCHHHHHHHH---HHHHHcCChHHHHHHH
Q 046257 499 GKQF-HACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-K----RDLVSWNSMI---CGYAQHGHTKKALEVF 569 (838)
Q Consensus 499 ~~~~-~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~----~~~~~~~~li---~~~~~~g~~~~A~~l~ 569 (838)
+-+. -..+.+ ........+...-.+.+.|+.++|.++|..+. + |.....|+|+ ..-.+..++..|+..+
T Consensus 507 ~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 507 AYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 2221 222222 33445556666777889999999999998773 2 2233455444 4555667788888888
Q ss_pred HHHHHcC
Q 046257 570 KEMRRQD 576 (838)
Q Consensus 570 ~~m~~~g 576 (838)
+-|...+
T Consensus 585 Q~a~~~n 591 (625)
T KOG4422|consen 585 QLASAFN 591 (625)
T ss_pred HHHHHcC
Confidence 8886644
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=3.4e-13 Score=146.59 Aligned_cols=257 Identities=12% Similarity=0.052 Sum_probs=167.8
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCC
Q 046257 64 NLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESN 143 (838)
Q Consensus 64 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 143 (838)
.++..|...|+.|+.+||.+++..|+..|+.+.|- ++..|.-...+.+..+++.++......++.+.+. +|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777888888888888888888888888888 8888877777777788888888888888877665 677
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHH-HH-------HCCCCCChhhHHHHHHHHhcCC-Ch------HHHHHHHHHHHHh
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHR-MQ-------VEGIKPNSFTFSTVLGVLADEG-IV------ATAVQVHTMVIKN 208 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~~~g-~~------~~a~~l~~~~~~~ 208 (838)
..+|+.|..+|.+.|+... ++..++ |. ..|+.--..-|-..+++|-..- +. .--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888654 222222 21 1222212222222222221110 00 0011222333333
Q ss_pred CCCCchhHHH--H--HHHHhHc-CCChhHHHHHHhcCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhh
Q 046257 209 GGEVVTSVCN--A--LISMYLK-SKMVRDARAVFDGME-DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRST 282 (838)
Q Consensus 209 g~~~~~~~~~--~--li~~y~~-~g~~~~A~~~f~~m~-~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 282 (838)
+...-+..++ . .++-... ...+++-........ .++..++.+.+..-..+|+.+.|..++.+|.+.|+..+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 2100000000 0 1111111 122333333333333 37889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChH
Q 046257 283 FVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332 (838)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 332 (838)
|..++-+ .++...+..+..-|...|+.|+..|+...+-...+.|...
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 9988866 7888889999999999999999999988887777765533
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=1.1e-12 Score=151.95 Aligned_cols=190 Identities=11% Similarity=0.045 Sum_probs=147.3
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CHHHHHHHHHHHHH
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR---------DLVSWNSMICGYAQ 558 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~ 558 (838)
+.... +....+...+..+...+.+....+--++.++|...++.++|+.++.++... +......|.-+|..
T Consensus 301 aL~~r-~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 301 ALLVR-HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHh-hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 33344 667777777777777776656667778888999999999999999876421 23335678888999
Q ss_pred cCChHHHHHHHHHHHHcCC-----------CCCh---hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDL-----------EFDG---ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
.+++++|..+++++.+.-. .||. ..+..++..+...|++.+|++.++.+.... +-|......+.
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A 457 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA--PANQNLRIALA 457 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 9999999999999987311 1222 234455667788999999999999997432 33677888899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+++...|+..+|++.++.. ..++|++....+.++..+...|+|++|.++.+...+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a------------------~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAV------------------ESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHhcCCHHHHHHHHHHH------------------hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999766 5679999999999999999999999999988877664
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=1.3e-11 Score=143.08 Aligned_cols=430 Identities=10% Similarity=0.093 Sum_probs=256.3
Q ss_pred HHHhCCChHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh---HHHHHHHHhcCCCh
Q 046257 122 LYMRTNNVEDGRRVFDDMNESNVV---SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT---FSTVLGVLADEGIV 195 (838)
Q Consensus 122 ~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~ 195 (838)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.. .|+... ...+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 457789999999999888753332 23378888888899999998888876 333222 22234566777888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHh--CCChHHHHHHHHHhhh
Q 046257 196 ATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVT--NELHMEAFETFNNMGL 273 (838)
Q Consensus 196 ~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~--~g~~~~A~~l~~~m~~ 273 (838)
++|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888876 44466667777888888888888888887776444332223334443 4445457777777766
Q ss_pred CCCCCC-hhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHH
Q 046257 274 AGAELT-RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTA 352 (838)
Q Consensus 274 ~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~ 352 (838)
. .|+ ...+.....+..+.|-...|.++... .|+.++-...... ..+.|.+..+... .++.
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~-~~~~----- 258 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAV-LPTR----- 258 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcc-cccc-----
Confidence 5 343 33445555555555555555544433 1221111111100 0111111111110 0000
Q ss_pred HHHHHHHcCC---hHHHHHHHHHhhhc-CCCCCc-ccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC
Q 046257 353 MISGHLQNGA---IDLAVNFFCQMTRE-GVRPNG-FTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG 427 (838)
Q Consensus 353 li~~~~~~g~---~~~A~~l~~~m~~~-g~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g 427 (838)
....+ .+.|+.-++.+... +-.|.. .-|.. ..--.+-++.+.|
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~---------------------------~~~Drl~aL~~r~ 306 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQR---------------------------ARIDRLGALLVRH 306 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH---------------------------HHHHHHHHHHHhh
Confidence 00111 24455555554431 222221 11110 0012344566778
Q ss_pred CHHHHHHHHHhcCCCC--cc--hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 428 ILDEAAKVFELIDEKD--IV--AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
++.++.+.|+.+.... +. .--++.++|...+++++|+.+|++.....-.+.
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~------------------------- 361 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF------------------------- 361 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc-------------------------
Confidence 8888888888887432 23 345677888888888888888888755321000
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------CCHH-HHHHHHHHHHHcCChHHH
Q 046257 504 ACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----------------RDLV-SWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 504 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----------------~~~~-~~~~li~~~~~~g~~~~A 565 (838)
..+++......|.-+|...+++++|..+++++.+ ||-. ....++..+...|+..+|
T Consensus 362 ------~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 362 ------RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ------CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 0011222233455556666777777776666542 1212 233456678888999999
Q ss_pred HHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 566 LEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+.++++.. ..|. ......+...+...|...+|.+.++... .+.|+ .......+..+...|++++|..++++.
T Consensus 436 e~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 436 QKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999987 4564 5667778888889999999999997665 34564 345666777788889999999998876
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=5.3e-12 Score=126.71 Aligned_cols=439 Identities=16% Similarity=0.174 Sum_probs=274.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHH-HHHHHHHHHhCCCCchhHHHHH
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLA--DEGIVATA-VQVHTMVIKNGGEVVTSVCNAL 220 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a-~~l~~~~~~~g~~~~~~~~~~l 220 (838)
+++=|.|+.. ..+|...++.-+|+.|++.|+......-..|++..+ ...++-.+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455666554 457889999999999999998777666555555433 22233222 22333344444 2222333
Q ss_pred HHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHH
Q 046257 221 ISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLAR 300 (838)
Q Consensus 221 i~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 300 (838)
+.|++.+ -+|+..+ +...++..||.|+++--..+.|.++|++-.....+.+..+|+.+|.+.+- ..++
T Consensus 191 -----K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3344433 4454444 46678999999999999999999999999998899999999999987653 3448
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCC
Q 046257 301 QLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRP 380 (838)
Q Consensus 301 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 380 (838)
.+..+|....+.||..++|+++....+.|+++.|++.+ ++++.+|++-|+.|
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa----------------------------lqil~EmKeiGVeP 310 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA----------------------------LQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH----------------------------HHHHHHHHHhCCCc
Confidence 88999999999999999999999999999888776543 33344555555555
Q ss_pred CcccHHHHHhhCCCCChh---------HHHHHHHHhhccC----CcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-----
Q 046257 381 NGFTYSIILTAQPAVSPF---------QVHAHIIKTNYEK----SFSVGTALLNAYVKKGILDEAAKVFELIDEK----- 442 (838)
Q Consensus 381 d~~t~~~ll~a~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----- 442 (838)
...+|..++..+.+.++. .|...+....+.| |...+.+-++.+.+..+.+-|.++-.-....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 555555555544444433 1111111122222 2233445566666777777777776655432
Q ss_pred ------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchh
Q 046257 443 ------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALC 516 (838)
Q Consensus 443 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (838)
...-|..+....++....+.-+.+|+.|.-.-+-|+..+...+++|.... +.++....++..++..|......
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~-~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA-NRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc-CcchhHHHHHHHHHHhhhhhhHH
Confidence 22346677888889999999999999999888899999999999988777 88888888888887766443322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQH-GHTKKA-LEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~-g~~~~A-~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
+..-+ +.++-.-+ .|+...-..+-.+.++. -++.++ ...-.+|.+..+.| ...+.++..+.+
T Consensus 470 l~eei-------------l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 470 LREEI-------------LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLR 534 (625)
T ss_pred HHHHH-------------HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHH
Confidence 22222 22222222 22222111111111111 012222 22233455544443 345555556678
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHH---HHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV---DLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv---~~l~r~G~~~~A~~~~~~m 643 (838)
.|..++|+++|....+.+.-.|.....++|+ |.-.+....-.|...++-|
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8899999998888865555455555555443 4444555566666666544
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=6.6e-10 Score=117.59 Aligned_cols=595 Identities=12% Similarity=0.105 Sum_probs=334.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHc
Q 046257 58 LHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFD 137 (838)
Q Consensus 58 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 137 (838)
+...|..++...++.+ |.++..|.+-.+.=-..|.+..|+.+ +..|.+-.+..-..-+. -++....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~----I~~GCe~cprSeDvWLe-aiRLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNL----IMKGCEECPRSEDVWLE-AIRLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHH----HHHHHhhCCchHHHHHH-HHhcCChHHHHHHHH
Confidence 4566777777777665 34444554444433344455555544 33343322221111111 123344455555554
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 046257 138 DMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217 (838)
Q Consensus 138 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 217 (838)
......+.+-..-+.+---..+...=..+++...+. -|+.+. |=.+.....+.+.|+-++..+++.- +.+..
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~d-- 411 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMD-- 411 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHH--
Confidence 443311111111111111111222223344444432 244332 2334445556666777777777653 22233
Q ss_pred HHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHH----hhhCCCCCChhhHHHHHHHH
Q 046257 218 NALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNN----MGLAGAELTRSTFVSVIKLC 290 (838)
Q Consensus 218 ~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~ 290 (838)
|.-+|++..-++.|.++++...+ .+...|-+-...--++|+.+....+..+ +...|+..+..-|..=..+|
T Consensus 412 --LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 412 --LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 34455666677778887776554 3666776666656677777777666654 45567888888887777788
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHH
Q 046257 291 ATTKELRLARQLHSQVLKNGIDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLA 366 (838)
Q Consensus 291 ~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A 366 (838)
-..|..-.+..+...++..|++.. ..+++.-...+.+.+.++-|+.+|....+ ..+...|...+..=-..|..++.
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 888888888888888887776543 45666777778888888888888776653 34556677777666677888888
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CC
Q 046257 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KD 443 (838)
Q Consensus 367 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~ 443 (838)
..+|++....- |....+ |-....-+-..|++..|+.++++.-+ .+
T Consensus 570 ~Allqkav~~~--pkae~l------------------------------wlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 570 EALLQKAVEQC--PKAEIL------------------------------WLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHHHHHhC--CcchhH------------------------------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 88887777642 211111 11223334455666666666665543 23
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046257 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVT 523 (838)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 523 (838)
...|-+-+..-..+..+++|..+|.+... ..|+...|.--..---.+ +..+.++++....++. ++.-...|-.+..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~l-d~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYL-DNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHh-hhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 34566666666666666666666666654 334444433222222222 5566666666555543 2223445555666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 600 (838)
.|-..++++.|.+.|..-. +..+..|-.+...=-+.|+..+|..++++.+-.+ +-|...|...|..-.+.|+.++|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 6666666666666665544 2234456555555556666666666666666532 11345566666666666666666
Q ss_pred HHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH---------HH-----HhccCC
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAA---------CR-----LISLQP 666 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~---------c~-----~~~l~P 666 (838)
..+..+..++. +.+-..|..-|.+..+.++-..+.+.+++-...|.+. -+.-.. || .+..+|
T Consensus 773 ~~lmakALQec--p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl--laia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 773 ELLMAKALQEC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL--LAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHhC--CccchhHHHHHHhccCcccchHHHHHHHhccCCchhH--HHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 66666555432 2223345555555555555555555555543223221 111000 11 478999
Q ss_pred CCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 046257 667 HDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEV 711 (838)
Q Consensus 667 ~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 711 (838)
++..++..+-..+..+|.-++-.+++++.... .|.-|-.|+-+
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 99999999999999999999999999887653 23346666543
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=6.7e-11 Score=129.16 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=91.4
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHhhcCCC-CCC-HhhHHHH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEKDI------VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV-KPN-EFTFSSV 485 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~l 485 (838)
..|..||+.+......+.|..+.+++..++. .-+..+.+...+.+....+..++.+|.+.-. .|+ ..++-.+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5678899999999999999999999987644 4578889999999999999999999987422 222 3444455
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQ 541 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 541 (838)
++.-+.. +..+.-++.++.+...|+..+ .-|+....+.++...|.++++..
T Consensus 572 lns~a~a-gqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 572 LNSGAPA-GQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred Hhhhhhc-cCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 6666666 888999999999888887553 22333345667777777776543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=1.6e-08 Score=107.34 Aligned_cols=473 Identities=14% Similarity=0.131 Sum_probs=284.9
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLEL 166 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 166 (838)
...+.+.|+.++....+.= +.+.. |.-+|++...++.|.++++...+ .+...|.+-...=-.+|+.+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 4445555676666655542 22223 44456677778888888876654 4666777776666777877777776
Q ss_pred HHH----HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHcCCChhHHHHHHhcC
Q 046257 167 FHR----MQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEV--VTSVCNALISMYLKSKMVRDARAVFDGM 240 (838)
Q Consensus 167 ~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m 240 (838)
..+ +...|+..|...|..=..+|-..|.+-.+..+....+..|++. -..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 4567777787777777777777777777777777777766533 2346666666777777777777777654
Q ss_pred CC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhH
Q 046257 241 ED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNI 317 (838)
Q Consensus 241 ~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 317 (838)
.+ .+...|...+..--..|..++-..+|++.... .+-....+....+..-..|++..|+.++..+.+... .+..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHH
Confidence 43 24455665555555556666666666666543 111222233333344445666666666666655542 24555
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 318 RTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 318 ~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
+-+-+..-.....++.|+.+|.+... .++...|..-+..---.+..++|++++++..+. -|+..
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~------------- 685 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFH------------- 685 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchH-------------
Confidence 55556666666666666666655542 333444444444444445555555555544432 12211
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
..|-.+...+-+.++.+.|.+.|..-.+ ..
T Consensus 686 ------------------------------------------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~c 715 (913)
T KOG0495|consen 686 ------------------------------------------------KLWLMLGQIEEQMENIEMAREAYLQGTK--KC 715 (913)
T ss_pred ------------------------------------------------HHHHHHhHHHHHHHHHHHHHHHHHhccc--cC
Confidence 1344444444455555555555543322 23
Q ss_pred CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 477 PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 477 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
|+..-+=.++.-.-...+.+-.|+.++......+ +.+...|-..|.|-.+.|+.+.|..+..+.. +.+-..|..-|
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 4443333333222222234445555555444433 3456677778888888899998888776654 33556788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGM 632 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~ 632 (838)
....+.++-.++...+++ ..-|+.....+...+-....++.|++.|.+.++ +.|+. .+|.-+...+.+.|.
T Consensus 795 ~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk---~d~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK---KDPDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred HhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCccchHHHHHHHHHHHhCC
Confidence 777777776666655544 344777777777888888889999999998873 45654 567777788889998
Q ss_pred HHHHHHHHhhC
Q 046257 633 LEKAMDIINRM 643 (838)
Q Consensus 633 ~~~A~~~~~~m 643 (838)
-++-.+++.+.
T Consensus 867 eed~kev~~~c 877 (913)
T KOG0495|consen 867 EEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHH
Confidence 88878887765
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=4.5e-11 Score=120.62 Aligned_cols=124 Identities=8% Similarity=0.042 Sum_probs=58.4
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHhCCCCChhHH-HHHHHHHHhCCChHHHHHHHccC----CCCC----cchHHHHHHH
Q 046257 83 SVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVS-TSLVDLYMRTNNVEDGRRVFDDM----NESN----VVSWTSLLSG 153 (838)
Q Consensus 83 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m----~~~~----~~~~~~li~~ 153 (838)
.|...|.......+|+..++-+.+...-|+.-.. -.+-+.|.+...+..|.+.+.-. |.-+ .-..|.+--.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3444444444555555555555554443433221 12223455555555555544322 2111 1123333334
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 046257 154 YARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKN 208 (838)
Q Consensus 154 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~ 208 (838)
+.+.|.+++|+.-|+...+. .||..+-..|+-++...|+-++.++.|..++..
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 45566666666666555443 355554444444444555666666666655544
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=6.2e-09 Score=114.97 Aligned_cols=603 Identities=10% Similarity=0.030 Sum_probs=368.9
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHH
Q 046257 53 YCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDG 132 (838)
Q Consensus 53 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 132 (838)
+...|+.++|.+++.+..+.. +.....|.+|-..|-..|+.+.+...+-.+.... +.|...|-.+-....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334599999999999998765 5667789999999999999998887654433333 45668899999999999999999
Q ss_pred HHHHccCCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH----HHHHHhcCCChHHHHHHHHHH
Q 046257 133 RRVFDDMNESNVVSWTS---LLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST----VLGVLADEGIVATAVQVHTMV 205 (838)
Q Consensus 133 ~~~f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~~~~~~g~~~~a~~l~~~~ 205 (838)
+-.|.+..+.++.-|-. -...|-+.|+...|++-|.++.+.....|-.-+.. +++.+...++-+.|.+.+...
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999887644433433 45678899999999999999987654333333333 344555666668888877777
Q ss_pred HHhC-CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC----C----------------------CcchHHH----HHHH
Q 046257 206 IKNG-GEVVTSVCNALISMYLKSKMVRDARAVFDGMED----R----------------------DSITWNS----MVAG 254 (838)
Q Consensus 206 ~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~----------------------~~~~~n~----li~~ 254 (838)
...+ -..+...++.++.+|.+...++.|......+.. + +..+|+. +.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 6632 244566788888889988888888877655443 1 1122221 2233
Q ss_pred HHhCCChHHHHHHHHHhhhCC--CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChH
Q 046257 255 YVTNELHMEAFETFNNMGLAG--AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKME 332 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 332 (838)
+++....+....+.....+.. +.-+...|.-+..++...|.+.+|..++..+......-+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 344443344444444444555 333455788899999999999999999999998876667889999999999999999
Q ss_pred HHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhcc
Q 046257 333 DASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYE 410 (838)
Q Consensus 333 ~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 410 (838)
+|...|..+.. +.+...--+|-..+.+.|+.++|++.+..|. .||..+- .+| +.+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~D~~~~----e~~---------------a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII----NPDGRNA----EAC---------------AWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CCCccch----hhc---------------ccc
Confidence 99999998863 2234445556677889999999999999886 3443321 111 122
Q ss_pred CCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHH-----------HHHHhcCCchHHHHHHHHhhcCCCCCCH
Q 046257 411 KSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAML-----------AGYAQIGDTEGAVKIYRQLTSEGVKPNE 479 (838)
Q Consensus 411 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 479 (838)
++..+.--..+.|.+.|+.++-..+-..|..+ .....++ .+-...+...+-......|...+. +.
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~--~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~--~~ 599 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDD--FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT--DD 599 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC--ch
Confidence 22223334556666777766633332222110 0000000 000001111111111111211110 00
Q ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH----HH
Q 046257 480 FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL--CVSSALVTMYSKKGNIESASEVFKRQRKR-----DL----VS 548 (838)
Q Consensus 480 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~----~~ 548 (838)
.+...- ...+ .........++.-+. ..+.-++...+|.|+.++|..+...+..- +. ..
T Consensus 600 ~~~~~~----------l~d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l 668 (895)
T KOG2076|consen 600 NVMEKA----------LSDG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKEL 668 (895)
T ss_pred HHhhhc----------ccch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHH
Confidence 000000 0000 000111111222111 23445777889999999999998876632 21 12
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHH-
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQ-DL--EFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCM- 623 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~--~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l- 623 (838)
-+.++.+....+++.+|.+.++.|... +. .|.. ..|+...+..+..|+-.-=.+++.... -..|+-.++-++
T Consensus 669 ~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i 745 (895)
T KOG2076|consen 669 QFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALI 745 (895)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeee
Confidence 345667778899999999999999874 22 2332 345545555555544332223322221 222333233222
Q ss_pred -HHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHH-------------------------HhccCC--CCchhHHH
Q 046257 624 -VDLYSRAGMLEKAMDIINRM-PFAASATVWRTVLAACR-------------------------LISLQP--HDSAIYVL 674 (838)
Q Consensus 624 -v~~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll~~c~-------------------------~~~l~P--~~~~~y~~ 674 (838)
...+...|.+.-|...+-+. ...||.+..+-+++..- ..++.- +-..+.+.
T Consensus 746 ~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN 825 (895)
T KOG2076|consen 746 YGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN 825 (895)
T ss_pred echhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 24556778888887765432 23456555555554431 122222 35678889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhC
Q 046257 675 LSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 675 l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++.+|-..|-..-|...+++..+-
T Consensus 826 igRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 826 IGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHcccHHHHHHHHHHHhCC
Confidence 999999999999999999988764
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=7.7e-09 Score=114.22 Aligned_cols=505 Identities=13% Similarity=0.146 Sum_probs=331.5
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccC---CCCCcchHHHHHHHHHhCCCchHHHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDM---NESNVVSWTSLLSGYARNKMNDRVLEL 166 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l 166 (838)
..|+++.|..++.++++.. +.....|-.|...|-..|+.+++...+--. ...|..-|-.+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999886 466778999999999999999998877443 345678899999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH----HHHhHcCCChhHHHHHHhcCCC
Q 046257 167 FHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNAL----ISMYLKSKMVRDARAVFDGMED 242 (838)
Q Consensus 167 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~A~~~f~~m~~ 242 (838)
|.+..+... ++...+---...|-+.|+...|..-+.++.....+.|..-...+ +..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999988642 34444455566788899999999999999887643343333333 4455666777888888887654
Q ss_pred --C---CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh----------------------hhHH----HHHHHHh
Q 046257 243 --R---DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR----------------------STFV----SVIKLCA 291 (838)
Q Consensus 243 --~---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------------~t~~----~ll~~~~ 291 (838)
. +...+|.++..|.+...++.|......+.....++|. ..|. -+.-+..
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 4556899999999999999999999888762222221 1111 1222334
Q ss_pred ccCcHHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHcCCChHHHHHHHHhccc---CCCeeehHHHHHHHHHcCChHHH
Q 046257 292 TTKELRLARQLHSQVLKNG--IDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE---MKDVVSWTAMISGHLQNGAIDLA 366 (838)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A 366 (838)
..+..+....+...+.+.. +..+...+.-+.++|...|++.+|.++|..+.. ..+...|-.+..+|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 5566666667777777776 445677899999999999999999999999975 23567899999999999999999
Q ss_pred HHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcc-
Q 046257 367 VNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIV- 445 (838)
Q Consensus 367 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~- 445 (838)
.+.|...... .|+..-- ..+|...|.+.|+.++|.+++..+..+|..
T Consensus 469 ~e~y~kvl~~--~p~~~D~------------------------------Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDA------------------------------RITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHHHHHhc--CCCchhh------------------------------hhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9999999873 4443322 236777899999999999999998766521
Q ss_pred ----hH-------HHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc
Q 046257 446 ----AW-------SAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514 (838)
Q Consensus 446 ----~~-------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (838)
.| -.....|.+.|+.++=+.+-.+|..... ....+ + ......+.. .....+....
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f----~~~~k~r~~--~~~~~~~~~~ 582 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--F----PRNKKKRRR--AIAGTTSKRY 582 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--c----chHHHHHHH--hhcccccccc
Confidence 11 2234556667777775555555543210 00000 0 000000000 0000001111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHH--------hcCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC--CC
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFK--------RQRKRDLVSW----NSMICGYAQHGHTKKALEVFKEMRRQDLE--FD 580 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~--------~~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd 580 (838)
......++.+-.+.++....++-.. ....-...-| .-+|..+++.|++++|+.+...+.+.... ++
T Consensus 583 ~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~ 662 (895)
T KOG2076|consen 583 SELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDS 662 (895)
T ss_pred chhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccH
Confidence 2222223333333333222221111 1111122223 44677889999999999999988875432 22
Q ss_pred h-h-HHH-HHHHHHhccCCHHHHHHHHHHHHhcCCccCCC---chHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 581 G-I-TFI-GVITACTHAGLVDEGQQYFDIMVNEHHIYPTM---EHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 581 ~-~-t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
. . .+- ..+.++...+++..|..++..|....+...++ ..|++....+.+.|+-.-=..++..
T Consensus 663 ~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 663 EIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 232 34556678999999999999998664443332 2456555555555554444444443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=1.1e-12 Score=136.63 Aligned_cols=252 Identities=16% Similarity=0.259 Sum_probs=115.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHh-cCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 418 ALLNAYVKKGILDEAAKVFEL-IDE----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
.+..++.+.|++++|.++++. +.. .|..-|..+.......++.++|++.++++...+.. +...+..++.- ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456778899999999999954 322 35566777777777899999999999999875432 33444444444 344
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
+..+.+..+.....+.. +++..+..++..|.+.|+++++.++++... +.+...|..+...+.+.|+.++|++
T Consensus 91 -~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 -GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred -ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78888887766554432 456677788899999999999999998854 4577889999999999999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 568 VFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 568 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
.|++.++ ..|+ ......++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|...+++.
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~--- 240 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKA--- 240 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH---
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccc---
Confidence 9999999 6786 5667889999999999999999998887543 556778889999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+..+|+|+.....++.++...|+.++|.++++..-
T Consensus 241 ---------------~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 241 ---------------LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---------------HHHSTT-HHHHHHHHHHHT----------------
T ss_pred ---------------ccccccccccccccccccccccccccccccccccc
Confidence 78899999999999999999999999999988653
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.8e-09 Score=109.49 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=130.7
Q ss_pred cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
.|+.-.|.+-|+..+.....++.. |.-+-..+... .+.+.....+....+.+ +.++.+|-.-..++.-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~-~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADE-NQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhh-hccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 567777777777776644333331 33333344444 55555666666665544 2244445445555555666777777
Q ss_pred HHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 046257 537 VFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHH 612 (838)
Q Consensus 537 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 612 (838)
=|++.. +.++..|-.+..+.-+.+++++++..|++..++ -|+ ...|+.....+...++++.|.+.|+..++
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 666554 234455555555555666677777777776663 343 45566666666667777777777766652
Q ss_pred ccCCC---------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 613 IYPTM---------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 613 ~~p~~---------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
++|+. -+-..++-+-.+ +++..|.+++++. +++||....+|..|+.+-...|
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA------------------~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKA------------------IELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHH------------------HccCchHHHHHHHHHHHHHHHh
Confidence 23331 111111111122 6666666666665 8999999999999999999999
Q ss_pred CchHHHHHHHHHh
Q 046257 684 HWQERARVRKLMN 696 (838)
Q Consensus 684 ~~~~a~~~~~~m~ 696 (838)
+.++|.++|++--
T Consensus 552 ~i~eAielFEksa 564 (606)
T KOG0547|consen 552 KIDEAIELFEKSA 564 (606)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998754
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7.5e-09 Score=104.87 Aligned_cols=249 Identities=14% Similarity=0.203 Sum_probs=178.3
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcchHHH----H-HHHHHhcC-CchHHHHHHHHhhcCCCCCCHhhHHHHHH--HhcCC
Q 046257 421 NAYVKKGILDEAAKVFELIDEKDIVAWSA----M-LAGYAQIG-DTEGAVKIYRQLTSEGVKPNEFTFSSVIN--ACTAP 492 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~----l-i~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~ 492 (838)
.-|.+.|+++.|.+++.-...+|..+-++ | +--|.+.| ++.+|-+.-+..... |.+.-..+.+ ..+-.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHHHhhcCCceeee
Confidence 35789999999999988887665543322 2 22233333 566666655544331 1111111111 00112
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 569 (838)
+|+++.+.+.+...+...-.-....+|. .-.|-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 3899999999988876543323333332 224778999999999997665 567777778888999999999999999
Q ss_pred HHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CCCC
Q 046257 570 KEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PFAA 647 (838)
Q Consensus 570 ~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~ 647 (838)
.+... +-| |+..++-|...|-+.|+-.+|.+++-.-- .-++-+.++...|..-|....-.++|..+|++. -+.|
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 88776 555 56788889999999999999999886532 124457888888888889999999999999987 4789
Q ss_pred CHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 648 SATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.+-|.-++++| +.+.|++..|..+++....
T Consensus 658 ~~~kwqlmiasc-------------------~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASC-------------------FRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHH-------------------HHhcccHHHHHHHHHHHHH
Confidence 999999999998 7888888888888887764
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=3.6e-07 Score=93.78 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=57.2
Q ss_pred cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
+.+...|.+++.... |..|-..+|...|.-=-++ +.++..+.++...+..+ +.+..+|.-....=...|+.+.|..
T Consensus 417 q~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL-~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 417 QLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL-REFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444333 3344444444444433333 44444444444444433 2233444444444445566666666
Q ss_pred HHHhcC-CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 537 VFKRQR-KR----DLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 537 ~f~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
+|+-.. +| ....|-+.|.-=...|.+++|..+|+++++
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 666443 22 234566666666666666666666666666
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=4.4e-09 Score=115.37 Aligned_cols=254 Identities=13% Similarity=0.038 Sum_probs=167.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcCC--CCc--chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChh
Q 046257 420 LNAYVKKGILDEAAKVFELIDE--KDI--VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSA 494 (838)
Q Consensus 420 i~~y~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~ 494 (838)
...+...|+.+.|.+.+....+ ++. ...-.....+.+.|++++|++.++++.+. .|+. .....+...+... +
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~-~ 201 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRS-G 201 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH-h
Confidence 3445566777777777776532 222 12222356666677777777777777764 3433 3444555555555 7
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHH-------HHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHH
Q 046257 495 AVEQGKQFHACSIKAKLNNALCVSS-------ALVTMYSKKGNIESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKK 564 (838)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 564 (838)
+.+.+......+.+.+..+...... .+++.-......+...++++..+. .+...+..+...+...|+.++
T Consensus 202 d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 7777777777777765443322211 111111222234455555666653 488899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHH---HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 565 ALEVFKEMRRQDLEFDGITF---IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 565 A~~l~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
|.+++++..+ ..||.... ..........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+
T Consensus 282 A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 282 AQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999 45665421 222222344688899999998887554333332556789999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 642 RMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 642 ~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+.. .++.+| ++..+..++.++.+.|+.++|.+++++-
T Consensus 360 ~a~----------------a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 360 NVA----------------ACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HhH----------------HhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 421 156677 5555779999999999999999999875
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.25 E-value=6e-09 Score=113.64 Aligned_cols=281 Identities=10% Similarity=0.029 Sum_probs=158.0
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcCCChHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHN--IRTGLMVAYSKCGKMEDAS 335 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~ 335 (838)
.|++++|.+.+....+..-.| ...|.....+..+.|+.+.+.+.+..+.+. .|+.. ........+...|+.++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666655543321111 222333344446667777777777777654 33332 2223456777888888888
Q ss_pred HHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCc
Q 046257 336 KIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSF 413 (838)
Q Consensus 336 ~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 413 (838)
..++.+.+ +.+......+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 88877754 345566777888888888888888888888876544322 1110000
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
.++..++.......+.+...++++.++. .+......+...+...|+.++|.+++++..+. .||.....
T Consensus 230 ~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~------- 300 (398)
T PRK10747 230 QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL------- 300 (398)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH-------
Confidence 0001122223333445556666666653 35556677777777777777777777766652 33331110
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
+......++.+++.+..++.. +.|...+..+...+.+.|++++|.+
T Consensus 301 -------------------------------l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 301 -------------------------------LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred -------------------------------HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 001112355555555555443 2244455555666666666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 568 VFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 568 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
.|++..+ ..|+..++..+..++.+.|+.++|.+++++-
T Consensus 350 ~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 350 AFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665 4566666556666666666666666665544
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.24 E-value=3.1e-09 Score=115.88 Aligned_cols=246 Identities=8% Similarity=-0.027 Sum_probs=149.1
Q ss_pred HhCCChHHHHHHHccCCC--CCcchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 046257 124 MRTNNVEDGRRVFDDMNE--SNVVSWT--SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAV 199 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 199 (838)
.+.|+++.|...|.++.+ |+....- .....+...|++++|...++++.+... -+...+..+...+.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHH
Confidence 455666666666655543 2221111 123445555666666666666555431 13344555555555556666666
Q ss_pred HHHHHHHHhCCCCch-------hHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHH
Q 046257 200 QVHTMVIKNGGEVVT-------SVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFN 269 (838)
Q Consensus 200 ~l~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~ 269 (838)
.++..+.+.+..++. .++..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666555432211 1233334444444555666666666654 356667777777888888888888887
Q ss_pred HhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCee
Q 046257 270 NMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVV 348 (838)
Q Consensus 270 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~ 348 (838)
+..+. .|+.. ..++.+....++.+.+.+..+...+.. +.|......+...+.+.+++++|.+.|+...+ .|+..
T Consensus 288 ~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 288 DGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 77653 34432 122333345577777777777777664 45666777888888888888888888888754 46767
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 349 SWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
.+-.+...+.+.|+.++|.+++++-..
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888888876643
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.9e-11 Score=89.14 Aligned_cols=50 Identities=32% Similarity=0.631 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
||+++||++|.+|+++|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999974
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=6.7e-10 Score=118.81 Aligned_cols=264 Identities=15% Similarity=0.171 Sum_probs=205.6
Q ss_pred CHHHHHHHHHhcCCC--Ccc-hHHHHHHHHHhcCCchHHHHHHHHhhcCC-C-CCCHhhHHHHHHHhcCChhhHHHHHHH
Q 046257 428 ILDEAAKVFELIDEK--DIV-AWSAMLAGYAQIGDTEGAVKIYRQLTSEG-V-KPNEFTFSSVINACTAPSAAVEQGKQF 502 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~~~~~~ 502 (838)
+..+|...|..+++. |+. ....+..+|-..+++++|.++|+...+.. . .-+..+|+++|--.- ..++. ..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~L--s~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVAL--SY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHH--HH
Confidence 467899999887653 443 23446788889999999999999987631 1 124467777764321 11211 11
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 503 HACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--R-DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
...-+-..-+..+.+|-++.+.|+-+++.+.|++.|++... | ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22212222355789999999999999999999999998873 3 568888888889999999999999999887 777
Q ss_pred Ch-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 580 DG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 580 d~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
++ ..|-++...|.+.++++.|.-.|+.++ .+.|. .....++...+-+.|+.|+|+++++++
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A-------------- 549 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKA-------------- 549 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH--------------
Confidence 75 478888999999999999999999887 56774 556777888999999999999999988
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHH
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEE 737 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 737 (838)
+-++|.|+-.-+..+.++...|++++|...+++.++- -|+-.-++..+.+
T Consensus 550 ----~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgk 599 (638)
T KOG1126|consen 550 ----IHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGK 599 (638)
T ss_pred ----HhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHH
Confidence 7889999999999999999999999999999999862 3566667777777
Q ss_pred HHHHHHHc
Q 046257 738 LSTRLKDA 745 (838)
Q Consensus 738 l~~~~~~~ 745 (838)
+.++|+..
T Consensus 600 i~k~~~~~ 607 (638)
T KOG1126|consen 600 IYKRLGNT 607 (638)
T ss_pred HHHHHccc
Confidence 77766543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.3e-08 Score=99.20 Aligned_cols=354 Identities=15% Similarity=0.159 Sum_probs=214.3
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhH--HHH
Q 046257 209 GGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTF--VSV 286 (838)
Q Consensus 209 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~l 286 (838)
+...|.+.+-...-.+-+.|....|+..|-.....-+.-|.+-+...--..+.+.+..+. .|...|..-+ -.+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHH
Confidence 335555555444555666788888888887766555555655444322222222222211 1122221111 123
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCC------eeehHHHHHHHHHc
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKD------VVSWTAMISGHLQN 360 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~~li~~~~~~ 360 (838)
..++......+++.+=.......|++.+...-+-...++-...++++|+.+|+++. ..| ..+|..++ |+++
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~-knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIR-KNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcchhHHHHhHHH--HHHh
Confidence 44555666777788877888888877777766666677777788888888888887 323 33444433 2222
Q ss_pred CChHHHHHHHHHhhh--cCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 361 GAIDLAVNFFCQMTR--EGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 361 g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
.+.. +.++.+-.. ...+| .++..+.+-|+-.++.++|...|+.
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~---------------------------------ETCCiIaNYYSlr~eHEKAv~YFkR 355 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRP---------------------------------ETCCIIANYYSLRSEHEKAVMYFKR 355 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCc---------------------------------cceeeehhHHHHHHhHHHHHHHHHH
Confidence 2211 111111110 11222 2334566778888999999999998
Q ss_pred cCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch
Q 046257 439 IDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL 515 (838)
Q Consensus 439 ~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (838)
..+- -...|+.|..-|....+...|++-++...+-. +.|-..|-.
T Consensus 356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG------------------------------- 403 (559)
T KOG1155|consen 356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG------------------------------- 403 (559)
T ss_pred HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh-------------------------------
Confidence 7653 45689999999999999999999999887631 223333433
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACT 592 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 592 (838)
|..+|.-.+...-|+-.|++.. +.|...|.+|..+|.+.++.++|++.|......| +.+...+..|...+-
T Consensus 404 -----LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye 477 (559)
T KOG1155|consen 404 -----LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYE 477 (559)
T ss_pred -----hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHH
Confidence 4445555566666666676554 4477778888888888888888888887777765 335567777777777
Q ss_pred ccCCHHHHHHHHHHHHhcC---C-ccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEH---H-IYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~---~-~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+.++.++|.++|..-++.. | +.| ....-.-|..-+-+.+++++|.......
T Consensus 478 ~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7778888877776655422 1 222 1122222445566777777777765543
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.1e-08 Score=100.12 Aligned_cols=306 Identities=15% Similarity=0.163 Sum_probs=222.2
Q ss_pred HcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 359 QNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 359 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
-+.+.++|.++|-+|.+. |..||-. --+|.+.|.+.|.+|.|.++.+.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~----d~~t~e~----------------------------~ltLGnLfRsRGEvDRAIRiHQ~ 94 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE----DPETFEA----------------------------HLTLGNLFRSRGEVDRAIRIHQT 94 (389)
T ss_pred hhcCcchHHHHHHHHHhc----CchhhHH----------------------------HHHHHHHHHhcchHHHHHHHHHH
Confidence 357889999999999873 4444421 13688889999999999999988
Q ss_pred cCCCCcch-------HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcC
Q 046257 439 IDEKDIVA-------WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL 511 (838)
Q Consensus 439 ~~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 511 (838)
+.++...| .-.|..-|...|-++.|.++|..+.+.|.. -......++.-|-.. ...+.|...-..+.+.+-
T Consensus 95 L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~ 172 (389)
T COG2956 95 LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQAT-REWEKAIDVAERLVKLGG 172 (389)
T ss_pred HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCC
Confidence 76543333 344667778889999999999998875422 223455566666666 888888888887777665
Q ss_pred CCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hh
Q 046257 512 NNA----LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GI 582 (838)
Q Consensus 512 ~~~----~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~ 582 (838)
.+. ...|--|...+.-..+.+.|..++.+.. ++++..--.+...+...|++++|++.++...+. .|+ ..
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~e 250 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSE 250 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHH
Confidence 443 2334456666666788999999998876 334444445667888999999999999999995 455 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII-NRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~-~~m~~~~~~~~w~~ll~~c~~ 661 (838)
+...|..+|.+.|+.+++...+..+.+. .+..+.-..+.+.-....-.++|...+ +...-+|+...+..|+..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~--- 324 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY--- 324 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh---
Confidence 6778889999999999999999988743 456666666666655555556666655 445556766555555443
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEee
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLA 720 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~ 720 (838)
.-. =+..|+|++...+.+.|....++..|.+..-..+-++|+|.-
T Consensus 325 ---~l~-----------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 325 ---HLA-----------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred ---hhc-----------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 111 134578999999999999999999999999999999999873
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=5.6e-11 Score=123.68 Aligned_cols=255 Identities=15% Similarity=0.064 Sum_probs=98.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCc-ccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 046257 48 RLLFEYCRDSLHQEALNLFLGIRRLGLPLFG-STLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRT 126 (838)
Q Consensus 48 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 126 (838)
.+...+.+.|++++|++++.+......+|+. .-|..+...+...++.+.|.+.++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456777899999999999665444323443 34444445566778999999999998877643 66677777777 688
Q ss_pred CChHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 046257 127 NNVEDGRRVFDDMNE--SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEG-IKPNSFTFSTVLGVLADEGIVATAVQVHT 203 (838)
Q Consensus 127 g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 203 (838)
+++++|.+++...-+ ++...|..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876543 566678888888999999999999998876533 34566677778888888999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh
Q 046257 204 MVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME---DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR 280 (838)
Q Consensus 204 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 280 (838)
.+++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 998886 4467788888888888888888777776543 3466777888888888888888888888876531 2244
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHH
Q 046257 281 STFVSVIKLCATTKELRLARQLHSQV 306 (838)
Q Consensus 281 ~t~~~ll~~~~~~~~~~~a~~~~~~~ 306 (838)
.+...+..++...|+.++|.++..++
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 45555566666666666666655544
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=6.4e-06 Score=88.04 Aligned_cols=513 Identities=15% Similarity=0.175 Sum_probs=303.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHH--------hccCCChhhHHHHHHHHHHhCCCCCh
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKT--------CGCLFDHVFGRQVHCECVKSGFARDV 113 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~g~~~~~ 113 (838)
++-+|-.-|..-.. .-..+-.-+|++..+. ++-+-..|..-|++ |--...+......|+..+... ..-+
T Consensus 26 svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-Hkmp 102 (835)
T KOG2047|consen 26 SVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKMP 102 (835)
T ss_pred hHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcCC
Confidence 45567777765443 2233344556665543 22233333333321 111111222223333322211 1345
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCC-----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNE-----SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGV 188 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 188 (838)
.+|-..+....+.|++..-+..|+.... .....|...+.-....|-++-++.+|++..+- ++..-.--+.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 6777788888889999999999987543 23346888888888899999999999998763 33335566777
Q ss_pred HhcCCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHhHcCCC---hhHHHHHHhcCCCC--C--cchHHHHHHHH
Q 046257 189 LADEGIVATAVQVHTMVIKNG------GEVVTSVCNALISMYLKSKM---VRDARAVFDGMEDR--D--SITWNSMVAGY 255 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g------~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~m~~~--~--~~~~n~li~~~ 255 (838)
++..+++++|.+.+..++... .+.+-..|.-+-+..++.-+ --....++..+..+ | ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 788899999999888776431 14455566666666665432 23344555555542 3 34689999999
Q ss_pred HhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHcCCChHHH
Q 046257 256 VTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI-DFDHNIRTGLMVAYSKCGKMEDA 334 (838)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A 334 (838)
.+.|.+++|.++|++-... ..+..-|+.+..+|++...-..+..+- ...+.+. .-+.. +++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHH
Confidence 9999999999999887654 234444666666666543322222211 0111111 11111 12222
Q ss_pred HHHHHhccc--------------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHH
Q 046257 335 SKIFSMMRE--------------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 335 ~~~f~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 400 (838)
..-|+.+.+ ..++..|..-+.. ..|+..+-...|.+.... +.|-...
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~---------------- 383 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCC----------------
Confidence 222333221 2344455544332 346667777777776653 3332211
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcch-------HHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 401 HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVA-------WSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
..-...|..+.+.|-..|+++.|+.+|++...-+-.+ |..-...=.++.+++.|+++.++....
T Consensus 384 ---------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 384 ---------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred ---------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 1122355678899999999999999999988754443 444444445677889999988877543
Q ss_pred CCCCC-----------------HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 474 GVKPN-----------------EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 474 g~~p~-----------------~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
.-.|. ...|+..++---.. |.++..+.++..+++..+.....+.| ..-.+-...-++++.+
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~-gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL-GTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFK 532 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHH
Confidence 21211 11222222222223 77788888888888877654443333 1223445667888999
Q ss_pred HHHhcC----CCCH-HHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCChhHHHHHHHHH--hccCCHHHHHHHHHH
Q 046257 537 VFKRQR----KRDL-VSWNSMICGYAQH---GHTKKALEVFKEMRRQDLEFDGITFIGVITAC--THAGLVDEGQQYFDI 606 (838)
Q Consensus 537 ~f~~~~----~~~~-~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~ 606 (838)
++++.. -|++ ..||..+.-+.+. -..+.|..+|++.++ |.+|...-+.-|+.|- -.-|....|..++++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 998765 4554 4688877655432 257899999999998 7777765444444432 345888888888887
Q ss_pred HH
Q 046257 607 MV 608 (838)
Q Consensus 607 m~ 608 (838)
..
T Consensus 612 at 613 (835)
T KOG2047|consen 612 AT 613 (835)
T ss_pred HH
Confidence 65
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.20 E-value=4.5e-09 Score=115.31 Aligned_cols=280 Identities=9% Similarity=-0.052 Sum_probs=175.0
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChh-HHHHHHHHHHhCCChHHHHHHHccCCC--CCc--chHHHHHHHHHhCCCchHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVN-VSTSLVDLYMRTNNVEDGRRVFDDMNE--SNV--VSWTSLLSGYARNKMNDRVL 164 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~--~~~~~li~~~~~~g~~~~A~ 164 (838)
..|++..|.+......+.. |+.. .+-....++.+.|+.+.|.+.|....+ |+. ...-+....+.+.|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777666554443 2222 222233455666777777777766432 332 12223355666677777777
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhH-------HHHHHHHhHcCCChhHHHHHH
Q 046257 165 ELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSV-------CNALISMYLKSKMVRDARAVF 237 (838)
Q Consensus 165 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~-------~~~li~~y~~~g~~~~A~~~f 237 (838)
..++.+.+... -+...+..+...+...|+++.+.+++..+.+.+..+.... +..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777766542 1444566666667777777777777777777653322211 111121112223344555566
Q ss_pred hcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHH-HHHH--HHhccCcHHHHHHHHHHHHHhCC
Q 046257 238 DGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFV-SVIK--LCATTKELRLARQLHSQVLKNGI 311 (838)
Q Consensus 238 ~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~--~~~~~~~~~~a~~~~~~~~~~g~ 311 (838)
+..++ .+...+-.+...+...|+.++|.+++++..+. .||..... .++. .....++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 66664 36777888888888899999999988888765 34443210 1222 2234577778888887777663
Q ss_pred CCCh--hHHHHHHHHHHcCCChHHHHHHHHh--cc-cCCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 312 DFDH--NIRTGLMVAYSKCGKMEDASKIFSM--MR-EMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 312 ~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~--~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+-|. ....++...+.+.|++++|.+.|+. .. ..|+...+..+...+.+.|+.++|.+++++-..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344 5667888899999999999999993 42 267777788888999999999999999987643
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=3.1e-07 Score=94.28 Aligned_cols=209 Identities=14% Similarity=0.196 Sum_probs=156.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh-------hHHHHHHHh---cCChhhHHHHHHHHHHHHHhcCC
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF-------TFSSVINAC---TAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
|-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ... .+.+..++++...++ -++
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~-ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA-EDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHh-hcC
Confidence 5567777788777889999999999998864 555321 111111111 122 678888999988888 345
Q ss_pred CchhHHHHHHHHHH----hcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHH
Q 046257 513 NALCVSSALVTMYS----KKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFI 585 (838)
Q Consensus 513 ~~~~~~~~li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~ 585 (838)
...+++.-+--||+ ++-++..|.+++.... .|..-++...|..=.+.++++....+|++.++ ..|. -.+|.
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 55667766666665 6789999999998776 56777888888888899999999999999999 6665 57888
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM-PFAASATVWRTVL 656 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll 656 (838)
.....-...|+.|.|..+|+..+..-.+......+.+.||.=...|.++.|..++++. ...+...+|-++-
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 8887778899999999999999854333333345788888889999999999999876 2345566787763
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=3.1e-11 Score=87.95 Aligned_cols=50 Identities=34% Similarity=0.721 Sum_probs=48.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 046257 142 SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=4.3e-09 Score=112.73 Aligned_cols=281 Identities=14% Similarity=0.104 Sum_probs=181.8
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcCCChH-HHHHH
Q 046257 261 HMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI--DFDHNIRTGLMVAYSKCGKME-DASKI 337 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~-~A~~~ 337 (838)
..+|+.+|...... +.-+......+-++|...+++++++.+|+.+.+... .-+..+|.+.+.-+-+.=.+. -|..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555555553322 222223344455556666666666666666655431 224445555443332221111 12233
Q ss_pred HHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCC-CcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchh
Q 046257 338 FSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRP-NGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVG 416 (838)
Q Consensus 338 f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (838)
.+.. ...+.+|-++..+|.-+++.+.|++.|++... +.| ..++|
T Consensus 414 i~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYay------------------------------- 458 (638)
T KOG1126|consen 414 IDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAY------------------------------- 458 (638)
T ss_pred HhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhh-------------------------------
Confidence 3332 24567888888888888888888888887765 233 23333
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCcchHH---HHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCCh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKDIVAWS---AMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPS 493 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 493 (838)
+-+..-+.....+|.|...|+.....|...|| -+...|.+.++++.|.-.|++..+ +.|......
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~---------- 526 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVIL---------- 526 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHH----------
Confidence 33444455667788888888877766655444 467788889999999888888775 455543222
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
..+..+|-++|+.|+|+.+|++.. .+|+.+---.+..+...++.++|+..++
T Consensus 527 -------------------------~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 527 -------------------------CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred -------------------------hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 123345778899999999998765 5677776667777888899999999999
Q ss_pred HHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCch
Q 046257 571 EMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 571 ~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-|. .+.|....
T Consensus 582 eLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~---~ldpkg~~ 626 (638)
T KOG1126|consen 582 ELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL---DLDPKGAQ 626 (638)
T ss_pred HHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh---cCCCccch
Confidence 9999 78886 457777788999999999999998876 34555443
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=3.4e-06 Score=90.09 Aligned_cols=516 Identities=12% Similarity=0.128 Sum_probs=277.1
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 046257 45 EYNRLLFEYCRDSLHQEALNLFLGIRRL-GLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLY 123 (838)
Q Consensus 45 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 123 (838)
.|-.-+.-+...|+...-...|++.+.. -+.-....|...++.....+-++.+..++++-++.. +...+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 3444445555666666666666665443 223334456666776666777777777777665542 33356666777
Q ss_pred HhCCChHHHHHHHccCCCC----------CcchHHHHHHHHHhCCCchHHHH---HHHHHHHCCCCCCh--hhHHHHHHH
Q 046257 124 MRTNNVEDGRRVFDDMNES----------NVVSWTSLLSGYARNKMNDRVLE---LFHRMQVEGIKPNS--FTFSTVLGV 188 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~---l~~~m~~~g~~p~~--~t~~~ll~~ 188 (838)
++.+++++|.+.+...... +-..|+-+-...+++.+.-..+. +++.+.. .-||. .-|.+|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence 7777777777777665431 22345555555444433222221 2222211 12332 235555666
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCC----------------------ChhHHHHHHhcCCC----
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSK----------------------MVRDARAVFDGMED---- 242 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g----------------------~~~~A~~~f~~m~~---- 242 (838)
|.+.|.++.|+.++++.+..- ..+.-++.+-+.|+... +++-...-|+.+..
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 666666666666666655442 12222222222332211 12222333333222
Q ss_pred -----------CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCCh------hhHHHHHHHHhccCcHHHHHHHHHH
Q 046257 243 -----------RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTR------STFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 243 -----------~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
.++..|..-+. ...|+..+-...|.+.... +.|-. ..|..+.+.|-..|+++.|+.+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 13444544333 3456677777777777653 23321 2466677778888999999999998
Q ss_pred HHHhCCCCC---hhHHHHHHHHHHcCCChHHHHHHHHhcccCCCe--------------------eehHHHHHHHHHcCC
Q 046257 306 VLKNGIDFD---HNIRTGLMVAYSKCGKMEDASKIFSMMREMKDV--------------------VSWTAMISGHLQNGA 362 (838)
Q Consensus 306 ~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~--------------------~~~~~li~~~~~~g~ 362 (838)
..+..++.- ..+|..-..+-.+..+++.|.++.+.....|.. ..|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 887654332 456666667777778888888888776432211 124444444444455
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE- 441 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~- 441 (838)
++....+|+++.+..+.......| ..-.+-...-++++.+++++-..
T Consensus 493 festk~vYdriidLriaTPqii~N--------------------------------yAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIIN--------------------------------YAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHH--------------------------------HHHHHHhhHHHHHHHHHHHcCCcc
Confidence 555555555555543322111111 01112233345666666654332
Q ss_pred ---CCc-chHHHHHHHHHh---cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc
Q 046257 442 ---KDI-VAWSAMLAGYAQ---IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA 514 (838)
Q Consensus 442 ---~~~-~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (838)
|++ ..|++.+.-+.+ .-.++.|..+|++..+ |.+|...-+.-++ |+.
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl--YA~----------------------- 594 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL--YAK----------------------- 594 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH--HHH-----------------------
Confidence 222 256665555544 2246666777766665 4444432222221 111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH---HH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQRKR-----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF---IG 586 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~---~~ 586 (838)
.=-+-|-...|.+++++.... -...||..|.--+..=-+....++|++..+ .-||...- .-
T Consensus 595 ---------lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 595 ---------LEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLR 663 (835)
T ss_pred ---------HHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHH
Confidence 112335666677777765421 235688888654443335566788888888 46775432 22
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
....-++.|.++.|+.++.--.+-....-+.+.|.+.=+-=.|-|+-+--.+++
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334457889999999999876543333334566777777778899844444443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=8e-08 Score=97.20 Aligned_cols=291 Identities=11% Similarity=0.016 Sum_probs=202.4
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKI 337 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 337 (838)
.|++.+|.++..+-.+.+-.| ...|..-..+.-+.|+.+.+-+++.++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888887766665443 2345666677778889999988888888775567778888888888899999988877
Q ss_pred HHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcch
Q 046257 338 FSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSV 415 (838)
Q Consensus 338 f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 415 (838)
.+++.+ ..++........+|.+.|++.+...++.+|.+.|+--|+..-.. ...+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 776643 56777888899999999999999999999999876554322100 0112
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..++. .|...
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~----~~l~~ 307 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI----PRLRP 307 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH----hhcCC
Confidence 23344433334444444456666664 356677788888999999999999999999888777733332 33344
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
.+....-+.+-..+.+.+- ++..+.+|...|.|.+.+.+|.+.|+... .++..+|+-+..+|.+.|+.++|.+.++
T Consensus 308 ~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 1233333333344444443 33777778888888888888888887654 6677888888888888888888888887
Q ss_pred HHHHcCCCC
Q 046257 571 EMRRQDLEF 579 (838)
Q Consensus 571 ~m~~~g~~p 579 (838)
+.+..-..|
T Consensus 386 e~L~~~~~~ 394 (400)
T COG3071 386 EALLLTRQP 394 (400)
T ss_pred HHHHHhcCC
Confidence 766443333
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.3e-07 Score=95.24 Aligned_cols=215 Identities=18% Similarity=0.225 Sum_probs=160.7
Q ss_pred HhcCCchHHHHHHHHhhcCC-CC-CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046257 455 AQIGDTEGAVKIYRQLTSEG-VK-PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE 532 (838)
Q Consensus 455 ~~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 532 (838)
-...++++|+.+|+++.+.. .+ -|..||+.+|-.-... ..+..--+....+ ..+. +.+...+.+-|+-.++-+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-skLs~LA~~v~~i--dKyR--~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-SKLSYLAQNVSNI--DKYR--PETCCIIANYYSLRSEHE 347 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-HHHHHHHHHHHHh--ccCC--ccceeeehhHHHHHHhHH
Confidence 34556777777777776642 11 1345666665432211 1111100111111 1222 344555677888899999
Q ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 533 SASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 533 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+|...|++.. +.-...|+.|..-|....+...|++-|+..++ +.| |...|-+|..+|.-.+...-|+-+|++..
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999876 34567899999999999999999999999999 666 67899999999999999999999999886
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
..+| |...|.+|.+.|.+.++++||++-+.+. +...--+..+|+.|+++|-..++.++
T Consensus 426 ---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra------------------i~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 426 ---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA------------------ILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred ---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH------------------HhccccchHHHHHHHHHHHHHHhHHH
Confidence 4567 5678999999999999999999999876 33333367899999999999999999
Q ss_pred HHHHHHHHhh
Q 046257 688 RARVRKLMND 697 (838)
Q Consensus 688 a~~~~~~m~~ 697 (838)
|...+++-.+
T Consensus 485 Aa~~yek~v~ 494 (559)
T KOG1155|consen 485 AAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.2e-07 Score=97.78 Aligned_cols=256 Identities=14% Similarity=0.101 Sum_probs=141.3
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHH
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIIL 389 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 389 (838)
..++.+...-.+-+...+++.+..++++.+.+ +.+...+..-|..+...|+..+-..+=.+|.+. -|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP--------- 309 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YP--------- 309 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CC---------
Confidence 44555666666777777888888888877763 234444555667777778777776666666653 12
Q ss_pred hhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHH
Q 046257 390 TAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGDTEGAVKI 466 (838)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l 466 (838)
....+|-++.--|...|+..+|++.|.....-|. ..|-.....|+-.|..++|+..
T Consensus 310 ---------------------~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 310 ---------------------SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred ---------------------CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHH
Confidence 2223334566667777899999999987665433 5788889999999999999888
Q ss_pred HHHhhcC--C-CCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 046257 467 YRQLTSE--G-VKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK 543 (838)
Q Consensus 467 ~~~m~~~--g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~ 543 (838)
+...-+- | -.|.-+ ..+ -|... ++++.+.+++..+.... +.|+.+.+-+.-++-+.+.+.+|...|+....
T Consensus 369 Y~tAarl~~G~hlP~LY--lgm--ey~~t-~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 369 YFTAARLMPGCHLPSLY--LGM--EYMRT-NNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHhccCCcchHHH--HHH--HHHHh-ccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 7665431 1 112111 111 12222 44455555544444322 33444444444444444555555555543320
Q ss_pred ----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 544 ----------RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 544 ----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
.-..+|+.|..+|.+.+..++|+..|++.+. ..| |..|+.++.-.+...|+++.|...|...
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 0112344444455555555555555555444 222 2334444444444445555555544443
No 58
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.9e-05 Score=88.33 Aligned_cols=564 Identities=14% Similarity=0.160 Sum_probs=288.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCC--CCcchHHHH-----HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMNE--SNVVSWTSL-----LSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGV 188 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 188 (838)
+..+.+.+.+.|-+..|.+.+.++.. +.++ .+.+ +-.|.-.-.++++++.++.|...+++-|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45566777888999999988887764 2222 1111 22344444678899999999888888887776666666
Q ss_pred HhcCCChHHHHHHHHHHHH-----------hCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---------------
Q 046257 189 LADEGIVATAVQVHTMVIK-----------NGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--------------- 242 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~-----------~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------------- 242 (838)
|...=..+...++|+.... -++..|+.+.-..|.+-++.|++.+.+++..+-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 5544444444555544322 13466777778889999999999999888765431
Q ss_pred C----------------CcchH------HHHHHHHHhCCChHHHHHHHHHhhhCCCC-----------CChhhHHHHHHH
Q 046257 243 R----------------DSITW------NSMVAGYVTNELHMEAFETFNNMGLAGAE-----------LTRSTFVSVIKL 289 (838)
Q Consensus 243 ~----------------~~~~~------n~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~~ 289 (838)
+ |.+.| -..|..|++.-++...-.+.-.+...... -..+...-+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 0 11221 12345555543332222222211111000 001112234445
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHH-H---HHH-----hcccCCCee----e-------
Q 046257 290 CATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDAS-K---IFS-----MMREMKDVV----S------- 349 (838)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~---~f~-----~~~~~~~~~----~------- 349 (838)
+.+.+++..-..+++..+..| ..|..++|+|...|...++-.+-. + .++ +.-+.+|+. .
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 566777777778888888888 468899999999988776544321 0 111 111122211 1
Q ss_pred --------hHHHH----HHHHHcCCh---HHHH--------HHHHHhhhcCCC--CCcccHHHHHhhCCCCChh-HHHHH
Q 046257 350 --------WTAMI----SGHLQNGAI---DLAV--------NFFCQMTREGVR--PNGFTYSIILTAQPAVSPF-QVHAH 403 (838)
Q Consensus 350 --------~~~li----~~~~~~g~~---~~A~--------~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~-~~~~~ 403 (838)
=|+|. ..+.+..+. .+.+ .+.++....++. .|+...+..++|+-..+-. ++...
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 12332 223333332 2222 344444443332 1222222223332222211 33333
Q ss_pred HHHhhccCCcc-----hhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC
Q 046257 404 IIKTNYEKSFS-----VGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN 478 (838)
Q Consensus 404 ~~~~~~~~~~~-----~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 478 (838)
+.+--++++.+ ..|.|+-.-.|. +.....+..+++..-|.. .+......++-++||..+|++..
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~------- 1075 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD------- 1075 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc-------
Confidence 33322333222 222222222221 112222222222221111 11222333444455555554432
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQ 558 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 558 (838)
.+....+.|++ .-++++.|.+.-++..+|. .|..+..+-.+
T Consensus 1076 ----------------------------------~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1076 ----------------------------------MNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQ 1116 (1666)
T ss_pred ----------------------------------ccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHh
Confidence 12222222332 3456777777766665543 47778888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMD 638 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~ 638 (838)
.|...+|++-|-+. -|+..|..++.++++.|.+++-.+++...+ +..-+|.++ +.|+-+|++.|++.|-++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 88888887776321 245668888888888888888888776554 334445444 467777888888888777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHH------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEEC
Q 046257 639 IINRMPFAASATVWRTVLAACR------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVK 712 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~ 712 (838)
++. .||..-...+=.-|- .-++-=.+.+.|..|+..+...|.+..|...-++......-|+-+...|+-+
T Consensus 1188 fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1188 FIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred Hhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchh
Confidence 775 233322222222221 0001112556777888888888888888776666555444444443333211
Q ss_pred CEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046257 713 NKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYK 748 (838)
Q Consensus 713 ~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 748 (838)
.|.....+.-..----+.|++|...-++.||-
T Consensus 1264 ----EFrlAQiCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1264 ----EFRLAQICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred ----hhhHHHhcCceEEEehHhHHHHHHHHHhcCcH
Confidence 11100000000000025677777766777764
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2.1e-07 Score=91.91 Aligned_cols=356 Identities=11% Similarity=0.112 Sum_probs=194.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHHH-HHHHHcCChH
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAMI-SGHLQNGAID 364 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li-~~~~~~g~~~ 364 (838)
+...-+.++-+.-..+++.+... ..-..+|..+.-..-.+++|..++.++.. .|+-...|.-+ -+|.+..-++
T Consensus 128 fhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 128 FHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 33334445555555555444322 12222333333334456667777666542 33444444433 3455666666
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh--HHHHHHHHhhccCCcchhhHHHHHHHHc-----CCHHHHHHHHH
Q 046257 365 LAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF--QVHAHIIKTNYEKSFSVGTALLNAYVKK-----GILDEAAKVFE 437 (838)
Q Consensus 365 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~ 437 (838)
-+.+++.--.+. -|| .|+..-+.+|....-+ .....- +..+..+....-..+.-.++. ..-+.|.+++-
T Consensus 203 vsqevl~vYL~q--~pd-StiA~NLkacn~fRl~ngr~ae~E-~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP 278 (557)
T KOG3785|consen 203 VSQEVLKVYLRQ--FPD-STIAKNLKACNLFRLINGRTAEDE-KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLP 278 (557)
T ss_pred hHHHHHHHHHHh--CCC-cHHHHHHHHHHHhhhhccchhHHH-HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhch
Confidence 666665554442 233 2333334444332221 000000 000000000000111111221 12244555544
Q ss_pred hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHh-----cCChhhHHHHHHHHHHHHHhcCC
Q 046257 438 LIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINAC-----TAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 438 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-----~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
.+...=+..--.++--|.+.++..+|..+.+++.- ..|-......+..+- ... ..+..+++++..+-.++..
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr-eHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR-EHLKIAQQFFQLVGESALE 355 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH-HHHHHHHHHHHHhcccccc
Confidence 33322222333455568889999999999887753 456555555554432 122 4566677888877777766
Q ss_pred CchhHH-HHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 046257 513 NALCVS-SALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV 587 (838)
Q Consensus 513 ~~~~~~-~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 587 (838)
-|..-. -++...+.-.-++++.+-.++.+. ..|...+| +..+++..|++.+|.++|-+.....++ |..+|.++
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHH
Confidence 554333 345555556667888888877776 44555554 778899999999999999877654444 55666655
Q ss_pred H-HHHhccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHH
Q 046257 588 I-TACTHAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYSRAGMLEKAMDIINRM-PFAASATVWRTVLAACR 660 (838)
Q Consensus 588 l-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll~~c~ 660 (838)
+ .++.+.|..+-||.++-.+. -..+.. ....+..-+.++|.+--|-+.|+.+ ...|+.--|..--+||.
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACA 505 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHH
Confidence 4 56789999999999886653 111222 2333457788889886555554443 23788889999999997
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.8e-07 Score=91.65 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=147.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhCCChHH
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARD---VNVSTSLVDLYMRTNNVED 131 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~ 131 (838)
-+.++++|+++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|+.+.++.--+. ....-.|-.-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4678899999999998742 22333455667778889999999999998876522111 1234455667888999999
Q ss_pred HHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHH
Q 046257 132 GRRVFDDMNESNV---VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSF----TFSTVLGVLADEGIVATAVQVHTM 204 (838)
Q Consensus 132 A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~l~~~ 204 (838)
|+.+|..+.+-.. .+.-.|+..|-+..+|++|++.-+++.+.+-.+... -|.-+........+++.|+.++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 9999998876333 356678899999999999999999888766554432 234444455556677777777777
Q ss_pred HHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 205 VIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSI----TWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 205 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
+.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +-..+..+|.+.|+.++....+.++.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77665 334444455556666667777777766666654432 3445556666666666666666666554
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=4.4e-08 Score=98.81 Aligned_cols=195 Identities=18% Similarity=0.208 Sum_probs=152.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
..+..+...|...|++++|.+.|++..+. .|+. ...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~-----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDD-----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc-----------------------------------HHHHHHHHHH
Confidence 45677788888899999999999887653 2332 2233345566
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
|...|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+....|. ...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 788899999999988765 44667888889999999999999999999987433333 34566677788899999999
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
...++...+. .| +...+..+...+...|++++|.+.+++. ++..|.++..+..++.++
T Consensus 155 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 155 EKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERY------------------QQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHH
Confidence 9999988743 34 3557788889999999999999999987 455677888888899999
Q ss_pred HhcCCchHHHHHHHHHhh
Q 046257 680 AATGHWQERARVRKLMND 697 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~ 697 (838)
...|++++|..+.+.+..
T Consensus 214 ~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 214 RALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHhhHHHHHHHHHHHHh
Confidence 999999999998888764
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=2.1e-08 Score=101.24 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=139.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITA 590 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 590 (838)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+.+ +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566778889999999999999999765 3457788999999999999999999999999843 2235667778888
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
+...|++++|.++++..............+..+...+.+.|++++|.+.+++. ++.+|+++.
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~ 170 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA------------------LQIDPQRPE 170 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCcCChH
Confidence 99999999999999999843222223456777889999999999999999987 677898999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.+..++.+|...|++++|.+.+++..+.
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=3.3e-06 Score=90.86 Aligned_cols=227 Identities=12% Similarity=0.161 Sum_probs=133.2
Q ss_pred HHHHHHHhCCChHHHHHHHccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMN--ESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV 195 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 195 (838)
+-|+.|.+.|....|.+.-..-. ..|......+..++.+..-++.|=.+|+.+.. +...+..+.+-..+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 45677888888777766543221 23444445555555555555666666665532 11222333333333
Q ss_pred HHHHHHHHHHHHhCCCCchhH-HHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 196 ATAVQVHTMVIKNGGEVVTSV-CNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 196 ~~a~~l~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
.+|.++-+.. ++..++. -..--..+...|+++.|..-|-+.. ..-.-|.+......+.+|+.+++.++..
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 4444433222 1111111 1122223344566666665553321 1122345566778888999988888765
Q ss_pred CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccC-CCeeehHHH
Q 046257 275 GAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREM-KDVVSWTAM 353 (838)
Q Consensus 275 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~l 353 (838)
. .-.-.|..+...|+..|+++.|+++|-+. ..++.-|+||.+.|++++|.++-.+...+ ..+.+|-+-
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 3 22345777888899999999999888542 34567789999999999999988877622 233446666
Q ss_pred HHHHHHcCChHHHHHHHHHh
Q 046257 354 ISGHLQNGAIDLAVNFFCQM 373 (838)
Q Consensus 354 i~~~~~~g~~~~A~~l~~~m 373 (838)
..-+-++|++.+|.++|-.+
T Consensus 831 aedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHhHHhhcchhhhhheeEEc
Confidence 66677788888888877544
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.9e-07 Score=92.33 Aligned_cols=114 Identities=11% Similarity=0.245 Sum_probs=86.3
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------hhHHH--HHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-------GITFI--GVITAC 591 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~--~ll~a~ 591 (838)
+.-|.++++++...|++.. +..+..||-....+...+++++|++.|+...+ +.|+ ..++. +++-.
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~- 513 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVL- 513 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhh-
Confidence 3457778999999998876 34567788888889999999999999999888 5665 11121 12211
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.-.+++.+|.++++... .+.|..+ .|..|..+....|++++|+++|++.
T Consensus 514 qwk~d~~~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 514 QWKEDINQAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred chhhhHHHHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12488999999999887 4566543 6899999999999999999999975
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.97 E-value=6e-07 Score=90.98 Aligned_cols=292 Identities=11% Similarity=-0.003 Sum_probs=181.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHH
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRR 134 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 134 (838)
-.|+|.+|.++..+-.+.+-. ....|..-.++.-+.|+.+.+-....++.+..-.++..+.-.........|+++.|+.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 367777777777765554422 2233455555666667777777777766665445555566666666667777777776
Q ss_pred HHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 046257 135 VFDDMN---ESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211 (838)
Q Consensus 135 ~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~ 211 (838)
-.++.. .++........+.|.+.|++.+...+...|.+.|+--|... .++
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH----------
Confidence 665543 35566677777777777777777777777777665433211 000
Q ss_pred CchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHH
Q 046257 212 VVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIK 288 (838)
Q Consensus 212 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 288 (838)
...+++.+++-....+..+.-...++..+. .++..--+++.-+.+.|+.++|.++..+-.+.+..|+.. .+-
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 012333344433333334443444444443 244555566666777777777777777776666555522 223
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHHHHHHHHcCChHHHH
Q 046257 289 LCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAMISGHLQNGAIDLAV 367 (838)
Q Consensus 289 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 367 (838)
.+.+.++.+.-.+..++-.+.- +.++..+.+|-..|.+.+.+.+|...|+.... .++..+|+-+..+|.+.|+.++|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455666665555555555442 34457788888888899999999888887643 678888999999999999999998
Q ss_pred HHHHHhhhcCCCC
Q 046257 368 NFFCQMTREGVRP 380 (838)
Q Consensus 368 ~l~~~m~~~g~~p 380 (838)
+.+++-...-..|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 8888776543333
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=4.5e-05 Score=83.82 Aligned_cols=489 Identities=12% Similarity=0.046 Sum_probs=278.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHh---ccCCChhhH-------------------HHH----HHHHHHhC
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTC---GCLFDHVFG-------------------RQV----HCECVKSG 108 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~~~~~g 108 (838)
..+..++++.-+.+....+.+.+..++..+...+ ...++.++. ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777766666666666555554433 223334333 111 11112223
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-hhhHHH
Q 046257 109 FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPN-SFTFST 184 (838)
Q Consensus 109 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ 184 (838)
+..|+.+|..|.-+..++|+++.+.+.|+.... .....|+.+-..|...|....|+.+.+.-....-.|+ ...+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 456788888888888889999999999987543 3445788888888888888888888877654332243 333333
Q ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 046257 185 VLGVLA-DEGIVATAVQVHTMVIKNGG----EVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNE 259 (838)
Q Consensus 185 ll~~~~-~~g~~~~a~~l~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g 259 (838)
.-+.|. +.+.++++...-..++.... ......+-.+.-+|...- ....+|.- +..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~ 458 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDA 458 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHH
Confidence 334443 44566666665555554210 011111222221221100 01111110 111
Q ss_pred ChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 260 LHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 260 ~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
...++++.+++-.+.+ -.|+...|.++- ++..++++.|.+...+.++.+-..+...+..|.-.+.-.+++.+|..+.
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 2356777777766543 455555555554 4456788889988888888877788888888888888888888888887
Q ss_pred Hhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc--CCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcc
Q 046257 339 SMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE--GVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFS 414 (838)
Q Consensus 339 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~ 414 (838)
+...+ ..|-+....-+..-..-++.++++.....+..- ...|
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~---------------------------------- 582 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG---------------------------------- 582 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------------------------------
Confidence 76542 112222222222233356777777776666541 0000
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh-hHHHHHHH
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE-----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF-TFSSVINA 488 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a 488 (838)
....|+-....+.+..+.- .+.+.-..-+.+.++ -+.+.+..-.. |...-+.|... ++...
T Consensus 583 --------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~--- 649 (799)
T KOG4162|consen 583 --------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLL--- 649 (799)
T ss_pred --------HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHH---
Confidence 0001111112222222210 111111111111111 00000000000 11111222211 11000
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
...|....+.+.+.+..++|...+.+.. .-....|......+...|+.++|
T Consensus 650 --------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 650 --------------------------QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred --------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHH
Confidence 2345556677888888888887766655 23455677777788889999999
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHH--HHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 566 LEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQ--YFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~--~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
.+.|..... +.||++ +..++...+...|+..-+.. ++..+.+ +.| +.+.|-.+...+-+.|+.++|-+.|.
T Consensus 704 ~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 704 KEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999988 889975 57788888899997776666 8888873 345 56788889999999999999999998
Q ss_pred hC
Q 046257 642 RM 643 (838)
Q Consensus 642 ~m 643 (838)
..
T Consensus 779 aa 780 (799)
T KOG4162|consen 779 AA 780 (799)
T ss_pred HH
Confidence 65
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.3e-06 Score=88.32 Aligned_cols=262 Identities=11% Similarity=0.100 Sum_probs=139.3
Q ss_pred CCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHH
Q 046257 411 KSFSVGTALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVIN 487 (838)
Q Consensus 411 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 487 (838)
.+..+.-...+-+..++++.+..++++.+-+.|. ..+..-|..+...|+..+-..+=.+|.+. .+-...+|-++--
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3444444555666677777777777777765443 34445566677777776666666666552 1222344444433
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-HHHHHHHHHHHHHcCCh
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRD-LVSWNSMICGYAQHGHT 562 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~-~~~~~~li~~~~~~g~~ 562 (838)
-+-.. +...+|+..+......... =...|-++...|+-.|.-|.|...+.... .-. +..| +.--|.+.++.
T Consensus 321 YYl~i-~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMI-GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHh-cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence 33333 4455555555444332211 12233444444555555555444332211 000 1111 12234444555
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CccC----CCchHHHHHHHHHhcCCHHHH
Q 046257 563 KKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH-HIYP----TMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~y~~lv~~l~r~G~~~~A 636 (838)
+-|.+.|.+... +.|+ +...+-+.-...+.+.+.+|..+|+.....- .+.+ ...+++.|..+|-+.+++++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 555555555544 4443 3333333333344555555555555443110 0000 111244455555555555555
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 637 MDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+..+++. +.+.|+++.+|..++-+|...|+.+.|...+.+...
T Consensus 475 I~~~q~a------------------L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 475 IDYYQKA------------------LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHH------------------HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 5555554 889999999999999999999999999999987653
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.91 E-value=7.8e-06 Score=88.14 Aligned_cols=464 Identities=14% Similarity=0.133 Sum_probs=247.7
Q ss_pred hCCChHHHHHHHccCCC-CCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 046257 125 RTNNVEDGRRVFDDMNE-SNVV-SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVH 202 (838)
Q Consensus 125 ~~g~~~~A~~~f~~m~~-~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~ 202 (838)
..|+++.|...++...- |+.. .|-.+.......|+.--|.+ +++..|++.+++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaer----------------------cfaai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAER----------------------CFAAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHH----------------------HHHHHHHHHHHHHHH
Confidence 34666666666655432 3332 35555554444554443333 334445666666665
Q ss_pred HHHH-------HhC-CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 203 TMVI-------KNG-GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 203 ~~~~-------~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
+... +.| -..+.+-..+++.+.. ..+.+|+.+|-+-.. -..-|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~~--- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEAK--- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHhc---
Confidence 5432 122 1223333344444443 357777777753221 123456666677788877764432
Q ss_pred CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CCCeeehHHH
Q 046257 275 GAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKDVVSWTAM 353 (838)
Q Consensus 275 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~l 353 (838)
|.+.-...-.+-++++...|+-+.|-++ ..+..-..+-|..|.+.|....|.+....-.+ ..|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 2111111223344555555555554432 12222234567888888888777665322110 2344444444
Q ss_pred HHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcc-hhhHHHHHHHHcCCHHHH
Q 046257 354 ISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFS-VGTALLNAYVKKGILDEA 432 (838)
Q Consensus 354 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~Li~~y~~~g~~~~A 432 (838)
..++.+..-+++|=.+|+++..- | -.+..+.+...+.-.-.+.+..++..++ +-.+-.+-+...|.++.|
T Consensus 655 a~alik~elydkagdlfeki~d~----d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHDF----D-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhCH----H-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHH
Confidence 44555555555555555554320 0 0011111111110000111111111111 111223334455666666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCC
Q 046257 433 AKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 433 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
..-|-+... .-.-|.+-.....+.+|+.+++.++.... -.--|..+-+-|+.. ++++.+.+++...
T Consensus 726 inhfiea~~-----~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~-~dfe~ae~lf~e~------ 791 (1636)
T KOG3616|consen 726 INHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANK-GDFEIAEELFTEA------ 791 (1636)
T ss_pred HHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccc-hhHHHHHHHHHhc------
Confidence 655543311 11123444556778888888887776432 233455556667777 8888888776532
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKR--DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITA 590 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 590 (838)
..++--|+||.+.|++++|.++-++...| ....|-+-..-+-.+|++.+|.++|-... .||. .|..
T Consensus 792 ---~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqm 859 (1636)
T KOG3616|consen 792 ---DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQM 859 (1636)
T ss_pred ---chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHH
Confidence 24456789999999999999998887655 34567666777888999999988886542 3543 4566
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
|-+.|..+...++...-- | .--.++...+..-|-..|++.+|++-|-+..
T Consensus 860 ydk~~~~ddmirlv~k~h---~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~-------------------------- 909 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEKHH---G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG-------------------------- 909 (1636)
T ss_pred HHhhCcchHHHHHHHHhC---h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------------------------
Confidence 778888888777765321 1 1112344556677788888888888776552
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHH
Q 046257 671 IYVLLSNMYAATGHWQERARVRKL 694 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~ 694 (838)
-+-.-.|+|..+|.|++|.++-+.
T Consensus 910 d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 910 DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 133345667777777777666543
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.91 E-value=6.7e-06 Score=90.06 Aligned_cols=427 Identities=12% Similarity=0.078 Sum_probs=237.0
Q ss_pred CCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh-hHH
Q 046257 209 GGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS-TFV 284 (838)
Q Consensus 209 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~ 284 (838)
.+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+.. .+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999987654 345679999999999999999999988765443335444 344
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHcC----CC-------hHHHHHHHHhccc--CCC
Q 046257 285 SVIKLCA-TTKELRLARQLHSQVLKN--GI--DFDHNIRTGLMVAYSKC----GK-------MEDASKIFSMMRE--MKD 346 (838)
Q Consensus 285 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~----g~-------~~~A~~~f~~~~~--~~~ 346 (838)
..-+.|. +.+..+++..+-..++.. +. ......+..+.-+|... .. ..++.+.+++..+ ..|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444555 447777777766666652 11 11223333333333322 11 2233334444321 112
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK 426 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~ 426 (838)
....--+---|+..++.+.|++..++..+-+-.-+.. .|--|.-.+...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~-------------------------------~whLLALvlSa~ 526 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK-------------------------------AWHLLALVLSAQ 526 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH-------------------------------HHHHHHHHHhhh
Confidence 2111112223445556666666665555432222222 222333444455
Q ss_pred CCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 427 GILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 427 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
+++.+|+.+.+...+. |.+.-..-|..-..-++.++|+.....+..- --+...+...+. . +....-+.-.
T Consensus 527 kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~-g~~~~lk~~l 599 (799)
T KOG4162|consen 527 KRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----E-GKLLRLKAGL 599 (799)
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----h-hhhhhhhccc
Confidence 6666666665543321 1111111112222245555555555544320 000000000000 0 0000000000
Q ss_pred HHHHHhcCCCchhHHHH---HHHHHHhcCCHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 504 ACSIKAKLNNALCVSSA---LVTMYSKKGNIESASEVFKRQRKRD------LVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 504 ~~~~~~~~~~~~~~~~~---li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
... .......+.++.- ++..-.+.-..+.....+...+.|+ ...|......+.+.++.++|...+.+...
T Consensus 600 ~la-~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 600 HLA-LSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred ccC-cccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 000 0011111222222 2221111111122222222223333 23466777788899999999988888776
Q ss_pred cCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHH--HHhhCCCCCCHH
Q 046257 575 QDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMD--IINRMPFAASAT 650 (838)
Q Consensus 575 ~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~--~~~~m~~~~~~~ 650 (838)
+.|- +..|.-....+...|..+||.+.|.... -+.|+ +....++..++.+.|+-.-|.. ++..+
T Consensus 679 --~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da------- 746 (799)
T KOG4162|consen 679 --IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA------- 746 (799)
T ss_pred --cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-------
Confidence 4554 4455555566777899999999998776 45664 4567888899999997666666 77776
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 651 VWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 651 ~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|.++.+|+.|+.++.+.|+.++|...|....+
T Consensus 747 -----------lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 747 -----------LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred -----------HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 799999999999999999999999999999988754
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=9.5e-06 Score=80.54 Aligned_cols=94 Identities=19% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHH-HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccC
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKR---DLVSWNSMI-CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV-ITACTHAG 595 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g 595 (838)
+..+++..|++.+|+++|-.+..| |-.+|-+|+ .+|.+++.++-|-+++-++.. ..+..+..-+ .+-|-+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 444556666667777766666533 445555543 456666666666555433321 2233333333 33566666
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchH
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHY 620 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y 620 (838)
.+=-|.+.|+.+. .+.|+++.|
T Consensus 476 eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHhhhHHH---ccCCCcccc
Confidence 6666666666554 235665554
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=2.2e-07 Score=97.02 Aligned_cols=178 Identities=15% Similarity=0.098 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA 590 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 590 (838)
...+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3456666777888888888888887665 44677888888888888999999988888888 6776 4567777777
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHH--------
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP--FAASATVWRTVLAACR-------- 660 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~--~~~~~~~w~~ll~~c~-------- 660 (838)
+...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++.. ..|+...|. +....
T Consensus 142 l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~--~~~~~lg~~~~~~ 216 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWN--IVEFYLGKISEET 216 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHH--HHHHHccCCCHHH
Confidence 8888889999888888773 34543322222233456678888888886532 123322232 11111
Q ss_pred -----------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 661 -----------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 661 -----------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
-.++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 124567778899999999999999999999999887643
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1e-05 Score=85.94 Aligned_cols=416 Identities=13% Similarity=0.113 Sum_probs=208.8
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHH--HHHHH--HcC
Q 046257 253 AGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTG--LMVAY--SKC 328 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y--~~~ 328 (838)
.-+.++|++++|.....++...+ +-|...+..-+-+..+.+.++.|..+.+. .+. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHc
Confidence 34455566666666666665443 22333444444455566666666533321 111 111111 23333 366
Q ss_pred CChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCc-ccHHHHHhhCCCCChhHHHHHHHHh
Q 046257 329 GKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNG-FTYSIILTAQPAVSPFQVHAHIIKT 407 (838)
Q Consensus 329 g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~ 407 (838)
+..++|...++... ..+..+...-...+.+.|++++|+++|+.+.+.+..--. ..-..++.+-+... . ...+.
T Consensus 93 nk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~---~--~~~q~ 166 (652)
T KOG2376|consen 93 NKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ---V--QLLQS 166 (652)
T ss_pred ccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh---H--HHHHh
Confidence 77777777777544 334334444445566777888888888877665433211 11111111111100 0 01111
Q ss_pred hccCCcchh---hHHHHHHHHcCCHHHHHHHHHhc--------CCCCcc----------hHHHHHHHHHhcCCchHHHHH
Q 046257 408 NYEKSFSVG---TALLNAYVKKGILDEAAKVFELI--------DEKDIV----------AWSAMLAGYAQIGDTEGAVKI 466 (838)
Q Consensus 408 ~~~~~~~~~---~~Li~~y~~~g~~~~A~~~f~~~--------~~~~~~----------~~~~li~~~~~~g~~~~A~~l 466 (838)
.......++ -.....+...|++.+|++++... .+.|.. .---|.-.+...|+.++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 111111112 12344567889999999999876 221111 122244556678999999999
Q ss_pred HHHhhcCCCCCCHhhHHH---HHHHhcCChhhHHH------HHHHH-------HHHHHhcCCCchhHHHHHHHHHHhcCC
Q 046257 467 YRQLTSEGVKPNEFTFSS---VINACTAPSAAVEQ------GKQFH-------ACSIKAKLNNALCVSSALVTMYSKKGN 530 (838)
Q Consensus 467 ~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~li~~y~k~g~ 530 (838)
+...+... .+|...... -|.+...- ..+-. -+..+ .......-......-++++.+|. +.
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d-~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKD-QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccc-cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 99988764 444432222 22222221 11111 00000 00111111122333456666665 34
Q ss_pred HHHHHHHHHhcCC--CCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHH
Q 046257 531 IESASEVFKRQRK--RDLVSWNSMICGYAQ-HGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 531 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
.+.+++.-...+. |....=+.+..++.. ...+.+|.+++.+.-+ -.|+. +.....+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5666666666652 233222333333322 2246677777777766 34554 333344445567888888888877
Q ss_pred --------HHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCCHHHHHHHHHHHH---------
Q 046257 606 --------IMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM--------PFAASATVWRTVLAACR--------- 660 (838)
Q Consensus 606 --------~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m--------~~~~~~~~w~~ll~~c~--------- 660 (838)
... +.+ -.+.+...++.++.+.+.-+-|-.++.+. +.++...+-...+.+..
T Consensus 401 ~~~~~~~ss~~-~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSIL-EAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhh-hhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 443 222 23455667778888877765555555443 22221111111111111
Q ss_pred ------HhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 661 ------LISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 661 ------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
+++.+|+|....+.+.-.|+.. +.+.|..+
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 6788999999999999888874 34444443
No 73
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=8e-05 Score=83.53 Aligned_cols=411 Identities=14% Similarity=0.183 Sum_probs=217.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 046257 189 LADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 189 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~ 268 (838)
+-+.+++..-...++..+..| ..|..++|+|...|...+.-.+ +.+.+ |..--+..+.-||...++.-|.-.|
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaY 920 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAY 920 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEee
Confidence 334455555566667777777 5678888888888876654322 11111 1111112223333333222221111
Q ss_pred HHhhhC----CCCCChhhHHHHHHHHhccCcHH-----------HHHHHHHHHHHhCCC--CChhHHHHHHHHHHcCCCh
Q 046257 269 NNMGLA----GAELTRSTFVSVIKLCATTKELR-----------LARQLHSQVLKNGID--FDHNIRTGLMVAYSKCGKM 331 (838)
Q Consensus 269 ~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~-----------~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~ 331 (838)
++-.-. ++--....|-...+......|.+ --+++.++++..+++ .|+.-.+.-+.++...+-.
T Consensus 921 erGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 921 ERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred cccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCc
Confidence 110000 00001111222222222222221 224555666665543 2444555566667777777
Q ss_pred HHHHHHHHhcccCCCeee-----hHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHH--
Q 046257 332 EDASKIFSMMREMKDVVS-----WTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHI-- 404 (838)
Q Consensus 332 ~~A~~~f~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~-- 404 (838)
.+-.++++++.-.+++.+ -|.+|-.-.+ .+....+++.+++-.-. .|+..... + .. ++....
T Consensus 1001 ~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~ia--i-----~~--~LyEEAF~ 1069 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEIA--I-----EN--QLYEEAFA 1069 (1666)
T ss_pred HHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHHH--h-----hh--hHHHHHHH
Confidence 777777777653333333 2222222222 22333444444432210 01110000 0 00 111111
Q ss_pred HHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHH
Q 046257 405 IKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSS 484 (838)
Q Consensus 405 ~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 484 (838)
+-..+..+....+.|++ .-+.+|.|.+.-+...+| ..|+.+..+-.+.|...+|++-|-+. -|+..|.-
T Consensus 1070 ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~e 1138 (1666)
T KOG0985|consen 1070 IFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLE 1138 (1666)
T ss_pred HHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHH
Confidence 11112223333333333 346677777777766554 46899999999999999999887443 35677889
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------------------
Q 046257 485 VINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--------------------- 543 (838)
Q Consensus 485 ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------------------- 543 (838)
+++++++. +.++.-..+..++.+..-+|. +-+.||-+|+|.+++.+-++.+..-..
T Consensus 1139 Vi~~a~~~-~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl 1215 (1666)
T KOG0985|consen 1139 VIDVASRT-GKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKL 1215 (1666)
T ss_pred HHHHHHhc-CcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHH
Confidence 99999998 999998888888888766654 446788899999998887765432110
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH
Q 046257 544 --RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS 621 (838)
Q Consensus 544 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 621 (838)
.++.-|.-|...+...|+++.|...-++. .+..||--+-.||...+.+.-| +|- -..+.-..+-..
T Consensus 1216 ~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLe 1283 (1666)
T KOG0985|consen 1216 LYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELE 1283 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHH
Confidence 12334555555566666666655544332 2345777777777765544333 222 112233444567
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-++..|...|.++|-..+++..
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhh
Confidence 7888899999999988888865
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=3.3e-07 Score=99.68 Aligned_cols=243 Identities=13% Similarity=0.171 Sum_probs=169.2
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCC----------Ccc-hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEK----------DIV-AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTF 482 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 482 (838)
.+..-|..+|...|+++.|..+|....+. .+. .-+.+...|...+++.+|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 34456889999999999999999865432 111 2334566777888899998888887541
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----------CCCHH-HHHH
Q 046257 483 SSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----------KRDLV-SWNS 551 (838)
Q Consensus 483 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----------~~~~~-~~~~ 551 (838)
....+... .+.-..+++.|...|.+.|++++|...+++.. .+.+. -++.
T Consensus 271 --~e~~~G~~------------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 271 --REEVFGED------------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred --HHHhcCCC------------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 11111111 01112344456667999999999888776543 22333 3666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcC---Cc--cCC-Cc
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEH---HI--YPT-ME 618 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~--~p~-~~ 618 (838)
++..|...+++++|..+++...+. -+.+++ -++..+...+.+.|+++||.++|++++... +- .+. -.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 777889999999999999876542 133444 478899999999999999999999887542 11 122 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+++.|...|.+.++..+|.++|.+.. .|. -.| -.-.|+-..+|-.|+-+|.+.|++++|.++-....
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~------~i~---~~~--g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAK------DIM---KLC--GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHH------HHH---HHh--CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 57788899999999999999998752 222 111 11245566788999999999999999999887764
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=98.84 E-value=2.4e-07 Score=105.78 Aligned_cols=179 Identities=14% Similarity=0.040 Sum_probs=130.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
+..+.+...+..+++.. +.+...+..+..++...|++++|...|++.. +.+...|..+...|...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44666777777666654 3356667777788889999999999998865 3356778888999999999999999999
Q ss_pred HHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 046257 571 EMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS 648 (838)
Q Consensus 571 ~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~ 648 (838)
+..+ +.|+.. .+..++.++...|++++|...++...+.. .|+ +..+..+..+|...|++++|.+.++++
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~----- 467 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEI----- 467 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh-----
Confidence 9998 667643 33344445666889999999998876332 343 445677788889999999999999876
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 649 ATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 649 ~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
....|.+......|+..|...| ++|...++.+.+
T Consensus 468 -------------~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 468 -------------STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred -------------hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3345555556666666777766 467666666543
No 76
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=9.1e-05 Score=81.39 Aligned_cols=421 Identities=12% Similarity=0.100 Sum_probs=216.2
Q ss_pred cCCCCCcccHHHHH--HHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh-------
Q 046257 37 RSPQRNFVEYNRLL--FEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS------- 107 (838)
Q Consensus 37 ~~~~~~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------- 107 (838)
.....|..+-.+++ +-|.--|+.+.|.+..+-+. +...|..+.+.|.+.++++-|+-.+..|...
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence 33334444555555 24556677777766655543 3345777777777666666665555444221
Q ss_pred --CCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 046257 108 --GFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTV 185 (838)
Q Consensus 108 --g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 185 (838)
.-.++ ..-....-.-...|.+++|..++.+-.+ |..|=+.|-..|.|++|+++-+.-.+-.++ .||-.-
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~y 864 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNY 864 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHH
Confidence 01111 1111222223455777777777765433 444555566677777777766543222222 334344
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHH
Q 046257 186 LGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAF 265 (838)
Q Consensus 186 l~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~ 265 (838)
..-+...++.+.|.+.|+..-. +-..+.. ++. .++...+...+.+.++....| -..-+-..|..+.|+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~r-mL~-----e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFR-MLK-----EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAAL 932 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHH-HHH-----hChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHH
Confidence 4444445566666666553211 1111111 111 123333444455554433333 223334567778888
Q ss_pred HHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCC
Q 046257 266 ETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMK 345 (838)
Q Consensus 266 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 345 (838)
.+|...+. |-++++..|-.|+.++|-++-++ .-|....-.|.++|-..|++.+|..+|.+..
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--- 994 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ--- 994 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---
Confidence 77776653 45566666777888887777654 2355666677788888888888888887765
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChh-HHHHHHHHhhccCCcchhhHHHHHHH
Q 046257 346 DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPF-QVHAHIIKTNYEKSFSVGTALLNAYV 424 (838)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~Li~~y~ 424 (838)
++...|..|-.++.-++-.. +.-|.. ..++ ....+....|..- .--+-.|-
T Consensus 995 ---afsnAIRlcKEnd~~d~L~n-lal~s~-------------------~~d~v~aArYyEe~g~~~-----~~AVmLYH 1046 (1416)
T KOG3617|consen 995 ---AFSNAIRLCKENDMKDRLAN-LALMSG-------------------GSDLVSAARYYEELGGYA-----HKAVMLYH 1046 (1416)
T ss_pred ---HHHHHHHHHHhcCHHHHHHH-HHhhcC-------------------chhHHHHHHHHHHcchhh-----hHHHHHHH
Confidence 33344444333332222111 111100 0000 1111111111100 12344577
Q ss_pred HcCCHHHHHHHHHhcCC--------------CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 425 KKGILDEAAKVFELIDE--------------KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
|.|.+.+|+++--+-.+ .|....+.-..-|+.+.++++|..++...++ |...+.-|.
T Consensus 1047 kAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1047 KAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCK 1117 (1416)
T ss_pred hhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHh
Confidence 88888777765322221 2444555556667778888888888766543 445555555
Q ss_pred CChhhHHHHHHHHHHHHH--hcCCC---chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 046257 491 APSAAVEQGKQFHACSIK--AKLNN---ALCVSSALVTMYSKKGNIESASEVFKRQ 541 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~ 541 (838)
.. .+.-..++.+.|.- .+..+ -..+...+.+.+.++|.+..|-+-|-+.
T Consensus 1118 ~~--nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1118 NR--NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cC--CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 43 22333333333332 12111 2345556777788888888887777543
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.83 E-value=2.8e-07 Score=86.51 Aligned_cols=161 Identities=14% Similarity=0.136 Sum_probs=138.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccC
Q 046257 520 ALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAG 595 (838)
Q Consensus 520 ~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g 595 (838)
.|.-.|...|+...|.+-+++.. +.+..+|..+...|-+.|+.+.|.+-|++.+. +.|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 35557999999999999999887 33567899999999999999999999999999 67864 56777777788899
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL 675 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l 675 (838)
.+++|.+.|+.....-...--..+|..++-.-.++|+++.|.+.+++. ++++|+.+.+.-.+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra------------------L~~dp~~~~~~l~~ 179 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA------------------LELDPQFPPALLEL 179 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH------------------HHhCcCCChHHHHH
Confidence 999999999999854222223467888888889999999999999987 89999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 676 SNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 676 ~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
++.....|++-+|...++....++.
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhccc
Confidence 9999999999999999998887664
No 78
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=0.0001 Score=80.92 Aligned_cols=370 Identities=13% Similarity=0.091 Sum_probs=218.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHc--------CCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCCh
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRL--------GLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDV 113 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 113 (838)
+-..|..|.+.|.+..+.+-|.-.+-.|... ..+-+..+-.-+.......|.+++|+.++++..+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 3457999999999988888777666665432 11222233333333446789999999999887654
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHH----------HHCCC-------
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNESN-VVSWTSLLSGYARNKMNDRVLELFHRM----------QVEGI------- 175 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m----------~~~g~------- 175 (838)
..|-..|...|.+++|.++-+.-.+-. ..||..-..-+-..++.+.|++.|+.- ....+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 345577889999999999887644311 124555555556667788888777652 22111
Q ss_pred --CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHH
Q 046257 176 --KPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVA 253 (838)
Q Consensus 176 --~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~ 253 (838)
.-|..-|.--..-+-..|+.+.|..+|..+.. |-+++...+-.|+.++|.++-++-. |....-.+..
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR 975 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG--DKAACYHLAR 975 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc--cHHHHHHHHH
Confidence 11233333333344466777777777765532 4567777777888998888876543 5556666788
Q ss_pred HHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccC---------------cHHHHHHHHHHHHHhCCCCChhHH
Q 046257 254 GYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTK---------------ELRLARQLHSQVLKNGIDFDHNIR 318 (838)
Q Consensus 254 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~g~~~~~~~~ 318 (838)
.|-..|++.+|+.+|.+.+ +|...|+.|-..+ +.-.|-..|++. |. -.
T Consensus 976 ~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~ 1038 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YA 1038 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hh
Confidence 8999999999999998765 4555555554332 222233333321 21 11
Q ss_pred HHHHHHHHcCCChHHHHHHHHhcc---------c----CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccH
Q 046257 319 TGLMVAYSKCGKMEDASKIFSMMR---------E----MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTY 385 (838)
Q Consensus 319 ~~Li~~y~~~g~~~~A~~~f~~~~---------~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 385 (838)
..-+..|.|.|.+.+|.++--.-. + ..|+...+--...|+.+.++++|..++-..++ |
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~ 1109 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------F 1109 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------H
Confidence 233556888888888876532211 1 23444455556677788888988888766554 3
Q ss_pred HHHHhhCCCCChh--HHHHHHHHhhc--cC----CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 046257 386 SIILTAQPAVSPF--QVHAHIIKTNY--EK----SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQI 457 (838)
Q Consensus 386 ~~ll~a~~~~~~~--~~~~~~~~~~~--~~----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 457 (838)
...+..|...+-. +-...+....- .+ ...+...+.+.+.+.|.+..|-+-|-+.-.+ -.-+.++.+.
T Consensus 1110 ~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKS 1184 (1416)
T KOG3617|consen 1110 SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKS 1184 (1416)
T ss_pred HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhc
Confidence 3344444333322 11111111000 11 1223445677777888888887777655432 1224455555
Q ss_pred CCchH
Q 046257 458 GDTEG 462 (838)
Q Consensus 458 g~~~~ 462 (838)
|+.++
T Consensus 1185 Gdt~K 1189 (1416)
T KOG3617|consen 1185 GDTQK 1189 (1416)
T ss_pred CCcce
Confidence 55443
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=4.4e-05 Score=77.65 Aligned_cols=280 Identities=13% Similarity=0.069 Sum_probs=184.4
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAM---LAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
++....++.+.|...|+.++|...|++...-|+.+...| .-.+.+.|+.++...+...+....-.--...|.+. ..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~-~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA-QL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh-hh
Confidence 344446788888889999999999988766555443332 23345678888777777766542100011111111 11
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
.-.. .+.+.+..+-+..++.... ++..+-.-...+...|+.++|.-.|.... +-+..+|..|+..|...|.+.+|
T Consensus 310 l~~~-K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDE-KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhh-hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 1111 4555555555555543321 22222222345567899999998887655 45889999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHH-HHHhc-cCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 566 LEVFKEMRRQDLEFDGITFIGVI-TACTH-AGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.-+-++.... +..+..+...+. ..|.- ...-++|.+++++-. .+.|+- .....+..++.+.|+.+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 9888876662 233444544442 33332 334578888888655 456653 3456677899999999999999997
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCC
Q 046257 643 MPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGD 722 (838)
Q Consensus 643 m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~ 722 (838)
. +...| |...++.|++++.....+.+|...|.....
T Consensus 464 ~------------------L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr------------------------- 499 (564)
T KOG1174|consen 464 H------------------LIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR------------------------- 499 (564)
T ss_pred H------------------Hhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------------------------
Confidence 6 44455 677889999999999999999999988764
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 046257 723 ISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 723 ~~~~~~~~i~~~l~~l~~~~~ 743 (838)
..|+.+.-.+-|+.|.++|+
T Consensus 500 -~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 -QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -cCccchHHHHHHHHHHhccC
Confidence 35677777777777777766
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=98.76 E-value=2.1e-06 Score=98.06 Aligned_cols=226 Identities=12% Similarity=0.020 Sum_probs=132.0
Q ss_pred CcchHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHHh---------cCCChHHHHHHHHHHHH
Q 046257 143 NVVSWTSLLSGYAR-----NKMNDRVLELFHRMQVEGIKPNS-FTFSTVLGVLA---------DEGIVATAVQVHTMVIK 207 (838)
Q Consensus 143 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~---------~~g~~~~a~~l~~~~~~ 207 (838)
+...|...+++-.. .+..++|+.+|++..+. .|+. ..|..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44456666665322 12356778888877664 3433 33433333222 22346777777777777
Q ss_pred hCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh-hH
Q 046257 208 NGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--R-DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS-TF 283 (838)
Q Consensus 208 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 283 (838)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 65 44566677777777777777777777776543 2 3445666777777777777777777777654 33321 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc-CC-CeeehHHHHHHHHHcC
Q 046257 284 VSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE-MK-DVVSWTAMISGHLQNG 361 (838)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~~~~~~~li~~~~~~g 361 (838)
..++..+...|++++|...+..+++...+.+...+..+...|...|+.++|...+.++.. .+ +...++.+...|.+.|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 223334445667777777777766554333444556666667777777777777766542 11 2223444445555555
Q ss_pred ChHHHHHHHHHhhh
Q 046257 362 AIDLAVNFFCQMTR 375 (838)
Q Consensus 362 ~~~~A~~l~~~m~~ 375 (838)
++|...++++.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 355555555544
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=0.00021 Score=77.24 Aligned_cols=446 Identities=14% Similarity=0.135 Sum_probs=249.8
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHH
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~ 268 (838)
.+++..+.++.+.+++. ++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 35555666666666552 222222222222223345777777776654433 46678998888888888899999999
Q ss_pred HHhhhCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc----
Q 046257 269 NNMGLAGAELTR-STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE---- 343 (838)
Q Consensus 269 ~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---- 343 (838)
+..... .||. ..+.-+--.=++.++++.......+..+.. +.....|..++.++.-.|+...|..+.+....
T Consensus 99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 99 RNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 887654 4443 333333333345566666555555554432 33455666777777777777777777666543
Q ss_pred CCCeeehHHHH------HHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhh
Q 046257 344 MKDVVSWTAMI------SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGT 417 (838)
Q Consensus 344 ~~~~~~~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (838)
.++...+.... .-..++|..++|++-+..-... ..|...+ .-
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~------------------------------~e 223 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAF------------------------------EE 223 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHH------------------------------hh
Confidence 13333332222 2334556666666665544321 1111111 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCC--CcchHHHH-HHHHHhcCCchHHH-HHHHHhhcC---CCCCCHhhHHHHHHHhc
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDEK--DIVAWSAM-LAGYAQIGDTEGAV-KIYRQLTSE---GVKPNEFTFSSVINACT 490 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~-~l~~~m~~~---g~~p~~~t~~~ll~a~~ 490 (838)
.-.+.+.+.+++++|..++..+..+ |-+-|... ..++.+-.+.-+++ .+|....+. ...|-....+.+ .
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~--- 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N--- 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---
Confidence 4456688899999999999988764 44444443 34443444444555 566655442 122222222211 1
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH---H-HHHHHHhcC--------------CCCHHHHHH-
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE---S-ASEVFKRQR--------------KRDLVSWNS- 551 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~---~-A~~~f~~~~--------------~~~~~~~~~- 551 (838)
.. .-.+....+....++.|+++ ++..+...|-.-...+ + +..+...+. .|....|+.
T Consensus 300 ~e-el~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 300 GE-ELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred cc-hhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 11 33333444455555666544 3444444443322111 1 222222221 344455655
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh
Q 046257 552 -MICGYAQHGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629 (838)
Q Consensus 552 -li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 629 (838)
++..|-..|+++.|....+...+ -.|+.+ -|..=...+.|+|++++|..+++...+. -.||...-+--+.-..|
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHH
Confidence 67788899999999999999988 577753 4656668899999999999999988632 13555544455677889
Q ss_pred cCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 630 AGMLEKAMDIINRMPFAA-SATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~-~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+.+.++|.++.....-+. +++..-+.+. |..+.++ + +..|.+.|+|.+|.+=+..+
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mq-cmWf~~E--~-------g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQ-CMWFQLE--D-------GEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhh-hHHHhHh--h-------hHHHHHHHHHHHHHHHHhhH
Confidence 999999999987664222 2221111111 2222222 1 34566667776666544443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=0.00015 Score=77.44 Aligned_cols=209 Identities=11% Similarity=0.109 Sum_probs=109.5
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHhH--cCC
Q 046257 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNA--LISMYL--KSK 228 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~--li~~y~--~~g 228 (838)
-+..+|++++|......+...+ +-|...+..=+-++.+.+.+++|..+.+. .+. ..+++. +=.+|+ +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcc
Confidence 3445556666666666665543 23344455555555566666666533221 110 011111 233343 567
Q ss_pred ChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh-hHHHHHHHHhccCcHHHHHHHHHHHH
Q 046257 229 MVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS-TFVSVIKLCATTKELRLARQLHSQVL 307 (838)
Q Consensus 229 ~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (838)
..++|...++.....+..+-..-...+.+.|++++|+++|+.+.+.+..--.. --..++.+-. ..-.+..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQLL 164 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHHHH
Confidence 88888888875555555455555667778888888888888887654322111 1111221111 1111111
Q ss_pred HhCCCCChhHHHH---HHHHHHcCCChHHHHHHHHhccc-------CCCee-----e-----hHHHHHHHHHcCChHHHH
Q 046257 308 KNGIDFDHNIRTG---LMVAYSKCGKMEDASKIFSMMRE-------MKDVV-----S-----WTAMISGHLQNGAIDLAV 367 (838)
Q Consensus 308 ~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~~~~-------~~~~~-----~-----~~~li~~~~~~g~~~~A~ 367 (838)
+.-......+|.. ....+...|++.+|+++++.... ..|.. . ---|.-.+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111111223332 34456677888888888877611 11111 1 112333456789999999
Q ss_pred HHHHHhhhcC
Q 046257 368 NFFCQMTREG 377 (838)
Q Consensus 368 ~l~~~m~~~g 377 (838)
.+|...+...
T Consensus 245 ~iy~~~i~~~ 254 (652)
T KOG2376|consen 245 SIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHhc
Confidence 9999888763
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=5.5e-07 Score=88.23 Aligned_cols=225 Identities=12% Similarity=0.117 Sum_probs=176.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDE--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSA 494 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 494 (838)
+-+...|.+.|.+.+|.+.|+.-.+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+ ..|-.+||..-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g--------- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLG--------- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhh---------
Confidence 5677788888888888888876543 4566777788888888888888888877665 36666666432
Q ss_pred hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 495 AVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
....+...++.++|.++++... .-|+.+...+..+|.-.++++-|+..|++
T Consensus 296 --------------------------~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 296 --------------------------QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred --------------------------hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 2233556678889999998776 33666667778889999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 572 MRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 572 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
+++.|+. +...|..+.-+|..++++|-++.-|++.... .-.|+ .++|-.+.....-.|++.-|.+-|+-.
T Consensus 350 iLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla------ 421 (478)
T KOG1129|consen 350 ILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA------ 421 (478)
T ss_pred HHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHH------
Confidence 9999965 6678888999999999999999999888632 23343 345666777777788888888888754
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+.-+|++.++|+.|+-+-.+.|+.++|..+++..+..
T Consensus 422 ------------L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 422 ------------LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ------------hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6678999999999999999999999999999988764
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.61 E-value=2.1e-06 Score=88.25 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=117.6
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCH
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLV 597 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~ 597 (838)
..+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhH
Confidence 34577889999999988876 4566667788899999999999999999988 55554 34444444422 3469
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSN 677 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~ 677 (838)
.+|..+|+.+...+ .+++...+.+..+....|++++|++++++. ++.+|+++.+...++-
T Consensus 184 ~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~a------------------l~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 184 QDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEA------------------LEKDPNDPDTLANLIV 243 (290)
T ss_dssp CHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHH------------------CCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------HHhccCCHHHHHHHHH
Confidence 99999999997544 467788899999999999999999999986 6889999999999999
Q ss_pred HHHhcCCc-hHHHHHHHHHhh
Q 046257 678 MYAATGHW-QERARVRKLMND 697 (838)
Q Consensus 678 ~y~~~g~~-~~a~~~~~~m~~ 697 (838)
+....|+. +.+.+.+..++.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhCCChhHHHHHHHHHHH
Confidence 99999999 667788888875
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.61 E-value=5e-06 Score=90.62 Aligned_cols=197 Identities=18% Similarity=0.159 Sum_probs=138.5
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHhHcCCChhHHHHHHhcCCC-------C-
Q 046257 179 SFTFSTVLGVLADEGIVATAVQVHTMVIKN-----GG-EVVT-SVCNALISMYLKSKMVRDARAVFDGMED-------R- 243 (838)
Q Consensus 179 ~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 243 (838)
..|+..+...|...|+++.|..++.+.++. |. .|.+ ...+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888888889999999888888765 21 2222 2334466788888888888888876642 1
Q ss_pred ---CcchHHHHHHHHHhCCChHHHHHHHHHhhh-----CCC-CCChh-hHHHHHHHHhccCcHHHHHHHHHHHHHhC---
Q 046257 244 ---DSITWNSMVAGYVTNELHMEAFETFNNMGL-----AGA-ELTRS-TFVSVIKLCATTKELRLARQLHSQVLKNG--- 310 (838)
Q Consensus 244 ---~~~~~n~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--- 310 (838)
-..+++.|-..|.+.|++++|...+++..+ .|. .|... -++.+...|...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 134567777788999998888877766432 122 22332 35666777888899999988888765431
Q ss_pred CCCC----hhHHHHHHHHHHcCCChHHHHHHHHhccc------CC-C---eeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 311 IDFD----HNIRTGLMVAYSKCGKMEDASKIFSMMRE------MK-D---VVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 311 ~~~~----~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+.++ ..+++.|...|.+.|++++|+++|++... .. + -...|.|...|.+.++.++|.++|.+-..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 45788999999999999999999988753 11 1 23467788889999999999999887654
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=0.00036 Score=75.41 Aligned_cols=130 Identities=17% Similarity=0.189 Sum_probs=89.4
Q ss_pred CCchhHHH--HHHHHHHhcCCHHHHHHHHHhcCC--CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 046257 512 NNALCVSS--ALVTMYSKKGNIESASEVFKRQRK--RDLV-SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIG 586 (838)
Q Consensus 512 ~~~~~~~~--~li~~y~k~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 586 (838)
+|...+|+ .+..-|-++|+++.|+..++.... |..+ -|-.-...+...|+.++|...+++..+.+ .||...=.-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHH
Confidence 34444443 467788999999999999998874 3332 34445577888999999999999999864 445432223
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCc--cCCCchHHHH------HHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHI--YPTMEHYSCM------VDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~y~~l------v~~l~r~G~~~~A~~~~~~m 643 (838)
-..-..++..+++|.++.....+. |. .-+..-..|| ..+|.|.|++.+|++=|...
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 334445788999999998877633 33 1222222333 47889999999998877665
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00088 Score=68.49 Aligned_cols=286 Identities=12% Similarity=0.063 Sum_probs=159.7
Q ss_pred CCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHH
Q 046257 258 NELHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHN-IRTGLMVAYSKCGKMEDAS 335 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~ 335 (838)
.++...|..++-...... ++-|......+.+.+...|+.+++...|+...-.. |+.. ......-.+.+.|+.++..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHH
Confidence 344444444444433333 33344455566666666666666666666654332 2111 1111122334555555555
Q ss_pred HHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCc
Q 046257 336 KIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSF 413 (838)
Q Consensus 336 ~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 413 (838)
.+...+-. ......|-.-........+++.|+.+-++-++. .|+..--
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~a---------------------------- 336 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEA---------------------------- 336 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchH----------------------------
Confidence 55444431 112223433344444556666666666655442 1221111
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH-HHHh
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV-INAC 489 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~ 489 (838)
+-.-...+...|+.++|.-.|..... -+..+|.-|+..|...|++.||.-+-+..... +..+..+.+.+ -..|
T Consensus 337 --lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 337 --LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred --HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 00112345567888998888876543 37789999999999999999988776664432 23344444444 1344
Q ss_pred cCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 490 TAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
..-...-+.++.+++..++.... -....+.+.+.+..-|..+++.+++++-. .+|...-+.|...+...+.+++|++
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 44335566777776665554321 13344556666777777777777776654 5677777777777777777777777
Q ss_pred HHHHHHHcCCCCCh
Q 046257 568 VFKEMRRQDLEFDG 581 (838)
Q Consensus 568 l~~~m~~~g~~pd~ 581 (838)
.|...+. +.|+.
T Consensus 493 ~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 493 YYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHh--cCccc
Confidence 7777766 55543
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.50 E-value=8.6e-05 Score=82.15 Aligned_cols=289 Identities=13% Similarity=0.114 Sum_probs=181.8
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHH
Q 046257 356 GHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKV 435 (838)
Q Consensus 356 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 435 (838)
.+...|++++|++.+.+-.. ..+|..++. ......|.+.|+.++|..+
T Consensus 13 il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~------------------------------E~rA~ll~kLg~~~eA~~~ 60 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEK--QILDKLAVL------------------------------EKRAELLLKLGRKEEAEKI 60 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhh--hCCCHHHHH------------------------------HHHHHHHHHcCCHHHHHHH
Confidence 45677888888888866433 344444442 4567778889999999999
Q ss_pred HHhcCCCCc--ch-HHHHHHHHHhc-----CCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHH
Q 046257 436 FELIDEKDI--VA-WSAMLAGYAQI-----GDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSI 507 (838)
Q Consensus 436 f~~~~~~~~--~~-~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 507 (838)
+..+..+|+ .. |..+..+..-. ...+...++|+++... -|.......+.=.+.....-...+..+....+
T Consensus 61 y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 61 YRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 988876433 33 34444444222 2456677888887664 24443333322122221122233445555556
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC------------------CCCHHHH--HHHHHHHHHcCChHHHHH
Q 046257 508 KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR------------------KRDLVSW--NSMICGYAQHGHTKKALE 567 (838)
Q Consensus 508 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~------------------~~~~~~~--~~li~~~~~~g~~~~A~~ 567 (838)
+.|++ .+++.|-..|......+-..+++.... .|....| .-+...|-..|++++|++
T Consensus 139 ~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 139 RKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred hcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 66654 466667777776655555555554421 2333345 445667889999999999
Q ss_pred HHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 568 VFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 568 l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
..++.++ ..|+. ..|..-...+-|.|++++|.+.++..+. +.+ |...-+-.+..+.|+|++++|++.+....
T Consensus 216 ~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft- 289 (517)
T PF12569_consen 216 YIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYLLRAGRIEEAEKTASLFT- 289 (517)
T ss_pred HHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-
Confidence 9999999 67874 5677888899999999999999998873 233 44444556788899999999999988664
Q ss_pred CCCHHHHHHHHH-HHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 646 AASATVWRTVLA-ACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 646 ~~~~~~w~~ll~-~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.....-|.. -| .-...--++.|.+.|++..|.+-+..+.
T Consensus 290 r~~~~~~~~L~~mQc---------~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 290 REDVDPLSNLNDMQC---------MWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCCCCcccCHHHHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 332110000100 01 1122345778888999888887776654
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=2.7e-06 Score=83.53 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=156.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC
Q 046257 148 TSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKS 227 (838)
Q Consensus 148 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 227 (838)
+.|.+.|.+.|.+.+|.+.|+.-.+. .|-..||..|-++|.+..+...|..++.+-++. ++.|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766554 455667777777777777777777777766654 244555555566666667
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHH
Q 046257 228 KMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHS 304 (838)
Q Consensus 228 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 304 (838)
++.++|.+++....+ -|+.+...+..+|.-.++++-|+..|+++.+.|+. +...|..+--+|.-.++++.+..-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777778777776554 24555555667777788888888888888888754 44556666666777788888887777
Q ss_pred HHHHhCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 305 QVLKNGIDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 305 ~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
..+..--.|+ ..+|-.|-......|++..|.+.|+-... ..+..++|.|.-.-.+.|+.++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7766543332 34666676677777888888888887652 22345688887777888888888888887665
No 90
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0026 Score=67.57 Aligned_cols=181 Identities=12% Similarity=0.114 Sum_probs=136.3
Q ss_pred chHHHHHHHHhhcC-CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHH
Q 046257 460 TEGAVKIYRQLTSE-GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN-ALCVSSALVTMYSKKGNIESASEV 537 (838)
Q Consensus 460 ~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~ 537 (838)
.+...+.+++.... ...|+ .+|...++.--+. ..++.++.++..+.+.+..+ ++.+.++++..|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 44555666666553 23444 4566666666666 88999999999999988777 8999999999887 4789999999
Q ss_pred HHhcC--CCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 046257 538 FKRQR--KRDL-VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHAGLVDEGQQYFDIMVNEHH 612 (838)
Q Consensus 538 f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 612 (838)
|+.-. -+|. .--+..+.-+...|+-..|..+|++.+..++.||. ..|...|.--+.-|++....++-+++...+.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 98665 2344 44466788888889999999999999999888885 5799999999999999999999888876665
Q ss_pred --ccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 613 --IYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 613 --~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|...+-..+++.|+-.+....-..-++.+
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 5555556667788887766654444333333
No 91
>PF12854 PPR_1: PPR repeat
Probab=98.43 E-value=2.8e-07 Score=60.14 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=21.3
Q ss_pred CccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 612 HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 612 ~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666666
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=1.4e-05 Score=80.85 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=119.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----H
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR--KR-DL---VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI----T 583 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 583 (838)
....+-.+...|.+.|++++|...|+++. .| +. ..|..+...|...|++++|+..|+++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 34445556667888899999999998765 23 22 4677788889999999999999999988 455432 3
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCccCCCch-H-----------------HHHHHHHHhcCCHHHHH
Q 046257 584 FIGVITACTHA--------GLVDEGQQYFDIMVNEHHIYPTMEH-Y-----------------SCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 584 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~-y-----------------~~lv~~l~r~G~~~~A~ 637 (838)
+..+..++... |+.++|.+.|+.+.+.+ |+... + ..+.+.|.+.|++++|.
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44444455543 77888999999887543 43321 1 24567788999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISLQP---HDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l~P---~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
..+++. ++..| ..+..+..++.+|...|++++|...++.+..+
T Consensus 187 ~~~~~a------------------l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 187 NRFETV------------------VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHH------------------HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999876 44444 34578999999999999999999999988754
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.40 E-value=3.5e-05 Score=80.49 Aligned_cols=190 Identities=11% Similarity=-0.042 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhC
Q 046257 182 FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--R-DSITWNSMVAGYVTN 258 (838)
Q Consensus 182 ~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~n~li~~~~~~ 258 (838)
|..+...+...|+.++|...|..+++.. +.+...++.+...|...|++++|...|+...+ | +..+|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334444445555555555555555443 33445555555555555555555555555432 2 234455555555666
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 259 ELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
|++++|++.|++..+. .|+..........+...++.++|...+....... .++... ..+...+......+++.+.+
T Consensus 146 g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~lg~~~~~~~~~~~ 221 (296)
T PRK11189 146 GRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIVEFYLGKISEETLMERL 221 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHHHHHccCCCHHHHHHHH
Confidence 6666666666665543 2332211111122233455666666665443222 222211 22333222222222222222
Q ss_pred Hhccc------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc
Q 046257 339 SMMRE------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE 376 (838)
Q Consensus 339 ~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 376 (838)
..-.+ .+....|..+...+.+.|+.++|+..|++..+.
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21110 122346777788888888888888888887764
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.0011 Score=70.27 Aligned_cols=221 Identities=16% Similarity=0.155 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
.+.++..+..+++.|.+-++...+ .++.-++....+|...|...+....-....+.|-. ...-|+.+-.+
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~------- 300 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKA------- 300 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHH-------
Confidence 455666666777777776665543 34444666677788777777766655554433210 00001110000
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--RDLVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
...+...|.+.++++.|...|++... ++... ..+....++++...+...
T Consensus 301 ----------------------~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a 351 (539)
T KOG0548|consen 301 ----------------------LARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKA 351 (539)
T ss_pred ----------------------HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHH
Confidence 01133456666777777777766431 12111 122233445555444444
Q ss_pred HcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHH
Q 046257 574 RQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVW 652 (838)
Q Consensus 574 ~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w 652 (838)
- +.|+.. -...=.+.+.+.|++.+|...+.++++.. +-|...|+.-.-+|.+.|.+.+|.+-.+..
T Consensus 352 ~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~--------- 418 (539)
T KOG0548|consen 352 Y--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKC--------- 418 (539)
T ss_pred h--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHH---------
Confidence 4 344431 12222455666777777777777766332 223455666666677777777666655443
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 653 RTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 653 ~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+....|..-+-++....+|++|.+.+.+-.+
T Consensus 419 ---------ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 419 ---------IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred ---------HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666676666667777777777766666554
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.00077 Score=71.54 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhc
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRA 630 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~ 630 (838)
...+.+.|++..|+..|.+++.. .|+ ...|..-..++.+.|.+.+|+.-.+..++. .|+. .-|.-=..++.-.
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHH
Confidence 56778889999999999999995 465 678888888999999999999887776633 3432 2232223334444
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 046257 631 GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 631 G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
.++++|.+.+++. ++++|++...-..+.+.+...
T Consensus 440 k~ydkAleay~ea------------------le~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 440 KEYDKALEAYQEA------------------LELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHH------------------HhcCchhHHHHHHHHHHHHHh
Confidence 4666777666665 788998888888877777763
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.37 E-value=0.00053 Score=77.53 Aligned_cols=160 Identities=13% Similarity=0.187 Sum_probs=97.9
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.--|++.-|.-.|-+-. +.+..+|..+...+.++.+++.|...|...+. +.|+ .+.|......-...|+.-+..
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 33455555555554332 44667777777777777777777777777766 5665 345655555555566666666
Q ss_pred HHHHH---HHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 602 QYFDI---MVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 602 ~~~~~---m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
.+|.. .....|-.|+..-+-|....-...|+.++-..-.+++ |.+=+..-+.++-.|++..+|...+..
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki--------~sAs~al~~yf~~~p~~~fAy~~~gst 976 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI--------SSASLALSYYFLGHPQLCFAYAANGST 976 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh--------hhhHHHHHHHHhcCcchhHHHHHHHhH
Confidence 66643 1111233345555555555555667655544444333 444444445677788888888888888
Q ss_pred HHhcCCchHHHHHHHHH
Q 046257 679 YAATGHWQERARVRKLM 695 (838)
Q Consensus 679 y~~~g~~~~a~~~~~~m 695 (838)
.-+.+.+++|.++....
T Consensus 977 lEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 977 LEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887766554
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.36 E-value=9.2e-06 Score=74.51 Aligned_cols=123 Identities=11% Similarity=-0.036 Sum_probs=99.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc
Q 046257 536 EVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY 614 (838)
Q Consensus 536 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 614 (838)
.+|++...-++..+..+...+.+.|++++|+..|++... +.|+ ...+..+..+|...|++++|...|+.... +.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~ 88 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LD 88 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cC
Confidence 445555444555567778888999999999999999998 6665 56788888899999999999999999883 34
Q ss_pred C-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 615 P-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 615 p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
| +...+..+...+.+.|++++|.+.+++. +++.|+++..+...+++...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A------------------l~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTA------------------IKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHH
Confidence 5 5677888999999999999999999987 78888888888877766543
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=0.014 Score=71.88 Aligned_cols=407 Identities=11% Similarity=0.061 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHCCCC--C-C----hhhHHHHHHHHhcC----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCC
Q 046257 161 DRVLELFHRMQVEGIK--P-N----SFTFSTVLGVLADE----GIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKM 229 (838)
Q Consensus 161 ~~A~~l~~~m~~~g~~--p-~----~~t~~~ll~~~~~~----g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~ 229 (838)
+.+.++++++...|+- | + .+.|..+++-+... .+.++...+|.. ....|...|+
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~r---------------aa~~~~~~g~ 356 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHRA---------------AAEAWLAQGF 356 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHHH---------------HHHHHHHCCC
Confidence 3456667777666641 1 1 24566666655421 122233333332 2334555666
Q ss_pred hhHHHHHHhcCCCCCcch--HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHH
Q 046257 230 VRDARAVFDGMEDRDSIT--WNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVL 307 (838)
Q Consensus 230 ~~~A~~~f~~m~~~~~~~--~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (838)
+.+|..........+... ...........|+++.+.+++..+.......+..........+...++++++..++....
T Consensus 357 ~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 357 PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666555554332111 111123345567777777777665322111222222333444556788888888887765
Q ss_pred HhCCC------CC--hhHHHHHHHHHHcCCChHHHHHHHHhccc---CCCe----eehHHHHHHHHHcCChHHHHHHHHH
Q 046257 308 KNGID------FD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE---MKDV----VSWTAMISGHLQNGAIDLAVNFFCQ 372 (838)
Q Consensus 308 ~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~----~~~~~li~~~~~~g~~~~A~~l~~~ 372 (838)
+.--. +. ......+...+...|++++|...+++... ..+. ..++.+...+...|++++|...+++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43111 11 11222334556678999999988887542 1121 2345555667789999999999988
Q ss_pred hhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-------CC--
Q 046257 373 MTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-------KD-- 443 (838)
Q Consensus 373 m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-------~~-- 443 (838)
.....-....... ...+...+...+...|++++|...+++..+ ++
T Consensus 517 al~~~~~~g~~~~--------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 517 TEQMARQHDVYHY--------------------------ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHhhhcchHH--------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 8753111110000 001123456677888999999888765432 11
Q ss_pred --cchHHHHHHHHHhcCCchHHHHHHHHhhcC--CCCCCH--hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc-hh
Q 046257 444 --IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE--GVKPNE--FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA-LC 516 (838)
Q Consensus 444 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 516 (838)
...+..+...+...|++++|...+.+.... ...+.. ..+..+-...... ++.+.+...+.......-... ..
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~-G~~~~A~~~l~~a~~~~~~~~~~~ 649 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR-GDLDNARRYLNRLENLLGNGRYHS 649 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccH
Confidence 122344555666779999999888876542 111221 1121122222333 666666666555543211100 00
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC
Q 046257 517 -----VSSALVTMYSKKGNIESASEVFKRQRKRDL-------VSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD 580 (838)
Q Consensus 517 -----~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd 580 (838)
.....+..+...|+.+.|...+.....+.. ..+..+..++...|++++|..++++.... |..++
T Consensus 650 ~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~ 729 (903)
T PRK04841 650 DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSD 729 (903)
T ss_pred hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHH
Confidence 001122344557788888877766543211 11344556677778888888887776653 22222
Q ss_pred h-hHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 581 G-ITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 581 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
. .+...+..++...|+.++|...+.+..+
T Consensus 730 ~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 730 LNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 3455555666777888888777777663
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.35 E-value=1e-05 Score=83.17 Aligned_cols=151 Identities=15% Similarity=0.173 Sum_probs=102.2
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHH
Q 046257 421 NAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGK 500 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 500 (838)
.+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~------------- 171 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAE------------- 171 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHH-------------
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHH-------------
Confidence 3456678888887777654 44555566778888888888888888888763 3333 3332322
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 046257 501 QFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL 577 (838)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 577 (838)
+.+..+.-...+.+|..+|+++. .+++.+.|.+..++...|++++|.+++++..+ .
T Consensus 172 -------------------awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~ 230 (290)
T PF04733_consen 172 -------------------AWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--K 230 (290)
T ss_dssp -------------------HHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C
T ss_pred -------------------HHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 23333433346888888888876 34677788888888899999999999888776 3
Q ss_pred CCC-hhHHHHHHHHHhccCCH-HHHHHHHHHHHhc
Q 046257 578 EFD-GITFIGVITACTHAGLV-DEGQQYFDIMVNE 610 (838)
Q Consensus 578 ~pd-~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~ 610 (838)
.|+ ..|+..++.+..+.|+. +.+.+++.++...
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 454 46777788777888877 6677888887643
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.34 E-value=6e-07 Score=58.62 Aligned_cols=32 Identities=38% Similarity=0.458 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 576 DLEFDGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 576 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
|+.||.+||+.||.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777776666
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.00033 Score=68.32 Aligned_cols=309 Identities=12% Similarity=0.060 Sum_probs=169.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH-HHHHHhc
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMNES---NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST-VLGVLAD 191 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~ 191 (838)
+++.+..+.+..++++|++++..-.++ +....+.|..+|-...++..|-..|+++-.. .|...-|.. -.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 445555566777788888877765553 4455667777777777888888888877654 343333321 1233344
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHH----HhHcCCChhHHHHHHhcCCC-CCcchHHHHHHHHHhCCChHHHHH
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALIS----MYLKSKMVRDARAVFDGMED-RDSITWNSMVAGYVTNELHMEAFE 266 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~----~y~~~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~~g~~~~A~~ 266 (838)
.+.+..|..+...|... ....+..+. ..-..+++..++.++++.+. .+..+-+...-...+.|++++|++
T Consensus 91 A~i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred hcccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 55666666666655432 111111111 12246888999999999884 555555555556678999999999
Q ss_pred HHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHcCCChHHHHHHHHhcc
Q 046257 267 TFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRT----GLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 267 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
-|+...+-+---....|+..+.. .+.++.+.|.....+++++|+...+...- -.++.-+-.+-..-+.
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~------- 237 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ------- 237 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH-------
Confidence 99988765433334567766644 45688999999999999988654332211 0011000000000000
Q ss_pred cCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc-CCCCCcccHHHHH--hhCCCCChh-HHHHHHHHhhccCCcchhhH
Q 046257 343 EMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE-GVRPNGFTYSIIL--TAQPAVSPF-QVHAHIIKTNYEKSFSVGTA 418 (838)
Q Consensus 343 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll--~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 418 (838)
..-+..+|.-...+.+.|+++.|.+.+.+|.-. .-..|++|...+- ++-++.++- .-...++.... -...++..
T Consensus 238 -Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 -SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred -HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 000111233333445667777777777777532 2344555553321 111111111 22222222211 22234455
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE 441 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~ 441 (838)
++-.|||..-++-|-.++.+-..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcc
Confidence 66667777777777777665443
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.31 E-value=0.00022 Score=78.95 Aligned_cols=290 Identities=11% Similarity=0.091 Sum_probs=154.1
Q ss_pred HHHhCCChHHHHHHHccCCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHh----c--C
Q 046257 122 LYMRTNNVEDGRRVFDDMNE--SNVVS-WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLA----D--E 192 (838)
Q Consensus 122 ~y~~~g~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~--~ 192 (838)
.+...|++++|.+.++.-.. .|..+ .......+.+.|+.++|..+|..+.+.+ |+...|-..+..+. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34455666666666654332 23332 3334455556666666666666665543 44444444333333 1 1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChh-HHHHHHhcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHH
Q 046257 193 GIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVR-DARAVFDGMEDRDS-ITWNSMVAGYVTNELHMEAFETFNN 270 (838)
Q Consensus 193 g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~-~A~~~f~~m~~~~~-~~~n~li~~~~~~g~~~~A~~l~~~ 270 (838)
.+.+...++++.+.+.- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+..-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13444455555443332 11111111111111101111 11222222223333 2334444444433333333344443
Q ss_pred hhhC----C----------CCCChh--hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHH
Q 046257 271 MGLA----G----------AELTRS--TFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDA 334 (838)
Q Consensus 271 m~~~----g----------~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 334 (838)
.... + -.|+.. ++..+...+...|+++.|.+..+..+++. +..+..|..-.+.|-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3221 1 123332 44555667778899999999999888875 33467788888899999999999
Q ss_pred HHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCC
Q 046257 335 SKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKS 412 (838)
Q Consensus 335 ~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~ 412 (838)
.+.++.... ..|...=+..+..+.++|+.++|.+++....+.+..|-...+ +.|.....
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~-----------~mQc~Wf~-------- 308 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN-----------DMQCMWFE-------- 308 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH-----------HHHHHHHH--------
Confidence 998888763 345555666778888999999999999888776653322111 11111111
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhc
Q 046257 413 FSVGTALLNAYVKKGILDEAAKVFELI 439 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~~~f~~~ 439 (838)
.....+|.+.|++..|.+.|..+
T Consensus 309 ----~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 309 ----TECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHH
Confidence 23456677888888887776554
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.29 E-value=2.3e-05 Score=76.07 Aligned_cols=146 Identities=11% Similarity=0.157 Sum_probs=115.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
+-+|.+.|+++....-.+.+..+. ..|...++.++++..+++.++ ..|+ ...|..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 446889999888755544332221 022236677889999999888 4565 56788888999999999999
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHH-HhcCC--HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLY-SRAGM--LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~G~--~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++. ++++|+++.++..|+
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a------------------l~~dP~~~~al~~LA 151 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKA------------------LALDANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH------------------HHhCCCChhHHHHHH
Confidence 999998873 445 566788888864 77787 59999999987 899999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHhhC
Q 046257 677 NMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 677 ~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
..+...|++++|...++++.+.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999764
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=0.013 Score=66.79 Aligned_cols=521 Identities=11% Similarity=0.035 Sum_probs=278.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCChhhHHHHHHHH
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEG-IKPNSFTFSTVLGVL 189 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~ 189 (838)
..|..|-..|....+...|.+.|+..-+ -|..+|......|++..++++|..+.-.--+.. ...-...|..+--.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 5677888888888888888888887654 456688889999999999999988833322211 001112233333334
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHH---HHHHHHhCCChHHHHH
Q 046257 190 ADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNS---MVAGYVTNELHMEAFE 266 (838)
Q Consensus 190 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~---li~~~~~~g~~~~A~~ 266 (838)
-..++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-. ....-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 56677888888888877765 6678889999999999999999999998877644444332 1223455678888887
Q ss_pred HHHHhhhC------CCCCChhhHHHHHHHHhccCc-------HHHHHHHHHHHHHhCC--------------------CC
Q 046257 267 TFNNMGLA------GAELTRSTFVSVIKLCATTKE-------LRLARQLHSQVLKNGI--------------------DF 313 (838)
Q Consensus 267 l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~--------------------~~ 313 (838)
.+...... +..--..++..+...+...|- ++.+.+.+.-.+.... .|
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence 77665432 111111223222222222222 2222222222222211 12
Q ss_pred ChhHHHHHHHHHHc----CCCh---H---HHHHHHHhccc-CCCeeehHHHHHHHHH----cC----ChHHHHHHHHHhh
Q 046257 314 DHNIRTGLMVAYSK----CGKM---E---DASKIFSMMRE-MKDVVSWTAMISGHLQ----NG----AIDLAVNFFCQMT 374 (838)
Q Consensus 314 ~~~~~~~Li~~y~~----~g~~---~---~A~~~f~~~~~-~~~~~~~~~li~~~~~----~g----~~~~A~~l~~~m~ 374 (838)
+ .+...++..+.+ .+.. + -+.+.+-.-.. ..+..+|-.++..|.+ .| +...|+.-+.+-.
T Consensus 732 ~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 732 S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 2 111111222211 1111 1 01111111000 1245667777666554 12 2235566665554
Q ss_pred hcCCCCC-cccHHHHHhhCCCCChh--HHHHHHHHhhcc-CCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchH
Q 046257 375 REGVRPN-GFTYSIILTAQPAVSPF--QVHAHIIKTNYE-KSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAW 447 (838)
Q Consensus 375 ~~g~~pd-~~t~~~ll~a~~~~~~~--~~~~~~~~~~~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~ 447 (838)
+. ..| ..+++ .|...+..+++ .-|+.+...-.+ ....+|..+.-.+.+..+++.|...|..... .|.+.|
T Consensus 811 ~L--~ann~~~Wn-aLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 811 SL--CANNEGLWN-ALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HH--hhccHHHHH-HHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 42 223 33443 33334555555 555655544433 4566777787788889999999999987764 366778
Q ss_pred HHHHHHHHhcCCchHHHHHHHHh--hc--CCCCCCHhhHHHHHHHhcCC---hhhHHHHHHHHHH--HHH---hcCCCch
Q 046257 448 SAMLAGYAQIGDTEGAVKIYRQL--TS--EGVKPNEFTFSSVINACTAP---SAAVEQGKQFHAC--SIK---AKLNNAL 515 (838)
Q Consensus 448 ~~li~~~~~~g~~~~A~~l~~~m--~~--~g~~p~~~t~~~ll~a~~~~---~~~~~~~~~~~~~--~~~---~~~~~~~ 515 (838)
--+...-...|+.-+++.+|..- .. .|--|+..-+.....--... ...+..+..+... +++ .+.+.+.
T Consensus 888 lG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~ 967 (1238)
T KOG1127|consen 888 LGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLC 967 (1238)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchh
Confidence 77666667788888888888762 11 23333332222221111111 0122222222221 111 2445556
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHH----HHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMIC----GYAQHGHTKKALEVFKEMRRQDLEFDGITFIG 586 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 586 (838)
..|.+.....-..+..++|.+...+.. +-|...||.... -+...|.++.|..-+.....+ .|...-..
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e---vdEdi~gt 1044 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME---VDEDIRGT 1044 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh---HHHHHhhh
Confidence 666666666666667777766665533 345666665332 334455555544433211110 01111111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchH-HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHY-SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-+ +..-.++++++.+.|++...-..-..+..+. ..+....+.+|.-+.|...+-+.
T Consensus 1045 ~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1045 DL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred hH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 11 1134678899999998876433333343333 33445567788888888765543
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.28 E-value=0.0014 Score=65.36 Aligned_cols=302 Identities=13% Similarity=0.150 Sum_probs=179.6
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCeeehHHHH---HHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCCh
Q 046257 321 LMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMI---SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSP 397 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 397 (838)
|-..+...|++.+|..-|.... ..|+..|.++. ..|...|+...|+.=|.+..+ .+||...-..
T Consensus 44 lGk~lla~~Q~sDALt~yHaAv-e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi---------- 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAV-EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI---------- 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH----------
Confidence 4445556677778887777777 66666666554 456777777777777777665 3555432210
Q ss_pred hHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC
Q 046257 398 FQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP 477 (838)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 477 (838)
--...+.|.|.++.|..-|+.+.+.+..- +....++.+.-..++-..+..+
T Consensus 111 --------------------QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~q-------- 161 (504)
T KOG0624|consen 111 --------------------QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQ-------- 161 (504)
T ss_pred --------------------HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHH--------
Confidence 11234568899999999998876543310 1111111111111111111111
Q ss_pred CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh---cCCCCHHHHHHHHH
Q 046257 478 NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKR---QRKRDLVSWNSMIC 554 (838)
Q Consensus 478 ~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~---~~~~~~~~~~~li~ 554 (838)
+++++ .. |+...+......++... +.|...+..-.++|...|++..|+.=+.. +...+....--+-.
T Consensus 162 -------l~s~~-~~-GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 162 -------LKSAS-GS-GDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred -------HHHHh-cC-CchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 11111 11 44444554444444432 44666666667778888888888755543 33556666666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChhH-HH---H-------HHH--HHhccCCHHHHHHHHHHHHhcCCccCC--Cc-
Q 046257 555 GYAQHGHTKKALEVFKEMRRQDLEFDGIT-FI---G-------VIT--ACTHAGLVDEGQQYFDIMVNEHHIYPT--ME- 618 (838)
Q Consensus 555 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~---~-------ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~- 618 (838)
.+-..|+.+.++...++.++ +.||+.. |. . |-+ .....+.+.++.+-.+...+ ..|. ..
T Consensus 232 L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir 306 (504)
T KOG0624|consen 232 LLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIR 306 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCccccee
Confidence 77888888888888888888 7888632 21 1 111 12334555555555554442 1333 11
Q ss_pred --hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 619 --HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 619 --~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+..+-..+...|++.||++.-.+. ++++|+|..++.--+.+|.....+++|..-+++..
T Consensus 307 ~~~~r~~c~C~~~d~~~~eAiqqC~ev------------------L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 307 YNGFRVLCTCYREDEQFGEAIQQCKEV------------------LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred eeeeheeeecccccCCHHHHHHHHHHH------------------HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1222334455667777777766655 78888889999989999999999999988888876
Q ss_pred h
Q 046257 697 D 697 (838)
Q Consensus 697 ~ 697 (838)
+
T Consensus 369 e 369 (504)
T KOG0624|consen 369 E 369 (504)
T ss_pred h
Confidence 5
No 106
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.25 E-value=0.00014 Score=68.76 Aligned_cols=180 Identities=19% Similarity=0.178 Sum_probs=114.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 419 LLNAYVKKGILDEAAKVFELIDEKD---IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
|.-.|...|+...|.+-+++..+.| ..+|..+...|.+.|..+.|.+-|++... +.|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~----------------- 101 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPN----------------- 101 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCC-----------------
Confidence 4445555566666655555554332 23455555555555555555555555543 2222
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRD----LVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
+..+.|-....+|..|++++|...|++.. .|+ ..+|..+.-+..+.|+.+.|.+.|+
T Consensus 102 ------------------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 102 ------------------NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ------------------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 23344445555777788888888887665 342 3567777777777888888888888
Q ss_pred HHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHH
Q 046257 571 EMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 571 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
+.++ ..|+ ..++..+.......|++-+|..+++...... .++.+....-|.+--+.|+-+.|.+.
T Consensus 164 raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 164 RALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 8877 5565 4567777777777888888888887765332 26666666666777777777666554
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.24 E-value=0.00081 Score=72.78 Aligned_cols=193 Identities=12% Similarity=-0.032 Sum_probs=97.3
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCccc---HHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHH---H
Q 046257 45 EYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGST---LSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVST---S 118 (838)
Q Consensus 45 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~ 118 (838)
.|..+...+...|+...+...+.+..+.. +.+... ...-...+...|+++.+...++.+++.. +.+...++ .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 34445555666677777766666655432 122111 1111223355677888887777777654 23333333 1
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 046257 119 LVDLYMRTNNVEDGRRVFDDMNESNV---VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV 195 (838)
Q Consensus 119 li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 195 (838)
+.......+..+.+.+.++.....+. ..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence 22222224555555555554222111 222334445666777777777777766543 12334455555566666666
Q ss_pred HHHHHHHHHHHHhCC-CCch--hHHHHHHHHhHcCCChhHHHHHHhcC
Q 046257 196 ATAVQVHTMVIKNGG-EVVT--SVCNALISMYLKSKMVRDARAVFDGM 240 (838)
Q Consensus 196 ~~a~~l~~~~~~~g~-~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m 240 (838)
++|...+...++... .++. ..+..+...+...|+.++|..+|++.
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666555421 1111 12334455555555555555555554
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.19 E-value=3.4e-05 Score=70.71 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 566 LEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
..+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A- 84 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA- 84 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH-
Confidence 456777777 66775 44567788899999999999999873 345 5667888999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 645 FAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++.++..++.+|...|+.++|...++...+.
T Consensus 85 -----------------l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 85 -----------------LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -----------------HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999988653
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.17 E-value=0.0027 Score=68.73 Aligned_cols=291 Identities=7% Similarity=-0.004 Sum_probs=159.2
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHhCC-CCChh-HHHHHHHHHHhCCChHHHHHHHccCCC--C-CcchHHHHHHHHHh
Q 046257 82 SSVLKTCGCLFDHVFGRQVHCECVKSGF-ARDVN-VSTSLVDLYMRTNNVEDGRRVFDDMNE--S-NVVSWTSLLSGYAR 156 (838)
Q Consensus 82 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~-~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~ 156 (838)
..+...+...++.+.+...+....+... ..+.. ........+...|++++|.+.++...+ | |...++. ...+..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHH
Confidence 3333334444555555444444443322 12221 111223345667888888888877543 3 3334442 222222
Q ss_pred ----CCCchHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChh
Q 046257 157 ----NKMNDRVLELFHRMQVEGIKPNS-FTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVR 231 (838)
Q Consensus 157 ----~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 231 (838)
.+....+.+.+.. .....|+. .....+...+...|++++|...++..++.. +.+...+..+...|...|+++
T Consensus 89 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 89 LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 3444444444443 11122332 233344556678888888988888888876 555677788888888888999
Q ss_pred HHHHHHhcCCCC-----Cc--chHHHHHHHHHhCCChHHHHHHHHHhhhCCC-CCChhhH-H--HHHHHHhccCcHHHHH
Q 046257 232 DARAVFDGMEDR-----DS--ITWNSMVAGYVTNELHMEAFETFNNMGLAGA-ELTRSTF-V--SVIKLCATTKELRLAR 300 (838)
Q Consensus 232 ~A~~~f~~m~~~-----~~--~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~~~~~~~~~~~a~ 300 (838)
+|...+++.... +. ..|..+...+...|++++|++.|++...... .+..... + .++.-....|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 988888875541 11 1344677778888999999988888754322 1222111 1 2233333344333333
Q ss_pred HH---HHHHHHhCC-CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CC----Ce---eehHHHH--HHHHHcCChHH
Q 046257 301 QL---HSQVLKNGI-DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MK----DV---VSWTAMI--SGHLQNGAIDL 365 (838)
Q Consensus 301 ~~---~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~----~~---~~~~~li--~~~~~~g~~~~ 365 (838)
++ ......... .............+...|+.++|.++++.+.. .. .. ..-..++ -.+...|+.++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 33 222111110 11112223456677788888888888877753 11 11 1112223 34557899999
Q ss_pred HHHHHHHhhhc
Q 046257 366 AVNFFCQMTRE 376 (838)
Q Consensus 366 A~~l~~~m~~~ 376 (838)
|.+.+.+....
T Consensus 326 A~~~L~~al~~ 336 (355)
T cd05804 326 ALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.00012 Score=84.07 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
++..+-.|.....+.|..++|+.+++...+ +.||.. .+..+...+.+.+.+++|...+++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 466666777777778888888888888887 777754 46667777788888888888877766 23454 455666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+..++.+.|+.++|.+.|++. +..+|+++.+++.++..+...|+.++|...+++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~------------------~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERL------------------SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHH------------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677778888888888888876 44567777888888888888888888877777664
No 111
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=3.4e-06 Score=56.00 Aligned_cols=35 Identities=40% Similarity=0.657 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00016 Score=79.24 Aligned_cols=216 Identities=16% Similarity=0.236 Sum_probs=171.0
Q ss_pred ccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 409 YEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
++|-..+...+...+.++|-..+|..+|+++ ..|.-.|..|...|+..+|.++..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4444455567888999999999999999986 5688899999999999999999888777 47888999888888
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
.-.. .-.+++.++..+.... .-..+.......++++++.+.|+.-. .--..+|-....+..+.++++.|
T Consensus 467 ~~d~-s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDP-SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccCh-HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 7766 6777777776654332 00011111234689999999998644 33567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 566 LEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+.|..-.. ..||+ ..|+.+-.++.+.|.-.+|...+++.. +.. ..+...|....-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999998 78986 579999999999999999999999987 444 344455666667788999999999998876
No 113
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.09 E-value=0.00036 Score=81.50 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=170.1
Q ss_pred CCCcccHHHHHHHhccCCChhhHHHHHHHHHHh-CCC---CChhHHHHHHHHHHhCCChHHHHHHHccCCC-CC-cchHH
Q 046257 75 PLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS-GFA---RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE-SN-VVSWT 148 (838)
Q Consensus 75 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~-~~~~~ 148 (838)
|-+...|..-+......++++.|+++.+++++. ++. --..+|.+++++-...|.-+...++|++..+ -| ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334456777788888889999999999888764 222 2246788888888888888999999998876 33 34688
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHcC
Q 046257 149 SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE-VVTSVCNALISMYLKS 227 (838)
Q Consensus 149 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~-~~~~~~~~li~~y~~~ 227 (838)
.|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-.. ..+....-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999764 2345677888889999999889999999998876321 1344556666777789
Q ss_pred CChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh--hHHHHHHHHhccCcHHHHH
Q 046257 228 KMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS--TFVSVIKLCATTKELRLAR 300 (838)
Q Consensus 228 g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 300 (838)
|+.+.++.+|+.... +-...|+..|..-.++|..+.+..+|++....++.|-.. .|.--|..-.+.|+-..++
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 999999999998764 246789999999999999999999999998887766442 3444444333444443333
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00078 Score=65.83 Aligned_cols=307 Identities=13% Similarity=0.104 Sum_probs=173.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCC-ChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHH-HHHHH
Q 046257 248 WNSMVAGYVTNELHMEAFETFNNMGLAGAEL-TRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTG-LMVAY 325 (838)
Q Consensus 248 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-Li~~y 325 (838)
+++.+..+.+..++.+|++++..-.+. .| +...++.+-.+|....++..|-..++++-.. .|...-|.. -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455666666777777777777665544 34 4455556666666777777777777766543 233332321 12344
Q ss_pred HcCCChHHHHHHHHhcccCCCeeehHHHHHH--HHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHH
Q 046257 326 SKCGKMEDASKIFSMMREMKDVVSWTAMISG--HLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAH 403 (838)
Q Consensus 326 ~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~ 403 (838)
-+.+.+.+|.++...|.+.++...-..-+.+ .-+.+++..+..+.++...+|
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-------------------------- 142 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-------------------------- 142 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--------------------------
Confidence 4556666777776666622222111111111 122444445555544443221
Q ss_pred HHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH
Q 046257 404 IIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE----KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE 479 (838)
Q Consensus 404 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 479 (838)
+..+.+...-...+.|+.+.|.+-|+...+ .....||.-+..| +.|+.+.|++...++.+.|++-.+
T Consensus 143 --------~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 143 --------EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred --------ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 111222233345688999999999988765 3456777665544 567888999999999988876333
Q ss_pred hh-HHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CHHHHHHHH
Q 046257 480 FT-FSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR-----DLVSWNSMI 553 (838)
Q Consensus 480 ~t-~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li 553 (838)
.. ......+- .. ..+.....+|...+ +..+|.-.-.+.+.|+.+.|.+.+-.|+++ |++|...|.
T Consensus 214 ElgIGm~tegi-Dv-rsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 214 ELGIGMTTEGI-DV-RSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred ccCccceeccC-ch-hcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 21 00000000 00 00111111111111 111222233467889999999999999844 777776654
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
-. -..|++.+..+-++-+++. .|= ..||..++-.|++...++-|..++.
T Consensus 285 l~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 285 LM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred Hh-cccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 32 2345566666666666663 443 4799999999999988888888764
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.08 E-value=0.012 Score=72.53 Aligned_cols=366 Identities=8% Similarity=-0.007 Sum_probs=212.8
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCcch--HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChH
Q 046257 119 LVDLYMRTNNVEDGRRVFDDMNESNVVS--WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVA 196 (838)
Q Consensus 119 li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 196 (838)
....|...|++.+|..........+... ...........|++..+..++..+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3445666777777777666655432211 11122234456777777777666532211122222233344455678899
Q ss_pred HHHHHHHHHHHhCCC------Cc--hhHHHHHHHHhHcCCChhHHHHHHhcCCC----CCc----chHHHHHHHHHhCCC
Q 046257 197 TAVQVHTMVIKNGGE------VV--TSVCNALISMYLKSKMVRDARAVFDGMED----RDS----ITWNSMVAGYVTNEL 260 (838)
Q Consensus 197 ~a~~l~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~n~li~~~~~~g~ 260 (838)
++..++..+.+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 998888877553111 11 11222333455678999999988876432 221 234556667788999
Q ss_pred hHHHHHHHHHhhhCCC---CC--ChhhHHHHHHHHhccCcHHHHHHHHHHHHHh----CCCC---ChhHHHHHHHHHHcC
Q 046257 261 HMEAFETFNNMGLAGA---EL--TRSTFVSVIKLCATTKELRLARQLHSQVLKN----GIDF---DHNIRTGLMVAYSKC 328 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~---~~~~~~~Li~~y~~~ 328 (838)
+++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +... ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999988764311 11 1224455566777889999999988877653 2211 223345566677788
Q ss_pred CChHHHHHHHHhccc-----CC--CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCC-cccHHHHHhhCCCCChhHH
Q 046257 329 GKMEDASKIFSMMRE-----MK--DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPN-GFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 329 g~~~~A~~~f~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~ 400 (838)
|++++|...+++... .+ ....+..+...+...|+.++|.+.+.+......... ...+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~------------ 654 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN------------ 654 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH------------
Confidence 999999988887642 11 122234455677789999999999988755211110 0000000
Q ss_pred HHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 401 HAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIV-------AWSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
.....+..+...|+.+.|...+.....+... .+..+..++...|++++|...+.+....
T Consensus 655 --------------~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 655 --------------ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0011224455688999999988776543211 1345666778888999998888776542
Q ss_pred CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046257 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN-ALCVSSALVTMYSKKGNIESASEVFKRQR 542 (838)
Q Consensus 474 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 542 (838)
.-. .+... ...+...+...|.+.|+.++|...+.+..
T Consensus 721 ~~~--------------------------------~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 721 ARS--------------------------------LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHH--------------------------------hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 100 00000 11222334556788899999888887664
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.00016 Score=79.12 Aligned_cols=237 Identities=15% Similarity=0.143 Sum_probs=163.6
Q ss_pred CCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHh
Q 046257 311 IDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILT 390 (838)
Q Consensus 311 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 390 (838)
++|-...-..+...+.++|-...|..+|+++. .|...|.+|...|+..+|..+..+-.+ -.||..-|.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc---- 461 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC---- 461 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH----
Confidence 45555666778889999999999999999876 688889999999999999888888776 356666663
Q ss_pred hCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046257 391 AQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQL 470 (838)
Q Consensus 391 a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 470 (838)
.|.+......-+++|.++++....+--.+|+.. ...+++++++.+.|+.-
T Consensus 462 ---------------------------~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~s 511 (777)
T KOG1128|consen 462 ---------------------------LLGDVLHDPSLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERS 511 (777)
T ss_pred ---------------------------HhhhhccChHHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHH
Confidence 344444444556778888776654422222221 12357777777777664
Q ss_pred hcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CHH
Q 046257 471 TSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR-DLV 547 (838)
Q Consensus 471 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~~~ 547 (838)
.+. .|- -..+|-.+.-++.++++++.|.+.|..-. +| +..
T Consensus 512 l~~--npl-----------------------------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 512 LEI--NPL-----------------------------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred hhc--Ccc-----------------------------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 432 111 11222233334668899999999998765 44 567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLY 627 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 627 (838)
+||.+-.+|.+.|+-.+|...+++..+.+..| -..|..........|.+++|.+.+.++........+.++..-++...
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 89999999999999999999999999976333 23344555556788999999999998875544444666665555433
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.00021 Score=74.97 Aligned_cols=136 Identities=12% Similarity=0.075 Sum_probs=110.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
+...|++++|++.++.+. +.|+..|......+...|+..+|.+.++++.. ..|+ ......+..++.+.|+.++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 446688889998888775 44677777788889999999999999999998 6788 45566778889999999999
Q ss_pred HHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA 680 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~ 680 (838)
..+++.... ..+-++..|..|..+|...|+..+|..-.-++ |+
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-----------------------------------~~ 436 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAEG-----------------------------------YA 436 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------------------------HH
Confidence 999988763 34457788999999999999988887776655 88
Q ss_pred hcCCchHHHHHHHHHhhCC
Q 046257 681 ATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 681 ~~g~~~~a~~~~~~m~~~g 699 (838)
-.|+|++|.......+++.
T Consensus 437 ~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 437 LAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hCCCHHHHHHHHHHHHHhc
Confidence 9999999999998887754
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00035 Score=74.70 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=88.1
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 503 HACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
.......+...|+.+...|.-.|--.|++++|.+.|+... +.|...||-|...++...+.++|++.|++.++ ++|
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP 495 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQP 495 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCC
Confidence 3444455656788888888888999999999999999876 44789999999999999999999999999999 899
Q ss_pred Chh-HHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 580 DGI-TFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 580 d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+-+ ..-.|.-+|...|.++||.++|-..+
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 953 45567778999999999999987655
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.00 E-value=0.001 Score=77.94 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=143.0
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhc-CCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTRE-GVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK 425 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~ 425 (838)
...|-..|....+.++.++|.+++++.... +++-...-. .+|.+++++-..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKL----------------------------NiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKL----------------------------NIWIAYLNLENA 1509 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHH----------------------------HHHHHHHhHHHh
Confidence 345666677777777777777777666542 111111111 234455555555
Q ss_pred cCCHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 426 KGILDEAAKVFELIDEK--DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
-|.-+...++|++..+- ....|..|...|.+.+.+++|-++|+.|.+. ..-....|...+...-.. ..-+.++.+.
T Consensus 1510 yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~-ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1510 YGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ-NEAEAARELL 1587 (1710)
T ss_pred hCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc-cHHHHHHHHH
Confidence 56666666677666553 2345666777777777777777777777664 333445565555555555 5556666666
Q ss_pred HHHHHhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 504 ACSIKAKLN-NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 504 ~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
..+++.-.. ..+.+..-.+.+-.|+|+.+.++.+|+... ++-...|+..|..-.++|+.+.+..+|++....++.|
T Consensus 1588 ~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1588 KRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 665554322 245555666777889999999999999876 4567889999999999999999999999999998887
Q ss_pred Ch--hHHHHHHHHHhccCC
Q 046257 580 DG--ITFIGVITACTHAGL 596 (838)
Q Consensus 580 d~--~t~~~ll~a~~~~g~ 596 (838)
-. ..|.-.|..-...|+
T Consensus 1668 kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCc
Confidence 64 334444443333343
No 120
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=9.2e-06 Score=53.83 Aligned_cols=35 Identities=31% Similarity=0.642 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNS 179 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 179 (838)
++||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.98 E-value=0.001 Score=70.03 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH-HHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV-ITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
....+-...-.+...|+.++|+..++++.. -.||...|..+ ...+...+++++|.+.++.+.. ..|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHH
Confidence 344455555566778999999999999988 57887766655 4578899999999999999984 4576 455667
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.++|.+.|+..+|...++.. +.-+|+|+..|..|+..|...|+..++..-+.++-.
T Consensus 380 ~a~all~~g~~~eai~~L~~~------------------~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRY------------------LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHH------------------hhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 789999999999999999976 566899999999999999999999999998888754
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.98 E-value=0.06 Score=61.12 Aligned_cols=227 Identities=8% Similarity=0.018 Sum_probs=117.6
Q ss_pred cCCChhhHHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHH
Q 046257 90 CLFDHVFGRQVHCECVKSGFA-RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLE 165 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 165 (838)
..+++..|.+-...+.+..+. +-..++.+|+ ..|.|+.++|..+++.... .|..|...+-..|.+.++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 445667777776666655321 1122222222 3567788888877776543 356677777777778888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCc
Q 046257 166 LFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDS 245 (838)
Q Consensus 166 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~ 245 (838)
+|++..+. -|+..-...++.++.+.+++.+-.++--++.+ .++.+.+.+-++++.+... ...++.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs------------~~~~~~ 163 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQS------------IFSENE 163 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHh------------ccCCcc
Confidence 88777653 46666667777777777666554444333333 2345555555555555432 111111
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCChhhHHHHHHHHhccCcHHHHHHHHH-HHHHhCCCCChhHHHHHHH
Q 046257 246 ITWNSMVAGYVTNELHMEAFETFNNMGLAG-AELTRSTFVSVIKLCATTKELRLARQLHS-QVLKNGIDFDHNIRTGLMV 323 (838)
Q Consensus 246 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~Li~ 323 (838)
... .+.- .-|.+.++.+.+.+ -.-+..-...-+......+..++|..++. ...+.-..-+...-+--++
T Consensus 164 ~~~-~i~l--------~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 164 LLD-PILL--------ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred ccc-chhH--------HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 111 1111 11233334443332 11111111111223334556666666662 2333323334445555666
Q ss_pred HHHcCCChHHHHHHHHhcc
Q 046257 324 AYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 324 ~y~~~g~~~~A~~~f~~~~ 342 (838)
.+.+++++.+..++-.++.
T Consensus 235 llk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHhcChHHHHHHHHHHH
Confidence 7777777776666555544
No 123
>PLN02789 farnesyltranstransferase
Probab=97.94 E-value=0.0024 Score=66.69 Aligned_cols=219 Identities=12% Similarity=0.089 Sum_probs=136.0
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHH-HHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 046257 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSS-VINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGN 530 (838)
Q Consensus 452 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~ 530 (838)
..+...++.++|+.+..++++ +.|+..|.-. --..+..++..++.+......+++...+ +..+|+-..-++.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc
Confidence 344556677777777777765 3555543211 1111222212456666666666655432 33345444334445554
Q ss_pred --HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc---CC----HH
Q 046257 531 --IESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHA---GL----VD 598 (838)
Q Consensus 531 --~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~~ 598 (838)
.+++...++++. .+|..+|+.....+...|++++|++.++++++.+.. |...|+.....+.+. |. .+
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 256677776665 568889999999999999999999999999995433 344555555444443 22 35
Q ss_pred HHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 599 EGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA----GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~----G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
+...+...++.. .| +...|+-+..+|... ++..+|.+++.+. +..+|+++.+..
T Consensus 201 ~el~y~~~aI~~---~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~------------------~~~~~~s~~al~ 259 (320)
T PLN02789 201 SELKYTIDAILA---NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV------------------LSKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHHHHh---CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh------------------hcccCCcHHHHH
Confidence 677777666633 45 445676666677663 3445677777664 456788888899
Q ss_pred HHHHHHHhcC------------------CchHHHHHHHHH
Q 046257 674 LLSNMYAATG------------------HWQERARVRKLM 695 (838)
Q Consensus 674 ~l~~~y~~~g------------------~~~~a~~~~~~m 695 (838)
.|+.+|+... ..++|.++.+.+
T Consensus 260 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 260 DLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 9999998743 235677777766
No 124
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.5e-05 Score=52.35 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0041 Score=60.32 Aligned_cols=170 Identities=12% Similarity=0.107 Sum_probs=123.6
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 502 FHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
+.+.+.......+......-...|...|++++|.+..+....-+....|.- .+.+..+.+-|.+.+++|.+ +. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~Vq--I~lk~~r~d~A~~~lk~mq~--id-ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQ--ILLKMHRFDLAEKELKKMQQ--ID-ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc--cc-hH
Confidence 444555555455534444445568999999999999988544444444433 34566778999999999988 33 45
Q ss_pred hHHHHHHHHHh----ccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 582 ITFIGVITACT----HAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 582 ~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
.|.+-|..++. ..+.+.+|.-+|+.|.+++ .|+..+.+-+..+....|+++||+.+++..
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~ea-------------- 233 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEA-------------- 233 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHH--------------
Confidence 67776766664 3457999999999998544 688888888888889999999999999987
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCCchHHH-HHHHHHh
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAATGHWQERA-RVRKLMN 696 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~-~~~~~m~ 696 (838)
+.-+|+++.+...+.-.--..|+-.++. +.....+
T Consensus 234 ----L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 234 ----LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred ----HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 6778888888888877777788876654 3344443
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00026 Score=75.28 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAG 595 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g 595 (838)
...+|+..+...++++.|..+|+++...+...+-.|+..|...++..+|++++++.++. .|+ ...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667778899999999999999766666777888898999999999999999973 554 444555556688999
Q ss_pred CHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 046257 596 LVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS 648 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~ 648 (838)
+.+.|+++.+++. ...|+ ..+|..|+..|.+.|++++|+-.++.+|+.+.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 9999999999998 34575 56899999999999999999999999996553
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.88 E-value=0.00025 Score=64.42 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 567 EVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 567 ~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
++|++... ..|+. .....+...+...|++++|.+.|+...... +.+...+..+...|.+.|++++|.+.+++.
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~-- 77 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALA-- 77 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34566666 56654 345566667778888999998888876432 225567777888888899999999988876
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 646 AASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 78 ----------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 78 ----------------AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----------------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778888899999999999999999999988877653
No 128
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=2.5e-05 Score=51.34 Aligned_cols=34 Identities=35% Similarity=0.628 Sum_probs=30.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKP 177 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 177 (838)
+.+||.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.82 E-value=0.00041 Score=67.33 Aligned_cols=111 Identities=10% Similarity=0.124 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHH-hccCC--HHHH
Q 046257 528 KGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITAC-THAGL--VDEG 600 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~-~~~g~--~~~a 600 (838)
.++.+++...++... +.|...|..+...|...|++++|+..|++..+ +.|+. ..+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566665555443 45778888888888888888888888888888 56754 4555666653 56666 4888
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++++...+. .| +...+..+...+.+.|++++|...++++
T Consensus 130 ~~~l~~al~~---dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKALAL---DANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHh---CCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888733 34 4567777888888888888888888887
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.79 E-value=0.00053 Score=69.23 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=42.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+...+.+.|++++|...++...+.+.-.| ....+..++.++.+.|++++|.+.++.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44556778889999998888876543223 2356778888888999999998888765
No 131
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.77 E-value=0.087 Score=56.44 Aligned_cols=140 Identities=13% Similarity=0.186 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 500 KQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
..++..+++.-...-..+|-.+++.--+..-++.|+.+|.+..+ .++...++++.-|+. ++.+-|..+|+-=+.
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLK 429 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHH
Confidence 34444444433333345677788888888889999999998872 278889999988875 678899999987665
Q ss_pred cCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 575 QDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 575 ~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.-+|. .--...+.-+++.++-..++.+|++.... ++.|+ .+.|..+++-=..-|++.-+.++-+++
T Consensus 430 --kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 430 --KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred --hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 24454 44456777888999999999999999865 66665 468999999999999999999988765
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0036 Score=60.84 Aligned_cols=123 Identities=14% Similarity=0.097 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA 590 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 590 (838)
..+..+++....+.|++..|...|.+.. ++|...||.+..+|.+.|+.++|..-|.+..+ +.|+ ....+.+...
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms 177 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHH
Confidence 3344444444444555555555554433 33444555555555555555555555555554 3443 2334444444
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
+.-.|+.+.|..++...... -.-+..+-..++-+.+..|++++|+++..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 44455555555555444311 11133333444444455555555555443
No 133
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3e-05 Score=49.65 Aligned_cols=31 Identities=48% Similarity=0.895 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDL 577 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 577 (838)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999988774
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.74 E-value=0.0015 Score=76.00 Aligned_cols=233 Identities=12% Similarity=0.107 Sum_probs=139.6
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDE--KD-IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
+...+..|++.|...+++++|.++.+...+ |+ ...|-.+...|.+.++.+++..+ .+.. ..+..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~--------- 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQN--------- 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccc---------
Confidence 345567899999999999999999986554 33 33444444477777777766655 3322 11111
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
........++..+... ..+...+-.|..+|.+.|+.++|..+++++. ..|+...|.+...|+.. +.++|
T Consensus 97 -----~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 97 -----LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred -----cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 1112222222222221 2223355567778888888888888888776 44677788888888887 88888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHH---H-H-hccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 566 LEVFKEMRRQDLEFDGITFIGVIT---A-C-THAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~t~~~ll~---a-~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
++++.+....-+ |..-|+.+.. - | ...-+++.=.++.+.+....+..--...+--+..-|-...+++++.+++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 888887766411 1111111111 1 1 1223344444444444433332223344444555666677788888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 641 NRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 641 ~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
+.. ++.+|+|..+..-++..|. +++.+
T Consensus 247 K~i------------------L~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 247 KKI------------------LEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHH------------------HhcCCcchhhHHHHHHHHH--HHccC
Confidence 876 8889998888888888877 44444
No 135
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0014 Score=63.63 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=90.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
+-..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++.... -+||..+|+.+.-+|-+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 3444556677777777776644 446566777888888899999999999998883 244567888888889999999
Q ss_pred HHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 598 DEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
++|..-|.+..+- .| ++..++.|.-.|.-.|+++.|+.++.+..
T Consensus 151 ~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 151 DEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999888887743 34 34567788888888899999999888763
No 136
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.67 E-value=0.061 Score=54.13 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=135.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHH---HHHhcCCChHHHHHHHHHHHHhCCCCchhHH-HH
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVL---GVLADEGIVATAVQVHTMVIKNGGEVVTSVC-NA 219 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~-~~ 219 (838)
+.-.--+-..+...|++.+|+.-|....+. |+..|-++. ..|...|....|..=+..+++. .||.... --
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 334445667777788888888888877653 444444444 3456677777777777777765 4654321 11
Q ss_pred HHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHH
Q 046257 220 LISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLA 299 (838)
Q Consensus 220 li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 299 (838)
-...+.+.|.++.|..-|+.+.+.++. -+....++.+.-..++-. .....+..+...|+...+
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNA 174 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhH
Confidence 234566788888888888776543221 111111111111111111 133345556667888888
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcC
Q 046257 300 RQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG 377 (838)
Q Consensus 300 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 377 (838)
.....++++.. +.|...+..-..+|...|++..|+.=++.... ..++...-.+-..+.+-|+.+.++...++-.+
T Consensus 175 i~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-- 251 (504)
T KOG0624|consen 175 IEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK-- 251 (504)
T ss_pred HHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--
Confidence 88888888765 57888888888999999999888765555432 45566666677778888998888888887765
Q ss_pred CCCCcc
Q 046257 378 VRPNGF 383 (838)
Q Consensus 378 ~~pd~~ 383 (838)
+.||.-
T Consensus 252 ldpdHK 257 (504)
T KOG0624|consen 252 LDPDHK 257 (504)
T ss_pred cCcchh
Confidence 456654
No 137
>PLN02789 farnesyltranstransferase
Probab=97.59 E-value=0.01 Score=62.14 Aligned_cols=193 Identities=12% Similarity=0.032 Sum_probs=120.5
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 046257 45 EYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF-DHVFGRQVHCECVKSGFARDVNVSTSLVDLY 123 (838)
Q Consensus 45 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 123 (838)
+++.+-..+...+..++|+.++.++.+.. +-+..+|+.--..+...+ +++++...+..+++... .+..+|+..--.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHH
Confidence 34555566677888999999999988753 223334443333444455 57888888888887653 4555677655555
Q ss_pred HhCCCh--HHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC---CCh
Q 046257 124 MRTNNV--EDGRRVFDDMNE---SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADE---GIV 195 (838)
Q Consensus 124 ~~~g~~--~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~ 195 (838)
.+.|.. +++...++.+.+ .|..+|+-..-.+.+.|+++++++.++++.+.++. |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 556652 566777766554 56678888888888888899999999998887654 555666555544433 222
Q ss_pred ----HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC----CChhHHHHHHhcCC
Q 046257 196 ----ATAVQVHTMVIKNGGEVVTSVCNALISMYLKS----KMVRDARAVFDGME 241 (838)
Q Consensus 196 ----~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~ 241 (838)
+...+....+++.. +.|...|+-+...+... +...+|.+.+.+..
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 34445555555554 45666777666666652 22344555555443
No 138
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=8.8e-05 Score=47.44 Aligned_cols=31 Identities=39% Similarity=0.712 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGI 175 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 175 (838)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.54 E-value=0.28 Score=56.04 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=49.8
Q ss_pred hHHHHHHHHcCCHH---HHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 417 TALLNAYVKKGILD---EAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 417 ~~Li~~y~~~g~~~---~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
+.|++++.+.++.. +|.-+++..... |..+=-.+|..|.-.|-+..|.++|..+.-..++-|...|..+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIF 514 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHH
Confidence 67899999998865 344444444333 3334445789999999999999999999877777777665543
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0012 Score=59.64 Aligned_cols=115 Identities=8% Similarity=0.011 Sum_probs=89.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
.+..-+...|++++|.++|+... -+.|. ..-|-.|.-.+-..|++++|.+.+... +.+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A------------------~~L 98 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA------------------AQI 98 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------Hhc
Confidence 44455567888888888888776 23453 345666778888899999999999877 678
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 665 QPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 665 ~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
+|+|+.+|..++..|...|+.+.|.+-|+...... ..+|+-.+|..+.+.....+.+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999876531 1467888888888877766643
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.52 E-value=0.0024 Score=58.78 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC--chHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM--EHYSC 622 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~ 622 (838)
|..++..+ ..|+..++.+.++++... .|+. .....+...+...|++++|...|+..... ...|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44455555 377788888888888874 3433 23334556677788888888888888743 222221 12344
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKL 694 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~ 694 (838)
+..++...|++++|+..++..+. .|-.+..+.+++++|...|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-------------------~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-------------------EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-------------------cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67788888888888888876531 122455667888888889999888888765
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.48 E-value=0.019 Score=67.17 Aligned_cols=151 Identities=11% Similarity=0.076 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHh
Q 046257 178 NSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVT 257 (838)
Q Consensus 178 ~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~ 257 (838)
+...+-.+..+|.+.|+.+++.++++++++.. +.|+.+.|.+...|+.. ++++|+.++.+. +..|..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHh
Confidence 33455666666667777777777777777766 55667777777777777 777777666443 333555
Q ss_pred CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHcCCChHHHHH
Q 046257 258 NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN-GIDFDHNIRTGLMVAYSKCGKMEDASK 336 (838)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~ 336 (838)
.+++.++.+++.++... .|+.. +.-.++.+.+... |...-..++-.|-..|-+..+++++..
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred hhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 66667777777666653 22221 1111222222222 222233344445555555566666666
Q ss_pred HHHhccc--CCCeeehHHHHHHHH
Q 046257 337 IFSMMRE--MKDVVSWTAMISGHL 358 (838)
Q Consensus 337 ~f~~~~~--~~~~~~~~~li~~~~ 358 (838)
+|..+.+ +.|.....-++..|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 6665543 223333444444444
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.46 E-value=0.0018 Score=57.06 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSC 622 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 622 (838)
++...+..+...|++++|++.|+++... .|+. ..+..+..++...|++++|.++|+.+...+.-.| ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4556667777788888888888888763 3442 3455577777888888888888888774432222 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..++.+.|+.++|.+.++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 777788888888888888876
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.41 E-value=0.0027 Score=57.59 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
......+...+.+.|++++|.+.|++.... .|+ ...+..+...+...|++++|..+++...+.. +.+...+..+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la 92 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 334445556666777777777777777663 343 4455566666667777777777777665321 22345556666
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m 643 (838)
..|...|++++|.+.+++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 93 ECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 7777777777777777765
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.41 E-value=0.0037 Score=57.48 Aligned_cols=122 Identities=10% Similarity=0.082 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRK--RDL----VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVIT 589 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~ 589 (838)
|..++..+ ..++...+...++.+.. |+. ..+-.+...+...|++++|...|++.......|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 47888888888877762 222 2233355778899999999999999999663332 235556778
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+...|++++|+..++... .. ......+....++|.+.|+.++|...+++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~-~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIP-DE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhcc-Cc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8899999999999997643 21 223446677899999999999999999863
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.35 E-value=0.0033 Score=67.06 Aligned_cols=120 Identities=10% Similarity=0.084 Sum_probs=64.0
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 046257 120 VDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAV 199 (838)
Q Consensus 120 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 199 (838)
+..+...++++.|..+|+++.+.++..+..|++.+...++..+|++++.+..+.. +-|...+..-.+.|.+.++.+.|.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3334444666666666666665555555556666655566666666666555432 113333333334455555556666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC
Q 046257 200 QVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME 241 (838)
Q Consensus 200 ~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 241 (838)
.+...+++.. +.+..+|..|...|.+.|+++.|...++.++
T Consensus 255 ~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 255 EIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6655555553 3333455555555555555555555555554
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.039 Score=53.36 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=124.7
Q ss_pred CCchHHHHHHHHhhc---CC-CCCCHhhHH-HHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046257 458 GDTEGAVKIYRQLTS---EG-VKPNEFTFS-SVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE 532 (838)
Q Consensus 458 g~~~~A~~l~~~m~~---~g-~~p~~~t~~-~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 532 (838)
.++++.++++.++.. .| ..|+..+.. -+.-|.-.. +..+.|+.....+.+.- +.+..+..--.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 456777777777654 24 555554432 222222222 66777777777665543 444444333333456789999
Q ss_pred HHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 533 SASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 533 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
+|.++++.+.+ .|.+++---+......|+.-+|++-+.+..+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 99999999873 35677777777788889989999999998885 66788999999999999999999999999998
Q ss_pred cCCccCCC-chHHHHHHHHHhcC---CHHHHHHHHhhC
Q 046257 610 EHHIYPTM-EHYSCMVDLYSRAG---MLEKAMDIINRM 643 (838)
Q Consensus 610 ~~~~~p~~-~~y~~lv~~l~r~G---~~~~A~~~~~~m 643 (838)
-+.|.. -.+..+.+.+.-.| +++-|.+.+.+.
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456644 34566777765544 456677777765
No 148
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.30 E-value=0.41 Score=52.90 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=81.2
Q ss_pred CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCC----hhhHHHHHHHHhccCcHHHHHHH
Q 046257 227 SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELT----RSTFVSVIKLCATTKELRLARQL 302 (838)
Q Consensus 227 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~ 302 (838)
-|++++|++++-+|..+|.. |..+.+.|++-...++++.- |-..| ...|+.+-..++....++.|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999998887753 55666777777666665431 11111 23566666777777777777777
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHH
Q 046257 303 HSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQ 372 (838)
Q Consensus 303 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 372 (838)
+..-... ..++.+|.+...+++-+.+-..++ .|......|...+...|..++|.+.|-+
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp--e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLP--EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC--cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6543211 234566666666666666666655 3455566777778888888887776644
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.29 E-value=0.003 Score=67.67 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA 630 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~ 630 (838)
...+...|++++|+++|++.++ ..|+ ...|..+..++.+.|++++|...++.++. +.| +...|..+..+|.+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3445566777777777777776 4454 34555666666677777777777766653 234 334556666666777
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 631 GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 631 G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
|++++|+..+++. ++++|+++.....+..+
T Consensus 84 g~~~eA~~~~~~a------------------l~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 84 EEYQTAKAALEKG------------------ASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHH
Confidence 7777777777665 56667666655554433
No 150
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.026 Score=54.99 Aligned_cols=151 Identities=16% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCC
Q 046257 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALC-VSSALVTMYSKKGN 530 (838)
Q Consensus 452 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~y~k~g~ 530 (838)
..|+..|++++|++..+.. .++..-.....+++.. ...+.+++....|.+..-+.... ..++.|....-.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~-----~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKM-----HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 4456667777777666541 1121111222222221 44455555444444422111111 22334444444567
Q ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH-HHHHHH
Q 046257 531 IESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEG-QQYFDI 606 (838)
Q Consensus 531 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~~~~~ 606 (838)
+.+|.-+|+++.+ |+..+.|.+..++...|++++|..++++.+... .-|+.|...++.+--+.|.-.++ .++..+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8888888888874 566777777888888888888888888888753 33456666666666667765444 455556
Q ss_pred HHhc
Q 046257 607 MVNE 610 (838)
Q Consensus 607 m~~~ 610 (838)
.+..
T Consensus 268 Lk~~ 271 (299)
T KOG3081|consen 268 LKLS 271 (299)
T ss_pred HHhc
Confidence 5533
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.00029 Score=57.81 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHhccCCHHHHHHHHHH
Q 046257 560 GHTKKALEVFKEMRRQDLE-FDGITFIGVITACTHAGLVDEGQQYFDI 606 (838)
Q Consensus 560 g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 606 (838)
|++++|+.+|+++.+..-. |+...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555542210 1222222344444444444444444443
No 152
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0087 Score=64.38 Aligned_cols=182 Identities=12% Similarity=0.153 Sum_probs=81.5
Q ss_pred cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHH
Q 046257 191 DEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFET 267 (838)
Q Consensus 191 ~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l 267 (838)
+.|++.+|.-.|+..++.. +.+...|--|...-+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444555555555555544 33445555555555555554455544444333 2333334444445555555555555
Q ss_pred HHHhhhCCC------C--CChhhHHHHHHHHhccCcHHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 268 FNNMGLAGA------E--LTRSTFVSVIKLCATTKELRLARQLHSQV-LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 268 ~~~m~~~g~------~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
++.-..... . ++..+-.. +.......+....++|-++ ...+...|..+...|--.|--.|++++|...|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 544422110 0 00000000 1111112222222332222 22333355555555555555556666666655
Q ss_pred Hhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 339 SMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 339 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+.... +.|-..||.|...++...+.++|+..|++.++
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 55432 22444566665555555556666666655554
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.21 E-value=0.0035 Score=67.16 Aligned_cols=93 Identities=9% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
...+...|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++.++ +.|+ ...|..+..+|.+.|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCH
Confidence 455678899999999999876 44678899999999999999999999999999 6675 56788888999999999
Q ss_pred HHHHHHHHHHHhcCCccCCCch
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
++|...|+...+ +.|+...
T Consensus 87 ~eA~~~~~~al~---l~P~~~~ 105 (356)
T PLN03088 87 QTAKAALEKGAS---LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHH---hCCCCHH
Confidence 999999999873 4565443
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.39 Score=50.21 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
.+..+.-+...|+...|.++..+..-||..-|...+.+|+..|++++-.++... +-.++-|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455567789999999999999999999999999999999999877665432 22458899999999999999
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++|..+...+ .+..-+.+|.++|++.+|.+.--+.
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999998753 2366789999999999998886554
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.19 E-value=0.0074 Score=57.35 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYS 621 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 621 (838)
....+..+...|...|++++|+..|++..+.+..|+ ...+..+...+.+.|++++|..+++...+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 344566677777777888888888877776432222 245666667777778888888877777632 332 33455
Q ss_pred HHHHHHHhcCC
Q 046257 622 CMVDLYSRAGM 632 (838)
Q Consensus 622 ~lv~~l~r~G~ 632 (838)
.+..+|...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 55666666555
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0024 Score=63.26 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=66.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAG 631 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G 631 (838)
.-..+.+++++|+..|.+.++ +.|. .+-|..=..||++.|.++.|++-.+..+ .+.|. ...|..|..+|.-.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 345677888999999999888 6765 4556677788889999998888887766 34554 357888888888899
Q ss_pred CHHHHHHHHhhC
Q 046257 632 MLEKAMDIINRM 643 (838)
Q Consensus 632 ~~~~A~~~~~~m 643 (838)
++++|.+.|++.
T Consensus 164 k~~~A~~aykKa 175 (304)
T KOG0553|consen 164 KYEEAIEAYKKA 175 (304)
T ss_pred cHHHHHHHHHhh
Confidence 999999998877
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0042 Score=54.72 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=78.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
++..+...+...|++++|.+.|+.+...+.-.|. ...+..+..++.+.|++++|.+.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------ 65 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV------------------ 65 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH------------------
Confidence 4556677778899999999999999855322111 235666889999999999999999987
Q ss_pred hccCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 662 ISLQPHD---SAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 662 ~~l~P~~---~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
+...|++ +..+..++.+|...|++++|.+.++.+.+..
T Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 66 VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 4555654 5678999999999999999999999997653
No 158
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.13 E-value=0.034 Score=64.42 Aligned_cols=130 Identities=9% Similarity=-0.032 Sum_probs=64.2
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC---CcchHHHHHHH
Q 046257 178 NSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR---DSITWNSMVAG 254 (838)
Q Consensus 178 ~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~n~li~~ 254 (838)
+...+-.|..+....|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++.... +....+.+..+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 34444455555555555555555555555442 222334444455555555555555555554432 22233444455
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046257 255 YVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN 309 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (838)
+.+.|++++|.++|++....+ .-+..++...-.++-..|+.++|...|+..++.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555421 122345555555555555555555555555543
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.00082 Score=51.92 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=52.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+...+.+.|++++|++.+++. ++.+|+++.++..++.+|...|++++|..+++...+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~------------------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA------------------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH------------------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457889999999999999987 7889999999999999999999999999999988653
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.12 E-value=0.0032 Score=52.26 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 626 (838)
+|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|.++|+...... ..+...+..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHH
Confidence 355566667777777777777777766 3343 2445555556666666666666666654221 1122345555566
Q ss_pred HHhcCCHHHHHHHHhhC
Q 046257 627 YSRAGMLEKAMDIINRM 643 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m 643 (838)
+...|+.++|.+.+++.
T Consensus 78 ~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 78 YYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 66666666666665543
No 161
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.11 E-value=0.0047 Score=51.25 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
+..+...|...|++++|...|+... +.+...|..+...|...|++++|++.|++.... .|+ ..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 4556778889999999999999875 345577888999999999999999999999884 444 4577788888999
Q ss_pred cCCHHHHHHHHHHHH
Q 046257 594 AGLVDEGQQYFDIMV 608 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~ 608 (838)
.|+.++|..++....
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 999999999998876
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0052 Score=60.91 Aligned_cols=101 Identities=21% Similarity=0.305 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHH-HHHHHHhcCCHHHHHHHHhh
Q 046257 564 KALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSC-MVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-lv~~l~r~G~~~~A~~~~~~ 642 (838)
+...+-++++.+| +-..+.+++.+|...|...+ .+.|+-.+|-| -..+|.+.|.++.|.+-.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4666667777766 23457899999999999998 45776655544 58899999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 643 MPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 643 m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
. +.+||....+|..|+.+|...|++++|.+.|++..+
T Consensus 141 A------------------l~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 141 A------------------LSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE 177 (304)
T ss_pred H------------------HhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc
Confidence 7 899999999999999999999999999999887654
No 163
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.08 E-value=0.00086 Score=52.33 Aligned_cols=53 Identities=15% Similarity=0.413 Sum_probs=47.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+...|++++|.+.++++ ++.+|+++.++..|+.+|.+.|++++|..+++.+..
T Consensus 1 ll~~~~~~~A~~~~~~~------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKA------------------LQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHH------------------HHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35689999999999987 788999999999999999999999999999998765
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.03 E-value=0.009 Score=54.10 Aligned_cols=90 Identities=9% Similarity=0.041 Sum_probs=73.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL 596 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 596 (838)
+..-+...|++++|.++|+-+. .-+..-|-.|...+-..|++++|+..|..... +.|| ..++-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcCC
Confidence 3444567899999999998765 44667888999999999999999999999998 5565 5677788888899999
Q ss_pred HHHHHHHHHHHHhcCC
Q 046257 597 VDEGQQYFDIMVNEHH 612 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~ 612 (838)
.+.|++.|+..+...+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999998875443
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.93 E-value=0.00099 Score=52.18 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-CchHHHHHHHHH
Q 046257 617 MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG-HWQERARVRKLM 695 (838)
Q Consensus 617 ~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g-~~~~a~~~~~~m 695 (838)
...|..+...+.+.|++++|++.|++. ++++|+++.+|..++.+|...| ++++|.+.+++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~a------------------i~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKA------------------IELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHH------------------HHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 456778889999999999999999987 8899999999999999999999 799999998876
Q ss_pred hh
Q 046257 696 ND 697 (838)
Q Consensus 696 ~~ 697 (838)
.+
T Consensus 65 l~ 66 (69)
T PF13414_consen 65 LK 66 (69)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.89 E-value=0.02 Score=64.18 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHHHc--C---ChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhcc--------CCHHHHHHHHHHH
Q 046257 542 RKRDLVSWNSMICGYAQH--G---HTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHA--------GLVDEGQQYFDIM 607 (838)
Q Consensus 542 ~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m 607 (838)
...|...|...+.|.... + +.++|+++|++..+ ..||. ..+..+..++... +.+..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356778888888775432 2 26689999999998 68884 3444433333211 1233444444433
Q ss_pred HhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 608 VNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 608 ~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
........+...|..+.-.....|++++|...++++ ++++| +..+|+.++.+|...|+.++
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rA------------------l~L~p-s~~a~~~lG~~~~~~G~~~e 471 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKA------------------IDLEM-SWLNYVLLGKVYELKGDNRL 471 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHH------------------HHcCC-CHHHHHHHHHHHHHcCCHHH
Confidence 211112234456777766666789999999999987 78888 67889999999999999999
Q ss_pred HHHHHHHHhhC
Q 046257 688 RARVRKLMNDR 698 (838)
Q Consensus 688 a~~~~~~m~~~ 698 (838)
|...+++....
T Consensus 472 A~~~~~~A~~L 482 (517)
T PRK10153 472 AADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHhc
Confidence 99988877553
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.87 E-value=0.4 Score=49.67 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----h-hHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CccCCCc--
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-----G-ITFIGVITACTHAGLVDEGQQYFDIMVNEH-HIYPTME-- 618 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~-- 618 (838)
++..+...+.+.|++++|+++|++....-...+ . ..|...+-.+...|++..|.+.|+...... ++..+.+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 355567788888999999999998876432221 1 123344445666788999999998876321 2222221
Q ss_pred hHHHHHHHHH--hcCCHHHHHHHHhhCC
Q 046257 619 HYSCMVDLYS--RAGMLEKAMDIINRMP 644 (838)
Q Consensus 619 ~y~~lv~~l~--r~G~~~~A~~~~~~m~ 644 (838)
....|++++- ....+++|..-++++.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2344455553 2445777888888773
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.85 E-value=0.0097 Score=56.54 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
..+..+...+...|++++|..+|+...+...-.++ ...+..+..++.+.|++++|.+.+++.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------- 98 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA----------------- 98 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence 45777778888999999999999998743211111 246778889999999999999999987
Q ss_pred HhccCCCCchhHHHHHHHHHhcCC--------------chHHHHHHHHHhh
Q 046257 661 LISLQPHDSAIYVLLSNMYAATGH--------------WQERARVRKLMND 697 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~y~~~g~--------------~~~a~~~~~~m~~ 697 (838)
++..|+++..+..++.+|...|+ +++|.++++....
T Consensus 99 -l~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 99 -LELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -HHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 67789899999999999988887 4556665555543
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.83 E-value=0.083 Score=57.49 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
+..+...+..-+.+...+.-|-++|+.|-+. ..++......+++++|..+-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 3333333333344444555566666665431 23455556666777776665543
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.80 E-value=0.041 Score=52.03 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++..... .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 45677788888888999999999998887432222 246777888888899999999999887733 343 344555
Q ss_pred HHHHHH-------hcCCHHHHHHHHhhC
Q 046257 623 MVDLYS-------RAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~-------r~G~~~~A~~~~~~m 643 (838)
+...+. +.|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 888888777777654
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.79 E-value=0.0026 Score=52.10 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHhcC--CC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHH
Q 046257 528 KGNIESASEVFKRQR--KR---DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~ 601 (838)
.|+++.|..+|+++. .| +...|..+..+|.+.|++++|++++++ .+ ..|+. .....+..+|...|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 588999999999886 33 345666789999999999999999999 33 44544 33334467788999999999
Q ss_pred HHHHH
Q 046257 602 QYFDI 606 (838)
Q Consensus 602 ~~~~~ 606 (838)
++++.
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98875
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.75 E-value=0.0036 Score=48.74 Aligned_cols=48 Identities=19% Similarity=0.377 Sum_probs=30.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|++++|.++|+.+... .| +...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666777777666533 23 4455556677777777777777777776
No 173
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.16 Score=49.38 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=117.6
Q ss_pred CCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCC--C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 046257 511 LNNALCV-SSALVTMYSKKGNIESASEVFKRQRK--R---DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584 (838)
Q Consensus 511 ~~~~~~~-~~~li~~y~k~g~~~~A~~~f~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 584 (838)
..++..+ +.-+.=+...+|+.+.|...++.+.. | -+.-..+| -+-..|++++|+++|+..++.+ +.|.+++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 4455433 33344455678999999999988762 2 22222222 3456789999999999999965 3456777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
.-=+...-..|+--+|.+-+....+. +..|.+.|.-+.++|...|++++|.=-++++ +-+
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~------------------ll~ 183 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL------------------LLI 183 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH------------------HHc
Confidence 76666666677777888877777644 4568889999999999999999999989988 567
Q ss_pred CCCCchhHHHHHHHHHhcCCch---HHHHHHHHHh
Q 046257 665 QPHDSAIYVLLSNMYAATGHWQ---ERARVRKLMN 696 (838)
Q Consensus 665 ~P~~~~~y~~l~~~y~~~g~~~---~a~~~~~~m~ 696 (838)
+|-++-.+..++.++...|-.+ -|.+.+....
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8889999999999988877644 3444444443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.72 E-value=0.039 Score=61.88 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=81.4
Q ss_pred CHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcC-CCCChhHHHHHHHHHhccCCH
Q 046257 530 NIESASEVFKRQR--KRD-LVSWNSMICGYAQHG--------HTKKALEVFKEMRRQD-LEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 530 ~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~ 597 (838)
+.+.|..+|++.. +|+ ...|..+..+|.... +..++.+..++..... ...+...|..+.-.....|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 3667788887776 343 344544444333221 1234444444444421 223446677776666678999
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
++|...++++.. +.|+...|..+...+...|+.++|.+.+++. +.++|.++..
T Consensus 437 ~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A------------------~~L~P~~pt~ 489 (517)
T PRK10153 437 DEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA------------------FNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhcCCCCchH
Confidence 999999999883 4578888999999999999999999999987 6778876653
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.011 Score=60.93 Aligned_cols=253 Identities=17% Similarity=0.135 Sum_probs=151.3
Q ss_pred HHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcC--C-----CCCCH--hhHHHHHHH
Q 046257 421 NAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE--G-----VKPNE--FTFSSVINA 488 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g-----~~p~~--~t~~~ll~a 488 (838)
..+.+..++.+|+..+....+ .+..-|..-...|...|++++|+--.++-.+. | .+|+. .....++.+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 344556666666666654332 34555666677777777777776655444331 1 11111 112223333
Q ss_pred hcCChhhHHHHHHH-----HHHHHHhcC-CCchhHHHHH-HHHHHhcCCHHHHHHHHHhcCCCCHH-HHHHHHH--HHHH
Q 046257 489 CTAPSAAVEQGKQF-----HACSIKAKL-NNALCVSSAL-VTMYSKKGNIESASEVFKRQRKRDLV-SWNSMIC--GYAQ 558 (838)
Q Consensus 489 ~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~l-i~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~li~--~~~~ 558 (838)
+... .+....+.. ...+..... +|....+.-| ...+.-.|++++|.++--.+.+-|.. .+...+. ++-.
T Consensus 137 ~~~~-~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKL-KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHh-hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc
Confidence 3222 111111000 000111111 1222233222 34566678888888876665543332 2233333 4456
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHH-------------HHHHhccCCHHHHHHHHHHHHhcCCccCC-----CchH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGV-------------ITACTHAGLVDEGQQYFDIMVNEHHIYPT-----MEHY 620 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y 620 (838)
.++.++|+..|++.+. +.||+..--.. .+-..+.|.+..|.+.+...+ ++.|+ ...|
T Consensus 216 ~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY 290 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLY 290 (486)
T ss_pred ccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHH
Confidence 7889999999999988 67886432221 122357889999999998876 45554 3346
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
........|.|++++|+.--+.. ++++|.-..+|..-++.|...++|++|.+-+++.-+
T Consensus 291 ~nra~v~~rLgrl~eaisdc~~A------------------l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 291 GNRALVNIRLGRLREAISDCNEA------------------LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHhHhhhcccCCchhhhhhhhhh------------------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666777899999999888776 788888888899999999999999999999988765
No 176
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.66 E-value=1.1 Score=47.17 Aligned_cols=86 Identities=8% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHccCCC-C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 046257 134 RVFDDMNE-S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211 (838)
Q Consensus 134 ~~f~~m~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~ 211 (838)
++=+++.+ | |..+|-.||.-|..+|..++..+++++|..- ++--...|..-+++-....+++..+.+|.+.++..+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 55555554 3 5678999999999999999999999888642 2223445666666655667888888888888776543
Q ss_pred CchhHHHHHHH
Q 046257 212 VVTSVCNALIS 222 (838)
Q Consensus 212 ~~~~~~~~li~ 222 (838)
...|...+.
T Consensus 109 --ldLW~lYl~ 117 (660)
T COG5107 109 --LDLWMLYLE 117 (660)
T ss_pred --HhHHHHHHH
Confidence 445554444
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.65 E-value=0.042 Score=56.67 Aligned_cols=133 Identities=12% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhcCC-CCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEG-VKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 447 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
|-.++...-+.+..+.|..+|.+.++.+ ...+.....+.+.-+.. ++.+.|..+++..++. +..+...+...++.+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~--~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN--KDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC--S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4444444444444555555555554322 12222222222322211 3444455555555543 455666777777778
Q ss_pred HhcCCHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 046257 526 SKKGNIESASEVFKRQRK--R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 584 (838)
.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+ .-|+..++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~ 143 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSL 143 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHH
Confidence 888888888888877652 1 234788888777778888888888877777 45553333
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.64 E-value=0.22 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 046257 162 RVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHT 203 (838)
Q Consensus 162 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 203 (838)
+.+.-+++|+++|-.|+.... ...|+-.|.+.+|.++|.
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 344445667777766766433 334555666666666654
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.63 E-value=0.012 Score=55.64 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
..+..+...+...|++++|...|+.......-.+ ....|..+..+|.+.|++++|++.+++.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A----------------- 98 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA----------------- 98 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------
Confidence 4566677777788999999999999874321111 1236788899999999999999999987
Q ss_pred HhccCCCCchhHHHHHHHHH-------hcCCchHHHHHHHHH
Q 046257 661 LISLQPHDSAIYVLLSNMYA-------ATGHWQERARVRKLM 695 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~y~-------~~g~~~~a~~~~~~m 695 (838)
++++|.....+..++.+|. ..|++++|...+++.
T Consensus 99 -l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 99 -LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred -HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6778888888888888888 888888666655543
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.061 Score=52.19 Aligned_cols=164 Identities=9% Similarity=0.039 Sum_probs=117.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--CH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKR--DL--------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGV 587 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 587 (838)
+++|...|.-...+++-...|+.-..| .+ ..-+.++..+.-+|.+.-.+.++++.++..-.-+..-...|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455666665555555555555544322 22 23456777777788888899999999996545567778888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHH-----HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSC-----MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLI 662 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~-----lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~ 662 (838)
.+.-.+.|+++.|..+|+...+..+. -+-...+. +.-.|.-++++.+|...+.+. +
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i------------------~ 279 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI------------------L 279 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhheecccchHHHHHHHhhc------------------c
Confidence 88889999999999999977655433 22223333 334556677888999999888 4
Q ss_pred ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 663 SLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 663 ~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
+.||.++.+-..-+-+..-.|+..||.+..+.|+++-.
T Consensus 280 ~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 280 RMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred ccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 67788887777777777778999999999999987643
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.60 E-value=0.026 Score=47.44 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCchhHH
Q 046257 147 WTSLLSGYARNKMNDRVLELFHRMQVEGI-KPNSFTFSTVLGVLADEG--------IVATAVQVHTMVIKNGGEVVTSVC 217 (838)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~l~~~~~~~g~~~~~~~~ 217 (838)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999987653 234567788899999999999999
Q ss_pred HHHHHHhHc
Q 046257 218 NALISMYLK 226 (838)
Q Consensus 218 ~~li~~y~~ 226 (838)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887764
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.59 E-value=0.016 Score=55.06 Aligned_cols=98 Identities=15% Similarity=0.287 Sum_probs=78.8
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC-----------
Q 046257 534 ASEVFKRQ--RKRDLVSWNSMICGYAQH-----GHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAG----------- 595 (838)
Q Consensus 534 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 595 (838)
-...|+.. ..+|..+|..++..|.+. |..+=....++.|.+-|+.-|-.+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34566665 467888888888888754 677777788889999999999999999988765422
Q ss_pred -----CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCC
Q 046257 596 -----LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 596 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~ 632 (838)
+.+-|.+++++|. .+|+.||.+++..+++.+|+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 3467899999997 88999999999999999998775
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.58 E-value=0.038 Score=48.30 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=69.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC---Cc-hHHHHH
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT---ME-HYSCMV 624 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~-~y~~lv 624 (838)
.+..++-..|+.++|+.+|++..+.|+... ...+..+.+++...|++++|..+++.....+ |+ .. ....+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHH
Confidence 355678889999999999999999887765 3467788889999999999999999888654 44 22 222334
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m 643 (838)
-.+...|+.+||.+.+-..
T Consensus 83 l~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5778899999999887643
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.56 E-value=0.16 Score=51.07 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=98.5
Q ss_pred HHHhcCCHHHHHHHHHhcC--CCC-HHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhc--
Q 046257 524 MYSKKGNIESASEVFKRQR--KRD-LVS---WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTH-- 593 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~--~~~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~-- 593 (838)
.+.+.|++++|.+.|+.+. .|+ ... .-.++.+|.+.+++++|+..|++..+ ..|++ +.+.....+.++
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHhhhh
Confidence 3566799999999998886 232 222 23456778889999999999999988 56653 344444444332
Q ss_pred cC---------------C---HHHHHHHHHHHHhcCCccCCCchH------------------HHHHHHHHhcCCHHHHH
Q 046257 594 AG---------------L---VDEGQQYFDIMVNEHHIYPTMEHY------------------SCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 594 ~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~y------------------~~lv~~l~r~G~~~~A~ 637 (838)
.+ + ..+|.+.|+..++.+ |+.... -.+.+.|.+.|.+.-|.
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 11 1 346677888887665 443321 12345566777776665
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhcc---CCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISL---QPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l---~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.-++.+ ++- .|..+.+...+.+.|...|..++|..+.+...
T Consensus 196 ~r~~~v------------------~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 196 NRVEQM------------------LRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH------------------HHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 555544 222 23466778899999999999999999887664
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.56 E-value=0.021 Score=61.25 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=79.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHccCCC-CC-----cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHH
Q 046257 111 RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE-SN-----VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFST 184 (838)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 184 (838)
.+......+++......+++++..++-+... |+ ..|..++|+.|.+.|..+.++.++..=...|+-||.+||+.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444444455555555566666666655443 11 23456788888888888888888888888888888888888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcC
Q 046257 185 VLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKS 227 (838)
Q Consensus 185 ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~ 227 (838)
||+.+.+.|++..|.++...|...+...+..++.--+..+.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777655655555444444444
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.53 E-value=0.0053 Score=48.62 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
-.+|.+.+++++|.+.++.+ ++++|+++..+..++.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~------------------l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERA------------------LELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHH------------------HHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35788999999999999988 88999999999999999999999999999999987643
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.52 E-value=0.012 Score=60.76 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
+.+.|..+|+..++. +..+...+...+.-+.+.|+.+.++.+|++.+....-.. ....|...++.=.+.|+++...++
T Consensus 51 d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 51 DPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp -HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333355555544442 222233344444444444555555555554442211111 112444444444455555554444
Q ss_pred HhhC
Q 046257 640 INRM 643 (838)
Q Consensus 640 ~~~m 643 (838)
.+++
T Consensus 130 ~~R~ 133 (280)
T PF05843_consen 130 EKRA 133 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.46 E-value=0.05 Score=51.80 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=80.7
Q ss_pred CChhhHHHHHHHHh-----cCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHH
Q 046257 177 PNSFTFSTVLGVLA-----DEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSM 251 (838)
Q Consensus 177 p~~~t~~~ll~~~~-----~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~l 251 (838)
-|..+|..+++.+. +.|.++.....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 46666777776665 457888888999999999999999999999998876 3321 11111111
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc-HHHHHHHHHHHH
Q 046257 252 VAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKE-LRLARQLHSQVL 307 (838)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~ 307 (838)
--- --.+.+-|++++++|...|+-||..|+..++..+.+.+. +...+++.-.|.
T Consensus 112 F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 112 FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 000 112456789999999999999999999999999987664 333444443343
No 189
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.46 E-value=0.0019 Score=42.05 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=27.4
Q ss_pred HhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 661 LISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 661 ~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
.++++|+|+.+|..|+.+|...|++++|.
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 48999999999999999999999999986
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.44 E-value=0.062 Score=57.78 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=87.4
Q ss_pred CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHH
Q 046257 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKA--KLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRDLV 547 (838)
Q Consensus 474 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~ 547 (838)
+.+.+...+..+++.|... ..++.+..+.-..... ....-..+..++|..|.+.|..+.+..+++.=. -||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 4566777888888888777 7777777665555443 222234445688888888888888888876533 47888
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHA 594 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 594 (838)
|+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888777777777777777766654
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.44 E-value=1.6 Score=48.47 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=95.4
Q ss_pred CCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHH
Q 046257 126 TNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPN----SFTFSTVLGVLADEGIVATAVQV 201 (838)
Q Consensus 126 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~l 201 (838)
-|.+++|.+++-+|.++|.. |..+.+.|+|-...++++. .|-..| ...|..+-..++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999888753 5566677777666665542 111111 23566666666666677777776
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh
Q 046257 202 HTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRS 281 (838)
Q Consensus 202 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 281 (838)
|..--.. ...+..|.+..++++-+.+-..+++ |......|...+.+.|..++|.+.|-+--. |
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p--- 881 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P--- 881 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence 6542111 2345555555666666666666655 445566777888888888888887755321 1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHH
Q 046257 282 TFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 282 t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
-..+.+|...+++.+|.++-+.
T Consensus 882 --kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHh
Confidence 1345667777777777665543
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.43 E-value=0.041 Score=46.32 Aligned_cols=81 Identities=7% Similarity=0.110 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHhccC--------CHHHHHHHHHHHHhcCCccCCCc
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDL-EFDGITFIGVITACTHAG--------LVDEGQQYFDIMVNEHHIYPTME 618 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 618 (838)
|-...|.-+...|++.....+|+.+++.|+ -|+..+|+.++.+-.+.. .+-+.+.+++.|. ..+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHH
Confidence 334456666677999999999999999999 899999999998876543 3456778889998 568999999
Q ss_pred hHHHHHHHHHh
Q 046257 619 HYSCMVDLYSR 629 (838)
Q Consensus 619 ~y~~lv~~l~r 629 (838)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998877754
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.38 E-value=0.85 Score=47.24 Aligned_cols=43 Identities=14% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHc-CChHHHHHHHHHhhh
Q 046257 321 LMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQN-GAIDLAVNFFCQMTR 375 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~ 375 (838)
.+..|.+.|++..|-+++..+. ..|-.. |++++|++.|++..+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA------------~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA------------EIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH------------HHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777777766666554 445555 677777777766654
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.32 E-value=0.37 Score=44.47 Aligned_cols=145 Identities=13% Similarity=0.147 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 046257 531 IESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNE 610 (838)
Q Consensus 531 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 610 (838)
+.+|.+-|+.. |.+..--.|..+....|+..+|...|++...-=+.-|.....++.++....++..++...++...+.
T Consensus 76 ~Rea~~~~~~A--pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~ 153 (251)
T COG4700 76 LREATEELAIA--PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY 153 (251)
T ss_pred HHHHHHHHhhc--hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc
Confidence 34444444432 3444445677888889999999999999877444456778888999999999999999999888743
Q ss_pred CCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHH
Q 046257 611 HHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 611 ~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
..-.-++...-.+...|.-.|+.++|+.-|+.. +.--| ++..-...+.++++.|+.+++..
T Consensus 154 ~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a------------------~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 154 NPAFRSPDGHLLFARTLAAQGKYADAESAFEVA------------------ISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CCccCCCCchHHHHHHHHhcCCchhHHHHHHHH------------------HHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 322223445556778888999999999888865 22334 55566667778899998888765
Q ss_pred HHHHHh
Q 046257 691 VRKLMN 696 (838)
Q Consensus 691 ~~~~m~ 696 (838)
-+..+-
T Consensus 215 q~~~v~ 220 (251)
T COG4700 215 QYVAVV 220 (251)
T ss_pred HHHHHH
Confidence 554443
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.27 E-value=0.01 Score=45.67 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=25.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
..+.+.|++++|++.|++.++. .|+ ...+..+..++...|++++|..+|+.++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555552 343 2334444445555555555555555544
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.13 E-value=0.075 Score=53.88 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCM 623 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 623 (838)
|+.-+.-+.+.|++++|+..|+.+.+ ..|+. ..+..+..++...|++++|...|+.+.+.+.-.|. .+.+--+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33333333445677777777777776 44553 34555666677777777777777777655533222 2233344
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 046257 624 VDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m 643 (838)
...+...|+.++|.+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55666777777777777765
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=96.06 E-value=0.18 Score=46.10 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=85.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
..-+-+.|++++|..+|.-+. .+.. -+..-+..|...+-..|++++|..++.-. .-++++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~-~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A------------------~~l~~~ 103 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLC-IYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVA------------------FTLLKN 103 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-HhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHcccC
Confidence 334467899999999998876 3221 23445566778888899999999999865 456788
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHc
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDA 745 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 745 (838)
||.+++..+..|...|+.+.|...+....+ +|+-..+.++...+.+.+++.
T Consensus 104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~---------------------------~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE---------------------------RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred CCCccchHHHHHHHhCCHHHHHHHHHHHHh---------------------------CcchHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999988764 355566777777777666543
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.04 E-value=0.79 Score=47.40 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=78.4
Q ss_pred cCCHHHHHHHHHhcC-CCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHH
Q 046257 528 KGNIESASEVFKRQR-KRDLVS--WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~-~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
.|+.++|.+-|+.|. .|.... ...|.-.--+.|..+.|...-++.-+ ..|. .....+++...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 466777777777665 232211 22222223345666666666665554 4444 34556666666677777777777
Q ss_pred HHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 604 FDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 604 ~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
.+.-....-+.++..--.--+-+-.+ |.+.++.=| .. +.=.+-...++.|+-...-+.-+..|.+.|
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAk------A~s~ldadp---~~----Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAK------AMSLLDADP---AS----ARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHH------HHHHhcCCh---HH----HHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 76655444455544322211111111 222222111 00 000011125666666666666677777777
Q ss_pred CchHHHHHHHHHhh
Q 046257 684 HWQERARVRKLMND 697 (838)
Q Consensus 684 ~~~~a~~~~~~m~~ 697 (838)
+..++.++++.+-+
T Consensus 278 ~~rKg~~ilE~aWK 291 (531)
T COG3898 278 NLRKGSKILETAWK 291 (531)
T ss_pred chhhhhhHHHHHHh
Confidence 77777777776643
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.061 Score=53.91 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=75.0
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh-cC--CHHHHHHHHhhCCCCCCHHHHHHHH
Q 046257 580 DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR-AG--MLEKAMDIINRMPFAASATVWRTVL 656 (838)
Q Consensus 580 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~G--~~~~A~~~~~~m~~~~~~~~w~~ll 656 (838)
|...|..|..+|...|+.+.|..-|....+-.| ++++.+..+...+.. +| .-.+|.++|+++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a------------- 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQA------------- 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-------------
Confidence 345677777777777777777777776653322 244555556555543 23 345788888887
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 046257 657 AACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVK 701 (838)
Q Consensus 657 ~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 701 (838)
+.+||.|..+...|+..+...|++.+|...++.|.+....
T Consensus 220 -----l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 220 -----LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred -----HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999999999999875543
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.97 E-value=0.024 Score=44.16 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccC-CHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAG-LVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g-~~~~a~~~~~~m~ 608 (838)
+...|..+...+...|++++|+..|++.++ +.|+. ..|..+..++...| ++++|.+.++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 456788888889999999999999999888 56764 56777778888888 6889998888776
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=3.2 Score=46.84 Aligned_cols=113 Identities=17% Similarity=0.205 Sum_probs=82.8
Q ss_pred CChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 313 FDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 313 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
....+.+--+.-+...|+..+|.++-.+.+ -||-..|--=+.+++..+++++-+++-+.+.. +.-|
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy------- 747 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY------- 747 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc-------
Confidence 333444555556677889999999999988 88888888888899999999888777666653 2222
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYR 468 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 468 (838)
.-.+..+.+.|+.++|.+.+.....-. -...+|.+.|++.+|.++--
T Consensus 748 ------------------------~PFVe~c~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 748 ------------------------LPFVEACLKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ------------------------hhHHHHHHhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHH
Confidence 135666788899999999987775422 56778888888888877643
No 202
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.90 E-value=1.4 Score=52.15 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=103.3
Q ss_pred cCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHH
Q 046257 426 KGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHAC 505 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 505 (838)
.+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+.-+..+|+..
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------- 948 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------- 948 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH-------------
Confidence 456777777776664 334555555556678888888775 68887777777666533
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH--
Q 046257 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGIT-- 583 (838)
Q Consensus 506 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-- 583 (838)
+.+.. .++--.-+|.+||+.++|.+ +|...|++++|+.+..+|.. .-|...
T Consensus 949 L~~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~ 1001 (1265)
T KOG1920|consen 949 LREEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVIL 1001 (1265)
T ss_pred HHHhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHH
Confidence 11111 11112336889999999876 45567888888888887743 223322
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
--.|..-+...++.-+|-++...-.. . +.--+..|+++-.+++|..+....
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 24566777788888888877765431 1 344567888888899998887765
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.88 E-value=3 Score=44.29 Aligned_cols=343 Identities=14% Similarity=0.121 Sum_probs=177.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCe-eehHHHHHHH
Q 046257 285 SVIKLCATTKELRLARQLHSQVLKNGI----DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDV-VSWTAMISGH 357 (838)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-~~~~~li~~~ 357 (838)
..+..+...|.+.+|+.+++.+...=+ ..+..+|+.++-++++.= |-++.+ .-|+ .-|--||..|
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--------fLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--------FLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--------HHHHHHhcccccChHHHHHHHHH
Confidence 345566678888888888877765543 478888888887776543 222221 1122 2244555555
Q ss_pred HHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCCh-----h-HHHHHHHHhhccCCcc-hhhHHHHHHHHcCCHH
Q 046257 358 LQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSP-----F-QVHAHIIKTNYEKSFS-VGTALLNAYVKKGILD 430 (838)
Q Consensus 358 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~Li~~y~~~g~~~ 430 (838)
.+.=..-++. .=..+.|...-+..++....-... + ++.....+.-+.|+-. +...|+.-+.+ +.+
T Consensus 205 ~kki~~~d~~------~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 205 LKKIHAFDQR------PYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHhhc------hHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 4432111110 001122333223332222111111 1 4444444444444432 23344444443 444
Q ss_pred HHHHHHHhcC--------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh----------hHHHHHHHhcCC
Q 046257 431 EAAKVFELID--------EKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF----------TFSSVINACTAP 492 (838)
Q Consensus 431 ~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------t~~~ll~a~~~~ 492 (838)
++..+.+.+. +.=+.++..++...++.++..+|-+.+.-+.- +.|+.. ++..++ |..-
T Consensus 277 ~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv--~~DD 352 (549)
T PF07079_consen 277 QVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIV--CEDD 352 (549)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHH--hcch
Confidence 4444444332 23345788888889999999999887766543 334432 111111 1011
Q ss_pred hhhHHHH---HHHHHHHHHhcCCCchhHHHHH---HHHHHhcCC-HHHHHHHHHhcC---CCCHHHHHHHHH----HHHH
Q 046257 493 SAAVEQG---KQFHACSIKAKLNNALCVSSAL---VTMYSKKGN-IESASEVFKRQR---KRDLVSWNSMIC----GYAQ 558 (838)
Q Consensus 493 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l---i~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~----~~~~ 558 (838)
.....- ..++..+....++.- ....-| ..-|-+.|. -++|.++++.+. +-|..+-|.... +|.+
T Consensus 353 -~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~q 430 (549)
T PF07079_consen 353 -ESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQ 430 (549)
T ss_pred -HHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 111111 122222222222211 111112 223445555 677888877665 446555554322 2322
Q ss_pred c---CChHHHHHHHHHHHHcCCCCChh----HHHHHHHH--HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh
Q 046257 559 H---GHTKKALEVFKEMRRQDLEFDGI----TFIGVITA--CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR 629 (838)
Q Consensus 559 ~---g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 629 (838)
. ....+-+.+-+-..+.|+.|-.+ .-+.|..| +...|++.++.-+-.-.. .+.|++.+|..+.-.+..
T Consensus 431 aLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 431 ALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHH
Confidence 1 12334444445556778887543 33444443 356788888876655444 578999999988888888
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 630 AGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
..+++||.+++.+.| |+..+|.+
T Consensus 508 ~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhhHHHHHHHHHhCC--CchhhHHH
Confidence 899999999999996 45555543
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.79 E-value=0.011 Score=41.17 Aligned_cols=42 Identities=21% Similarity=0.471 Sum_probs=36.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSN 677 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~ 677 (838)
..+..+...|.+.|++++|++.+++. ++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~------------------l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA------------------LALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHCcCCHHHHHHhhh
Confidence 45677899999999999999999988 7889999998887764
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.77 E-value=0.075 Score=53.85 Aligned_cols=96 Identities=11% Similarity=0.130 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM----EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
..|...+......|++++|...|+..++.+ |+. ..+-.+..+|...|++++|...|+++
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v-------------- 206 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV-------------- 206 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------
Confidence 345555555566799999999999999766 543 35667889999999999999999987
Q ss_pred HHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 658 ACRLISLQP---HDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 658 ~c~~~~l~P---~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++..| ..+.++..++.+|...|++++|.++++...+.
T Consensus 207 ----v~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 207 ----VKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred ----HHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33334 46777788899999999999999999988753
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.69 E-value=1.8 Score=40.20 Aligned_cols=129 Identities=9% Similarity=0.087 Sum_probs=100.7
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh---
Q 046257 509 AKLNNALCVSSALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--- 581 (838)
Q Consensus 509 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--- 581 (838)
....|++..--.|.......|+..+|...|++.. ..|....-.+..+....+++..|..+++.+.+. .|+.
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~p 160 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSP 160 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCC
Confidence 3445666666678888999999999999998765 457777778888888899999999999999884 3542
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.+...+..++...|...+|..-|+....- -|+...-.-....+.+.|+.++|..-+..
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 35666778889999999999999998843 36666555556788999999888765443
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=5.3 Score=45.20 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
.+--+.-+..-|+..+|.++-.+.+-||-..|---+.+++..+++++-.++-+.+. + ++-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccH
Confidence 33444456678999999999999999999999999999999999987766655442 2 56677788999999999
Q ss_pred HHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 598 DEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
+||.+|+.+.. | +.-.+++|.+.|++.+|.+.--+
T Consensus 761 ~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999987543 2 22578999999999999888654
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.57 E-value=0.17 Score=46.37 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=74.1
Q ss_pred HHHcCChHHHHHHHHHHHHc--C-CCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCC
Q 046257 556 YAQHGHTKKALEVFKEMRRQ--D-LEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~--g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~ 632 (838)
....|+.+.+++.++++... | +-|+... ..-+......+..+. ......++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY--------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccC
Confidence 45677888888888888863 2 1122111 122233333343332 1245667888899999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++|.+..+++ +.++|-|...|..++.+|...|+..+|.++++.++.
T Consensus 78 ~~~a~~~~~~~------------------l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRA------------------LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHH------------------HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999987 889999999999999999999999999999988863
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.49 E-value=0.82 Score=45.98 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCCCcc---h---HHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 420 LNAYVKKGILDEAAKVFELIDEKDIV---A---WSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 420 i~~y~~~g~~~~A~~~f~~~~~~~~~---~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
...+.+.|++++|.+.|+.+....+. . .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34456789999999999998753221 1 234567788899999999999998874
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.43 Score=46.53 Aligned_cols=170 Identities=11% Similarity=0.054 Sum_probs=116.7
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCC--CCc--------chHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHH
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMED--RDS--------ITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSV 286 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~--~~~--------~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 286 (838)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++..-+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555544444444444443222 122 23456777777788888899999999887667777888888
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHH-----HHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHH
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGL-----MVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQ 359 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L-----i~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~ 359 (838)
.+.--+.||.+.|...|+.+.+..-..+....+.+ ...|.-.+++..|.+.|++++. ..|++.-|.=.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999988876544444444444 4456677889999999998874 3455555554444455
Q ss_pred cCChHHHHHHHHHhhhcCCCCCcccHHHH
Q 046257 360 NGAIDLAVNFFCQMTREGVRPNGFTYSII 388 (838)
Q Consensus 360 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 388 (838)
.|+..+|++.++.|... .|...+-.++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 68999999999999874 5555555433
No 211
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.17 Score=52.81 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=95.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcC
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G 631 (838)
-.+.|.+.|++..|...|++.... -+...+ -+.++...... . ....+..+.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~~~~~-----------~~~ee~~~~~~-~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LEYRRS-----------FDEEEQKKAEA-L--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hhcccc-----------CCHHHHHHHHH-H--------HHHHhhHHHHHHHhhh
Confidence 356788889999999999887662 111111 11122222211 1 1234566777888999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEE
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEV 711 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~ 711 (838)
++.+|++.-++. |+++|+|.-+.+.-+.+|...|.+++|...++++.+
T Consensus 272 ~~~~Ai~~c~kv------------------Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-------------- 319 (397)
T KOG0543|consen 272 EYKEAIESCNKV------------------LELDPNNVKALYRRGQALLALGEYDLARDDFQKALK-------------- 319 (397)
T ss_pred hHHHHHHHHHHH------------------HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------
Confidence 999999888877 899999999999999999999999999999999976
Q ss_pred CCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHc
Q 046257 712 KNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDA 745 (838)
Q Consensus 712 ~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~ 745 (838)
..|..+.|...|..+.+++++.
T Consensus 320 ------------~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 320 ------------LEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred ------------hCCCcHHHHHHHHHHHHHHHHH
Confidence 3577888999888888877763
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.10 E-value=0.049 Score=58.01 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh---HHHHHHHHHhcCCchHHHHHHH
Q 046257 617 MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI---YVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 617 ~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~---y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
...+..+..+|.+.|++++|...+++. ++++|++..+ |+.++.+|+..|+.++|...++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rA------------------LeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETA------------------LELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456788899999999999999999987 8999988854 9999999999999999999999
Q ss_pred HHhhC
Q 046257 694 LMNDR 698 (838)
Q Consensus 694 ~m~~~ 698 (838)
+..+.
T Consensus 137 rALel 141 (453)
T PLN03098 137 TALRD 141 (453)
T ss_pred HHHHh
Confidence 98774
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.05 E-value=0.092 Score=41.36 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=27.2
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
.|.+.+++++|.++++.+. +.+...|......|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555555555555544 22444455555555555555555555555555
No 214
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.04 E-value=5.9 Score=42.25 Aligned_cols=372 Identities=10% Similarity=0.065 Sum_probs=177.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 046257 183 STVLGVLADEGIVATAVQVHTMVIKNGG----EVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTN 258 (838)
Q Consensus 183 ~~ll~~~~~~g~~~~a~~l~~~~~~~g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~ 258 (838)
+..+.++...|.+.+|+.++++++..=+ .-+..+||.++-++++.--++ +-+.+...=..-|--||-.|.+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHH
Confidence 3445566677777777777777665433 366777777777776542111 11111111122344555555443
Q ss_pred CChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc--CcHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHH
Q 046257 259 ELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATT--KELRLARQLHSQVLKNGIDFDHN-IRTGLMVAYSKCGKMEDAS 335 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~ 335 (838)
=+.-++ -.-..+.|....+..++....-. ..+.--.+++..-.+.-+.|+-. +...|+.-..+ +.+++.
T Consensus 208 i~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~ 279 (549)
T PF07079_consen 208 IHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVG 279 (549)
T ss_pred HHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHH
Confidence 111111 00012334444444444433221 22333334444444444555432 33445555554 455555
Q ss_pred HHHHhccc-------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhh
Q 046257 336 KIFSMMRE-------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTN 408 (838)
Q Consensus 336 ~~f~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 408 (838)
.+-+.+.. ..-+.++..++...++.++..+|-+.+.-+.. +.|+...-.-++ +..
T Consensus 280 ~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kll----------ls~------ 341 (549)
T PF07079_consen 280 HFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLL----------LSP------ 341 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhh----------cCH------
Confidence 54444331 22345677888888888888888887776654 233322110000 000
Q ss_pred ccCCcchhhHHHHHHH----HcCCHHHHHHHHHhcCCCCcc-----hHHHH-HHHHHhcCC-chHHHHHHHHhhcCCCCC
Q 046257 409 YEKSFSVGTALLNAYV----KKGILDEAAKVFELIDEKDIV-----AWSAM-LAGYAQIGD-TEGAVKIYRQLTSEGVKP 477 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~~~~~~~~-----~~~~l-i~~~~~~g~-~~~A~~l~~~m~~~g~~p 477 (838)
.+|.++.+ ..-+..+-..+++.+...|+. .|-.- ..-+-+.|. -++|+++++...+ +.|
T Consensus 342 --------~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~ 411 (549)
T PF07079_consen 342 --------KVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTN 411 (549)
T ss_pred --------HHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hcc
Confidence 12222222 011122223444444443332 22211 222334454 7889999988876 333
Q ss_pred CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH--hcCCCCHHHHHHHHHH
Q 046257 478 NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFK--RQRKRDLVSWNSMICG 555 (838)
Q Consensus 478 ~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~--~~~~~~~~~~~~li~~ 555 (838)
...-.-. .-....++.+..+....--| .|+ +++.+.+-.. .+.-++...-|-|.+|
T Consensus 412 yD~ec~n---------~v~~fvKq~Y~qaLs~~~~~------rLl-------kLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 412 YDIECEN---------IVFLFVKQAYKQALSMHAIP------RLL-------KLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred ccHHHHH---------HHHHHHHHHHHHHHhhhhHH------HHH-------HHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3321111 11122223333222211000 000 0111110000 0001122233444433
Q ss_pred --HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 556 --YAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 556 --~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
+..+|++.++.-.-..+.+ +.|+..+|..+.-+......++||+.++..+ +|+...+++-|
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~dskv 532 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDSKV 532 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHHHH
Confidence 4567888888877777777 8998888887777777888999999998743 57777776544
No 215
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.95 E-value=0.52 Score=41.23 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=67.3
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCCh--hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CChhHHHHHHHHHH
Q 046257 251 MVAGYVTNELHMEAFETFNNMGLAGAELTR--STFVSVIKLCATTKELRLARQLHSQVLKNGID--FDHNIRTGLMVAYS 326 (838)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~ 326 (838)
.-.++-..|+.++|+.+|++-...|+.... ..+..+-+.+...|+.++|..+++........ .+..+...+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566778888899999888887766542 35666667777888888888888887765321 12233333445666
Q ss_pred cCCChHHHHHHHHhcccCCCeeehHHHHHHH
Q 046257 327 KCGKMEDASKIFSMMREMKDVVSWTAMISGH 357 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~ 357 (838)
..|+.++|.+.+-... .++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7788888777765544 33333444444444
No 216
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=8.4 Score=43.94 Aligned_cols=113 Identities=13% Similarity=0.255 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHcCCCC-----ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHH
Q 046257 562 TKKALEVFKEMRRQDLEF-----DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A 636 (838)
.++.+++|.+.-...+-| ........+..|++.|-++|-.-++.+|- .++.+|--+--+.+++++|
T Consensus 610 ~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~A 680 (846)
T KOG2066|consen 610 HDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKA 680 (846)
T ss_pred hhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHH
Confidence 456777877766544433 22334455566666666666666665552 2333333333445566666
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 637 MDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.++ ..|.-.|..|++-|. +-|...-.+.| -|...+...+..+|.
T Consensus 681 IefvKe---q~D~eLWe~LI~~~l------dkPe~~~~ll~----i~~~~dpl~ii~kip 727 (846)
T KOG2066|consen 681 IEFVKE---QDDSELWEDLINYSL------DKPEFIKALLN----IGEHEDPLLIIRKIP 727 (846)
T ss_pred HHHHHh---cCCHHHHHHHHHHhh------cCcHHHHHHHH----hhhcccHHHHHhcCC
Confidence 666654 678889999999863 12333333333 233366666666554
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.84 E-value=6.5 Score=41.77 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCCCchhhHHhhccCCC--CCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHH
Q 046257 24 SPFYSKKDQSLFDRSPQ--RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVH 101 (838)
Q Consensus 24 ~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 101 (838)
++..+.+-.++-+++.+ .|+.+|..||.-|-..|..++..+.+++|... .+.-+.+|..-+.+=....+++....++
T Consensus 21 ~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf 99 (660)
T COG5107 21 SDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLF 99 (660)
T ss_pred ccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHH
Confidence 33445555588888854 37889999999999999999999999999742 2333445666666555567888888999
Q ss_pred HHHHHhCCCCChhHHHHHHHH
Q 046257 102 CECVKSGFARDVNVSTSLVDL 122 (838)
Q Consensus 102 ~~~~~~g~~~~~~~~~~li~~ 122 (838)
.+.++..+. ...|...++-
T Consensus 100 ~rCL~k~l~--ldLW~lYl~Y 118 (660)
T COG5107 100 GRCLKKSLN--LDLWMLYLEY 118 (660)
T ss_pred HHHHhhhcc--HhHHHHHHHH
Confidence 988877554 5556655543
No 218
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.79 E-value=1.4 Score=40.06 Aligned_cols=121 Identities=19% Similarity=0.271 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC
Q 046257 519 SALVTMYSKKGNIESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAG 595 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 595 (838)
..+|..+.+.+.......+++.+.. .+....|.++..|++.. .++.++.++. .++......++..|...+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 3456666677777777777776652 34567888888888764 4555555553 245566777899999999
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc-CCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA-GMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
.++++..++..+. . |...++.+... ++.+.|.+++.+- .+...|..++..|
T Consensus 84 l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 84 LYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 9999999987763 1 44455555555 8999999999873 3556787777664
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.69 E-value=0.23 Score=53.14 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCC-------ceeEEEECCEEEEEe-eCCCCCCChHHHHHHHHHHHH
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEA-------GYSWIEVKNKTYSFL-AGDISHPQSNQIYSKLEELST 740 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~-------~~s~i~~~~~~~~f~-~~~~~~~~~~~i~~~l~~l~~ 740 (838)
.+...+++.+|....+-+++ ++-+..++..+-..+ -.+..++.+..+.++ +|+.. ...+-....+...+
T Consensus 246 igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e--~v~~al~~ae~~r~ 322 (453)
T PLN03098 246 IGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKE--SVTLAMQKAERYRT 322 (453)
T ss_pred HHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHH--HHHHHHHHhHHHHH
Confidence 34455667777655554444 333344443322111 123334455555554 34432 23444566666777
Q ss_pred HHHHcCc
Q 046257 741 RLKDAGY 747 (838)
Q Consensus 741 ~~~~~g~ 747 (838)
++.+.|+
T Consensus 323 ~L~~r~V 329 (453)
T PLN03098 323 ELLKRGV 329 (453)
T ss_pred HHHHcCc
Confidence 8888875
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.56 E-value=0.46 Score=41.97 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
..++.++|.++++.|+.+....+.+..= |+.++...- .+. ......+.|+.....+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc----------cCCCCCCCCCHHHHHHHHH
Confidence 4456666666666666666665554432 222221000 000 1123345567777777777
Q ss_pred HHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHhcc
Q 046257 626 LYSRAGMLEKAMDIINRM----PFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m----~~~~~~~~w~~ll~~c~~~~l 664 (838)
+|+..|++..|.++++.. ++.-+...|..|+.=|-++.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 777777777777776654 444446678777777654443
No 221
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.54 E-value=7 Score=40.79 Aligned_cols=221 Identities=17% Similarity=0.157 Sum_probs=138.5
Q ss_pred HcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcC-CCCCCHh--hHHHHHHH--hcCChhhH
Q 046257 425 KKGILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE-GVKPNEF--TFSSVINA--CTAPSAAV 496 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~--t~~~ll~a--~~~~~~~~ 496 (838)
+.|..+.|+..-+..-+. -.-.|.+.+...+..|+++.|+++++.-+.. -+.++.. .-..+|.+ -+..+.+.
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 566666666666555432 2245777888888888888888888776553 2344432 22233332 22222444
Q ss_pred HHHHHHHHHHHHhcCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 497 EQGKQFHACSIKAKLNNALCVS-SALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~-~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
..++..-....|. .||..-. ..-...|.+.|++.++-++++.+. +|....|... .+++.|+ .++.-+++..
T Consensus 246 ~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 246 ASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHHHH
Confidence 5555554444443 3332221 122456889999999999999887 4555544332 3445554 4444444443
Q ss_pred H-cCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc-CCHHHHHHHHhhCCCCCCHH
Q 046257 574 R-QDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA-GMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 574 ~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-G~~~~A~~~~~~m~~~~~~~ 650 (838)
. ..++||+ .+...+..+-...|++..|..--+... ...|....|..|.|.-.-. |+-+++...+-+.--.|-..
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 2 1377875 567778888888999988887766665 4578889999999887654 99999999998764444444
Q ss_pred HHHH
Q 046257 651 VWRT 654 (838)
Q Consensus 651 ~w~~ 654 (838)
.|.+
T Consensus 397 aW~a 400 (531)
T COG3898 397 AWTA 400 (531)
T ss_pred cccc
Confidence 4543
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.16 E-value=0.19 Score=46.09 Aligned_cols=65 Identities=23% Similarity=0.327 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCChhH
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR-----QDLEFDGIT 583 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 583 (838)
..++..+...|++++|..+.+.+. +-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345556666777777777776655 33566777777777777777777777766542 366665543
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.94 Score=45.64 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=65.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCChhHHH
Q 046257 512 NNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHG---HTKKALEVFKEMRRQDLEFDGITFI 585 (838)
Q Consensus 512 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~ 585 (838)
+.|..-|--|...|...|+.+.|..-|.+.. .+|...+..+..++.... ...++.++|++++. .+|+.++-.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 4567777777788888888888887776543 556666666666544332 34567778888877 567665433
Q ss_pred -HHHHHHhccCCHHHHHHHHHHHHh
Q 046257 586 -GVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 586 -~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.|..++...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 344467777888888888887763
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.02 E-value=0.1 Score=41.81 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC---CC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQ--DLE---FD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.+|+.+...|...|++++|++.|++..+. -.. |+ ..++..+...+...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666667777776666665542 011 12 2456666667777777777777776654
No 225
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.98 E-value=6.3 Score=41.85 Aligned_cols=169 Identities=13% Similarity=0.086 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CH----HHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046257 520 ALVTMYSKKGNIESASEVFKRQRKR---DL----VSWNSMICGYAQ---HGHTKKALEVFKEMRRQDLEFDGITFIGVIT 589 (838)
Q Consensus 520 ~li~~y~k~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 589 (838)
.|+-.|-...+++.-.++++.+... ++ ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444688899999999999988733 21 112233445556 7999999999999777666777778777665
Q ss_pred HHh----c-----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 590 ACT----H-----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 590 a~~----~-----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
.|- . ....++|...+.+. +.+.|+..+--.++-++..+|...+...-+++. .+.++++++.-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i-----~~~l~~llg~kg 297 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKI-----GVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHH-----HHHHHHHHHhhc
Confidence 542 1 22467788877754 356676665555667777777755555444443 245666665421
Q ss_pred HhccCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 661 LISLQP-HDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 661 ~~~l~P-~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.+++ ++--.+..+..++.-.|+.++|.+..+.|...
T Consensus 298 --~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 298 --SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred --cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222 13334456777888899999999999999754
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.97 E-value=0.37 Score=47.46 Aligned_cols=111 Identities=18% Similarity=0.281 Sum_probs=86.1
Q ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCC---------
Q 046257 533 SASEVFKRQR--KRDLVSWNSMICGYAQH-----GHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGL--------- 596 (838)
Q Consensus 533 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~--------- 596 (838)
..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|-.+|..||+.+-+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3466777777 77888999999888654 5667777788999999999999999999987755442
Q ss_pred -------HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 046257 597 -------VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML-EKAMDIINRMP 644 (838)
Q Consensus 597 -------~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~-~~A~~~~~~m~ 644 (838)
-+=|..++++|. .+|+.||.++-..++.+++|.|.. .+-..++--||
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234778999996 889999999999999999999864 34444544454
No 227
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.85 E-value=9.8 Score=39.88 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHH
Q 046257 322 MVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNF 369 (838)
Q Consensus 322 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 369 (838)
|.-+...|....|.++..+.. .||-.-|-..|.+|+..+++++-..+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~f 230 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKF 230 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 334444555555555555555 55555555556666666665554443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.83 E-value=0.12 Score=41.31 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC------C---CC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR------K---RD-LVSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~------~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
+++.+...|...|++++|++.|++.. . ++ ..+++.|...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555566666666666666555432 1 11 2445556666666666666666665544
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.63 E-value=0.56 Score=46.22 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=66.4
Q ss_pred hhhHHhhccCC--CCCcccHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCCh-------
Q 046257 29 KKDQSLFDRSP--QRNFVEYNRLLFEYCR-----DSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDH------- 94 (838)
Q Consensus 29 ~~a~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~------- 94 (838)
-.-++.|...+ .++-.+|-+.+..+.. .++.+--...++.|.+-|+.-|..+|..||..+-+-.-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34567788887 6787888887777653 456666667788899999999999999998887543211
Q ss_pred ---------hhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 046257 95 ---------VFGRQVHCECVKSGFARDVNVSTSLVDLYMRTN 127 (838)
Q Consensus 95 ---------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 127 (838)
.-+..++++|...|+-||-.+-..|++++.+.+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 114455555555566666655555555555544
No 230
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.58 E-value=0.59 Score=41.30 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
|..++.+++-++++.|+++....+.+..-.-|+ .+-...+. --......|+..+..+++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 345778899999999999999999876542221 11111111 11233477899999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLY 627 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 627 (838)
.|++..|.++.+...+.|+++-+...|..|..-.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999998999776777787776433
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=92.98 E-value=3.2 Score=44.75 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
...+|.++-++..+.+ .-|......+..+....|+.+.|...|++.. .+.|+. ..|......+.-+|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567888888888843 2356666667777777888999999999886 567875 4566666777889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH--HHHHHhcCCchHHHHHHH
Q 046257 640 INRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL--SNMYAATGHWQERARVRK 693 (838)
Q Consensus 640 ~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l--~~~y~~~g~~~~a~~~~~ 693 (838)
+++. ++++|.-..+-+.- .++|...+ .++|.+++-
T Consensus 395 i~~a------------------lrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 395 IDKS------------------LQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHH------------------hccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 9986 56777554444433 33566654 566666654
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=92.90 E-value=1.6 Score=47.05 Aligned_cols=130 Identities=8% Similarity=0.071 Sum_probs=92.6
Q ss_pred HHH--HHHHHHHHHcC-----ChHHHHHHHHHHH-HcCCCCChh-HHHHHHHHHhc---------cCCHHHHHHHHHHHH
Q 046257 547 VSW--NSMICGYAQHG-----HTKKALEVFKEMR-RQDLEFDGI-TFIGVITACTH---------AGLVDEGQQYFDIMV 608 (838)
Q Consensus 547 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~-~~g~~pd~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 608 (838)
..| ..++.|....- ..+.|+.+|.+.. .+.+.|+.. .|..+..++.. .....+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655421 3567889999998 223788753 34333332211 224556777777666
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
.+.| |......+..+++-.|+++.|...|++. ++++|+.+.+|...+.+..-+|+.++
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA------------------~~L~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQA------------------KIHSTDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHH------------------hhcCCccHHHHHHHHHHHHHcCCHHH
Confidence 3334 4555666777778888999999999988 78999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 046257 688 RARVRKLMND 697 (838)
Q Consensus 688 a~~~~~~m~~ 697 (838)
|.+..++..+
T Consensus 391 a~~~i~~alr 400 (458)
T PRK11906 391 ARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHhc
Confidence 9998887443
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.87 E-value=8 Score=37.69 Aligned_cols=62 Identities=13% Similarity=-0.123 Sum_probs=38.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCC--CCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCC
Q 046257 48 RLLFEYCRDSLHQEALNLFLGIRRLGL--PLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGF 109 (838)
Q Consensus 48 ~li~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 109 (838)
.....+...|++.+|+..|+.+...-. +--......+..++-+.|+...|...++..++.-+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 344556678888888888888876521 11223345566667777777777777777766543
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.80 E-value=10 Score=36.94 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-HHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCC----ChhHHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRK--RD-LVSWNSMIC-GYAQHGHTKKALEVFKEMRRQDLEF----DGITFIGV 587 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~l 587 (838)
..+..+...+...++++.+.+.+..... ++ ...+..... .+...|+.++|...|++... ..| ....+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 173 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLAL 173 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHh
Confidence 3344445556666677777777776652 22 223333333 68888999999999998855 444 22334444
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ 665 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~ 665 (838)
...+...+..+++...+...... .|+ ...+..+...+...|.+++|...+... ++..
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~~ 232 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKA------------------LELD 232 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHH------------------HhhC
Confidence 44466788889999888887733 233 456777778888888888888888876 4555
Q ss_pred CCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 666 PHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 666 P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
|.....+..++..+...|.++++...+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54455666677777777778888877776654
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.79 E-value=5.6 Score=35.94 Aligned_cols=84 Identities=13% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHH
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDL 365 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~ 365 (838)
++..+...+.......+++.+.+.+ ..+....+.++..|++.+ ..+....+.. ..+......++..|.+.+.+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcCcHHH
Confidence 3444444455555555555555554 245556666666666553 2333334332 1233444456666666666666
Q ss_pred HHHHHHHhh
Q 046257 366 AVNFFCQMT 374 (838)
Q Consensus 366 A~~l~~~m~ 374 (838)
+.-++.++.
T Consensus 88 ~~~l~~k~~ 96 (140)
T smart00299 88 AVELYKKDG 96 (140)
T ss_pred HHHHHHhhc
Confidence 666666653
No 236
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=15 Score=38.79 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=99.4
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCcc-hHHHHHHHH--HhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHH
Q 046257 422 AYVKKGILDEAAKVFELIDEKDIV-AWSAMLAGY--AQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 422 ~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 498 (838)
.+.-.|++++|...--.+..-|.. .+...+.+. --.++.+.|...|++.+. +.|+...-.+.-..+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~--------- 246 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMP--------- 246 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhH---------
Confidence 344567777777766555543332 233333333 336778888888888765 456655433222111
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-------KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
......... .+...|.|++..|.+.+.+.. +++...|........+.|+.++|+.--++
T Consensus 247 --k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 247 --KKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred --HHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 111111111 234678999999999998765 23455677777788899999999999888
Q ss_pred HHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 572 MRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 572 m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
... +.|.-+ .+..-..++...+.+++|.+.|+...
T Consensus 313 Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 313 ALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred hhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 444321 23333345556788999999998876
No 237
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.60 E-value=4.3 Score=39.55 Aligned_cols=142 Identities=14% Similarity=0.203 Sum_probs=83.7
Q ss_pred HHhcCCHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhc---
Q 046257 525 YSKKGNIESASEVFKRQRK--R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTH--- 593 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~--- 593 (838)
+...|++++|.+.|+.+.. | -....-.++.+|-+.|++++|+..|++.++ .-|++ ..+...+.+.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHHHh
Confidence 4567888888888887761 2 123455667788888888888888888877 34553 222222222221
Q ss_pred ----------cCCHHHHHHHHHHHHhcCCccCCCchH------------------HHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 594 ----------AGLVDEGQQYFDIMVNEHHIYPTMEHY------------------SCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 594 ----------~g~~~~a~~~~~~m~~~~~~~p~~~~y------------------~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
.+...+|...|+..++.+ |+.... -.+.+.|.+.|.+..|..-++.+
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~y---P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v-- 167 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRY---PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV-- 167 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH--
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHC---cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH--
Confidence 223456777888777665 443321 12456777888887777776665
Q ss_pred CCCHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHhcCCchHHH
Q 046257 646 AASATVWRTVLAACRLISLQPHD---SAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~---~~~y~~l~~~y~~~g~~~~a~ 689 (838)
++--|+. ..+...|...|.+.|..+.+.
T Consensus 168 ----------------~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 168 ----------------IENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp ----------------HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ----------------HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3333432 345677888899999888444
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=1 Score=47.24 Aligned_cols=138 Identities=12% Similarity=0.167 Sum_probs=83.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|.|.|++..|...|++... | + -|...-+.++ .... ...-..+++.+.-++.+.+.+.+|.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~-----~---l-~~~~~~~~ee-------~~~~-~~~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVS-----F---L-EYRRSFDEEE-------QKKA-EALKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHH-----H---h-hccccCCHHH-------HHHH-HHHHHHHhhHHHHHHHhhhhHHHHH
Confidence 4578899999999988776420 0 0 0000001111 1110 0111234556666667777777777
Q ss_pred HHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 046257 602 QYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYA 680 (838)
Q Consensus 602 ~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~ 680 (838)
+..+.... +.| |+...--=..+|.-.|+++.|+..|+++ ++++|+|-.+-..|+.+-.
T Consensus 278 ~~c~kvLe---~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka------------------~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 278 ESCNKVLE---LDPNNVKALYRRGQALLALGEYDLARDDFQKA------------------LKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHh---cCCCchhHHHHHHHHHHhhccHHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHH
Confidence 77776652 223 3333333356777788889999998887 7888888888888887777
Q ss_pred hcCCchHH-HHHHHHHhh
Q 046257 681 ATGHWQER-ARVRKLMND 697 (838)
Q Consensus 681 ~~g~~~~a-~~~~~~m~~ 697 (838)
+..+..+. .++|..|=.
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 66666555 677777743
No 239
>PRK15331 chaperone protein SicA; Provisional
Probab=92.50 E-value=0.75 Score=42.13 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
+-..|++++|+.+|.-+. .-|..-|..|..+|-..+++++|+..|......+ .-|...+.....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 346799999999998665 3466778888888889999999999998877743 234555666777788889999999
Q ss_pred HHHHHHHh
Q 046257 602 QYFDIMVN 609 (838)
Q Consensus 602 ~~~~~m~~ 609 (838)
..|+..+.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988873
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.44 E-value=0.98 Score=40.40 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhcc
Q 046257 526 SKKGNIESASEVFKRQRKR------DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHA 594 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~ 594 (838)
.+.|++++|.+.|+.+..+ ....--.++.+|.+.|++++|+..+++.++ +.|++ +-|.....++++-
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHH
Confidence 4679999999999988732 234455688899999999999999999999 67764 5566666665543
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=4.9 Score=40.55 Aligned_cols=143 Identities=8% Similarity=0.034 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 533 SASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 533 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
.-.+.+++...+....--.........|+..+|..+|...... .|+ ...-..+..++...|++++|..++..+-.+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 3444555555442222223334556677777888888777773 333 3445566667777777777777776653111
Q ss_pred CccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 612 HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 612 ~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
...-+-. +...++++.++...|+......- +.-+|+|...-+.|+..|-..|+.++|.+.
T Consensus 199 ----~~~~~~~----------l~a~i~ll~qaa~~~~~~~l~~~------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 199 ----QDKAAHG----------LQAQIELLEQAAATPEIQDLQRR------LAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred ----hhhHHHH----------HHHHHHHHHHHhcCCCHHHHHHH------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111 12224444444434444333333 344899999999999999999999999887
Q ss_pred HHHHhh
Q 046257 692 RKLMND 697 (838)
Q Consensus 692 ~~~m~~ 697 (838)
+=.+..
T Consensus 259 Ll~~l~ 264 (304)
T COG3118 259 LLALLR 264 (304)
T ss_pred HHHHHH
Confidence 766643
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.68 E-value=1.5 Score=43.59 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-chHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EHYSC 622 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~ 622 (838)
.|+.-+. +.+.|++.+|...|...++. -|+. ..+-.|..++...|++++|..+|..+.++++-.|.. +.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3555443 34567788888888888874 3432 245567788888888888888888888887766654 66777
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
|...+++.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 788888888888888888776
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.41 E-value=19 Score=37.08 Aligned_cols=216 Identities=14% Similarity=0.077 Sum_probs=120.8
Q ss_pred HHcCCHHHHHHHHHhcCCC----Cc--------chHHHHHHHHHhcCCchHHHHHHHHhhcC--------CCCCCH----
Q 046257 424 VKKGILDEAAKVFELIDEK----DI--------VAWSAMLAGYAQIGDTEGAVKIYRQLTSE--------GVKPNE---- 479 (838)
Q Consensus 424 ~~~g~~~~A~~~f~~~~~~----~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~---- 479 (838)
.+.|+.+.|..++.+.... +. ..||.-...+.+..++++|..++++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3678888888888766531 11 34565555555554788877776664332 223333
Q ss_pred -hhHHHHHHHhcCC--hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC--CHHHHHHHH
Q 046257 480 -FTFSSVINACTAP--SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KR--DLVSWNSMI 553 (838)
Q Consensus 480 -~t~~~ll~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~--~~~~~~~li 553 (838)
.++..+..++-.. ....+.+..+...+.. .++..+.++---++...+.++.+.+.+++.+|. .. ....+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 2444555555444 1234445555555533 333344555455666777889999999998886 22 335566666
Q ss_pred HHH---HHcCChHHHHHHHHHHHHcCCCCChh--H---HHHHHHHHhccC------CHHHHHHHHHHHHhcCCccCCCch
Q 046257 554 CGY---AQHGHTKKALEVFKEMRRQDLEFDGI--T---FIGVITACTHAG------LVDEGQQYFDIMVNEHHIYPTMEH 619 (838)
Q Consensus 554 ~~~---~~~g~~~~A~~l~~~m~~~g~~pd~~--t---~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~ 619 (838)
..+ ..+ ....|...+.++...-+.|... . +...+-.+...+ .++...++++...+..+-+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 555 333 3566777777777665666542 1 111122222222 255666666644433333334444
Q ss_pred HHHH-------HHHHHhcCCHHHHHHHHh
Q 046257 620 YSCM-------VDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 620 y~~l-------v~~l~r~G~~~~A~~~~~ 641 (838)
-.++ +.-..+++++++|.++++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 3333 344667889999999987
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.15 E-value=2.6 Score=43.50 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=84.5
Q ss_pred HhcCCHHHHHHHHHhcC------CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CCCCCh----
Q 046257 526 SKKGNIESASEVFKRQR------KRD------LVSWNSMICGYAQHGHTKKALEVFKEMRRQ--------DLEFDG---- 581 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~------~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~---- 581 (838)
.+.|+++.|..++.+.. .|+ ...||.-...+.+..++++|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677777777776554 222 134555555544443788877777665442 233443
Q ss_pred -hHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC--HHHHHHH
Q 046257 582 -ITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS--ATVWRTV 655 (838)
Q Consensus 582 -~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~--~~~w~~l 655 (838)
.++..++.++...+. +++|.++++.+.++++-+| ..+---++.+.+.++.+++.+.+.+|-...+ ...|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 356667777776665 4567778888877765444 3444446777778899999999988843333 3566666
Q ss_pred HHHHH-HhccCC
Q 046257 656 LAACR-LISLQP 666 (838)
Q Consensus 656 l~~c~-~~~l~P 666 (838)
+...+ +.+..|
T Consensus 162 l~~i~~l~~~~~ 173 (278)
T PF08631_consen 162 LHHIKQLAEKSP 173 (278)
T ss_pred HHHHHHHHhhCc
Confidence 66654 444444
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.06 E-value=3.9 Score=45.66 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=79.8
Q ss_pred cCCHHHHHHHHHhcCC--CCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcC--CC-CChhHHHHHHHHHhccCCHHHHH
Q 046257 528 KGNIESASEVFKRQRK--RDLVSWNSM-ICGYAQHGHTKKALEVFKEMRRQD--LE-FDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g--~~-pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
....+.|.++++.+.. |+...|.-. ...+...|+.++|++.|++..... .+ .....+--+...+.-.+++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4678889999988873 776666544 345678899999999999766411 11 12344555666777889999999
Q ss_pred HHHHHHHhcCCccCCCchHHHHHHHHHhcCCH-------HHHHHHHhhCC
Q 046257 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML-------EKAMDIINRMP 644 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~-------~~A~~~~~~m~ 644 (838)
++|..+.+.....+...+|.. .-.+...|+. ++|.++|.+.|
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999866544333333322 3455667777 88999998875
No 246
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.02 E-value=7.4 Score=40.29 Aligned_cols=92 Identities=12% Similarity=0.243 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhc-cCC-
Q 046257 531 IESASEVFKRQRK-------RDLVSWNSMICGYAQHGH----TKKALEVFKEMRRQDLEFDGI-TFIGVITACTH-AGL- 596 (838)
Q Consensus 531 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~-~g~- 596 (838)
+..|..+|+.|++ ++-.++.+|+.. ..++ .+++..+|+.+.+.|+..+.. -+.+-+-++.. ...
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4456677777762 233455555544 2222 356778888888888887643 34444433332 222
Q ss_pred -HHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 597 -VDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 597 -~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
+..+.++++.+. +.|+++...||..+.-
T Consensus 197 ~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 457788888887 5599999999887653
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.61 E-value=1.7 Score=38.85 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=22.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|++++|.+.|+.+...+...|-. ...-.++++|.+.|++++|...+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555444443332211 12333445555555555555444443
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=3.3 Score=42.11 Aligned_cols=160 Identities=10% Similarity=0.109 Sum_probs=90.8
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHH--HHhccCCHHHH
Q 046257 528 KGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI--TFIGVIT--ACTHAGLVDEG 600 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~--a~~~~g~~~~a 600 (838)
.|+.-+|-..++++. +.|..+|+---.+|..+|+.+.-...+++.... ..||.- +|..=+. ++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 456666666666654 457777777777777777777777777777653 344542 2222222 23456777777
Q ss_pred HHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 601 QQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
.+.-++.. .+.| |.-.--++...+.-.|+++|+.+|+.+-. ..|. .-.---+-+|-..+-.|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te-----d~Wr---------~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE-----DDWR---------QSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc-----cchh---------hhhHHHhhhhHHHHHhh
Confidence 77666554 3333 22233345566777777777777776542 1110 00000123455566667
Q ss_pred HhcCCchHHHHHHHHHhhCCCccCCc
Q 046257 680 AATGHWQERARVRKLMNDRKVKKEAG 705 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~g~~~~~~ 705 (838)
...+.++.|.+++..=.-+.+.|..+
T Consensus 258 iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hcccchhHHHHHHHHHHHHHhhccch
Confidence 77777888888877654444444443
No 249
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.04 E-value=42 Score=38.69 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=46.5
Q ss_pred hHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 046257 215 SVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 215 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
.++...|+.+.-.|++++|-...-.|-..+..-|.--+.-+...++......+ +....-..+...|-.+|-.+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45666777777778888888877777777777777777777666665443332 2222122344556666666554
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.97 E-value=2 Score=43.40 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCChhHHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR-----QDLEFDGITFIGV 587 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~l 587 (838)
.++..++..+..+|+.+.+.+.+++.. +-|...|..+|.+|.+.|+...|+..|+++.. .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 456678889999999999999998876 45788999999999999999999999998766 5777776655544
Q ss_pred HHH
Q 046257 588 ITA 590 (838)
Q Consensus 588 l~a 590 (838)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.86 E-value=20 Score=34.75 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR-----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVIT 589 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 589 (838)
..........+...+.+..+...+.... ......+..+...+...++..++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4455566677888888888888877653 34556777788888888999999999999988443331 22222333
Q ss_pred -HHhccCCHHHHHHHHHHHHhcCCccC----CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 590 -ACTHAGLVDEGQQYFDIMVNEHHIYP----TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 590 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
++...|..+++...+..... ..| ....+......+...|+.++|...+.+. ++.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~ 196 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA------------------LKL 196 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH------------------Hhh
Confidence 78899999999999998853 233 2223333444566788999999999877 566
Q ss_pred CCC-CchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 665 QPH-DSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 665 ~P~-~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.|. ....+..++..|...|+++++...+......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 666 5788889999999999999999999888764
No 252
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.40 E-value=2.7 Score=43.90 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=36.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcC-------C--CCcchHHHHHHHHHhcCCchHHHHHHHHhhc
Q 046257 417 TALLNAYVKKGILDEAAKVFELID-------E--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
-+|.+.|.-..++++|+..+.+-. . ....++-+|..+|...|..++|+.....-.+
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 356666666677777777765322 1 1334666788888888888888777665544
No 253
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.31 E-value=2.9 Score=41.67 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.|+..+.. ...|++.+|..-|..-++.|.-.+ ....+-.|...+...|++++|...|..+- +-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~---------------k~ 207 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVV---------------KD 207 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHH---------------Hh
Confidence 46655544 467889999999999997763322 23345568999999999999999998761 00
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
.--.|+-|..+.-|+.+..+.|+-++|..+++...++-
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 22356788999999999999999999999999987653
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.31 E-value=12 Score=32.81 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++...-++.+...|+-|.-.++.... +.-+..+|...+-++++|.+.|...++.+++++.-+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l------------------~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNEL------------------KKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----------------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH------------------hhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44455567777788777776776654 111223788999999999999999999999999999
Q ss_pred CCCc
Q 046257 698 RKVK 701 (838)
Q Consensus 698 ~g~~ 701 (838)
+|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 9986
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.29 E-value=60 Score=39.43 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=50.0
Q ss_pred CChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhh
Q 046257 329 GKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTN 408 (838)
Q Consensus 329 g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~ 408 (838)
+++++|..-+..+. ...|+-.+..--++|.+.+|+.++ +|+..++.-+..+++. .+...
T Consensus 894 ~ry~~AL~hLs~~~----~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~---------hL~~~ 952 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG----ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD---------HLREE 952 (1265)
T ss_pred HHHHHHHHHHHHcC----ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH---------HHHHh
Confidence 44555555444443 233444555555666777777664 3444444433333221 11110
Q ss_pred ccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046257 409 YEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLT 471 (838)
Q Consensus 409 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 471 (838)
. -++--.-+|.++|+.++|.+.+ ..+|++.+|+.+-.+|.
T Consensus 953 ~-----~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 953 L-----MSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLS 992 (1265)
T ss_pred c-----cccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhc
Confidence 0 1122344577777777776554 44566677766666553
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.26 E-value=5.8 Score=34.57 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC--chHHHHHHHHHhcCC
Q 046257 556 YAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM--EHYSCMVDLYSRAGM 632 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~G~ 632 (838)
.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|+.=++...+-.|-+... ..|.--..+|-..|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555555555555554 3332 3445555555555555555555555544333322111 012222345666778
Q ss_pred HHHHHHHHhhC
Q 046257 633 LEKAMDIINRM 643 (838)
Q Consensus 633 ~~~A~~~~~~m 643 (838)
.|.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 88888777754
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.03 E-value=15 Score=32.25 Aligned_cols=58 Identities=22% Similarity=0.410 Sum_probs=36.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 419 LLNAYVKKGILDEAAKVFELID---EKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
-++...+.|+-|.-.++...+. +.+....-.+..+|.+.|+..++-+++++..+.|++
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445556677777777776654 345555666777888888888888888888777753
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.99 E-value=12 Score=41.82 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=85.3
Q ss_pred HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHhccCCHHHHHHHHHHHHhcCCccCCCch--H
Q 046257 548 SWNSMICGYAQ----HGHTKKALEVFKEMRRQDLEFDGITFIGVI-TACTHAGLVDEGQQYFDIMVNEHHIYPTMEH--Y 620 (838)
Q Consensus 548 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--y 620 (838)
.|...+..+.. ....+.|.++++++.+ .-|+..-|...- ..+...|++++|.+.|+.......--|...| +
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 45555555543 3467889999999999 689887765443 4567789999999999976532222233332 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCc-------hHHHHHHH
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHW-------QERARVRK 693 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~-------~~a~~~~~ 693 (838)
--+...+.-.+++++|.+.+..+.-. ..|. ....++..+-.|...|+. ++|.++++
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~---s~WS--------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKE---SKWS--------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhc---cccH--------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 44567788999999999999988411 1111 111222334446666666 78888777
Q ss_pred HHhh
Q 046257 694 LMND 697 (838)
Q Consensus 694 ~m~~ 697 (838)
+...
T Consensus 372 ~vp~ 375 (468)
T PF10300_consen 372 KVPK 375 (468)
T ss_pred HHHH
Confidence 7654
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.99 E-value=0.88 Score=29.89 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.90 E-value=3.4 Score=39.15 Aligned_cols=95 Identities=12% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC------Cch
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI--TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT------MEH 619 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~ 619 (838)
.|..+..-|.+.|+.++|++.|.++.+....|.+. .+..++..+...|++.....+..+......-..+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45666677777777777777777777755555543 3556666667777777777666655421111011 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
|..+. +...|++.+|-+.|-+.+
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 234678888877776663
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.89 E-value=0.98 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD 580 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 580 (838)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678888888888888888888888888 5665
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.85 E-value=16 Score=40.30 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=89.2
Q ss_pred HHHhCCCchHHHHHHHH-HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChh
Q 046257 153 GYARNKMNDRVLELFHR-MQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVR 231 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 231 (838)
...-.++++++.++... -.-..+ | ..-...+++-+-+.|..+.|.++-. |+ ..--....++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence 33456677776655541 111111 1 3346667777777777777776532 22 12334556788999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 046257 232 DARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI 311 (838)
Q Consensus 232 ~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 311 (838)
.|.++-++.. +...|..|.....++|+.+-|.+.|.+..+ |..++-.+...|+.+.-.++-+.....|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 9988887766 556899999999999999999988887653 45555556666777766666666655541
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHh
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSM 340 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 340 (838)
++....++...|+.++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333444444555555555444
No 263
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.46 E-value=0.63 Score=30.58 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+|..|+++|...|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999843
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.43 E-value=1.4 Score=30.50 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI 582 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 582 (838)
+|..+...|...|++++|+++|++.++ ..||..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 567778888888888888888888888 567653
No 265
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.41 E-value=6.6 Score=43.25 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCC
Q 046257 283 FVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGA 362 (838)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~ 362 (838)
...+++-+.+.|-.+.|.++-.. + ..-.+...++|+++.|.++.++.. +...|..|.....++|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCC
Confidence 45555555555666655554321 1 122345567777887777765543 55678888888888888
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK 442 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 442 (838)
.+-|.+.|.+..+- ..|+-.|.-.|+.+.-.++-+....+
T Consensus 363 ~~lAe~c~~k~~d~----------------------------------------~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 363 IELAEECYQKAKDF----------------------------------------SGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHHHHCT-H----------------------------------------HHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCc----------------------------------------cccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888887776542 34555666777766666665544332
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHh
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQL 470 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m 470 (838)
+ -+|....++...|+.++..+++.+-
T Consensus 403 ~--~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G--DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c--CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 1455555666667777777776543
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.07 E-value=8.7 Score=36.77 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=96.9
Q ss_pred HHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHH
Q 046257 525 YSKKGNIESASEVFKRQR--KR-DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a 600 (838)
|-..|-..-|+-=|.+.. .| -...||-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++--.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444455555555554432 33 345677777777888888888888888877 5554 34444333445567777777
Q ss_pred HHHHHHHHhcCCccCCCchHHHHHHHHH--hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH------------HhccCC
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCMVDLYS--RAGMLEKAMDIINRMPFAASATVWRTVLAACR------------LISLQP 666 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~--r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~------------~~~l~P 666 (838)
.+=|...-.. .|+-. |.++ ++|. +.=+..+|..-+.+=-...|.--|+.-+-..- +.+...
T Consensus 153 q~d~~~fYQ~---D~~DP-fR~L-WLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQD---DPNDP-FRSL-WLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhc---CCCCh-HHHH-HHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7665544322 23222 2221 3333 33345566544432222455566766555432 111111
Q ss_pred C-------CchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 667 H-------DSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 667 ~-------~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+ -+++|.-|+.-|...|..++|..+++....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 256899999999999999999999998764
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.39 E-value=5.2 Score=34.85 Aligned_cols=85 Identities=14% Similarity=0.182 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCh--hHHHHHHHHHhccCCH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ-DLEFDG--ITFIGVITACTHAGLV 597 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~--~t~~~ll~a~~~~g~~ 597 (838)
+.+..|+++.|++.|.+.. +.+...||.-..+|.-.|+.++|++=+++.++. |-+.-. ..|.--...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4678899999999998765 568889999999999999999999999999884 222111 2355445567778999
Q ss_pred HHHHHHHHHHH
Q 046257 598 DEGQQYFDIMV 608 (838)
Q Consensus 598 ~~a~~~~~~m~ 608 (838)
+.|..=|+...
T Consensus 132 d~AR~DFe~AA 142 (175)
T KOG4555|consen 132 DAARADFEAAA 142 (175)
T ss_pred HHHHHhHHHHH
Confidence 99998888775
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.11 E-value=0.056 Score=49.46 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=62.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHH
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDL 365 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~ 365 (838)
+++.+.+.+.......+++.+.+.+...+....+.|+..|++.+..+...++++... ..-...++..+.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHHH
Confidence 455666667777777778888877766778889999999999988788877777433 2555677788888888888
Q ss_pred HHHHHHHhhh
Q 046257 366 AVNFFCQMTR 375 (838)
Q Consensus 366 A~~l~~~m~~ 375 (838)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 8888777654
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.86 E-value=47 Score=35.44 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCC---Ccc----hHHHHHHHHHh---cCCchHHHHHHHHhhcCCCCCCHhhHHHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDEK---DIV----AWSAMLAGYAQ---IGDTEGAVKIYRQLTSEGVKPNEFTFSSVIN 487 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 487 (838)
.|+-.|....+++.-.++.+.+... ++. .-....-++.+ .|+.++|++++..+....-.+++.||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3555688889999999999988764 111 11223445556 7899999999999666666777777765543
Q ss_pred H
Q 046257 488 A 488 (838)
Q Consensus 488 a 488 (838)
.
T Consensus 226 I 226 (374)
T PF13281_consen 226 I 226 (374)
T ss_pred H
Confidence 3
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.53 E-value=72 Score=37.22 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=68.5
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCcchHHHHH----HHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 046257 119 LVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLL----SGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI 194 (838)
Q Consensus 119 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 194 (838)
-+++..+...++.|..+-..-.- |...-..+. +-+-+.|++++|...|-+-... +.| +.+++-+-....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 34444555555555555443322 111112222 2234567777776666554321 112 234444444444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcc-hHHHHHHHHHhCCChHHHHHHH
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSI-TWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~n~li~~~~~~g~~~~A~~l~ 268 (838)
...-...++.+.+.|+. +...-+.|++.|.+.++.+.-.++.+...+.... -....+..+-+.+..++|..+-
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 55555566666666643 3333456777777777777766666655421111 1233444444455555554443
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.16 E-value=38 Score=33.70 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=92.4
Q ss_pred HHcCCHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHhhcC-CCCCCH--hhHHHHHHHhcCC--
Q 046257 424 VKKGILDEAAKVFELIDEKDI------VAWSAMLAGYAQIGDTEGAVKIYRQLTSE-GVKPNE--FTFSSVINACTAP-- 492 (838)
Q Consensus 424 ~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~~-- 492 (838)
.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+..+++.... +-.||. ..|...+.-+...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 478999999999999975422 23334566777899999999999997663 344443 3333333322111
Q ss_pred -hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH-HH-HHHHHHHHcCChHHHHHHH
Q 046257 493 -SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVS-WN-SMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 493 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~-~li~~~~~~g~~~~A~~l~ 569 (838)
..+...+++-+..+.. +|.-|=...-..+|......+. |... ++ .+..-|.+.|.+..|..-+
T Consensus 125 ~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~--d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 125 VTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN--DALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred cccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 0112222222111111 1111111111111211111110 1111 11 2445688889999999999
Q ss_pred HHHHHcCCCCC-hh---HHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 570 KEMRRQDLEFD-GI---TFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 570 ~~m~~~g~~pd-~~---t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
++|++. -|+ .. .+-.+..++-+.|..++|...-.-+.
T Consensus 191 ~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 191 EEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999885 333 22 35556677888888888887766654
No 272
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.95 E-value=30 Score=32.24 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=15.5
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHH
Q 046257 307 LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIF 338 (838)
Q Consensus 307 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 338 (838)
.+.+++++..++..+++.+.+.|+...-..++
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33445555555555555555555544444333
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.90 E-value=39 Score=33.61 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGY 747 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 747 (838)
=...++.|.+.|.|.-|..-++.|.+. +|.+..+.+.|..+.+-....|.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~--------------------------y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN--------------------------YPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc--------------------------cccccchHHHHHHHHHHHHHhCC
Confidence 356788999999999999999988763 55556666666666655555553
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.39 E-value=0.75 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+..+...+.+.|++++|++.+++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4566788899999999999999987
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.16 E-value=2.7 Score=42.52 Aligned_cols=62 Identities=18% Similarity=0.376 Sum_probs=56.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..+..++..+..+|+++.+.+.+++. ++++|-+...|..|...|...|+...|...++.+++
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~L------------------i~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERL------------------IELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHH------------------HhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35677889999999999999999976 889999999999999999999999999999999876
No 276
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.10 E-value=5.4 Score=41.78 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
..-+|.+.|.-..+++.|+.++.+-. --...++.+|..+|...|..++|+...+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455666666666777776665322 11345666777777777777777776665544
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.84 E-value=11 Score=41.06 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC--CchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH--DSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~--~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.-+...+-+.|+.+||.+.+++| ++..|. +-.++..|.+.|-..+++.|+..++.+-.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdL------------------lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDL------------------LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHH------------------HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34566677899999999999988 444443 5567888899999999999999999887655
Q ss_pred CCccCCcee
Q 046257 699 KVKKEAGYS 707 (838)
Q Consensus 699 g~~~~~~~s 707 (838)
...|....+
T Consensus 325 ~lpkSAti~ 333 (539)
T PF04184_consen 325 SLPKSATIC 333 (539)
T ss_pred cCCchHHHH
Confidence 444444333
No 278
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.61 E-value=20 Score=33.28 Aligned_cols=134 Identities=10% Similarity=0.013 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhH-HHHHHHHHHhCCChHHHHHHHccCCC
Q 046257 63 LNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNV-STSLVDLYMRTNNVEDGRRVFDDMNE 141 (838)
Q Consensus 63 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~ 141 (838)
++..+.+.+.+++|+...+..++..+.+.|......++ +..++-+|... .-.|++. . +....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~-~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL-G--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh-H--ccChHHHHHHHHHHH
Confidence 35566677788999999999999999988887665554 55565555443 3333332 2 222333443334433
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 046257 142 SNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIK 207 (838)
Q Consensus 142 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~ 207 (838)
+=...+..++..+...|++-+|+.+.+..... +...-..++.+....++...--.++....+
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33335777888888999999999888775321 222334455665555555544444444443
No 279
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.39 E-value=2.1 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD 580 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 580 (838)
.|..+...|...|++++|++.|++..+ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 466777788888888888888888877 5554
No 280
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.20 E-value=0.67 Score=29.84 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|..+..+|...|++++|++.+++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHH
Confidence 5777888999999999999999887
No 281
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.14 E-value=2.6 Score=37.86 Aligned_cols=54 Identities=17% Similarity=0.232 Sum_probs=47.5
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 046257 629 RAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 629 r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 700 (838)
+.+++++++.+++.| --+.|+.++.-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdAL------------------rvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDAL------------------RVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHH------------------HHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 488999999999887 457888999999999999999999999999999987653
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.05 E-value=19 Score=37.28 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhCCCCCChh--hHHHHHHHHhccCc--HHHHHHHHHHHHHhCCCCChhHHHHH
Q 046257 262 MEAFETFNNMGLAGAELTRS--TFVSVIKLCATTKE--LRLARQLHSQVLKNGIDFDHNIRTGL 321 (838)
Q Consensus 262 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~L 321 (838)
+.+...|+.+...|+..+.. ....++..+..... ...+..+++.+.+.|++.....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 44556666666666555433 23333333322222 34566677777777766655554433
No 283
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.63 E-value=74 Score=34.89 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=110.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 046257 146 SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYL 225 (838)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~ 225 (838)
..-+++..+..+-.++-...+..+|..-| .+...|..+++++... ..+.-..+++++++..+ .|++....|...|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 45667777777777777778888887754 4677888888888877 55667778888887763 45555566666666
Q ss_pred cCCChhHHHHHHhcCCCC------Cc---chHHHHHHHHHhCCChHHHHHHHHHhhhC-CCCCChhhHHHHHHHHhccCc
Q 046257 226 KSKMVRDARAVFDGMEDR------DS---ITWNSMVAGYVTNELHMEAFETFNNMGLA-GAELTRSTFVSVIKLCATTKE 295 (838)
Q Consensus 226 ~~g~~~~A~~~f~~m~~~------~~---~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~ 295 (838)
+ ++...+...|.....+ +. ..|.-++..- ..+.+..+.+..++... |..--.+.+--+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 6 7777777777665321 11 2466555421 24556666666666543 344445566666677888888
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHH
Q 046257 296 LRLARQLHSQVLKNGIDFDHNIRTGLM 322 (838)
Q Consensus 296 ~~~a~~~~~~~~~~g~~~~~~~~~~Li 322 (838)
+.++.++...+++.. .-|...-..++
T Consensus 221 ~~eai~Ilk~il~~d-~k~~~ar~~~i 246 (711)
T COG1747 221 WTEAIRILKHILEHD-EKDVWARKEII 246 (711)
T ss_pred HHHHHHHHHHHhhhc-chhhhHHHHHH
Confidence 888888888887765 23333333343
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.59 E-value=64 Score=34.36 Aligned_cols=66 Identities=12% Similarity=0.071 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF---DGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
....+|..++..+.+.|+++.|...+.++...+..+ +...+..-+...-..|+-++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888889999999999999998888744222 223333444555667888888888777664
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.74 E-value=59 Score=33.11 Aligned_cols=134 Identities=10% Similarity=0.099 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCChHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR----DLVSWNSMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~ 569 (838)
++...+...+..+...... +....-.|.+.|...|+.+.|..++..++.. ......+-|..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4444444444444433222 1334445777888999999999999988732 1122222344444444444444444
Q ss_pred HHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcC
Q 046257 570 KEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631 (838)
Q Consensus 570 ~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G 631 (838)
++.-. .|| ...-..+...+...|+.++|.+.+-.+.++..---+...-..+++++.--|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44433 564 444556667788888888888766555533222233444555555555444
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.54 E-value=3.9 Score=37.45 Aligned_cols=64 Identities=14% Similarity=0.314 Sum_probs=51.6
Q ss_pred hHHHHHHHH---HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 619 HYSCMVDLY---SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 619 ~y~~lv~~l---~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
..+.|++.+ .+.++.++++.++..+ --+.|+.++.-..-++++...|+|.+|.++++.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~AL------------------rvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDAL------------------RVLRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHH------------------HHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444443 4677889999998877 4678999999999999999999999999999999
Q ss_pred hhCCC
Q 046257 696 NDRKV 700 (838)
Q Consensus 696 ~~~g~ 700 (838)
.+++.
T Consensus 71 ~~~~~ 75 (160)
T PF09613_consen 71 EERAP 75 (160)
T ss_pred hccCC
Confidence 77653
No 287
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.12 E-value=93 Score=34.93 Aligned_cols=173 Identities=14% Similarity=0.076 Sum_probs=79.1
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHhhcCCC--CCCHhhHHHHHHH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEKD---IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV--KPNEFTFSSVINA 488 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a 488 (838)
..|..-++.-.+.|+.+...-+|+....+- ...|--.+.-....|+.+-|-.++....+--+ .|....+.+.+.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~- 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE- 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-
Confidence 344555566666777777777776665431 12343344333344666666665554443211 222222333222
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH---HHHHhcC--CCCHHHHHHHHHH-----HHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESAS---EVFKRQR--KRDLVSWNSMICG-----YAQ 558 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~---~~f~~~~--~~~~~~~~~li~~-----~~~ 558 (838)
...++...|+.+++.+...- +.-+.+-.--+.+--+.|+.+.+. .++.... ..+....+.+.-- +.-
T Consensus 377 --e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 --ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred --HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 22256666666666655543 222223233344555666666665 3333222 1122222222211 223
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
.++.+.|..++.+|.+. +.++..-|..++.-+
T Consensus 454 ~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 454 REDADLARIILLEANDI-LPDCKVLYLELIRFE 485 (577)
T ss_pred hcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHH
Confidence 45566666666666652 222334444444433
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.10 E-value=1.1e+02 Score=35.69 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=24.4
Q ss_pred HHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCC
Q 046257 355 SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPA 394 (838)
Q Consensus 355 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 394 (838)
..+.-.|++|.|++.+.+ ..+...|.+.+...|..+.-
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL 303 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL 303 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC
Confidence 445667999999999887 44556677777777665543
No 289
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.42 E-value=70 Score=33.05 Aligned_cols=145 Identities=12% Similarity=0.075 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHH----HHHHHHHHcCChHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWN----SMICGYAQHGHTKKAL 566 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~----~li~~~~~~g~~~~A~ 566 (838)
|....+-..+..+++ .++.|...++--=++|.-.|+.+.-...|+++. .+|...|. .+.-++...|-+++|.
T Consensus 117 g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 333444444445544 356777777777888999999999999999887 34554332 2233556789999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 567 EVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 567 ~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
+.-++..+ +.| |.-.-.++....--.|+.+||.++...-..... ... ...|-...-.+...+.++.|++++++
T Consensus 196 k~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99998888 454 445666677777788999999998775432211 111 11233344455667899999999974
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.10 E-value=20 Score=33.22 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=8.6
Q ss_pred HHHcCChHHHHHHHHHhhh
Q 046257 357 HLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 357 ~~~~g~~~~A~~l~~~m~~ 375 (838)
-.+.|++.+|..+|.++..
T Consensus 177 a~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccchHHHHHHHHHHHc
Confidence 3344444444444444443
No 291
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.81 E-value=16 Score=34.67 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.++.+.+.++.|.+--.+. +++.|.+..+...-+.+|....++++|+.-++++.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKa------------------iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKA------------------IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhh------------------HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4455556666665555444 7777777777777788888888888888888877663
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.43 E-value=4.5 Score=41.26 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=26.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHH
Q 046257 555 GYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 555 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..=.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 45555666666666655555 455 5555555555555555544444333
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.13 E-value=20 Score=33.96 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCCCChh--hHHHHHHHHhccCcHHHHHHHHHHHHHhCCC---CC----hhHHH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGAELTRS--TFVSVIKLCATTKELRLARQLHSQVLKNGID---FD----HNIRT 319 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~----~~~~~ 319 (838)
..+..-|.+.|+.++|++.|.++.+....+... .+..+|+.+...+++..+.....++...--. .+ ..+|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334444444444444444444444433333222 3344455555555555555544443322111 11 12233
Q ss_pred HHHHHHHcCCChHHHHHHHHhcc
Q 046257 320 GLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 320 ~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
.|.. ...+++..|-+.|-...
T Consensus 120 gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 120 GLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHhchHHHHHHHHHccC
Confidence 3322 23567777777776655
No 294
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.98 E-value=7.1 Score=39.49 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=64.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR-KR--------DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 584 (838)
...+...+++.-....+++++...+-+++ .| ..++|-.++. .-++++++.++..=.+-|+-||..|+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhH
Confidence 33444445555555667777777766555 22 2233433332 33677899998888889999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
..+++.+.+.+++.+|.++...|+.
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999888777663
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.95 E-value=6 Score=40.02 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=68.2
Q ss_pred hCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC-------CC--cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 046257 107 SGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE-------SN--VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKP 177 (838)
Q Consensus 107 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 177 (838)
.|.+..+.+...++..-.....++++...+-.+.. |+ .++|-.++. .-++++++.++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34444444455555555555677777776665543 22 223333332 336778888888888899999
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 046257 178 NSFTFSTVLGVLADEGIVATAVQVHTMVIKNG 209 (838)
Q Consensus 178 ~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g 209 (838)
|.+|++.+|+.+.+.+++.+|.++--.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877777654
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.40 E-value=89 Score=34.36 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Ch-hHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLEF-DG-ITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~-~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
..+..+..+.|+.++|++.|++|.+.. .+ |. .....|+.++...+.+.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 346666778899999999999998742 23 22 35667888999999999999988765
No 297
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.01 E-value=23 Score=29.43 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=46.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIG 586 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 586 (838)
..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567899999999999998999999988765 36677787888888888876 555555543
No 298
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.97 E-value=3.2 Score=26.45 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD 580 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 580 (838)
+|..+...|.+.|+.++|++.|++..+ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 567777788888888888888888777 4443
No 299
>PRK09687 putative lyase; Provisional
Probab=78.46 E-value=85 Score=32.29 Aligned_cols=220 Identities=12% Similarity=0.044 Sum_probs=127.4
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc----hHHHHHHHHhhcCCCCCCHhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDT----EGAVKIYRQLTSEGVKPNEFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~l 485 (838)
.++..+....+..+...|..+-...+..-....|...-...+.++.+.|+. .+++.++..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344445555666666666544444444444455666566667777777764 4677777766332 4566555556
Q ss_pred HHHhcCChhhHH--HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-Ch
Q 046257 486 INACTAPSAAVE--QGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHG-HT 562 (838)
Q Consensus 486 l~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~ 562 (838)
+.+.+.. +... ........+...-..++..+--..+.++++.|+-+....+..-+..+|...-..-+.++++.+ +.
T Consensus 112 ~~aLG~~-~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 112 INATGHR-CKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHHHhcc-cccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 6555443 2111 111222223333334466666777778888887544444445555666555455555555543 24
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 563 KKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.++...+..+.. .+|...-...+.++.+.|. .++...+-...+. ++ .....+.+++.-|.- +|...+.+
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 567777777774 5677777778888888887 4566555555422 22 234567888888874 67777776
Q ss_pred C
Q 046257 643 M 643 (838)
Q Consensus 643 m 643 (838)
+
T Consensus 260 l 260 (280)
T PRK09687 260 L 260 (280)
T ss_pred H
Confidence 5
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.72 E-value=5.2 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777654
No 301
>PRK09687 putative lyase; Provisional
Probab=77.46 E-value=91 Score=32.08 Aligned_cols=237 Identities=10% Similarity=0.027 Sum_probs=109.7
Q ss_pred CchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCCh----HHHHHHHHHhhhCCCCCChhhHHHHH
Q 046257 212 VVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELH----MEAFETFNNMGLAGAELTRSTFVSVI 287 (838)
Q Consensus 212 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll 287 (838)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+-|.. .+++.++..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444444444444332222222222333444444445555555542 3455555555322 23444333444
Q ss_pred HHHhccCcHH--HHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcC-ChH
Q 046257 288 KLCATTKELR--LARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNG-AID 364 (838)
Q Consensus 288 ~~~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g-~~~ 364 (838)
.++...+.-. ....+...+...-..++..+-...+.++++.|+. +|...+-.+...+|...-...+.++.+.+ ...
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 4443332110 0111222222222234555666666666666653 34444333332444433333333333332 123
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCc
Q 046257 365 LAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDI 444 (838)
Q Consensus 365 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 444 (838)
++...+..+.. .++..+....+.++.+.|+.+-...+.+.+..++
T Consensus 192 ~~~~~L~~~L~----------------------------------D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~- 236 (280)
T PRK09687 192 DIREAFVAMLQ----------------------------------DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT- 236 (280)
T ss_pred HHHHHHHHHhc----------------------------------CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc-
Confidence 34444444332 2333444556666777777443333444444333
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 237 -~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 237 -VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 234567777888875 688888877753 457766666666654
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.09 E-value=3.9 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHH
Q 046257 670 AIYVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456789999999999999998765
No 303
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.86 E-value=28 Score=38.73 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHH
Q 046257 525 YSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
..+.|+++.|.++..+. .+..-|..|..+..+.|+...|.+.|....+ |.+|+-.+...|+-+--..+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34678888887775543 3567788898888888998888888877665 446666666666644333333
Q ss_pred HHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 605 DIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 605 ~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.... +.|. -|. -.-.|...|++++..+++.+-
T Consensus 716 ~~~~-~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAK-KQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHH-hhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 3332 3332 122 123466788888888888766
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.82 E-value=2.7 Score=38.24 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=60.9
Q ss_pred HHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHH
Q 046257 84 VLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRV 163 (838)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 163 (838)
++..+.+.+.+......++.+.+.+...+....+.|+..|++.++.+...+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666777778888888888888777677788899999999999888888888874332 4445666667777777777
Q ss_pred HHHHHHH
Q 046257 164 LELFHRM 170 (838)
Q Consensus 164 ~~l~~~m 170 (838)
.-+|.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7766654
No 305
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.11 E-value=24 Score=38.39 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 562 TKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
..+...+|+....+ +.-|...|...+.-|-+.+.+.+...+|..|...++-.|+...|.+. ..|-..-+++.|..+|.
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHH
Q ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 642 RMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 642 ~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
+- +.++|+++..+...-.+
T Consensus 165 rg------------------LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 165 RG------------------LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HH------------------hhcCCCChHHHHHHHHH
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.00 E-value=1.7e+02 Score=34.41 Aligned_cols=176 Identities=12% Similarity=0.030 Sum_probs=103.5
Q ss_pred HHHHHhHcCCChhHHHHHHhcCCCCCcch---HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCc
Q 046257 219 ALISMYLKSKMVRDARAVFDGMEDRDSIT---WNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKE 295 (838)
Q Consensus 219 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~---~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 295 (838)
.-+++..+...++-|..+-+.-..+.... .-...+-+.+.|++++|...|-+-... +.|. .+++-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 34455555555666665554433221111 112233455778888888887765422 2332 34555556666
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCe-eehHHHHHHHHHcCChHHHHHHHHHhh
Q 046257 296 LRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDV-VSWTAMISGHLQNGAIDLAVNFFCQMT 374 (838)
Q Consensus 296 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 374 (838)
+..--.+++.+.+.|+.. ...-+.|+.+|.|.++.+.-.++.+... .... .-....+..+.+.+-.++|.-+-.+..
T Consensus 413 IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 666667777888888643 3444678899999999888888777655 2222 234555566666666666655544432
Q ss_pred hcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC
Q 046257 375 REGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE 441 (838)
Q Consensus 375 ~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 441 (838)
.. . ..|--.+-..+++++|.+.+..++-
T Consensus 491 ~h------------------------------------e---~vl~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 491 KH------------------------------------E---WVLDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred cC------------------------------------H---HHHHHHHHHhcCHHHHHHHHhcCCH
Confidence 21 0 1233334567889999999988864
No 307
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=75.50 E-value=35 Score=30.27 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 578 EFDGITFIGVITACTHAG---LVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 578 ~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+...+-..+..++.++. ++.+|..+++...+. -.|+ .+..--|.-.++|.|+++++.++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 455556556777777665 577889999988741 1232 222223456789999999999999876
No 308
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.19 E-value=1.1e+02 Score=32.00 Aligned_cols=132 Identities=15% Similarity=0.077 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Ch----hHHHHHHHHHhccCCHHHHHHHHHHH---HhcCCccCCCchHH
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLEF-DG----ITFIGVITACTHAGLVDEGQQYFDIM---VNEHHIYPTMEHYS 621 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~----~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~y~ 621 (838)
-+|..++...+.++++++.|+....---.. |. ..+.+|-+.+....++++|.-+.... ...+++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 346666777778889999988876622111 11 46778888888888888887665443 22344432222343
Q ss_pred H-----HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 046257 622 C-----MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 622 ~-----lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
+ |.-+|-..|++.+|.+.-++.. --+|..+ -.|-.+-....++++|...|+.+.|.+-|+
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~-------klal~~G-----dra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAM-------KLALQHG-----DRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHH-------HHHHHhC-----ChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 3 3456677888888887776541 1111111 011122234578899999998877655443
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.68 E-value=31 Score=38.40 Aligned_cols=123 Identities=13% Similarity=0.070 Sum_probs=67.0
Q ss_pred CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHH
Q 046257 227 SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQV 306 (838)
Q Consensus 227 ~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 306 (838)
.|+++.|..++-.++++ .-+.++.-+-+.|..++|+++ .+|..-- .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 46677777666666532 334455556666766766654 2332211 11223456666666655432
Q ss_pred HHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc
Q 046257 307 LKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE 376 (838)
Q Consensus 307 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 376 (838)
.+..-|..|-++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+.
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 345556666677777777777776666544 2455555555556655444444443333
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.51 E-value=5.4 Score=26.74 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 670 AIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4578899999999999999999998764
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.30 E-value=5.3 Score=25.07 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++..++.+|...|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998763
No 312
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.72 E-value=1.2e+02 Score=30.17 Aligned_cols=116 Identities=19% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 317 IRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 317 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
.++--..+|..+|..+.|-..+++... ...+-++++|+++|++-..--..-+....
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak-------------~lenv~Pd~AlqlYqralavve~~dr~~m----------- 148 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAK-------------ALENVKPDDALQLYQRALAVVEEDDRDQM----------- 148 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHH-------------HhhcCCHHHHHHHHHHHHHHHhccchHHH-----------
Confidence 445556778888887777666665431 23455677777777765431000000000
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC-------Cc--chHHHHHHHHHhcCCchHHHHHH
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK-------DI--VAWSAMLAGYAQIGDTEGAVKIY 467 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-------~~--~~~~~li~~~~~~g~~~~A~~l~ 467 (838)
-...+...-..|.+..++++|-..|..-... +. ..|-+.|-.|....++..|...+
T Consensus 149 ---------------a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 149 ---------------AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred ---------------HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 0111223444556666666666655443210 11 13445555666666777777777
Q ss_pred HHhh
Q 046257 468 RQLT 471 (838)
Q Consensus 468 ~~m~ 471 (838)
++-.
T Consensus 214 r~~~ 217 (308)
T KOG1585|consen 214 RDCS 217 (308)
T ss_pred cchh
Confidence 6643
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.70 E-value=24 Score=29.14 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHH
Q 046257 262 MEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVL 307 (838)
Q Consensus 262 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 307 (838)
-++.+-++.+....+.|++....+.++||.+.+|+..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455566666667789999999999999999999999999998776
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.46 E-value=6.4 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=19.4
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHcCCChhHHH
Q 046257 203 TMVIKNGGEVVTSVCNALISMYLKSKMVRDAR 234 (838)
Q Consensus 203 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 234 (838)
...++.. +.+...|+.|...|...|+.++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 456667777777777777777664
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.56 E-value=1.1e+02 Score=31.04 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
+.....|...|.+.+|+++-++.+. +.| +...+-.++..+...|+--++.+.++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344566677777777777777766 444 3344555666666677655555555444
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.76 E-value=2.4e+02 Score=32.97 Aligned_cols=160 Identities=14% Similarity=0.017 Sum_probs=70.9
Q ss_pred cHHHHHHHHH-ccCChHHHHHHHHHHHHcCCCCCc----cc-HHHHHHHhccCCChhhHHHHHHHHHHh----CCCCChh
Q 046257 45 EYNRLLFEYC-RDSLHQEALNLFLGIRRLGLPLFG----ST-LSSVLKTCGCLFDHVFGRQVHCECVKS----GFARDVN 114 (838)
Q Consensus 45 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~----~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~ 114 (838)
+.-.+...+. ...+.++|...+++.....-.++- +. -..+++.+.+.+.. .|+...+..++. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~-~a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK-AALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhccCchhHHH
Confidence 3444444444 455677777777655433212111 11 12233333333333 366666554432 1112222
Q ss_pred HHHHH-HHHHHhCCChHHHHHHHccCCC-------CCcchHHHHHHHH--HhCCCchHHHHHHHHHHHCCC---------
Q 046257 115 VSTSL-VDLYMRTNNVEDGRRVFDDMNE-------SNVVSWTSLLSGY--ARNKMNDRVLELFHRMQVEGI--------- 175 (838)
Q Consensus 115 ~~~~l-i~~y~~~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~--------- 175 (838)
.+.-+ +..+...++...|.+.++.+.. +-+...-.++.+. .+.+.++++++...++.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 2233333677777777665432 1122222333332 234555666666665532211
Q ss_pred CCChhhHHHHHHHHh--cCCChHHHHHHHHHH
Q 046257 176 KPNSFTFSTVLGVLA--DEGIVATAVQVHTMV 205 (838)
Q Consensus 176 ~p~~~t~~~ll~~~~--~~g~~~~a~~l~~~~ 205 (838)
.|-..+|..+++.++ ..|+++.+++.+..+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223445555555554 345555555544443
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.71 E-value=61 Score=37.20 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=90.9
Q ss_pred HHhcCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 525 YSKKGNIESASEVFKRQRK--------RDLVSWNSMICGYAQHG-----HTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
++...+.+.|...|+.+.+ -+....+.+...|.+.. +.+.|+.+|.+.-+.| .|+...+...+.-.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 4455677777777765532 13345566666776643 5677999999988887 66776665555444
Q ss_pred hc-cCCHHHHHHHHHHHHhcCCccCCCchH-HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCc
Q 046257 592 TH-AGLVDEGQQYFDIMVNEHHIYPTMEHY-SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDS 669 (838)
Q Consensus 592 ~~-~g~~~~a~~~~~~m~~~~~~~p~~~~y-~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~ 669 (838)
.. ..+...|.++|.... ..|..+-.... .|.-...+-.-+.+.|..++.+.- +.+ ++
T Consensus 338 g~~~~d~~~A~~yy~~Aa-~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA------------------~~g--~~ 396 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAA-KAGHILAIYRLALCYELGLGVERNLELAFAYYKKAA------------------EKG--NP 396 (552)
T ss_pred CCccccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH------------------Hcc--Ch
Confidence 43 346789999999887 44542221111 111111123336778888877652 111 23
Q ss_pred hhHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCC
Q 046257 670 AIYVLLSNMYAAT-GHWQERARVRKLMNDRKVKKEA 704 (838)
Q Consensus 670 ~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~ 704 (838)
.+...++..|.-. |+++.+.-.+..+++.|.+-.-
T Consensus 397 ~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q 432 (552)
T KOG1550|consen 397 SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ 432 (552)
T ss_pred hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh
Confidence 3333444333333 7777777777777776665433
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.28 E-value=12 Score=41.25 Aligned_cols=126 Identities=12% Similarity=0.111 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHhccCCHHHHHHHHH
Q 046257 531 IESASEVFKRQRKRDLVSWNSMIC---GYAQHGHTKKALEVFKEMRRQDLEFD--GITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 531 ~~~A~~~f~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
-+-|-.+|..|..++...|-+|=. -+...|+...|...+..... .+|- .+....|.+...+.|.+..|-.++.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 345667788888887777755422 23467999999999988877 5564 4678888888999999999999988
Q ss_pred HHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 046257 606 IMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM 678 (838)
Q Consensus 606 ~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~ 678 (838)
+...-. ...+-++-.+..+|.-..+++.|++-|+.. +.++|+++..-..|-.+
T Consensus 667 q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a------------------~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 667 QALAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQA------------------LKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHH------------------HhcCCCChhhHHHHHHH
Confidence 776332 334455667888888899999999999876 67777777766655444
No 319
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.13 E-value=8.8 Score=22.90 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 046257 620 YSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
...+...+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456677788888888887765
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.06 E-value=1.1e+02 Score=30.12 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=15.0
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCC
Q 046257 288 KLCATTKELRLARQLHSQVLKNGID 312 (838)
Q Consensus 288 ~~~~~~~~~~~a~~~~~~~~~~g~~ 312 (838)
...+..+++..|..+|+++....+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556667777777776665443
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.85 E-value=96 Score=28.16 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=60.2
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhccCCCCch
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRAGMLEKAMDIINRMPFAA-SATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~-~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
..++.+++..+++.|. -+.|+. +.-.+-+.++.+.|+++||..++++..-.+ ....-.+|+.-|--..-||
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp---- 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA---- 94 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh----
Confidence 3677788888887776 345543 233334566778888888888888875333 3344446666664333333
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+-..++-....|.-.++..+.+.+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 34444555556677777887777776
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.67 E-value=2e+02 Score=31.77 Aligned_cols=164 Identities=9% Similarity=0.172 Sum_probs=94.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 046257 512 NNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVIT 589 (838)
Q Consensus 512 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 589 (838)
..|....-++++.++..-...-.+.+-.+|. ..+-..|-.++..|..+ ..++-..+|+++.+ ..-|.+.+.-.+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHH
Confidence 3455555667777777766666666666665 45667788888888888 56778888888888 4555555555555
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCCC------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhc
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPTM------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLIS 663 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~ 663 (838)
-+...++...+..+|..+.. .+-|.. +.|.-++..-+ .+.|.-..+..+.... ++
T Consensus 140 ~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~---------------lg 200 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTK---------------LG 200 (711)
T ss_pred HHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHh---------------hc
Confidence 44445777778888877652 223321 12333322211 1233333333322100 00
Q ss_pred cCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 664 LQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 664 l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
. -.-...+.-+-.-|....+|++|.++.+.+.+.
T Consensus 201 ~-~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 201 E-GRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred c-chHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 0 001223334445688999999999999976553
No 323
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=67.54 E-value=2.5e+02 Score=32.78 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCC--chH-----HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTM--EHY-----SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~--~~y-----~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|++.|..+..........-.|+. ..| ..+.+.|...|+.++|.+...+.
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 688877666554432111112332 234 23456688899999999887754
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.45 E-value=15 Score=36.90 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+-....|..+|.+.+|.++.++. +.++|-+...+-.|.++|+..|+--+|.+-++.|.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~------------------ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRA------------------LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHH------------------hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44457788999999999999987 789999999999999999999999999988888864
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.45 E-value=10 Score=24.03 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 670 AIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999988654
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.29 E-value=39 Score=32.13 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=55.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCh------hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHH
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQDLEFDG------ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVD 625 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~ 625 (838)
..-+..+|++++|.+-|.+.++ .-|.. +.|..-..|..+.+.++.|..-....+ .+.|+-. ...--..
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHH
Confidence 3446678888888888888888 34432 345555556677888888877766655 2334321 1111235
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 046257 626 LYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m 643 (838)
+|.+...+++|++-+.++
T Consensus 177 ayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHhhhhHHHHHHHHHHH
Confidence 677778888888888876
No 327
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.72 E-value=1.1e+02 Score=28.16 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=34.0
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHHhcCCHHHHHHHHhhCCC-CCCHHHHHHHHHHHH
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYSRAGMLEKAMDIINRMPF-AASATVWRTVLAACR 660 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~G~~~~A~~~~~~m~~-~~~~~~w~~ll~~c~ 660 (838)
...++.+++..++..+. -+.|... +-..-+.++.+.|++++|..+++++.- .|....-.+|++-|-
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34556666666666654 2345432 223334556666666666666666532 123333445555553
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.47 E-value=36 Score=24.71 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGY 747 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 747 (838)
...++-.+.+.|++++|.+..+.+-+ ..|...+.....+.+..+|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45677789999999999999998875 245666665556666777777763
No 329
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.02 E-value=38 Score=28.03 Aligned_cols=60 Identities=10% Similarity=0.110 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 563 KKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
-++.+-++.+...++-|+.....+.|.||.+..++.-|.++|+..+.+.|. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 345555666666778888888888888888888888888888877644332 344565554
No 330
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=64.40 E-value=25 Score=32.92 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccC----C-------HHHHHHHHHHHHhcCCccCCCchHHHHHHHHH
Q 046257 562 TKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAG----L-------VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYS 628 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g----~-------~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~ 628 (838)
+++|++-|++.+. +.|+. .++-.+..|+...+ + +++|..+|+... ..+|+.+.|..-+++..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv---~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAV---DEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH---hcCCCcHHHHHHHHHHH
Confidence 3455555666666 77874 56666776665443 2 344555555544 24688777776555543
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=64.27 E-value=43 Score=28.05 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 564 KALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
+..+-++.+...++-|++....+.|.||.+..++.-|.++|+..+.+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4445556666677889999999999999999999999999998875544 33447776654
No 332
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.16 E-value=1.6e+02 Score=29.44 Aligned_cols=206 Identities=17% Similarity=0.259 Sum_probs=119.0
Q ss_pred HcCCHHHHHHHHHhcCC----C---CcchHHHHHHHHHhcCCchHHHHHHHHhhcC---CC--CCCHhhHHHHHHHhcCC
Q 046257 425 KKGILDEAAKVFELIDE----K---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE---GV--KPNEFTFSSVINACTAP 492 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~~~t~~~ll~a~~~~ 492 (838)
+...+++|..-|+.+.+ + .......||..+.+.|++++.++.|.+|... .+ .-+..+.+++++-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578889988887653 2 2334566899999999999999999998642 12 23345667777665555
Q ss_pred hhhHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CC-------HHHHHHH
Q 046257 493 SAAVEQGKQFHACSIKA-----KLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--------RD-------LVSWNSM 552 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------~~-------~~~~~~l 552 (838)
...+.-..+++-.++. +-..=-.+.+-|...|...|.+..-.+++.++.. .| ...|..=
T Consensus 119 -~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 -KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred -hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 6666666665543321 0000011223455667777777777777665530 11 2356666
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHh-----ccCCHHHHHHHHHHHHhcCCccCCCch-----HHH
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACT-----HAGLVDEGQQYFDIMVNEHHIYPTMEH-----YSC 622 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~~-----y~~ 622 (838)
|..|....+-.+-..+|++.+.-.-...+-....+|.-|. +.|.+++|-.=|-...+.|.-..++.- |-.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 7777777777777777877765221112233456666663 456777765544444334443333322 444
Q ss_pred HHHHHHhcC
Q 046257 623 MVDLYSRAG 631 (838)
Q Consensus 623 lv~~l~r~G 631 (838)
|..++.+.|
T Consensus 278 LANMLmkS~ 286 (440)
T KOG1464|consen 278 LANMLMKSG 286 (440)
T ss_pred HHHHHHHcC
Confidence 456666555
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.08 E-value=83 Score=26.30 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
.++|..+-+.+...+- ....+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 4455555555444331 1223333334556678999999999999988999999887653 567777777777777666
Q ss_pred CCCCChhhHH
Q 046257 275 GAELTRSTFV 284 (838)
Q Consensus 275 g~~p~~~t~~ 284 (838)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.03 E-value=9.8 Score=23.77 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=14.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 046257 552 MICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
+..+|.+.|+.++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44555666666666666666665
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.14 E-value=49 Score=27.71 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 046257 263 EAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLM 322 (838)
Q Consensus 263 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 322 (838)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- ......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence 455556666667788999999999999999999999999998876542 22222555443
No 336
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.68 E-value=1.7e+02 Score=29.10 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=23.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC--CCC-ChhHHHHHHHHHhccCCHHHHHHHH
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQD--LEF-DGITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g--~~p-d~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
.|-.|....++..|...|+.--+-+ ..| |..+...||.+| ..|+.++...+.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444445555555555533311 111 234555555554 345555555444
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.38 E-value=1.4e+02 Score=28.55 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 522 VTMYSKKGNIESASEVFKRQRKRDLVS--WNSMICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
.......|.+|+|.+.++....++-.+ -..-.+.+...|+-++|..-|++.++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334566788888888888877665333 2333457888888999999998888865
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.75 E-value=51 Score=31.59 Aligned_cols=74 Identities=12% Similarity=0.021 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCc--cCCCchHHHHHHHHHhcCCHHHHH
Q 046257 563 KKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHI--YPTMEHYSCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~y~~lv~~l~r~G~~~~A~ 637 (838)
++|.+.|-++...+.--+...-..|..-| ...+.+++.+++....+.+.- .+|++.+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34555555555544332322222233222 244555555555544433221 355666777777777777766664
No 339
>PRK10941 hypothetical protein; Provisional
Probab=60.49 E-value=42 Score=34.20 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+.+-.+|.+.++++.|....+.+ +.+.|+++.-+--.+-+|.+.|.+..|..-++...++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~l------------------l~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEAL------------------LQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44557889999999999999987 8899999988888999999999999999988877653
No 340
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=60.29 E-value=65 Score=29.17 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCChhhHHHH
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMN---------ESNVVSWTSLLSGYARNKM-NDRVLELFHRMQVEGIKPNSFTFSTV 185 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 185 (838)
.|.++.-.+..+++.....+++.+. ..+..+|+.++.+.++... --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444432 1355578888888766555 34567788888877778888888888
Q ss_pred HHHHhcC
Q 046257 186 LGVLADE 192 (838)
Q Consensus 186 l~~~~~~ 192 (838)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8877653
No 341
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=60.03 E-value=1.5e+02 Score=31.14 Aligned_cols=190 Identities=12% Similarity=0.096 Sum_probs=83.0
Q ss_pred hHHHHHHHHcCCHHHHHHHHHh-------cCCC--CcchHHHHHHHHHhcCCchHHHHHHHHhhc-CCCCCCH---hhHH
Q 046257 417 TALLNAYVKKGILDEAAKVFEL-------IDEK--DIVAWSAMLAGYAQIGDTEGAVKIYRQLTS-EGVKPNE---FTFS 483 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~-------~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~ 483 (838)
..+.++.++.|.++++...--. ..+. -..+|-.+..++-+.-++.+++.+-..-.. .|..|.. ....
T Consensus 47 G~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l 126 (518)
T KOG1941|consen 47 GCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSL 126 (518)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhh
Confidence 3455666666766666543211 1111 123455555555555555555554333221 2333311 1111
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhcC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHh-------cCCCCHH----
Q 046257 484 SVINACTAPSAAVEQGKQFHACSIKAKL-----NNALCVSSALVTMYSKKGNIESASEVFKR-------QRKRDLV---- 547 (838)
Q Consensus 484 ~ll~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~li~~y~k~g~~~~A~~~f~~-------~~~~~~~---- 547 (838)
++-.|.... +.++.+.+.++.+.+... .....++.+|-+.|....++++|.-...+ ..-.|..
T Consensus 127 ~~~~Ahlgl-s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 127 SMGNAHLGL-SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hHHHHhhhH-HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 222333333 455555555554443211 12345566666666666666665433222 2222221
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHH
Q 046257 548 --SWNSMICGYAQHGHTKKALEVFKEMRR----QDLEFD-GITFIGVITACTHAGLVDEGQQYFDIM 607 (838)
Q Consensus 548 --~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m 607 (838)
+.-.|.-++...|...+|.+.-++..+ .|-+|- ......+.+.|...|+.+.|+.-+++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122234455555655555555555433 232221 122333444455555555555555544
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.71 E-value=44 Score=32.03 Aligned_cols=71 Identities=17% Similarity=0.072 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh---CCCCChhHHHHHHHHHHhCCChHHH
Q 046257 61 EALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS---GFARDVNVSTSLVDLYMRTNNVEDG 132 (838)
Q Consensus 61 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 132 (838)
+|++.|-++...+.--++.....+...|. ..+...+++++-.++.. +-.+|+.++.+|.+.|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555554443333333333333333 44555555555555442 2234555566666666666655554
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.10 E-value=1.8e+02 Score=29.60 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 046257 314 DHNIRTGLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 314 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
|+.....+...|.+.|++.+|+.-|-.-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 66777888888888888888887775543
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.68 E-value=18 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
.|..+...|...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666666777777777777766655
No 345
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.64 E-value=2.2e+02 Score=29.15 Aligned_cols=53 Identities=9% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHhccc----CCCeeehHHHHHHHHHcCChH
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE----MKDVVSWTAMISGHLQNGAID 364 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~~li~~~~~~g~~~ 364 (838)
.++..+....+..+++.+++..-.++++.... ..|...|..+|......|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 33444444444455555555554444444321 235555666666666666644
No 346
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.75 E-value=89 Score=26.48 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=33.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITF 584 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 584 (838)
..+.+.|++++|...=.....||+..|-+|-. .+.|-.+++...+.++..+| .|....|
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S-SHHHHHH
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34567788888844444445677777766654 46677777777777666654 3333334
No 347
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=57.49 E-value=2.2e+02 Score=28.87 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=46.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACT 592 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 592 (838)
-|+.....+...|.+.|++.+|+.-|-....++...+..++.-....|...++ |...-.+++. |.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HH
Confidence 36778888899999999999999887655444444443333333333333322 1122223333 34
Q ss_pred ccCCHHHHHHHHHHHHhc
Q 046257 593 HAGLVDEGQQYFDIMVNE 610 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~ 610 (838)
..|++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 467788888877766543
No 348
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.48 E-value=1.7e+02 Score=32.15 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=33.6
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHhHcCCCh
Q 046257 155 ARNKMNDRVLELFHRMQVEGIKPNSFT--FSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTS--VCNALISMYLKSKMV 230 (838)
Q Consensus 155 ~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~--~~~~li~~y~~~g~~ 230 (838)
++.|+.+- ++.+.+.|..|+... ..+.+..++..|+.+- .+.+++.|..++.. ...+-+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44555433 344445676665432 2334444445565543 33444455433321 111223334445555
Q ss_pred hHHHHHHh
Q 046257 231 RDARAVFD 238 (838)
Q Consensus 231 ~~A~~~f~ 238 (838)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 55555444
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.11 E-value=2.9e+02 Score=30.15 Aligned_cols=132 Identities=14% Similarity=-0.047 Sum_probs=62.9
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccc--HHHHHHHhccCCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChH
Q 046257 55 RDSLHQEALNLFLGIRRLGLPLFGST--LSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVN--VSTSLVDLYMRTNNVE 130 (838)
Q Consensus 55 ~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~ 130 (838)
+.|+.+- .+.+.+.|..|+... ..+.|..++..|+.+..+ .+++.|..++.. .....+...++.|+.+
T Consensus 11 ~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 11 LFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 4555543 344445566554422 234455555667765444 345666554432 1123344556778888
Q ss_pred HHHHHHccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhH--HHHHHHHhcCCChHHHH
Q 046257 131 DGRRVFDDMNES----NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTF--STVLGVLADEGIVATAV 199 (838)
Q Consensus 131 ~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~ 199 (838)
.+..+++.-... +...++. +...+..|+. ++.+.+.+.|..|+.... .+.+...+..|+.+..+
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~tp-L~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGMTP-LHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHcCCcccccccCCCCCH-HHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 887777654321 1112222 2333344544 344455556665543221 12333334455554333
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.80 E-value=1.1e+02 Score=29.20 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=42.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCCcch--HHHHHHHHHhcCCchHHHHHHHHhhcCC
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDEKDIVA--WSAMLAGYAQIGDTEGAVKIYRQLTSEG 474 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 474 (838)
-|.......|.+|+|.+.++...+++-.+ -..-.+.+...|+-++|..-|.+....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 35566778889999999998887765433 2233467888999999999999888764
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.51 E-value=1.7e+02 Score=27.33 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=79.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc-hHHHH--HHHHHhcC
Q 046257 556 YAQHGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME-HYSCM--VDLYSRAG 631 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~l--v~~l~r~G 631 (838)
+++.|..++|+.-|.++.+-|...=++ .-.-........|+..+|...|+.+-.+..+ |.+. -..-| .-+|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 466788899999999988876543322 1222334456788999999999988754332 2221 11112 24567788
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+++.....+-+.. +-+|--..+-..|+-.-.+.|++.+|.++|..+-.
T Consensus 147 sy~dV~srvepLa~-----------------d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAG-----------------DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccC-----------------CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888777775531 12232334445566667789999999999988753
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=55.72 E-value=29 Score=33.44 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
...+..+.+.+++.+|+...+.- ++-+|.|...-..|..+|+-.|+|++|..-.+..-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~q------------------VkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQ------------------VKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHH------------------HhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 34456788899999999887754 455788999999999999999999999887776544
No 353
>PF13934 ELYS: Nuclear pore complex assembly
Probab=55.71 E-value=94 Score=30.78 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchH---HHH
Q 046257 549 WNSMICGY--AQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHY---SCM 623 (838)
Q Consensus 549 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y---~~l 623 (838)
|...+.|| ..++++++|++++-.- .+.|+.. .-++.++...|+.+.|..+++.+. |..... ..+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~------p~l~s~~~~~~~ 147 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG------PPLSSPEALTLY 147 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC------CCCCCHHHHHHH
Confidence 44445544 3456666666666211 1222211 135555555677777777776542 322222 222
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
..+ ...|.+.||..+.++.+-.-....|..++..|
T Consensus 148 ~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~ 182 (226)
T PF13934_consen 148 FVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHC 182 (226)
T ss_pred HHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence 333 44577777777777664221233555555544
No 354
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.53 E-value=1.2e+02 Score=30.03 Aligned_cols=115 Identities=14% Similarity=0.157 Sum_probs=66.6
Q ss_pred hcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHH
Q 046257 527 KKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 527 k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
..+++++|.+.+-.-. .++-.. -++.++...|+.+.|+.+++.+.-..-.+ .....++.+ ...|.+.||+.+-+
T Consensus 90 D~~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 90 DHGDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred ChHhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 3477888887774432 222222 37778888899999999988754322222 222223333 45689999998876
Q ss_pred HHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 046257 606 IMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 606 ~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~ 650 (838)
..... -....+..++..+.....-....+.+-.+|+.+..-
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 55421 113456677766664442334445555677766544
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=52.60 E-value=84 Score=32.53 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=70.0
Q ss_pred HHHHhcCCHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR--KR-DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDE 599 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 599 (838)
+-|.|+|.+++|...+.... .| |.+++..-..+|.+...+..|..-....+..+ +--.-.|+.-..|=...|+..|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 35899999999999998765 44 88999999999999888887776666655422 0001123333333334556666
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|.+=++... .++|+. .-|-..|.+-..+.|+.-+...-
T Consensus 184 AKkD~E~vL---~LEP~~---~ELkK~~a~i~Sl~E~~I~~KsT 221 (536)
T KOG4648|consen 184 AKKDCETVL---ALEPKN---IELKKSLARINSLRERKIATKST 221 (536)
T ss_pred HHHhHHHHH---hhCccc---HHHHHHHHHhcchHhhhHHhhcC
Confidence 666555544 456663 22334555555566655554433
No 356
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.27 E-value=2.2e+02 Score=30.57 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CCCCCh
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRK------RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ---------DLEFDG 581 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~pd~ 581 (838)
...-+.+-|..||+++.|.+.+.+.++ .-+..|-.+|..-.-.|++......-.+.... -+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 345577889999999999999998652 12344555555555566666655555554432 123333
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNE 610 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 610 (838)
..+.++...+. +.++.|.++|-.....
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~~~~ 258 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLAEFD 258 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhCCCC
Confidence 44555554443 3778888877665433
No 357
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=52.17 E-value=4.4e+02 Score=30.72 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC-------chHHHHHHHHhhcCCCCCCHh--hHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGD-------TEGAVKIYRQLTSEGVKPNEF--TFSSV 485 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~--t~~~l 485 (838)
++|--+.+||.+++|.++...... +....+-..+..|+...+ -++...-|++........|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 577778899999999999954432 344567777888877532 235566677776654433553 34445
Q ss_pred HHHhcCCh-------hhHHHHHHHHHHHHHhc
Q 046257 486 INACTAPS-------AAVEQGKQFHACSIKAK 510 (838)
Q Consensus 486 l~a~~~~~-------~~~~~~~~~~~~~~~~~ 510 (838)
|..|--.. ...|.-.+++-.+++..
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~ 227 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVRED 227 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---T
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccC
Confidence 56654321 22444455554444433
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=51.46 E-value=1.3e+02 Score=32.60 Aligned_cols=140 Identities=18% Similarity=0.198 Sum_probs=83.7
Q ss_pred cCChHHHH-HHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHH
Q 046257 559 HGHTKKAL-EVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 559 ~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~ 637 (838)
.|+...|- ++|.-+....-.|+.+-..+.| .++.|.++.+.+.+....+ -+.....+..|++.-+.+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45555544 3444455544456666555544 5678888888888876642 23445567788888888889999998
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEE
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYS 717 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~ 717 (838)
..-+.| +.-+-+++++...-+-.-...|-++++.-.++..-.-. ++...-|+..-..+.-
T Consensus 378 s~a~~~------------------l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 378 STAEMM------------------LSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQY 437 (831)
T ss_pred HHHHHH------------------hccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--Chhcccceeeecccee
Confidence 887766 22222233333333333345566777777777765433 3334446665555555
Q ss_pred EeeCC
Q 046257 718 FLAGD 722 (838)
Q Consensus 718 f~~~~ 722 (838)
|-.|+
T Consensus 438 ~~~~~ 442 (831)
T PRK15180 438 FNDGN 442 (831)
T ss_pred ccCcc
Confidence 55443
No 359
>PRK11619 lytic murein transglycosylase; Provisional
Probab=49.67 E-value=4.9e+02 Score=30.52 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=69.2
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHH
Q 046257 559 HGHTKKALEVFKEMRRQD-LEFDG--ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g-~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~ 635 (838)
..+.+.|..++.+..... +.+.. .....+.......+..+++...++..... ..+.....--+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345688888888774432 33332 22333333333332256677776654311 1233444444555558888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 636 AMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 636 A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
+...|..||-.. -+.+.-++=++..+...|+-++|...++...
T Consensus 331 ~~~~i~~L~~~~------------------~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEA------------------KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhh------------------ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888885211 1244455667777777899999988888774
No 360
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.46 E-value=1.4e+02 Score=25.52 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
-|..++.-|..+|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888776
No 361
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=48.27 E-value=1.4e+02 Score=31.58 Aligned_cols=160 Identities=11% Similarity=0.205 Sum_probs=79.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCC-ChhHHHHHHHHHhccC
Q 046257 522 VTMYSKKGNIESASEVFKRQRK--RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQD---LEF-DGITFIGVITACTHAG 595 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p-d~~t~~~ll~a~~~~g 595 (838)
.++.-+.|+++.-.+....... ++...+.++... ..|+.+++....+++...- +.+ ....|........+.-
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4556677888887676666653 344455555443 7788888888777766531 000 0111111111111111
Q ss_pred CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHh-hCC-CCCCHHHHHHHHHHHH-Hhc---cCCCCc
Q 046257 596 LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIIN-RMP-FAASATVWRTVLAACR-LIS---LQPHDS 669 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~-~m~-~~~~~~~w~~ll~~c~-~~~---l~P~~~ 669 (838)
.+.|-.++.+... +...+ ..+...-.+.++ ++| ..++..+|..++.-=+ +++ +.....
T Consensus 83 ~L~Elee~~~~~~---~~~~~-------------~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~ 146 (352)
T PF02259_consen 83 QLVELEEIIELKS---NLSQN-------------PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELA 146 (352)
T ss_pred HHHHHHHHHHHHH---hhccc-------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHH
Confidence 2222222211110 00000 111111111111 222 2566667777775533 233 234466
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 670 AIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
..+..++.+..+.|+++-|...+..+...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 677888888888888888888777776543
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.97 E-value=4.8e+02 Score=29.95 Aligned_cols=175 Identities=10% Similarity=0.021 Sum_probs=87.1
Q ss_pred hHHHHHHHccCCCC-CcchHHHHH----HH-HHhCCCchHHHHHHHHHHH-------CCCCCChhhHHHHHHHHhcCC--
Q 046257 129 VEDGRRVFDDMNES-NVVSWTSLL----SG-YARNKMNDRVLELFHRMQV-------EGIKPNSFTFSTVLGVLADEG-- 193 (838)
Q Consensus 129 ~~~A~~~f~~m~~~-~~~~~~~li----~~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~g-- 193 (838)
...|.+.++..... +...-..+. .+ +....+.+.|+.+|+.+.+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666655442 332222222 22 4556788888888888866 44 3334445555555432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc-CCChhHHHHHHhcCCCCC-cchHHHHHHHHHh-----CCChHH
Q 046257 194 ---IVATAVQVHTMVIKNGGEVVTSVCNALISMYLK-SKMVRDARAVFDGMEDRD-SITWNSMVAGYVT-----NELHME 263 (838)
Q Consensus 194 ---~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~m~~~~-~~~~n~li~~~~~-----~g~~~~ 263 (838)
+...|..++....+.| .|+....-..+..... ..+...|.+.|....+.. ..+.-- +..+.. ..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~-la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYR-LALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHH-HHHHHHhCCCcCCCHHH
Confidence 5566888888888777 4444433333333322 235667777776554422 111111 111112 235566
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 046257 264 AFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNG 310 (838)
Q Consensus 264 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 310 (838)
|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+...|
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 777777666665 3322222222333333 44555544444444444
No 363
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.84 E-value=88 Score=32.16 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHHHHH--HHHHHHHHcCChHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR--DLVSWN--SMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~A~~l~ 569 (838)
..+.++..++...++.+- ..|.+..+...--...+.+.++ |+.+|- -+..+-.+.|+..+|.+.|
T Consensus 230 ~Ti~~AE~l~k~ALka~e-----------~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGE-----------TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hhHHHHHHHHHHHHHHHH-----------HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456667777777666441 1122222222222223333333 444442 3444556789999999999
Q ss_pred HHHHHcCCCCCh---hHHHHHHHHHhccCCHHHHHHHHH
Q 046257 570 KEMRRQDLEFDG---ITFIGVITACTHAGLVDEGQQYFD 605 (838)
Q Consensus 570 ~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~ 605 (838)
+.+.+. .|=. .....|+.+|....-+.+...++-
T Consensus 299 RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 299 RDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988763 3322 123457777776655555555443
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.66 E-value=3.7e+02 Score=29.47 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=22.6
Q ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCChhhH
Q 046257 147 WTSLLSGYAR---NKMNDRVLELFHRMQVEGIKPNSFTF 182 (838)
Q Consensus 147 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~ 182 (838)
+..+++++.+ .++++.|+..+..|.+.|..|....-
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~r 268 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIAR 268 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4444554444 46777788888888877766654433
No 365
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.59 E-value=6.1e+02 Score=30.40 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+|+.++...|++++|...++++
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 5677777888888888887766
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.30 E-value=55 Score=25.97 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=22.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
..+.++|+..|+..++.-..|.. .++..++.|++..|++.+.+++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666665553222221 3445555555555555555444
No 367
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.11 E-value=24 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=26.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 556 YAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
....|.-.+|..+|++|++.|-.||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999985 66676654
No 368
>PF15161 Neuropep_like: Neuropeptide-like
Probab=44.89 E-value=12 Score=26.79 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=13.7
Q ss_pred ecccccCcchhhHHHhhhhh
Q 046257 793 KNLRVCGDCHTVIKLISKLE 812 (838)
Q Consensus 793 ~n~~~c~~ch~~~k~~s~~~ 812 (838)
.--|-|.|||.+. |+.+..
T Consensus 11 aesRPCVDCHAFe-fmqRAL 29 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRAL 29 (65)
T ss_pred CCCCCchhhHHHH-HHHHHH
Confidence 4568899999876 666543
No 369
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.80 E-value=47 Score=23.01 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=17.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777777543
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=43.65 E-value=4.8e+02 Score=28.64 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHH---CCC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHH
Q 046257 161 DRVLELFHRMQV---EGI-KPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAV 236 (838)
Q Consensus 161 ~~A~~l~~~m~~---~g~-~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 236 (838)
++...++..... .|+ ..+......++..+ .|+...+..+++.+...+-..+ .+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 445555555432 233 44445555555443 5778777777776654321111 1122222
Q ss_pred HhcC---CCCCcchHHHHHHHHHh---CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHH
Q 046257 237 FDGM---EDRDSITWNSMVAGYVT---NELHMEAFETFNNMGLAGAELTRSTFVSVIKLC 290 (838)
Q Consensus 237 f~~m---~~~~~~~~n~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 290 (838)
+... ..++...+..+++++.+ ..+.+.|+..+.+|.+.|..|....-..+..++
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2211 11222334445555554 478899999999999888877755544444443
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.45 E-value=28 Score=30.76 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=19.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcccHHHHHHHh
Q 046257 56 DSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTC 88 (838)
Q Consensus 56 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 88 (838)
.|.-.+|-.+|.+|++.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 4555567777777777776666 456666554
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.34 E-value=5.2e+02 Score=31.27 Aligned_cols=38 Identities=8% Similarity=0.218 Sum_probs=23.3
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 046257 153 GYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLA 190 (838)
Q Consensus 153 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 190 (838)
.|......+-+...++.+....-.++..-.+.++..|+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 34555666777777777766554555555666665554
No 373
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=42.93 E-value=71 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=24.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVI 588 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 588 (838)
+.-|+.+.|++++|.+..+.+++ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 45577888888888888888888 788765444443
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.50 E-value=41 Score=23.33 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=12.6
Q ss_pred HHHHHHhcCCchHHHHHHHHhhc
Q 046257 450 MLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 450 li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.45 E-value=35 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++.+|+|...-..++..|...|++++|.+.+-.+..+
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999999999988887654
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.09 E-value=74 Score=27.20 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhc
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3689999999999999999999999876
No 377
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.86 E-value=1.9e+02 Score=27.61 Aligned_cols=86 Identities=16% Similarity=0.266 Sum_probs=51.9
Q ss_pred HHhcCCHHHHHHHHHhcC------CCCHHHHHHHHH-HHHHcCC--hHHHHHHHHHHHHcCCCCCh----hHHHHHHHHH
Q 046257 525 YSKKGNIESASEVFKRQR------KRDLVSWNSMIC-GYAQHGH--TKKALEVFKEMRRQDLEFDG----ITFIGVITAC 591 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~------~~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~ 591 (838)
....|++++|.+-++++. ++-...|..+.. +|+.++. +-+|.-+|.-....+ .|.. +++...|.+.
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~-~ps~~EL~V~~~~YilGl 117 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGR-LPSPEELGVPPIAYILGL 117 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCCHHHcCCCHHHHHHHH
Confidence 445688888888887765 224456777666 7787774 557777777666543 3332 2222222222
Q ss_pred --------------hccCCHHHHHHHHHHHHhcC
Q 046257 592 --------------THAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 592 --------------~~~g~~~~a~~~~~~m~~~~ 611 (838)
...|++++|.++++-|.+-|
T Consensus 118 ~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY 151 (204)
T COG2178 118 ADAVGELRRHVLELLRKGSFEEAERFLKFMEKLY 151 (204)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 24567777777777776433
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=38.28 E-value=55 Score=25.97 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=37.5
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHH
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
+....++|+..|....++..-.|+ ..+..+++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778999999988865443343 246889999999999999998874
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.04 E-value=48 Score=24.97 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=9.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 046257 552 MICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~ 573 (838)
.|.||.+.|++++|.+..+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444444444443
No 380
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.95 E-value=14 Score=38.06 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=57.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
..|.+++|.+.|...++ +.|. ...|.--...+.+.++...|+.-.... ++++|+...-
T Consensus 126 n~G~~~~ai~~~t~ai~---lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A------------------~ein~Dsa~~ 184 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE---LNPPLAILYAKRASVFLKLKKPNAAIRDCDFA------------------IEINPDSAKG 184 (377)
T ss_pred cCcchhhhhcccccccc---cCCchhhhcccccceeeeccCCchhhhhhhhh------------------hccCcccccc
Confidence 35667777777766652 2232 233433344555555555555554443 6788888888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccC
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKE 703 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~ 703 (838)
|-.-.......|+|++|.+.+....+.+....
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhccccHH
Confidence 88888788888888888888888877666543
No 381
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.66 E-value=7.9e+02 Score=29.46 Aligned_cols=130 Identities=13% Similarity=0.184 Sum_probs=68.0
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAA 495 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~ 495 (838)
.+........|+.++...+-.-|.. |..++.-+++.+.+++|++++..-. .|.. .-|...+-- .
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q~e~yeeaLevL~~~~----~~el~yk~ap~Li~-----~- 572 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYWIQQENYEEALEVLLNQR----NPELFYKYAPELIT-----H- 572 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcc----chhhHHHhhhHHHh-----c-
Confidence 4455556667777777666555433 6677888899999999998875542 2221 112111110 1
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHH----HhcCCCCHHHHHHHHHHHHHcCChH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKG---NIESASEVF----KRQRKRDLVSWNSMICGYAQHGHTK 563 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~f----~~~~~~~~~~~~~li~~~~~~g~~~ 563 (838)
..++......+.+-..+......++.++.+.+ .-..+.... ......|...+|.++.-|+.+.+-+
T Consensus 573 --~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 573 --SPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred --CcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 11122222222222333344445555555543 222233322 2333567788888888888766543
No 382
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.38 E-value=57 Score=33.39 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVI 588 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 588 (838)
.-||..|..-.+.||+++|+.+++|.++.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 347899999999999999999999999999776566665444
No 383
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.36 E-value=4.8e+02 Score=26.82 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHhHcCCChhHHHHHHhcCC-----CCCcchHHHHHHHHHhCCChHHHHHHH
Q 046257 211 EVVTSVCNALISMYLKSKMVRDARAVFDGME-----DRDSITWNSMVAGYVTNELHMEAFETF 268 (838)
Q Consensus 211 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~n~li~~~~~~g~~~~A~~l~ 268 (838)
.++..+...+|..+++.+++..-.++++... ..|...|..+|......|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 4555555666666666666666666665432 236666777777777777665444333
No 384
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=37.17 E-value=25 Score=20.56 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=14.6
Q ss_pred cchHHHHhhcCCCCCCCCC
Q 046257 2 TLSPALKSLINPQTKQPPK 20 (838)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (838)
+|+||-+.+--||++-||.
T Consensus 8 spapsdils~~pqs~rppg 26 (29)
T PF05570_consen 8 SPAPSDILSSKPQSKRPPG 26 (29)
T ss_pred CCCcHHHHhcCccccCCCC
Confidence 5788888888999865553
No 385
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=36.79 E-value=6.8e+02 Score=28.45 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQRKRD---LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
...|...++.-.+-|+.+.+.-+|++..-|- ...|--.+.-....|+.+-|-.++....+--++-...+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 4455555555566666666666666654331 1234334433333466665555555444422222222222222234
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHHhcCCHHHHH---HHHhhC-CCCCCHHHHHHH-------HHHH
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYSRAGMLEKAM---DIINRM-PFAASATVWRTV-------LAAC 659 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~G~~~~A~---~~~~~m-~~~~~~~~w~~l-------l~~c 659 (838)
-..|+.+.|..+++...+++ |+.. .-.--+.+..|.|+++.+. +++... +..-+..+...+ .--|
T Consensus 377 e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 45666666666666665443 4332 2222245555666666665 333322 111111111111 1111
Q ss_pred H------------HhccCCCCchhHHHHHHHHHhcCC
Q 046257 660 R------------LISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 660 ~------------~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
+ ..+..|++...|..+.++....+-
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 1 356667777777777777666653
No 386
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=35.82 E-value=1.3e+02 Score=32.49 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHHH
Q 046257 645 FAASATVWRTVLAACR 660 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~ 660 (838)
..||+.+|.++..+|.
T Consensus 233 TaPnVlIwsAv~aS~a 248 (391)
T cd07229 233 TAPNVLIWSAALASNA 248 (391)
T ss_pred CCCCchHHHHHHHHcC
Confidence 4799999999999986
No 387
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.76 E-value=4.3e+02 Score=27.69 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=69.4
Q ss_pred CHHHHHHHHHhcC---CCCHHHHHHHHHHHHH------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHhccCCHHH
Q 046257 530 NIESASEVFKRQR---KRDLVSWNSMICGYAQ------HGHTKKALEVFKEMRRQDLEFDGI-TFIGVITACTHAGLVDE 599 (838)
Q Consensus 530 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~------~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~ 599 (838)
-++++..++++.. .|......+.|.++-. .-++.....+|+-+.. +.|+.+ |.|-. -+.+..--.+.
T Consensus 271 lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHH-HHHHHhhhHHh
Confidence 3555566655443 5666666666665432 2356677778888877 678764 45433 33444444677
Q ss_pred HHHHHHHHHhcCCccCCCchH-HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 600 GQQYFDIMVNEHHIYPTMEHY-SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y-~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|+...+.+..+..+. ...+| ..-.+++.|.|+.+||..-|++.
T Consensus 348 gLa~ve~L~~~~~L~-gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 348 GLAMVEALLARPRLD-GYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred HHHHHHHhhcccccc-cccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 788777765332222 22233 44579999999999999999976
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=35.35 E-value=3.5e+02 Score=24.62 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 546 LVSWNSMICGYAQHGH-TKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
-.+|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..++.+|.+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 3455555555544333 22345555555555555555555555555543
No 389
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=34.71 E-value=5.8e+02 Score=27.38 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhcc---CCHHHH
Q 046257 524 MYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHA---GLVDEG 600 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~---g~~~~a 600 (838)
.....++.+.-..++ +.-+-.+.++-.+-..+.+.|+.+.|.++.++.+- +|...+....+. ......
T Consensus 19 ~~v~~~Dp~~l~~ll-~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf--------~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 19 AAVQSHDPNALINLL-QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF--------AFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHccCHHHHHHHH-HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHHHHHHhhhhhcccccCc
Q ss_pred HHHHHHHHhcCCccCCCchHHHH---HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC-CchhHHHHH
Q 046257 601 QQYFDIMVNEHHIYPTMEHYSCM---VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH-DSAIYVLLS 676 (838)
Q Consensus 601 ~~~~~~m~~~~~~~p~~~~y~~l---v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~-~~~~y~~l~ 676 (838)
.++ .+...-|...|.++ +..+++.|-+..|.++.+-+ +.++|. ||-.-....
T Consensus 90 ~rL------~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlL------------------lsLdp~~DP~g~ll~I 145 (360)
T PF04910_consen 90 CRL------DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLL------------------LSLDPDEDPLGVLLFI 145 (360)
T ss_pred ccc------CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHH------------------HhcCCCCCcchhHHHH
Q ss_pred HHHHhcCC
Q 046257 677 NMYAATGH 684 (838)
Q Consensus 677 ~~y~~~g~ 684 (838)
+.|+-..+
T Consensus 146 D~~ALrs~ 153 (360)
T PF04910_consen 146 DYYALRSR 153 (360)
T ss_pred HHHHHhcC
No 390
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.65 E-value=5.5e+02 Score=26.74 Aligned_cols=185 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHhHcCCC--hhHHHHHHhcC--CCCCcchHHHHHHHHHhCC-----ChHHHHHHHHH---------hhhCCCCCC--h
Q 046257 221 ISMYLKSKM--VRDARAVFDGM--EDRDSITWNSMVAGYVTNE-----LHMEAFETFNN---------MGLAGAELT--R 280 (838)
Q Consensus 221 i~~y~~~g~--~~~A~~~f~~m--~~~~~~~~n~li~~~~~~g-----~~~~A~~l~~~---------m~~~g~~p~--~ 280 (838)
+..+++.|. +..+.+++..+ .+.+...|..++..+..-. ..+.....|+. +.+-|..++ .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred hhHHHHHHHH-hccCc-----HHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeeh
Q 046257 281 STFVSVIKLC-ATTKE-----LRLARQLHSQVLKNGI----DFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSW 350 (838)
Q Consensus 281 ~t~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~g~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 350 (838)
......++.. ..... ...+.+.+......+. ..+......+.....+.|+.+.-..+++.....++....
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhcC-CCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCH
Q 046257 351 TAMISGHLQNGAIDLAVNFFCQMTREG-VRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGIL 429 (838)
Q Consensus 351 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~ 429 (838)
+.++.+++...+.+...+++......+ +++....+ ++......+..
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~---------------------------------~~~~~~~~~~~ 251 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRY---------------------------------VLAGLASSNPV 251 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHH---------------------------------HHHHHH-CSTT
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHH---------------------------------HHHHHhcCChh
Q ss_pred --HHHHHHHHh
Q 046257 430 --DEAAKVFEL 438 (838)
Q Consensus 430 --~~A~~~f~~ 438 (838)
+.+.+.|..
T Consensus 252 ~~~~~~~~~~~ 262 (324)
T PF11838_consen 252 GRDLAWEFFKE 262 (324)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.59 E-value=1.9e+02 Score=29.30 Aligned_cols=84 Identities=7% Similarity=-0.091 Sum_probs=42.6
Q ss_pred HHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC----CCcchHHHHHHHHHh---
Q 046257 84 VLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE----SNVVSWTSLLSGYAR--- 156 (838)
Q Consensus 84 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~--- 156 (838)
-|++.+..++..++....-+-....-...+.+.---|-.|.|.|....+.++-....+ .+...|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3556666666655444322211111112233444445567777777666665544322 334446665555443
Q ss_pred --CCCchHHHHHH
Q 046257 157 --NKMNDRVLELF 167 (838)
Q Consensus 157 --~g~~~~A~~l~ 167 (838)
.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777765
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.57 E-value=70 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 563 KKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
++..++++.++. .+=|-.-...+|.++...|++++|.++.+.+.+
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444444433 222444455677777777777777777776653
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=34.19 E-value=1.3e+02 Score=32.67 Aligned_cols=66 Identities=9% Similarity=0.188 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
-.|+++.+-.|++..|++.++.+.+.... .+... -|-...+|..++-.|...+|+.||.+++...-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~-l~~~V---------~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKG-LYTKV---------PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccch-hhccC---------cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999999987554433 22211 22377888899999999999999999998764
No 394
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.04 E-value=2.2e+02 Score=23.23 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHH
Q 046257 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEA 264 (838)
Q Consensus 198 a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A 264 (838)
+.++++..++.|+ .+......+-.+--..|+.+.|+++++.++ +..-.+..+++++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3445555555552 112222222222224577777777777777 7777777777777777665444
No 395
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.93 E-value=1.1e+02 Score=33.36 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=19.2
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++++|.....|+.-+..+.+.|++.+|...++.-
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555543
No 396
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=4.6e+02 Score=31.27 Aligned_cols=134 Identities=14% Similarity=0.156 Sum_probs=87.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
....||+++.|.+.-.++. |..+|..|+..-...|+.+-|.-.|++... |.-|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 4568999999998877665 456799999999999999999999988765 22232334557888877776
Q ss_pred HHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 604 FDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 604 ~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
.+....+ -|.. +....++ -.|++++=.++++..... +-+|.. -+.+|
T Consensus 721 ~~iae~r----~D~~--~~~qnal-Yl~dv~ervkIl~n~g~~----------------------~laylt----a~~~G 767 (1202)
T KOG0292|consen 721 MKIAEIR----NDAT--GQFQNAL-YLGDVKERVKILENGGQL----------------------PLAYLT----AAAHG 767 (1202)
T ss_pred HHHHHhh----hhhH--HHHHHHH-HhccHHHHHHHHHhcCcc----------------------cHHHHH----HhhcC
Confidence 6555322 2221 1111111 257888888887765321 122221 34678
Q ss_pred CchHHHHHHHHHhhCCCc
Q 046257 684 HWQERARVRKLMNDRKVK 701 (838)
Q Consensus 684 ~~~~a~~~~~~m~~~g~~ 701 (838)
.-++|.++.++...++..
T Consensus 768 ~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 768 LEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred cHHHHHHHHHhhccccCC
Confidence 888999998888775544
No 397
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.61 E-value=92 Score=29.89 Aligned_cols=33 Identities=15% Similarity=0.052 Sum_probs=22.5
Q ss_pred CCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 577 LEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 577 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566766677667777777777777777666653
No 398
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.57 E-value=3e+02 Score=23.45 Aligned_cols=81 Identities=12% Similarity=0.073 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHh
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 271 (838)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3456777777777777653 333444445556778899999966556666789999887754 5778888888888877
Q ss_pred hhCC
Q 046257 272 GLAG 275 (838)
Q Consensus 272 ~~~g 275 (838)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 399
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.03 E-value=1e+03 Score=29.37 Aligned_cols=182 Identities=11% Similarity=-0.030 Sum_probs=94.8
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
|..+..+.++.+...+.- ....+...+..+|...-...+.++.+.+..+.. ..... .++...-.....+...
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHhc---CCCHHHHHHHHHHHHH
Confidence 333444444444433211 122344455556655555556666655443221 12221 3444444444444443
Q ss_pred ChhhHHH-HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 046257 492 PSAAVEQ-GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESAS-EVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVF 569 (838)
Q Consensus 492 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 569 (838)
. +..+. +..... +.--.+|..+-.+.+..+.+.|.-+.+. .+...+..+|...=..-+.++...+. +++...+
T Consensus 769 ~-~~~~~~~~~~L~---~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 L-GAGGAPAGDAVR---ALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred h-ccccchhHHHHH---HHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 3 22111 112222 2222456777778888888888765542 34455556665555556667776664 4577777
Q ss_pred HHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 570 KEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 570 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
..+++ .||...=...+.++...+.-..+...+....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 77765 56666666667777665333456666666653
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.47 E-value=1.3e+02 Score=21.23 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=16.5
Q ss_pred HhCCChHHHHHHHHHhhhCCCCCChhhHHHHH
Q 046257 256 VTNELHMEAFETFNNMGLAGAELTRSTFVSVI 287 (838)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 287 (838)
.+.|...++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555554444444
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=32.24 E-value=3.4e+02 Score=29.68 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
...|+++.|...+.... .....+...++....+.|++++|+.+-..|+...+....+. .......-..|.+|++..
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~-~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL-TVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe-eeecccHHHHhHHHHHHH
Confidence 34455555555443322 22333444555555555566666666555554433322211 111111223455566665
Q ss_pred HHHHHH
Q 046257 603 YFDIMV 608 (838)
Q Consensus 603 ~~~~m~ 608 (838)
+|++..
T Consensus 413 ~wk~~~ 418 (831)
T PRK15180 413 YWKRVL 418 (831)
T ss_pred HHHHHh
Confidence 555543
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.80 E-value=1.4e+02 Score=34.36 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=22.4
Q ss_pred CchhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHH
Q 046257 27 YSKKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGI 69 (838)
Q Consensus 27 ~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 69 (838)
..+-|....+..+......+..++.+.. .|+...++.....+
T Consensus 282 l~~~a~~~~~~~~~~~~~~~e~~~~~i~-~~d~~~vL~~~~~~ 323 (566)
T PF07575_consen 282 LHEYAQSCLEEFPPDSTNPLEQILLAIF-EGDIESVLKEISSL 323 (566)
T ss_dssp HHHHHHHHHHHS---TTSTTHHHHHHHH-TS--GGGHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCHHHHHHHHHHH
Confidence 3445555555555544555666665443 67788887777665
No 403
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.43 E-value=6.8e+02 Score=26.87 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
-..|...+-.+|++++|..++.+.+ +.||.+|- .-++..-++++|+-. ...+++
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~---VETygsm~-------~~ekV~fiLEQmrKO----------------G~~~D~ 187 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQ---VETYGSME-------KSEKVAFILEQMRLC----------------LLRLDY 187 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhhH-------HHHHHHHHHHHHHHH----------------HHhhhH
Confidence 3456777889999999999988764 45555543 234455556666532 222222
Q ss_pred HHHHHHHHHHHhcCCccCCC-----chHHHHHHHHHhcCCHHHHHHHHhhCCCC----CCHHHHHHHHHH-HHHhccCCC
Q 046257 598 DEGQQYFDIMVNEHHIYPTM-----EHYSCMVDLYSRAGMLEKAMDIINRMPFA----ASATVWRTVLAA-CRLISLQPH 667 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~----~~~~~w~~ll~~-c~~~~l~P~ 667 (838)
-.|.-+-+.+..++=-.|+. ..|..|+.+..+.+.+=++-+.++..-.- .|+.-|.-.+.+ +...-+.|.
T Consensus 188 vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~ 267 (439)
T KOG1498|consen 188 VRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPH 267 (439)
T ss_pred HHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCC
Confidence 22222222222222112221 23555555555555555555555544322 233346654444 233455676
Q ss_pred CchhHHHHHHHH
Q 046257 668 DSAIYVLLSNMY 679 (838)
Q Consensus 668 ~~~~y~~l~~~y 679 (838)
+..--.++.+.-
T Consensus 268 dneQsdll~~is 279 (439)
T KOG1498|consen 268 DNEQSDLLARIS 279 (439)
T ss_pred CcHHHHHHHHHh
Confidence 666555555543
No 404
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=31.14 E-value=5.8e+02 Score=26.07 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=25.7
Q ss_pred HHHHHcCChHHHHHHHHHhhhcCCCCCcccHH
Q 046257 355 SGHLQNGAIDLAVNFFCQMTREGVRPNGFTYS 386 (838)
Q Consensus 355 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 386 (838)
.-..+..++++|+..+.++...|+..|..|.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 34456788999999999999999888877764
No 405
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=30.95 E-value=1.1e+02 Score=28.79 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=39.5
Q ss_pred HHHHHHHHhcC--CCCH-HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCH
Q 046257 532 ESASEVFKRQR--KRDL-VSWNSMICGYAQHGH-----------TKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLV 597 (838)
Q Consensus 532 ~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 597 (838)
++|..-|++.. +|+- .++..+..+|..++. +++|.+.|++..+ .+|+..+|..-+..+.
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~----- 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA----- 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH-----
Confidence 34444444433 4433 455555555554432 5667777777777 7899999998887764
Q ss_pred HHHHHHHHHHH
Q 046257 598 DEGQQYFDIMV 608 (838)
Q Consensus 598 ~~a~~~~~~m~ 608 (838)
+|-+++.++.
T Consensus 125 -kap~lh~e~~ 134 (186)
T PF06552_consen 125 -KAPELHMEIH 134 (186)
T ss_dssp -THHHHHHHHH
T ss_pred -hhHHHHHHHH
Confidence 4556666554
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.63 E-value=3.9e+02 Score=27.21 Aligned_cols=85 Identities=11% Similarity=0.011 Sum_probs=38.0
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCC--CCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc--
Q 046257 252 VAGYVTNELHMEAFETFNNMGLAG--AELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK-- 327 (838)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-- 327 (838)
|.+++..+++.+++...-+--+.. ++|.. .-.-|-.|++.+....+.++-..-++..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 566666666666665544332221 22222 222233345555555555554444433222222234444443332
Q ss_pred ---CCChHHHHHHH
Q 046257 328 ---CGKMEDASKIF 338 (838)
Q Consensus 328 ---~g~~~~A~~~f 338 (838)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.51 E-value=5.8e+02 Score=25.74 Aligned_cols=74 Identities=16% Similarity=0.288 Sum_probs=38.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCC---------------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCC-CCCCHh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEK---------------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEG-VKPNEF 480 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ 480 (838)
+.|...|...|.+..-.+++.++... -...|..-|..|....+-..-..+|++...-. .-|.+
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP- 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP- 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-
Confidence 34555566666666666666555320 11345556666766666666666666654321 22333
Q ss_pred hHHHHHHHhcC
Q 046257 481 TFSSVINACTA 491 (838)
Q Consensus 481 t~~~ll~a~~~ 491 (838)
....+++-|..
T Consensus 228 lImGvIRECGG 238 (440)
T KOG1464|consen 228 LIMGVIRECGG 238 (440)
T ss_pred HHHhHHHHcCC
Confidence 33345555543
No 408
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.25 E-value=3.8e+02 Score=23.58 Aligned_cols=43 Identities=9% Similarity=0.167 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHH
Q 046257 564 KALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDI 606 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~ 606 (838)
++.++|+.|...|+--.. .-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777776665553 3355555556666677777666653
No 409
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=29.99 E-value=18 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=16.9
Q ss_pred ceEEEecCCcccccCCccccC
Q 046257 814 RDIVVRDTNRFHHFKEGLCSC 834 (838)
Q Consensus 814 r~~~~rd~~~~h~~~~g~csc 834 (838)
..|=+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 467789999999999998654
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=29.92 E-value=1.3e+02 Score=28.86 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 579 (838)
.|+...|..++..+...|+.++|.+..+++.. .-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 45666666666666666666666666666666 445
No 411
>PHA03100 ankyrin repeat protein; Provisional
Probab=29.46 E-value=8.3e+02 Score=27.20 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCccc--HHHHHHH-----hccCCChhhHHHHHHHHHHhCCCCChhHH--HHHHHHHH--hCCChHH
Q 046257 63 LNLFLGIRRLGLPLFGST--LSSVLKT-----CGCLFDHVFGRQVHCECVKSGFARDVNVS--TSLVDLYM--RTNNVED 131 (838)
Q Consensus 63 ~~~~~~m~~~g~~~~~~~--~~~ll~~-----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~y~--~~g~~~~ 131 (838)
.++.+.+.+.|..++... ..+.+.. +...++.+.++.+ ++.|..++.... ...+...+ +.|+.+-
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~L----l~~ga~i~~~d~~g~tpL~~A~~~~~~~~~i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL----LEYGANVNAPDNNGITPLLYAISKKSNSYSI 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHH----HHCCCCCCCCCCCCCchhhHHHhcccChHHH
Q ss_pred HHHHHccCCCCCcchHH--HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhH--HHHHHHHhcCCChHHHHHHHHHHHH
Q 046257 132 GRRVFDDMNESNVVSWT--SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTF--STVLGVLADEGIVATAVQVHTMVIK 207 (838)
Q Consensus 132 A~~~f~~m~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~l~~~~~~ 207 (838)
...+++.-...+..... +.+...++.|. .-.++.+.+.+.|..++...- .+.+...+..| -.++.+.+++
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~ 197 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLD 197 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHH
Q ss_pred hCCCCchhHH--------HHHHHHhHcCCC--hhHHHHHHhc---CCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC
Q 046257 208 NGGEVVTSVC--------NALISMYLKSKM--VRDARAVFDG---MEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA 274 (838)
Q Consensus 208 ~g~~~~~~~~--------~~li~~y~~~g~--~~~A~~~f~~---m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 274 (838)
.|..++.... ...+...+..|. .+-...+++. ...+|...++.+..+..... .++++.+.+.
T Consensus 198 ~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~ 272 (480)
T PHA03100 198 NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLDL 272 (480)
T ss_pred cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHc
Q ss_pred CCCCChhhHH--HHHHHHhccCcHHHHHHHHH
Q 046257 275 GAELTRSTFV--SVIKLCATTKELRLARQLHS 304 (838)
Q Consensus 275 g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~ 304 (838)
|..++...-. +.+..+...++.+.+..+++
T Consensus 273 gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 273 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 412
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.96 E-value=1.5e+02 Score=20.89 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=17.1
Q ss_pred hCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 156 RNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 156 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
+.|-..++..++++|.+.|+.-+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555666655555555555444443
No 413
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.93 E-value=1.6e+02 Score=29.18 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=56.3
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HhccCCCCc
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR-LISLQPHDS 669 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~-~~~l~P~~~ 669 (838)
|.....++.|...+.+.+ .+.|+...|.. .+|+..++ + .-|.-....|| .++++|+..
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~t-----------nralchlk-~------~~~~~v~~dcrralql~~N~v 78 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYT-----------NRALCHLK-L------KHWEPVEEDCRRALQLDPNLV 78 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhh-----------hHHHHHHH-h------hhhhhhhhhHHHHHhcChHHH
Confidence 334455666666655554 56788766532 22333333 1 12222333454 689999999
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 670 AIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.....|+........+++|..++.+..+
T Consensus 79 k~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 79 KAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999888754
No 414
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.59 E-value=3.1e+02 Score=27.84 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHH
Q 046257 251 MVAGYVTNELHMEAFETFNNMGLAGAELTRSTFV 284 (838)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 284 (838)
+..-.++.+++++|+..+.+....|+..|..+.+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~n 42 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLN 42 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhh
Confidence 3445566777888888888888777777665543
No 415
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.26 E-value=2.8e+02 Score=24.45 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=36.6
Q ss_pred HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 046257 264 AFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN 309 (838)
Q Consensus 264 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 309 (838)
..+-++....-.+.|++...-..|++|.+.+|+..|.++++-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344555556678899999999999999999999999999887643
No 416
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.09 E-value=84 Score=31.99 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
..+.|+.|+|..+|+.. +.+.|.++.+..-++.......+.-+|..++-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHA------------------lalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHA------------------LALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHH------------------HhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 45789999999999987 7888989998888888777777777777766543
No 417
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.86 E-value=6.9e+02 Score=28.21 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC--CCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 520 ALVTMYSKKGNIESASEVFKRQR--KRDLVS---WNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 520 ~li~~y~k~g~~~~A~~~f~~~~--~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
.|+.-|.+++++++|..++..|. .-.... .+.+.+.+.+..-..+....++.++..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 46667999999999999999886 112223 333344444443344444455555443
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.77 E-value=3.2e+02 Score=24.07 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 565 ALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 565 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
..+-++.+..-++-|+.......|.||.+..++..|.++|+..+.+.| +....|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 344455666677899999999999999999999999999998864433 3333565554
No 419
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=26.41 E-value=37 Score=18.87 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=8.3
Q ss_pred CcchhhHHHhhh
Q 046257 799 GDCHTVIKLISK 810 (838)
Q Consensus 799 ~~ch~~~k~~s~ 810 (838)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 356888888774
No 420
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.91 E-value=6.8e+02 Score=25.05 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
+..+-..+...|++-++++--.+. +..+|.|..+|+.-+.+.+..=+-++|.+-+.+..+
T Consensus 233 llNy~QC~L~~~e~yevleh~sei------------------L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~-- 292 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEI------------------LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE-- 292 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHH------------------HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--
Confidence 333445666667776666665554 788999999999999888888888888877776654
Q ss_pred CccCCceeEEEECCEEEEEeeCCCCCCChHH-HHHHHHHHHHHHHHc
Q 046257 700 VKKEAGYSWIEVKNKTYSFLAGDISHPQSNQ-IYSKLEELSTRLKDA 745 (838)
Q Consensus 700 ~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~-i~~~l~~l~~~~~~~ 745 (838)
.||.... +..+|.-+..+|.+.
T Consensus 293 ------------------------ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 293 ------------------------LDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred ------------------------cChhhHHHHHHHHHHHHHHHHHh
Confidence 3555444 456677777776653
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=25.44 E-value=2.7e+02 Score=22.72 Aligned_cols=38 Identities=18% Similarity=0.126 Sum_probs=27.2
Q ss_pred HcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 046257 425 KKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGA 463 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 463 (838)
..|+.+.|+++++.++ +..-.|...+.++-..|..+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777888888777 7777777777777777665444
No 422
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.44 E-value=3.1e+02 Score=22.51 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHhcCCch-HHHHHH
Q 046257 616 TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQP--HDSAIYVLLSNMYAATGHWQ-ERARVR 692 (838)
Q Consensus 616 ~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P--~~~~~y~~l~~~y~~~g~~~-~a~~~~ 692 (838)
|...--.+...+...|++++|.+.+-++ +..+| ++...-..|..++...|.-+ -+.+.|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~------------------v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLEL------------------VRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHH------------------HCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4455566788999999999999887765 33333 35777777888888877743 566666
Q ss_pred HHH
Q 046257 693 KLM 695 (838)
Q Consensus 693 ~~m 695 (838)
++|
T Consensus 83 RkL 85 (90)
T PF14561_consen 83 RKL 85 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 423
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.87 E-value=1.1e+02 Score=31.33 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHH
Q 046257 248 WNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVS 285 (838)
Q Consensus 248 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 285 (838)
||..|...++.|++++|+.++++.++.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56777777788888888888888777776544444443
No 424
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.74 E-value=5.9e+02 Score=28.06 Aligned_cols=198 Identities=10% Similarity=0.126 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------------CHHHHHHHHHHH----
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR-------------DLVSWNSMICGY---- 556 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-------------~~~~~~~li~~~---- 556 (838)
+.+++-.+++..+.+.| ...+...-||.|-+.+++++|...+++-.+. .+..-..++.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 44555555666665554 1224455678899999999998888755321 222333344432
Q ss_pred -HHcCChHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHhccCCHHHHHHHHH---HHHh---cCCccCCCchHHHHHHH
Q 046257 557 -AQHGHTKKALEVFKEMRRQDLEFDG---ITFIGVITACTHAGLVDEGQQYFD---IMVN---EHHIYPTMEHYSCMVDL 626 (838)
Q Consensus 557 -~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~---~m~~---~~~~~p~~~~y~~lv~~ 626 (838)
.+||-+ .|..+++-+...|+.-.. ++|+. -|++.=-++++...|+ ++.. +.|+..+.+.+.+|-..
T Consensus 145 QvRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgt 220 (480)
T TIGR01503 145 QIRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGT 220 (480)
T ss_pred eccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCC
Confidence 245533 477788888888876543 45542 2344445566655554 3322 34666677766654322
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCc--cCC
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVK--KEA 704 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~--~~~ 704 (838)
| +.|...+-.++|.+--..+..-++ ++=.|++.|+..+-..-...+++..-+ +.-
T Consensus 221 L-----------------vPPsisiav~ilE~Lla~eqGVks------isvgy~Q~Gn~~QDiaai~aL~~l~~eYl~~~ 277 (480)
T TIGR01503 221 L-----------------VPPSISNAIGIIEGLLAAEQGVKN------ITVGYGQVGNLTQDIAALRALEEQTNEYLKAY 277 (480)
T ss_pred c-----------------cChHHHHHHHHHHHHHHHHcCCeE------EEeccccCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 1 133333333333332111111111 111377777766443333333322111 122
Q ss_pred ceeEEEECCEEEEEeeC
Q 046257 705 GYSWIEVKNKTYSFLAG 721 (838)
Q Consensus 705 ~~s~i~~~~~~~~f~~~ 721 (838)
|+--|++....|.++.|
T Consensus 278 g~~Dv~i~tV~hqwMG~ 294 (480)
T TIGR01503 278 GYNDVFVTTVFHQWMGG 294 (480)
T ss_pred CCCceEEEEEeeeccCC
Confidence 34347777778888754
No 425
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.45 E-value=6.4e+02 Score=24.21 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHcCCHHHHHHHHHhcCC------CCcchHHHHHH-HHHhcCC--chHHHHHHHHhhc
Q 046257 423 YVKKGILDEAAKVFELIDE------KDIVAWSAMLA-GYAQIGD--TEGAVKIYRQLTS 472 (838)
Q Consensus 423 y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~ 472 (838)
....|++++|..-++.+.+ +-...|..+.. +|+..+. +-+|..++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 4567888998888887754 23445666665 6777664 4466666655544
No 426
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=24.09 E-value=9.7e+02 Score=26.23 Aligned_cols=386 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHc
Q 046257 58 LHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFD 137 (838)
Q Consensus 58 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 137 (838)
+..+|..++.-.....+..+.-.-..+-++.-...+-..+.++.....++ -......+-++....--..--.+.++-.
T Consensus 138 dipdavnvlalfiaraivddilpp~fl~r~~k~lp~~skg~qV~~~aeks--ylsap~hae~ve~~wGg~~n~t~EEvK~ 215 (645)
T KOG0403|consen 138 DIPDAVNVLALFIARAIVDDILPPAFLKRAKKLLPDSSKGFQVINTAEKS--YLSAPHHAELVELFWGGETNATVEEVKN 215 (645)
T ss_pred cCchHHHHHHHHHHHHHHHhccChHHHHHHHhhCCCcccchhHHHHHHhh--ccCCCchhhHHHhhhCCCccccHHHHHH
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 046257 138 DMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVC 217 (838)
Q Consensus 138 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 217 (838)
++ |-++.-|...|+..+|.+..+++ ..+.+....+-+++...+.-..+..+.-...+.+...+...-
T Consensus 216 kI--------n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~gliss 282 (645)
T KOG0403|consen 216 KI--------NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISS 282 (645)
T ss_pred HH--------HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhh
Q ss_pred HHHHHHhHcCC--------ChhHHHHHHhcCCCCCc---------------------------chHHHHHHHHHhCCChH
Q 046257 218 NALISMYLKSK--------MVRDARAVFDGMEDRDS---------------------------ITWNSMVAGYVTNELHM 262 (838)
Q Consensus 218 ~~li~~y~~~g--------~~~~A~~~f~~m~~~~~---------------------------~~~n~li~~~~~~g~~~ 262 (838)
+-+..++.|.+ ++..|...|+.+..+++ ..-..+|.-|...|+..
T Consensus 283 Sq~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~ 362 (645)
T KOG0403|consen 283 SQMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTP 362 (645)
T ss_pred hccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChH
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCC------------
Q 046257 263 EAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGK------------ 330 (838)
Q Consensus 263 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~------------ 330 (838)
+..+.++++-.....|-..-+..-+..=.+...-+.|-.++..+--. +-++..+-+..+..+-...+
T Consensus 363 Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~~el 441 (645)
T KOG0403|consen 363 EVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRASQEL 441 (645)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccHHHH
Q ss_pred -hHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhc
Q 046257 331 -MEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNY 409 (838)
Q Consensus 331 -~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 409 (838)
.=-|+.+.+.+..+.+...+..-+..-.+....-.--+.+-.|...|-+ +++.....|.-+....+.+.-
T Consensus 442 alFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeR--------llr~WGgGG~g~sVed~kdkI- 512 (645)
T KOG0403|consen 442 ALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGER--------LLRVWGGGGGGWSVEDAKDKI- 512 (645)
T ss_pred HHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccc--------hhheecCCCCcchHHHHHHHH-
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCC
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDEK---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV 475 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 475 (838)
..|+.-|...|++.+|.....++.-| ..+.+.+++.+.-+.|+-+..+.++++...+|+
T Consensus 513 -------~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 -------DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred -------HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 427
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=23.71 E-value=7.1e+02 Score=24.50 Aligned_cols=58 Identities=7% Similarity=0.012 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.+..|+.+.+.+...+|+.+.++-.+. +|. .-+-..++..++-.|++++|..-++...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 445566777777788888877776663 454 3445556677777888888877666554
No 428
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.60 E-value=8.6e+02 Score=25.46 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHH
Q 046257 427 GILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACS 506 (838)
Q Consensus 427 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 506 (838)
++.+....++..+.+.+...|-..+.. +..++.|..-++++..+=- ..+++-.+..+..
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce------------------~~~i~~D~~~l~~m~~~ne---eki~eld~~ieda 94 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCE------------------SLVIKLDQDLLNSMKKANE---EKIKELDEKIEDA 94 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHh------------------hcceeccHHHHHHHHHhhH---HHHHHHHHHHHHH
Confidence 355566667777777666555443332 2234455555555443210 1122221222222
Q ss_pred HHh-cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------CCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcC
Q 046257 507 IKA-KLNNALCVSSALVTMYSKKGNIESASEVFKRQRK--------RDLVSWNSM-ICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 507 ~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
.+. |-.--....-...+.|++-|+.+.|.+.+.+.-+ -|++-+..- .-.|..+.-..+-++-.+.+.++|
T Consensus 95 eenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G 174 (393)
T KOG0687|consen 95 EENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG 174 (393)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 221 2111223444567789999999999998876542 255544432 334555555677777788888887
Q ss_pred CCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 577 LEFDG----ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 577 ~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
-.=+. .+|-++- |....++.+|..+|-...
T Consensus 175 gDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 175 GDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred CChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 65543 3454443 344567888888887665
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.57 E-value=5.5e+02 Score=27.79 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=33.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 046257 556 YAQHGHTKKALEVFKEMRRQDLEFDGI--TFIGVITACT--HAGLVDEGQQYFDIMV 608 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~ 608 (838)
+..++++..|.++|+++.+. +.++.. .+..+..+|. ..-+.++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34677888888888888876 555544 2333333432 3556777777777665
No 430
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.27 E-value=3.1e+02 Score=26.03 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCccCCCch-------HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEH-------YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~-------y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++.|..+|+.+.++... |...| -...|-.|.+.|.+++|.+++++.
T Consensus 85 LESAl~v~~~I~~E~~~-~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 85 LESALMVLESIEKEFSL-PETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 45666777776655432 21111 122356789999999999999987
No 431
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.10 E-value=4.7e+02 Score=30.18 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=0.0
Q ss_pred HcCChHHHHHHHHHhhhcCCCCCcccHHHHHhh
Q 046257 359 QNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391 (838)
Q Consensus 359 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 391 (838)
+.|+..+|.+.+-.+...+..|..+-...+..+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 357788888888888888888887776555443
No 432
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.01 E-value=3.2e+02 Score=23.23 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=10.6
Q ss_pred HHHHHHhcCCchHHHHHHHHh
Q 046257 450 MLAGYAQIGDTEGAVKIYRQL 470 (838)
Q Consensus 450 li~~~~~~g~~~~A~~l~~~m 470 (838)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555555555555555554
No 433
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.94 E-value=5.3e+02 Score=29.04 Aligned_cols=108 Identities=13% Similarity=0.075 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCC--Ccc---hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDEK--DIV---AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
.|+.-|.+++++++|..++..|.=. ... +.+.+.+.+.+..-.++....++.+...=..|....-...
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~------- 485 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDAT------- 485 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHH-------
Confidence 5788899999999999999998522 122 3344444455554445555555555543222332211111
Q ss_pred hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH
Q 046257 493 SAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDL 546 (838)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~ 546 (838)
..+.+.+++.+..+ +..-+.+.+++++|..+--.+..+|.
T Consensus 486 --~~ey~d~V~~~aRR------------fFhhLLR~~rfekAFlLAvdi~~~DL 525 (545)
T PF11768_consen 486 --VLEYRDPVSDLARR------------FFHHLLRYQRFEKAFLLAVDIGDRDL 525 (545)
T ss_pred --HHHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHhccchHH
Confidence 22222333333332 12223455778888777666665554
No 434
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.05 E-value=7.1e+02 Score=23.89 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=39.4
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 046257 234 RAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNG 310 (838)
Q Consensus 234 ~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 310 (838)
+.+..+.+++-.+.|-....+-++.-+.+++-+.|-- ..=.+++-.|-+..++.+++.+++.+.+..
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445566677666666666555554443321 122355666777778888888888776653
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.95 E-value=4.9e+02 Score=22.88 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 364 DLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 364 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
+.+.++|..|...|+--...-| |..-...+.+.|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~f------------------------------Y~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALF------------------------------YEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHH------------------------------HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHH------------------------------HHHHHHHHHHcCCHHHHHHHHHh
Confidence 3888888888887765554433 24455566777888888887753
No 436
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=21.89 E-value=2.5e+02 Score=22.74 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHH
Q 046257 198 AVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEA 264 (838)
Q Consensus 198 a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A 264 (838)
...++..+++.| +.+....-...+..-+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~----Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRG----VFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcC----CCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
No 437
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=21.71 E-value=8.1e+02 Score=24.41 Aligned_cols=40 Identities=15% Similarity=-0.004 Sum_probs=21.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHh
Q 046257 450 MLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINAC 489 (838)
Q Consensus 450 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 489 (838)
++..+-+.|+++++++.++++...+...+..--+.+-.||
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 4455566677777777777776665555544444443333
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=21.45 E-value=1.4e+03 Score=26.95 Aligned_cols=268 Identities=9% Similarity=0.042 Sum_probs=131.1
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 046257 114 NVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEG 193 (838)
Q Consensus 114 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 193 (838)
..-..-+..+++.+++..... |..-+..+...--....+....|+.++|......+-..|.. .......++..+.
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~--- 174 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQ--- 174 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHH---
Confidence 344445556677788888877 44323345555566677777888887787777776544422 2333444444444
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhh
Q 046257 194 IVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGL 273 (838)
Q Consensus 194 ~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 273 (838)
+.|.-.+..++.- +......|+...|..+...+..........++..+.+ ...+..++..
T Consensus 175 -------------~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~--- 234 (644)
T PRK11619 175 -------------QSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFART--- 234 (644)
T ss_pred -------------HcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhc---
Confidence 3332222222222 3344456677777776666632222222233333322 2222222211
Q ss_pred CCCCCChhh---HHHHHHHHhccCcHHHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHcCCChHHHHHHHHhccc-CCC
Q 046257 274 AGAELTRST---FVSVIKLCATTKELRLARQLHSQVLKNG-IDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMRE-MKD 346 (838)
Q Consensus 274 ~g~~p~~~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~ 346 (838)
+.|+... ....+.-+ ...+.+.|..++....... +.+. ..+...+.......+..++|...++.... ..+
T Consensus 235 --~~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~ 311 (644)
T PRK11619 235 --TGPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQS 311 (644)
T ss_pred --cCCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCC
Confidence 1122211 11111112 2345577777777664433 2221 12233333333333235566666666542 123
Q ss_pred eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc
Q 046257 347 VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK 426 (838)
Q Consensus 347 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~ 426 (838)
...+.--+..-.+.++++.+...+..|....-.-...-| =+..++...
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~Y--------------------------------W~aRa~~~~ 359 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRY--------------------------------WQADLLLEQ 359 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHH--------------------------------HHHHHHHHc
Confidence 333344444445778888887777777543211111111 234445557
Q ss_pred CCHHHHHHHHHhcCC
Q 046257 427 GILDEAAKVFELIDE 441 (838)
Q Consensus 427 g~~~~A~~~f~~~~~ 441 (838)
|+.++|...|..+..
T Consensus 360 g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 360 GRKAEAEEILRQLMQ 374 (644)
T ss_pred CCHHHHHHHHHHHhc
Confidence 888888888887744
No 439
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=21.14 E-value=2.1e+02 Score=30.25 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHH
Q 046257 685 WQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSK 734 (838)
Q Consensus 685 ~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~ 734 (838)
.++...+-++|++.|++-. |++.++..|.|..-+.+.+...++...
T Consensus 282 ~D~~~~Y~~~Lkk~Gv~v~----~~~~e~~~H~~~~~~~~~~~a~~~~~~ 327 (336)
T KOG1515|consen 282 RDEGLAYAEKLKKAGVEVT----LIHYEDGFHGFHILDPSSKEAHALMDA 327 (336)
T ss_pred hhhhHHHHHHHHHcCCeEE----EEEECCCeeEEEecCCchhhHHHHHHH
Confidence 4788889999999999865 999999999999766664444444333
No 440
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=20.91 E-value=33 Score=25.01 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=9.5
Q ss_pred cccccCcchhhHH
Q 046257 794 NLRVCGDCHTVIK 806 (838)
Q Consensus 794 n~~~c~~ch~~~k 806 (838)
-.-+|+|||.--.
T Consensus 19 miYiCgdC~~en~ 31 (62)
T KOG3507|consen 19 MIYICGDCGQENT 31 (62)
T ss_pred EEEEecccccccc
Confidence 3578999997543
No 441
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.84 E-value=6.4e+02 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..+..|.|+.++|.+.|.++
T Consensus 171 igeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 345555666666666666554
No 442
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.81 E-value=1.7e+03 Score=27.88 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=95.0
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------------------C-----------C--HHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQRK-------------------R-----------D--LVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
+|..+|..-+|...|.+... + . +.-|-..+.-+-+++..+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 47788888888888865430 0 1 22355667788888999999988877
Q ss_pred HHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCch----HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 572 MRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEH----YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 572 m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++. +.||. .+++.+.+-....|.+-+|...+-+ .|+.+. .--+|-.+..+|.++. +-++
T Consensus 1009 AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~~----L~~f 1076 (1480)
T KOG4521|consen 1009 AIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCLRQLVIVLFECGELEA----LATF 1076 (1480)
T ss_pred HHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchHH----HhhC
Confidence 7774 44442 3566666666777888777766532 244432 3446777888888754 3336
Q ss_pred CCCCCHHHHHH--HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 644 PFAASATVWRT--VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 644 ~~~~~~~~w~~--ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
|+..-...... .-.+||-.-+ .-...|.+|---|...++|..|.-+
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~--mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPS--MKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCcc--ccccHHHHHHHHHHhhcchhHHHHH
Confidence 65433322232 2233542111 2334577777778888898887654
No 443
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.21 E-value=1e+03 Score=25.12 Aligned_cols=95 Identities=7% Similarity=0.050 Sum_probs=53.7
Q ss_pred HHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHH-HHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHH
Q 046257 220 LISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHME-AFETFNNMGLAGAELTRSTFVSVIKLCATTKELRL 298 (838)
Q Consensus 220 li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 298 (838)
+.+.++|.++.+.+..+-..+..--.....++..++-...-.+. +..+++..... ||..+...++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 45556666665555555554444333334444444444433333 23344444433 888888899999888777777
Q ss_pred HHHHHHHHHHhCCCCChhH
Q 046257 299 ARQLHSQVLKNGIDFDHNI 317 (838)
Q Consensus 299 a~~~~~~~~~~g~~~~~~~ 317 (838)
....+..+++.....+..+
T Consensus 249 ~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 249 VAILIDALLQSPRLCHPEV 267 (340)
T ss_pred HHHHHHHHhcCcccCChHH
Confidence 6666666666543334433
No 444
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=20.15 E-value=5.4e+02 Score=22.71 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHH-HHHHHHHcCChHHHHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNS-MICGYAQHGHTKKALEVFKEM 572 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m 572 (838)
-.....++.-++.-+|..++|.++++... .++-...|. ++..|++..+.++.+++=++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455666677778888888888887776 444455554 778888887777766665543
Done!