Query 046257
Match_columns 838
No_of_seqs 774 out of 5007
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 17:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.3E-39 7.7E-44 376.7 38.0 498 123-681 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.5E-38 2.6E-42 363.9 38.3 487 29-589 70-592 (597)
3 4g26_A Pentatricopeptide repea 99.9 2.2E-26 7.6E-31 256.5 19.3 185 445-630 27-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 4.9E-26 1.7E-30 253.8 19.2 184 145-328 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1E-22 3.4E-27 222.6 38.8 371 253-684 7-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4E-22 1.4E-26 217.9 38.4 352 287-697 6-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.4E-20 4.7E-25 213.8 29.0 433 147-675 9-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.8E-20 9.7E-25 211.1 30.1 418 247-697 8-477 (514)
9 2y4t_A DNAJ homolog subfamily 99.8 1.3E-19 4.4E-24 202.1 27.3 312 314-683 25-389 (450)
10 3fp2_A TPR repeat-containing p 99.8 8.6E-19 2.9E-23 200.2 33.1 420 247-698 27-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.8 1.3E-18 4.4E-23 193.9 30.1 294 345-697 24-357 (450)
12 3fp2_A TPR repeat-containing p 99.8 7.7E-18 2.6E-22 192.3 30.3 413 145-643 26-488 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 2.2E-13 7.5E-18 160.2 61.3 596 48-696 487-1307(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 6.6E-14 2.2E-18 164.6 53.6 507 41-643 837-1381(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 6.8E-16 2.3E-20 165.7 31.5 312 348-744 4-355 (359)
16 3ieg_A DNAJ homolog subfamily 99.7 2.5E-15 8.7E-20 161.2 29.8 324 245-682 3-353 (359)
17 3hym_B Cell division cycle pro 99.7 6.4E-15 2.2E-19 156.1 30.6 285 312-685 19-321 (330)
18 1b89_A Protein (clathrin heavy 99.7 1.4E-14 4.9E-19 153.6 31.5 278 28-370 19-305 (449)
19 1b89_A Protein (clathrin heavy 99.7 2.1E-15 7.3E-20 159.9 24.9 304 124-492 14-328 (449)
20 3mkr_A Coatomer subunit epsilo 99.7 6.9E-15 2.4E-19 152.8 25.3 220 419-697 40-263 (291)
21 3hym_B Cell division cycle pro 99.7 2E-14 6.7E-19 152.3 27.2 264 410-697 19-298 (330)
22 3spa_A Mtrpol, DNA-directed RN 99.7 5E-17 1.7E-21 185.1 7.3 129 510-639 122-258 (1134)
23 2xm6_A Protein corresponding t 99.7 2.9E-13 9.9E-18 152.3 37.0 364 214-681 39-452 (490)
24 1fch_A Peroxisomal targeting s 99.6 1.7E-14 5.7E-19 155.7 21.9 293 324-693 34-354 (368)
25 2ooe_A Cleavage stimulation fa 99.6 6.2E-13 2.1E-17 151.3 36.0 178 498-698 304-492 (530)
26 4g1t_A Interferon-induced prot 99.6 6.3E-14 2.1E-18 157.0 26.5 361 314-709 50-470 (472)
27 1fch_A Peroxisomal targeting s 99.6 5.5E-14 1.9E-18 151.6 24.1 297 289-643 34-356 (368)
28 4eqf_A PEX5-related protein; a 99.6 4.2E-14 1.4E-18 152.5 22.4 258 346-643 64-353 (365)
29 3spa_A Mtrpol, DNA-directed RN 99.6 4.8E-16 1.6E-20 177.2 6.6 151 109-259 123-286 (1134)
30 3mkr_A Coatomer subunit epsilo 99.6 5.6E-14 1.9E-18 145.9 21.1 248 317-640 36-288 (291)
31 2xm6_A Protein corresponding t 99.6 5.9E-12 2E-16 141.6 39.1 332 192-608 56-430 (490)
32 2ooe_A Cleavage stimulation fa 99.6 3.4E-12 1.2E-16 145.1 36.9 302 143-508 12-384 (530)
33 4eqf_A PEX5-related protein; a 99.6 6.8E-14 2.3E-18 150.9 19.5 255 415-694 67-352 (365)
34 3cv0_A Peroxisome targeting si 99.5 1.2E-12 4.2E-17 138.2 25.7 257 346-643 20-312 (327)
35 3cv0_A Peroxisome targeting si 99.5 3.4E-13 1.2E-17 142.5 20.7 255 415-695 23-312 (327)
36 4g1t_A Interferon-induced prot 99.5 9.2E-12 3.1E-16 139.3 29.5 202 426-643 226-456 (472)
37 2pl2_A Hypothetical conserved 99.5 1.6E-12 5.5E-17 128.6 17.9 194 443-696 4-212 (217)
38 3uq3_A Heat shock protein STI1 99.4 4.8E-12 1.6E-16 128.5 20.0 222 415-697 7-235 (258)
39 3u4t_A TPR repeat-containing p 99.4 8.3E-12 2.8E-16 128.1 21.6 246 417-684 7-270 (272)
40 3uq3_A Heat shock protein STI1 99.4 1.7E-11 5.9E-16 124.3 18.3 212 349-643 7-233 (258)
41 2ho1_A Type 4 fimbrial biogene 99.4 5.9E-11 2E-15 120.2 21.8 198 444-698 37-238 (252)
42 3e4b_A ALGK; tetratricopeptide 99.3 8.1E-10 2.8E-14 122.3 30.5 219 416-700 144-389 (452)
43 2vq2_A PILW, putative fimbrial 99.3 1.3E-10 4.5E-15 114.9 20.3 197 443-697 7-210 (225)
44 1xnf_A Lipoprotein NLPI; TPR, 99.3 5E-11 1.7E-15 122.3 17.7 239 425-692 17-269 (275)
45 2q7f_A YRRB protein; TPR, prot 99.3 6.6E-11 2.3E-15 118.8 16.6 211 414-683 24-241 (243)
46 3vtx_A MAMA; tetratricopeptide 99.3 1.6E-10 5.4E-15 110.7 18.5 162 514-698 4-170 (184)
47 3e4b_A ALGK; tetratricopeptide 99.3 6.3E-10 2.1E-14 123.2 25.3 336 90-475 15-389 (452)
48 1ouv_A Conserved hypothetical 99.2 1.2E-09 4E-14 112.2 24.9 221 414-700 7-253 (273)
49 2pl2_A Hypothetical conserved 99.2 1.6E-10 5.4E-15 114.2 16.5 195 42-241 4-212 (217)
50 2q7f_A YRRB protein; TPR, prot 99.2 2.1E-10 7.1E-15 115.2 17.5 198 443-698 22-222 (243)
51 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.2E-10 7.6E-15 117.4 18.0 222 456-698 17-244 (275)
52 2ho1_A Type 4 fimbrial biogene 99.2 2.9E-10 1E-14 114.9 18.4 204 33-274 25-238 (252)
53 3sf4_A G-protein-signaling mod 99.2 1.9E-10 6.3E-15 125.5 17.5 160 516-687 188-365 (406)
54 3u4t_A TPR repeat-containing p 99.2 3.2E-10 1.1E-14 116.1 18.1 231 445-698 4-250 (272)
55 2h6f_A Protein farnesyltransfe 99.2 6.6E-10 2.3E-14 119.2 20.1 242 447-742 100-366 (382)
56 4gyw_A UDP-N-acetylglucosamine 99.2 1.6E-10 5.5E-15 134.0 16.4 161 514-697 8-173 (723)
57 4a1s_A PINS, partner of inscut 99.2 6.7E-11 2.3E-15 129.5 12.2 267 418-697 53-371 (411)
58 1ouv_A Conserved hypothetical 99.2 3E-09 1E-13 109.1 23.9 220 146-377 8-252 (273)
59 2h6f_A Protein farnesyltransfe 99.2 5.6E-10 1.9E-14 119.8 18.9 241 349-681 99-365 (382)
60 4e6h_A MRNA 3'-END-processing 99.2 4E-08 1.4E-12 112.6 35.0 145 97-242 51-222 (679)
61 2vq2_A PILW, putative fimbrial 99.2 2.5E-09 8.5E-14 105.6 21.1 206 144-385 8-218 (225)
62 4abn_A Tetratricopeptide repea 99.1 2.3E-10 7.8E-15 127.5 14.6 207 429-695 84-318 (474)
63 3as5_A MAMA; tetratricopeptide 99.1 2.1E-09 7.3E-14 102.3 19.2 161 516-698 9-173 (186)
64 2ond_A Cleavage stimulation fa 99.1 3.3E-09 1.1E-13 111.0 21.9 242 430-676 33-304 (308)
65 3ro2_A PINS homolog, G-protein 99.1 2.9E-10 9.8E-15 120.0 12.6 268 418-698 10-332 (338)
66 4a1s_A PINS, partner of inscut 99.1 1.4E-09 4.9E-14 118.8 18.6 128 516-643 224-369 (411)
67 3sf4_A G-protein-signaling mod 99.1 3.8E-10 1.3E-14 122.9 12.8 263 416-697 12-335 (406)
68 3ro2_A PINS homolog, G-protein 99.1 1.7E-09 6E-14 113.9 16.2 267 319-643 9-329 (338)
69 4i17_A Hypothetical protein; T 99.1 2.6E-09 9E-14 106.2 16.2 149 514-685 6-169 (228)
70 4e6h_A MRNA 3'-END-processing 99.1 3.8E-07 1.3E-11 104.5 35.8 204 413-643 343-567 (679)
71 3nf1_A KLC 1, kinesin light ch 99.0 2.4E-10 8.1E-15 119.5 8.4 238 413-697 27-306 (311)
72 4abn_A Tetratricopeptide repea 99.0 3.4E-09 1.2E-13 118.0 18.2 178 496-697 84-286 (474)
73 3vtx_A MAMA; tetratricopeptide 99.0 4.3E-09 1.5E-13 100.6 15.8 159 443-643 4-167 (184)
74 3ulq_A Response regulator aspa 99.0 3.4E-09 1.1E-13 114.8 16.7 163 516-697 185-367 (383)
75 2ond_A Cleavage stimulation fa 99.0 2.5E-08 8.5E-13 104.2 20.9 162 146-310 101-271 (308)
76 3q15_A PSP28, response regulat 98.9 2.7E-08 9.2E-13 107.4 19.3 228 419-697 107-364 (378)
77 3nf1_A KLC 1, kinesin light ch 98.9 1.1E-09 3.8E-14 114.3 6.6 167 42-208 26-224 (311)
78 4ga2_A E3 SUMO-protein ligase 98.9 2E-09 6.8E-14 99.1 7.1 141 521-684 3-149 (150)
79 3as5_A MAMA; tetratricopeptide 98.9 2.9E-08 1E-12 94.3 15.6 159 445-643 9-170 (186)
80 3ulq_A Response regulator aspa 98.9 1.4E-07 4.7E-12 102.0 22.1 229 321-609 109-367 (383)
81 4i17_A Hypothetical protein; T 98.9 4E-08 1.4E-12 97.5 16.5 208 442-680 5-225 (228)
82 3edt_B KLC 2, kinesin light ch 98.8 6.3E-09 2.1E-13 106.7 10.0 184 514-697 42-280 (283)
83 3qky_A Outer membrane assembly 98.8 7.4E-08 2.5E-12 97.8 17.9 185 514-744 14-247 (261)
84 1hz4_A MALT regulatory protein 98.8 5.3E-07 1.8E-11 96.9 25.4 233 418-697 58-321 (373)
85 2fo7_A Synthetic consensus TPR 98.8 5.7E-08 2E-12 86.6 14.4 129 548-697 3-131 (136)
86 4gyw_A UDP-N-acetylglucosamine 98.8 4.6E-08 1.6E-12 113.5 14.4 131 545-698 8-140 (723)
87 1qqe_A Vesicular transport pro 98.8 2.6E-07 8.8E-12 95.6 18.5 207 428-696 32-267 (292)
88 2yhc_A BAMD, UPF0169 lipoprote 98.7 3.2E-07 1.1E-11 90.7 17.5 161 518-701 7-216 (225)
89 1hz4_A MALT regulatory protein 98.7 1.5E-06 5.2E-11 93.2 24.3 223 50-272 21-280 (373)
90 4ga2_A E3 SUMO-protein ligase 98.7 1.7E-08 5.7E-13 92.8 6.9 123 552-697 3-128 (150)
91 2fo7_A Synthetic consensus TPR 98.7 3.1E-07 1E-11 81.7 15.0 124 517-643 3-129 (136)
92 2pzi_A Probable serine/threoni 98.7 4.6E-07 1.6E-11 105.6 20.4 148 513-684 431-583 (681)
93 2r5s_A Uncharacterized protein 98.7 1.7E-07 5.7E-12 88.7 13.7 156 518-696 9-171 (176)
94 1qqe_A Vesicular transport pro 98.7 4.4E-07 1.5E-11 93.8 17.8 194 416-643 40-266 (292)
95 3mv2_B Coatomer subunit epsilo 98.7 1.9E-06 6.5E-11 87.6 21.7 235 423-698 23-282 (310)
96 3qou_A Protein YBBN; thioredox 98.7 1.7E-07 5.9E-12 96.6 14.1 161 512-695 114-281 (287)
97 3q15_A PSP28, response regulat 98.7 2E-06 6.8E-11 92.6 22.7 228 321-608 107-363 (378)
98 3qky_A Outer membrane assembly 98.6 4.9E-07 1.7E-11 91.7 14.3 192 442-687 13-250 (261)
99 2vsy_A XCC0866; transferase, g 98.6 4E-07 1.4E-11 104.1 15.2 159 494-676 3-169 (568)
100 3edt_B KLC 2, kinesin light ch 98.6 5.7E-07 1.9E-11 91.8 14.6 196 444-643 43-278 (283)
101 3mv2_B Coatomer subunit epsilo 98.5 8.6E-07 3E-11 90.1 14.4 185 432-673 85-291 (310)
102 2ifu_A Gamma-SNAP; membrane fu 98.5 6E-06 2.1E-10 85.9 21.2 131 446-608 78-222 (307)
103 3u3w_A Transcriptional activat 98.5 3.9E-06 1.3E-10 86.6 19.6 164 521-696 81-264 (293)
104 4gco_A Protein STI-1; structur 98.5 7.8E-07 2.7E-11 78.7 11.9 110 547-679 14-125 (126)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1.3E-06 4.3E-11 85.3 13.7 139 521-699 12-151 (213)
106 2pzi_A Probable serine/threoni 98.5 4.2E-07 1.4E-11 105.9 11.7 148 526-697 402-562 (681)
107 3urz_A Uncharacterized protein 98.5 2.1E-06 7E-11 83.7 14.9 167 449-643 9-183 (208)
108 3rjv_A Putative SEL1 repeat pr 98.5 4.6E-06 1.6E-10 81.4 17.3 160 514-699 17-198 (212)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4.7E-06 1.6E-10 81.2 17.5 129 488-643 15-147 (213)
110 1na0_A Designed protein CTPR3; 98.4 3.1E-06 1.1E-10 73.9 13.6 116 546-683 9-125 (125)
111 2uy1_A Cleavage stimulation fa 98.4 9.7E-05 3.3E-09 81.9 28.6 388 125-574 6-412 (493)
112 2lni_A Stress-induced-phosphop 98.4 2.2E-06 7.5E-11 76.0 12.5 118 544-684 14-133 (133)
113 2vgx_A Chaperone SYCD; alterna 98.4 6.5E-07 2.2E-11 81.8 8.9 100 577-697 16-117 (148)
114 4gco_A Protein STI-1; structur 98.4 1.7E-06 5.8E-11 76.5 11.2 100 577-697 8-109 (126)
115 1p5q_A FKBP52, FK506-binding p 98.4 1.3E-06 4.5E-11 92.2 12.1 129 545-696 146-292 (336)
116 3gyz_A Chaperone protein IPGC; 98.4 2E-06 6.8E-11 78.6 11.4 101 577-698 31-133 (151)
117 3qou_A Protein YBBN; thioredox 98.4 9.5E-06 3.2E-10 83.4 17.7 174 431-643 104-281 (287)
118 1a17_A Serine/threonine protei 98.4 4.5E-06 1.6E-10 77.4 13.9 129 546-696 13-144 (166)
119 2vyi_A SGTA protein; chaperone 98.4 4.7E-06 1.6E-10 73.4 12.9 119 545-686 11-131 (131)
120 2fbn_A 70 kDa peptidylprolyl i 98.3 4.2E-07 1.4E-11 87.8 6.4 153 521-696 10-184 (198)
121 2vsy_A XCC0866; transferase, g 98.3 3.7E-06 1.3E-10 96.0 14.8 148 457-610 2-157 (568)
122 3urz_A Uncharacterized protein 98.3 5.7E-06 2E-10 80.4 14.1 153 522-698 11-186 (208)
123 2r5s_A Uncharacterized protein 98.3 8.9E-06 3E-10 76.6 14.7 156 446-643 8-170 (176)
124 2c2l_A CHIP, carboxy terminus 98.3 3.2E-06 1.1E-10 86.7 12.3 159 518-698 7-199 (281)
125 2qfc_A PLCR protein; TPR, HTH, 98.3 1.4E-05 4.7E-10 82.5 17.2 167 518-696 78-264 (293)
126 3dra_A Protein farnesyltransfe 98.3 9.2E-05 3.2E-09 75.9 22.6 146 529-697 124-286 (306)
127 3gyz_A Chaperone protein IPGC; 98.2 2.1E-06 7E-11 78.5 8.2 118 517-643 11-130 (151)
128 2ifu_A Gamma-SNAP; membrane fu 98.2 6.4E-06 2.2E-10 85.7 12.6 195 457-696 4-222 (307)
129 3gw4_A Uncharacterized protein 98.2 6E-06 2E-10 79.6 11.6 160 526-697 3-175 (203)
130 2xcb_A PCRH, regulatory protei 98.2 8.5E-06 2.9E-10 73.6 11.6 94 583-697 20-114 (142)
131 4f3v_A ESX-1 secretion system 98.2 5.1E-06 1.8E-10 83.3 10.9 198 425-643 18-234 (282)
132 2e2e_A Formate-dependent nitri 98.2 1.1E-05 3.6E-10 76.1 12.6 119 557-698 21-144 (177)
133 2vgx_A Chaperone SYCD; alterna 98.2 5.3E-06 1.8E-10 75.7 9.8 105 545-672 20-126 (148)
134 3upv_A Heat shock protein STI1 98.2 9.2E-06 3.2E-10 71.5 10.7 93 584-697 7-100 (126)
135 2dba_A Smooth muscle cell asso 98.2 1.8E-05 6.3E-10 71.5 12.7 115 544-681 26-145 (148)
136 1wao_1 Serine/threonine protei 98.1 4.8E-06 1.6E-10 92.3 9.9 120 552-694 12-135 (477)
137 1elw_A TPR1-domain of HOP; HOP 98.1 2.5E-05 8.6E-10 67.2 12.6 111 546-679 4-116 (118)
138 3dra_A Protein farnesyltransfe 98.1 0.00052 1.8E-08 70.3 23.8 216 54-273 44-286 (306)
139 2yhc_A BAMD, UPF0169 lipoprote 98.1 6.9E-05 2.3E-09 73.7 16.8 133 545-697 3-175 (225)
140 1a17_A Serine/threonine protei 98.1 2.8E-05 9.6E-10 71.9 13.1 122 517-643 15-143 (166)
141 2e2e_A Formate-dependent nitri 98.1 7E-06 2.4E-10 77.4 8.8 125 526-673 21-153 (177)
142 1wao_1 Serine/threonine protei 98.1 2E-05 6.8E-10 87.3 13.0 113 524-641 15-134 (477)
143 2uy1_A Cleavage stimulation fa 98.0 0.0013 4.5E-08 72.8 27.1 335 29-375 31-412 (493)
144 2xcb_A PCRH, regulatory protei 98.0 2.9E-05 9.7E-10 70.1 11.2 108 546-676 18-127 (142)
145 3sz7_A HSC70 cochaperone (SGT) 98.0 3.1E-05 1E-09 71.9 11.7 109 545-676 10-120 (164)
146 3upv_A Heat shock protein STI1 98.0 2.9E-05 9.9E-10 68.2 10.9 93 546-643 4-98 (126)
147 4gcn_A Protein STI-1; structur 98.0 2.9E-05 1E-09 68.5 10.7 92 547-643 9-109 (127)
148 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00018 6.1E-09 74.0 18.2 167 446-643 77-263 (293)
149 3rjv_A Putative SEL1 repeat pr 98.0 0.00016 5.3E-09 70.4 16.5 172 30-210 4-199 (212)
150 1na0_A Designed protein CTPR3; 98.0 9.8E-05 3.3E-09 64.0 13.6 112 515-630 9-124 (125)
151 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.7E-05 9.3E-10 85.8 12.1 129 545-696 267-413 (457)
152 2kck_A TPR repeat; tetratricop 98.0 4.1E-05 1.4E-09 65.1 10.2 97 582-698 7-106 (112)
153 1elw_A TPR1-domain of HOP; HOP 97.9 9.6E-05 3.3E-09 63.4 12.3 97 581-698 4-101 (118)
154 1hxi_A PEX5, peroxisome target 97.9 2.7E-05 9.3E-10 68.0 8.6 93 584-697 20-113 (121)
155 3q49_B STIP1 homology and U bo 97.9 5.9E-05 2E-09 67.2 10.9 96 581-697 9-105 (137)
156 2dba_A Smooth muscle cell asso 97.9 0.00012 3.9E-09 66.1 12.7 97 580-697 27-127 (148)
157 3ro3_A PINS homolog, G-protein 97.9 4.9E-05 1.7E-09 69.6 10.1 139 547-697 10-157 (164)
158 3u3w_A Transcriptional activat 97.9 0.00051 1.8E-08 70.5 18.7 156 220-375 81-265 (293)
159 3gw4_A Uncharacterized protein 97.9 7.3E-05 2.5E-09 71.8 11.5 130 514-643 25-173 (203)
160 2fbn_A 70 kDa peptidylprolyl i 97.9 2E-05 6.9E-10 75.8 7.4 126 552-697 10-150 (198)
161 2if4_A ATFKBP42; FKBP-like, al 97.9 2.5E-05 8.5E-10 82.3 8.7 128 548-698 181-328 (338)
162 4gcn_A Protein STI-1; structur 97.9 6.2E-05 2.1E-09 66.4 9.8 100 517-621 10-120 (127)
163 2vyi_A SGTA protein; chaperone 97.9 0.00018 6.3E-09 62.9 13.1 114 515-633 12-130 (131)
164 3rkv_A Putative peptidylprolyl 97.9 7.1E-05 2.4E-09 69.1 10.7 130 546-745 11-148 (162)
165 2c2l_A CHIP, carboxy terminus 97.9 0.00036 1.2E-08 71.2 17.0 146 545-697 3-163 (281)
166 3q49_B STIP1 homology and U bo 97.9 7.6E-05 2.6E-09 66.5 10.5 96 543-643 6-103 (137)
167 1elr_A TPR2A-domain of HOP; HO 97.9 8.3E-05 2.8E-09 65.2 10.6 114 547-681 5-124 (131)
168 2lni_A Stress-induced-phosphop 97.8 0.00017 5.8E-09 63.5 12.6 115 513-632 14-133 (133)
169 2xev_A YBGF; tetratricopeptide 97.8 0.00016 5.6E-09 63.4 12.3 88 551-643 7-102 (129)
170 3q7a_A Farnesyltransferase alp 97.8 0.0033 1.1E-07 65.1 23.3 223 46-272 57-329 (349)
171 2kck_A TPR repeat; tetratricop 97.8 0.00018 6.3E-09 60.9 11.7 93 515-609 6-105 (112)
172 1ihg_A Cyclophilin 40; ppiase 97.8 7.6E-05 2.6E-09 79.5 10.7 123 547-690 224-362 (370)
173 1p5q_A FKBP52, FK506-binding p 97.8 0.00014 4.8E-09 76.5 12.5 124 515-643 147-291 (336)
174 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00018 6E-09 66.6 11.8 95 514-610 10-108 (164)
175 1hxi_A PEX5, peroxisome target 97.8 6.7E-05 2.3E-09 65.5 8.3 90 549-643 20-111 (121)
176 2xev_A YBGF; tetratricopeptide 97.7 0.00021 7.1E-09 62.7 11.5 93 584-697 5-104 (129)
177 2hr2_A Hypothetical protein; a 97.7 4.2E-05 1.4E-09 69.2 6.8 108 548-675 13-142 (159)
178 3rkv_A Putative peptidylprolyl 97.7 8.1E-05 2.8E-09 68.8 9.1 111 515-643 11-123 (162)
179 1elr_A TPR2A-domain of HOP; HO 97.7 0.0001 3.4E-09 64.7 8.7 108 516-626 5-121 (131)
180 3q7a_A Farnesyltransferase alp 97.7 0.0045 1.5E-07 64.1 21.7 184 496-697 105-330 (349)
181 4f3v_A ESX-1 secretion system 97.6 0.00015 5.1E-09 72.6 9.8 202 125-342 18-235 (282)
182 3k9i_A BH0479 protein; putativ 97.6 3.9E-05 1.3E-09 66.4 4.5 84 595-696 4-88 (117)
183 2hr2_A Hypothetical protein; a 97.6 0.00013 4.4E-09 66.0 7.8 94 583-697 13-130 (159)
184 3ro3_A PINS homolog, G-protein 97.6 0.00019 6.6E-09 65.5 9.2 128 516-643 10-155 (164)
185 4b4t_Q 26S proteasome regulato 97.6 0.00041 1.4E-08 75.7 13.0 192 420-643 11-242 (434)
186 3k9i_A BH0479 protein; putativ 97.6 5.4E-05 1.9E-09 65.5 4.5 82 559-643 3-87 (117)
187 3dss_A Geranylgeranyl transfer 97.5 0.011 3.8E-07 60.8 22.0 216 456-697 41-303 (331)
188 1dce_A Protein (RAB geranylger 97.4 0.0018 6.1E-08 72.9 16.1 134 531-687 89-244 (567)
189 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0011 3.6E-08 73.0 13.9 122 517-643 270-412 (457)
190 3n71_A Histone lysine methyltr 97.4 0.00019 6.5E-09 78.9 7.7 134 556-702 319-468 (490)
191 1ihg_A Cyclophilin 40; ppiase 97.4 0.00077 2.6E-08 71.7 11.4 97 583-697 225-335 (370)
192 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00034 1.2E-08 73.5 8.4 120 519-643 183-325 (338)
193 2l6j_A TPR repeat-containing p 97.3 0.00045 1.5E-08 58.5 7.1 87 583-690 6-99 (111)
194 4b4t_Q 26S proteasome regulato 97.3 0.0024 8E-08 69.5 14.5 210 452-696 12-243 (434)
195 2l6j_A TPR repeat-containing p 97.3 0.00023 7.9E-09 60.4 4.8 95 545-644 3-105 (111)
196 1na3_A Designed protein CTPR2; 97.2 0.0012 4.1E-08 53.4 8.1 80 583-683 11-91 (91)
197 3ma5_A Tetratricopeptide repea 97.1 0.00079 2.7E-08 56.1 6.6 64 616-697 6-69 (100)
198 3lvg_A Clathrin heavy chain 1; 97.1 0.0002 6.9E-09 75.0 2.7 433 112-603 53-534 (624)
199 3dss_A Geranylgeranyl transfer 97.0 0.018 6.3E-07 59.2 17.1 144 531-697 90-266 (331)
200 2kat_A Uncharacterized protein 97.0 0.0014 4.7E-08 56.2 7.5 78 599-697 3-81 (115)
201 3bee_A Putative YFRE protein; 97.0 0.0014 4.7E-08 53.7 6.7 68 615-700 4-74 (93)
202 1klx_A Cysteine rich protein B 96.9 0.0029 9.8E-08 56.4 8.7 113 559-700 8-128 (138)
203 3n71_A Histone lysine methyltr 96.9 0.0025 8.6E-08 70.0 9.8 127 590-744 318-450 (490)
204 3qwp_A SET and MYND domain-con 96.9 0.0028 9.6E-08 68.5 10.0 125 591-743 297-427 (429)
205 3ma5_A Tetratricopeptide repea 96.8 0.0035 1.2E-07 52.0 7.7 62 545-608 6-68 (100)
206 2kat_A Uncharacterized protein 96.8 0.0018 6.2E-08 55.3 6.0 65 543-609 16-81 (115)
207 3mkq_A Coatomer beta'-subunit; 96.7 0.051 1.7E-06 64.4 20.5 102 524-643 661-762 (814)
208 1zu2_A Mitochondrial import re 96.7 0.00079 2.7E-08 60.6 3.4 48 633-698 62-120 (158)
209 1dce_A Protein (RAB geranylger 96.7 0.025 8.5E-07 63.6 16.4 146 529-697 43-220 (567)
210 3ly7_A Transcriptional activat 96.7 0.027 9.3E-07 58.2 14.7 135 542-698 190-339 (372)
211 1zu2_A Mitochondrial import re 96.6 0.0024 8.1E-08 57.5 5.4 90 526-620 13-127 (158)
212 3qww_A SET and MYND domain-con 96.6 0.0017 5.9E-08 70.0 5.3 115 594-736 311-431 (433)
213 1na3_A Designed protein CTPR2; 96.3 0.02 6.7E-07 45.9 9.2 60 547-608 10-70 (91)
214 2kc7_A BFR218_protein; tetratr 96.3 0.0085 2.9E-07 49.3 6.8 58 623-698 6-64 (99)
215 1klx_A Cysteine rich protein B 96.3 0.072 2.4E-06 47.1 13.3 107 494-608 9-124 (138)
216 3lvg_A Clathrin heavy chain 1; 95.8 0.013 4.3E-07 61.8 6.9 395 43-492 54-525 (624)
217 3qwp_A SET and MYND domain-con 95.7 0.037 1.3E-06 59.7 10.3 91 553-643 294-397 (429)
218 3qww_A SET and MYND domain-con 95.6 0.028 9.6E-07 60.5 8.8 85 559-643 311-408 (433)
219 1pc2_A Mitochondria fission pr 95.5 0.047 1.6E-06 48.5 8.5 92 562-674 14-110 (152)
220 3ly7_A Transcriptional activat 95.4 0.37 1.3E-05 49.7 15.9 74 543-621 274-347 (372)
221 2kc7_A BFR218_protein; tetratr 95.3 0.064 2.2E-06 43.8 8.4 79 552-643 6-87 (99)
222 3mkq_A Coatomer beta'-subunit; 95.2 0.41 1.4E-05 56.4 18.5 100 325-472 609-709 (814)
223 3u64_A Protein TP_0956; tetrat 94.8 0.037 1.3E-06 54.8 6.2 112 527-643 133-266 (301)
224 1pc2_A Mitochondria fission pr 94.6 0.12 4.1E-06 45.9 8.3 106 597-748 14-124 (152)
225 2v5f_A Prolyl 4-hydroxylase su 94.1 0.14 4.7E-06 42.6 7.5 73 585-675 9-86 (104)
226 1nzn_A CGI-135 protein, fissio 94.1 0.24 8.1E-06 42.3 8.7 94 561-675 16-114 (126)
227 3mkq_B Coatomer subunit alpha; 94.0 2 7E-05 39.0 15.3 104 523-644 13-116 (177)
228 1wy6_A Hypothetical protein ST 93.6 2.4 8.2E-05 36.2 13.6 85 594-702 74-158 (172)
229 3bee_A Putative YFRE protein; 93.3 0.89 3E-05 36.6 10.8 63 544-608 4-70 (93)
230 3u64_A Protein TP_0956; tetrat 93.3 0.13 4.5E-06 50.9 6.6 87 597-704 179-275 (301)
231 3mkq_B Coatomer subunit alpha; 93.2 2.9 9.9E-05 38.0 14.9 128 224-374 15-142 (177)
232 1qsa_A Protein (soluble lytic 91.5 21 0.00071 39.9 23.4 250 417-697 76-347 (618)
233 2wpv_A GET4, UPF0363 protein Y 90.1 17 0.00057 36.5 18.3 131 217-359 36-177 (312)
234 4h7y_A Dual specificity protei 90.0 2.3 7.8E-05 37.2 9.9 99 542-643 9-120 (161)
235 3lpz_A GET4 (YOR164C homolog); 89.4 20 0.00067 36.3 20.4 167 116-308 38-215 (336)
236 2v5f_A Prolyl 4-hydroxylase su 89.1 1.5 5E-05 36.1 8.2 62 518-581 8-79 (104)
237 3ffl_A Anaphase-promoting comp 88.3 2.1 7.3E-05 38.2 8.8 112 521-646 26-151 (167)
238 1wy6_A Hypothetical protein ST 86.0 15 0.00053 31.4 12.1 84 226-311 73-156 (172)
239 1nzn_A CGI-135 protein, fissio 85.8 3.6 0.00012 35.0 8.5 105 597-747 17-126 (126)
240 3lpz_A GET4 (YOR164C homolog); 84.5 37 0.0013 34.3 21.2 112 217-339 38-160 (336)
241 4b4t_P 26S proteasome regulato 83.7 48 0.0017 35.3 18.6 313 259-613 30-389 (445)
242 3o48_A Mitochondria fission 1 82.2 6.1 0.00021 33.8 8.3 76 577-673 36-116 (134)
243 2p58_C Putative type III secre 81.2 11 0.00037 30.2 8.7 60 523-585 48-107 (116)
244 4gns_B Protein CSD3, chitin bi 81.0 7.1 0.00024 44.6 11.1 55 624-696 344-398 (754)
245 2wpv_A GET4, UPF0363 protein Y 80.9 48 0.0017 33.2 19.9 162 421-608 41-215 (312)
246 2uwj_G Type III export protein 79.8 10 0.00035 30.2 8.1 60 523-585 47-106 (115)
247 4h7y_A Dual specificity protei 77.0 29 0.00099 30.4 11.0 63 158-221 74-136 (161)
248 3ffl_A Anaphase-promoting comp 76.4 12 0.00041 33.4 8.8 117 575-695 12-148 (167)
249 3txn_A 26S proteasome regulato 76.3 20 0.0007 37.4 12.0 160 519-695 23-207 (394)
250 4ady_A RPN2, 26S proteasome re 75.3 1.3E+02 0.0045 35.1 31.2 250 324-583 383-663 (963)
251 1y8m_A FIS1; mitochondria, unk 75.1 17 0.00059 31.4 9.1 75 578-673 36-115 (144)
252 2ff4_A Probable regulatory pro 74.4 7.6 0.00026 40.8 8.4 67 552-620 177-248 (388)
253 1y8m_A FIS1; mitochondria, unk 74.2 43 0.0015 29.0 11.6 91 614-748 36-130 (144)
254 4b4t_P 26S proteasome regulato 72.8 92 0.0032 33.1 16.6 98 585-696 141-245 (445)
255 1v54_E Cytochrome C oxidase po 72.1 21 0.00074 28.7 8.1 61 261-322 26-86 (109)
256 2ff4_A Probable regulatory pro 71.9 15 0.00051 38.5 10.0 67 517-583 173-247 (388)
257 4gns_B Protein CSD3, chitin bi 71.5 17 0.00058 41.5 10.8 51 522-572 344-397 (754)
258 2uwj_G Type III export protein 69.8 39 0.0013 27.0 9.1 88 192-284 19-106 (115)
259 2p58_C Putative type III secre 69.7 41 0.0014 26.9 9.4 88 192-284 20-107 (116)
260 3kea_A K1L; tropism, ANK repea 69.3 53 0.0018 32.3 13.1 118 286-416 132-252 (285)
261 4fhn_B Nucleoporin NUP120; pro 69.2 2.1E+02 0.007 34.8 22.2 56 415-471 814-869 (1139)
262 1wdy_A 2-5A-dependent ribonucl 68.8 53 0.0018 31.8 13.1 52 285-340 7-61 (285)
263 3txn_A 26S proteasome regulato 68.0 67 0.0023 33.4 13.6 90 519-609 103-209 (394)
264 1v54_E Cytochrome C oxidase po 67.6 29 0.00099 27.9 8.0 62 562-625 26-87 (109)
265 2qx5_A Nucleoporin NIC96; mRNA 66.8 1.7E+02 0.0057 32.8 18.3 83 450-544 300-385 (661)
266 1n11_A Ankyrin; clathrin, BAND 64.6 78 0.0027 33.2 14.2 79 54-140 22-104 (437)
267 2qx5_A Nucleoporin NIC96; mRNA 64.3 1.2E+02 0.0042 33.9 15.6 80 353-440 300-383 (661)
268 1zbp_A Hypothetical protein VP 62.2 20 0.0007 34.8 7.7 23 676-698 107-129 (273)
269 1zbp_A Hypothetical protein VP 61.1 11 0.00037 36.7 5.6 55 625-697 5-59 (273)
270 3o48_A Mitochondria fission 1 59.8 49 0.0017 28.2 8.7 67 613-697 36-106 (134)
271 1k1a_A B-cell lymphoma 3-encod 59.0 95 0.0032 29.0 12.4 85 253-341 14-102 (241)
272 2y69_E Cytochrome C oxidase su 57.1 52 0.0018 28.1 8.1 59 263-322 71-129 (152)
273 1wdy_A 2-5A-dependent ribonucl 56.9 1.4E+02 0.0047 28.6 14.2 20 418-437 221-240 (285)
274 3kea_A K1L; tropism, ANK repea 54.4 60 0.002 31.9 10.3 20 418-437 163-182 (285)
275 2y69_E Cytochrome C oxidase su 53.1 63 0.0021 27.6 8.0 60 564-625 71-130 (152)
276 1n11_A Ankyrin; clathrin, BAND 52.4 1.8E+02 0.0061 30.4 14.4 141 85-239 18-168 (437)
277 4fhn_B Nucleoporin NUP120; pro 50.7 1E+02 0.0035 37.5 13.2 52 219-271 817-868 (1139)
278 1k1a_A B-cell lymphoma 3-encod 46.5 1.4E+02 0.0047 27.9 11.2 18 221-238 13-30 (241)
279 4b4t_R RPN7, 26S proteasome re 46.3 53 0.0018 34.8 8.7 95 517-611 133-238 (429)
280 3eu9_A Huntingtin-interacting 45.7 1.8E+02 0.0063 26.7 12.1 19 221-239 46-64 (240)
281 3ltm_A Alpha-REP4; protein eng 45.0 1.8E+02 0.0062 26.5 17.6 83 521-608 101-183 (211)
282 3esl_A Checkpoint serine/threo 43.7 2E+02 0.0067 26.5 11.1 81 533-615 62-148 (202)
283 4b4t_R RPN7, 26S proteasome re 43.6 47 0.0016 35.2 7.8 96 548-643 133-234 (429)
284 2l0z_A Glycoprotein G2; zinc-b 42.9 7.8 0.00027 24.8 0.8 14 824-837 15-29 (42)
285 3ltj_A Alpharep-4; protein eng 40.8 2E+02 0.007 25.8 17.3 42 118-159 33-74 (201)
286 3ltj_A Alpharep-4; protein eng 38.2 2.2E+02 0.0077 25.5 18.2 50 410-459 25-74 (201)
287 3eiq_C Programmed cell death p 37.8 2.1E+02 0.0073 29.1 11.1 26 447-472 220-245 (358)
288 1qsa_A Protein (soluble lytic 37.5 4.6E+02 0.016 29.0 38.2 163 54-241 17-181 (618)
289 3eiq_C Programmed cell death p 37.1 2.7E+02 0.0091 28.4 11.7 64 417-480 221-289 (358)
290 3ljn_A Hypothetical protein; a 36.5 1.6E+02 0.0054 29.8 10.5 16 423-438 180-195 (364)
291 3ltm_A Alpha-REP4; protein eng 34.1 2.7E+02 0.0091 25.3 16.7 18 141-158 61-78 (211)
292 3d9h_A CDNA FLJ77766, highly s 33.8 1.6E+02 0.0055 28.6 9.6 17 219-235 17-33 (285)
293 3ljn_A Hypothetical protein; a 32.4 1.1E+02 0.0038 31.0 8.5 15 326-340 252-266 (364)
294 3aji_A 26S proteasome non-ATPa 31.6 2.2E+02 0.0074 26.2 9.9 18 222-239 11-28 (231)
295 2lo3_A SAGA-associated factor 31.4 16 0.00056 23.6 0.9 12 794-805 16-27 (44)
296 2k0q_A Putative uncharacterize 31.4 14 0.00047 27.0 0.7 23 813-835 7-29 (74)
297 2nsz_A Programmed cell death p 31.4 1.5E+02 0.0053 24.9 7.6 62 217-278 10-76 (129)
298 3hra_A Ankyrin repeat family p 31.3 2.2E+02 0.0076 25.4 9.7 16 124-139 13-28 (201)
299 4g8k_A 2-5A-dependent ribonucl 31.2 2.5E+02 0.0086 27.8 10.9 284 117-413 26-329 (337)
300 4b4t_S RPN3, 26S proteasome re 30.7 1.6E+02 0.0056 31.6 9.1 119 515-642 231-366 (523)
301 2zu6_B Programmed cell death p 29.9 2.3E+02 0.008 28.1 9.7 66 447-513 169-235 (307)
302 2zu6_B Programmed cell death p 29.3 4.3E+02 0.015 26.2 11.6 63 417-479 170-237 (307)
303 3hra_A Ankyrin repeat family p 28.2 3.2E+02 0.011 24.3 11.3 60 323-382 111-173 (201)
304 3b7b_A Euchromatic histone-lys 27.7 1.3E+02 0.0044 28.0 7.4 14 494-507 221-234 (237)
305 3eu9_A Huntingtin-interacting 27.0 2.5E+02 0.0087 25.7 9.5 48 89-140 17-66 (240)
306 4ady_A RPN2, 26S proteasome re 26.4 8.3E+02 0.028 28.6 31.5 26 283-308 233-258 (963)
307 2d2s_A Exocyst complex compone 25.5 2.5E+02 0.0084 26.6 8.6 22 251-272 24-45 (235)
308 2nsz_A Programmed cell death p 25.4 2.9E+02 0.01 23.1 8.3 61 519-579 11-76 (129)
309 2ion_A PDCD4, programmed cell 25.4 1.3E+02 0.0046 26.2 6.2 62 217-278 12-78 (152)
310 4a1g_A Mitotic checkpoint seri 24.6 3.5E+02 0.012 23.6 9.8 52 563-615 82-134 (152)
311 3jxi_A Vanilloid receptor-rela 24.1 4.1E+02 0.014 24.8 10.5 84 356-439 11-116 (260)
312 3twe_A Alpha4H; unknown functi 23.3 90 0.0031 17.2 2.8 17 728-744 3-19 (27)
313 3jxi_A Vanilloid receptor-rela 23.3 2.6E+02 0.009 26.3 8.9 25 255-279 12-36 (260)
314 2pnn_A Transient receptor pote 21.9 4.6E+02 0.016 24.7 10.5 14 327-340 110-123 (273)
315 2etb_A Transient receptor pote 21.9 2E+02 0.0067 27.2 7.6 84 355-438 7-112 (256)
316 2etb_A Transient receptor pote 21.4 4.2E+02 0.014 24.7 9.9 22 256-277 10-31 (256)
317 2wvi_A Mitotic checkpoint seri 21.3 4.3E+02 0.015 23.4 10.4 53 563-616 77-130 (164)
318 3ph0_C ASCG; type III secretio 21.1 60 0.002 22.7 2.3 24 620-643 25-48 (61)
319 2d2s_A Exocyst complex compone 20.8 2.4E+02 0.0082 26.7 7.5 23 49-71 24-46 (235)
320 3b7b_A Euchromatic histone-lys 20.7 3.1E+02 0.01 25.2 8.6 18 290-307 217-234 (237)
321 1qc6_A EVH1 domain from ENA/VA 20.4 35 0.0012 29.1 1.3 40 786-833 44-87 (130)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-39 Score=376.73 Aligned_cols=498 Identities=10% Similarity=-0.012 Sum_probs=404.1
Q ss_pred HHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 046257 123 YMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVH 202 (838)
Q Consensus 123 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~ 202 (838)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45678888899999999989999999999999999999999999999985 4678899999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC-------------------CcchHHHHHHHHHhCCChHH
Q 046257 203 TMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR-------------------DSITWNSMVAGYVTNELHME 263 (838)
Q Consensus 203 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~n~li~~~~~~g~~~~ 263 (838)
+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988654 678999999999999999999999999964433 47899999999999999999
Q ss_pred HHHHHHHhhhCCCCCChh-hHHHHHHHHhccCcHHH--HHHH-HHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHH
Q 046257 264 AFETFNNMGLAGAELTRS-TFVSVIKLCATTKELRL--ARQL-HSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFS 339 (838)
Q Consensus 264 A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 339 (838)
|+++|++|.+.+ |+.. .+..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998753 4433 44444443333322222 1222 4455555555566777888999999999999999999
Q ss_pred hccc-CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhH
Q 046257 340 MMRE-MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTA 418 (838)
Q Consensus 340 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (838)
++.+ .+++.+|+.++.+|.+.|++++|+++|++|.+.+.. +..++ +.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-------------------------------~~ 344 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVY-------------------------------PL 344 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTH-------------------------------HH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHH-------------------------------HH
Confidence 9973 378899999999999999999999999999875421 33333 56
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhh
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAA 495 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 495 (838)
++..|.+.|++++|.++|+.+.+ .+..+|+.++..|.+.|++++|+++|+++.+.. ..+..++..+...+... +.
T Consensus 345 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~ 422 (597)
T 2xpi_A 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE-GE 422 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CC
Confidence 88888999999999999987753 467789999999999999999999999987632 23467888888888888 99
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEM 572 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 572 (838)
.+.+..++..+.+.+ +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++..|.+.|++++|+++|++|
T Consensus 423 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 423 HDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998888764 4578889999999999999999999999876 567899999999999999999999999999
Q ss_pred HHc----CCCCC--hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 573 RRQ----DLEFD--GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 573 ~~~----g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
.+. +..|+ ..+|..++.+|...|++++|.++|+.+.+.. +.+...|..+..+|.+.|++++|.+.++++
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 576 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHES--- 576 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHH---
Confidence 986 67888 6789999999999999999999999998542 236788999999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
++++|+++.+|..|+++|..
T Consensus 577 ---------------l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 577 ---------------LAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp ---------------HHHCTTCHHHHHHHHHTTC-
T ss_pred ---------------HhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.5e-38 Score=363.89 Aligned_cols=487 Identities=9% Similarity=-0.016 Sum_probs=386.1
Q ss_pred hhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhC
Q 046257 29 KKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSG 108 (838)
Q Consensus 29 ~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 108 (838)
..++..|+.+|.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..+..+|...|+++.|..++..+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 146 (597)
T 2xpi_A 70 LKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY- 146 (597)
T ss_dssp ------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-
Confidence 35678889999899999999999999999999999999999854 578889999999999999999999999877543
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHccCC-CC------------------CcchHHHHHHHHHhCCCchHHHHHHHH
Q 046257 109 FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMN-ES------------------NVVSWTSLLSGYARNKMNDRVLELFHR 169 (838)
Q Consensus 109 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~ 169 (838)
++++.+++.++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++
T Consensus 147 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 147 -NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp -GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6889999999999999999999999999544 33 478999999999999999999999999
Q ss_pred HHHCCCCCC-hhhHHHHHHHHhcCCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--C
Q 046257 170 MQVEGIKPN-SFTFSTVLGVLADEGIVAT--AVQV-HTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--R 243 (838)
Q Consensus 170 m~~~g~~p~-~~t~~~ll~~~~~~g~~~~--a~~l-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~ 243 (838)
|.+.+ |+ ...+..+...+...+..+. +..+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ +
T Consensus 226 ~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 303 (597)
T 2xpi_A 226 ALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK 303 (597)
T ss_dssp HHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGG
T ss_pred HHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCc
Confidence 98864 44 3444445444433322221 1111 44444445555667788889999999999999999999988 7
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 046257 244 DSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMV 323 (838)
Q Consensus 244 ~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 323 (838)
+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 99999999999999999999999999998765 3367789999999999999999999999999765 567889999999
Q ss_pred HHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHH
Q 046257 324 AYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVH 401 (838)
Q Consensus 324 ~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~ 401 (838)
+|.+.|++++|.++|+++.+ ..+..+|+.++.+|.+.|++++|+++|++|.+.+ |+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-------------------- 439 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QG-------------------- 439 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TT--------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc--------------------
Confidence 99999999999999998753 4567899999999999999999999999998753 21
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC
Q 046257 402 AHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN 478 (838)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 478 (838)
+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|++|.+..
T Consensus 440 ----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 505 (597)
T 2xpi_A 440 ----------THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV---- 505 (597)
T ss_dssp ----------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred ----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh----
Confidence 223346788899999999999999998754 467889999999999999999999999886530
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA--LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
.+.+..|+ ..++..++.+|.+.|++++|.++|+++. +.+..+|..++
T Consensus 506 ----------------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 506 ----------------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp ----------------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred ----------------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 01123333 4566667777888888888888887764 44677888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVIT 589 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 589 (838)
.+|.+.|++++|.+.|+++.+ +.|+. ..+..+..
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKR 592 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 888888888888888888887 56654 34444433
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.2e-26 Score=256.55 Aligned_cols=185 Identities=14% Similarity=0.232 Sum_probs=175.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC--------hhhHHHHHHHHHHHHHhcCCCchh
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP--------SAAVEQGKQFHACSIKAKLNNALC 516 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 516 (838)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+.. .+.++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468899999999999999999999999999999999999999999754 145899999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHh
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR----KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACT 592 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 592 (838)
+||+||++|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 68999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhc
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRA 630 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 630 (838)
+.|++++|.++|++|. +.+..|+..+|+.+++.|.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 669999999999999999864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.9e-26 Score=253.77 Aligned_cols=184 Identities=9% Similarity=0.052 Sum_probs=159.9
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCchh
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI---------VATAVQVHTMVIKNGGEVVTS 215 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~l~~~~~~~g~~~~~~ 215 (838)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788888899999999999999999999999999999999999886554 678888999999999889988
Q ss_pred HHHHHHHHhHcCCChhHHHHHHhcCCC----CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHh
Q 046257 216 VCNALISMYLKSKMVRDARAVFDGMED----RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCA 291 (838)
Q Consensus 216 ~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 291 (838)
+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888888863 6888888888888888889999999999998899999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC
Q 046257 292 TTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKC 328 (838)
Q Consensus 292 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 328 (838)
+.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999888888888888887753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1e-22 Score=222.65 Aligned_cols=371 Identities=13% Similarity=0.175 Sum_probs=280.1
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCCh-hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh
Q 046257 253 AGYVTNELHMEAFETFNNMGLAGAELTR-STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 331 (838)
..+.+.|++++|++.+.++.+. .|+. ..+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455667777777777766554 3443 344445555666777777777777776654 45666777777777788888
Q ss_pred HHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhc
Q 046257 332 EDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNY 409 (838)
Q Consensus 332 ~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~ 409 (838)
++|...|+++.. +.+...|..+...+.+.|++++|++.|+++.+. .|+.....
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~----------------------- 138 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVR----------------------- 138 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHH-----------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH-----------------------
Confidence 888877777643 234456777778888888888888888777663 34443332
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC-HhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN-EFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 485 (838)
..+...|...|++++|.+.|+++.+ .+..+|+.+...|.+.|++++|++.|+++.+. .|+ ...+..+
T Consensus 139 -------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 209 (388)
T 1w3b_A 139 -------SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINL 209 (388)
T ss_dssp -------HHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred -------HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 3466667777888888888876653 24567788888888888888888888887763 344 3445555
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCh
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHT 562 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 562 (838)
-..+... +..+.+...+....+.. +.+..++..+...|.+.|++++|.+.|+++. +.+..+|+.+...|.+.|++
T Consensus 210 g~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEA-RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTT-TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 5555566 77777777777776654 3356778889999999999999999999875 44678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHh
Q 046257 563 KKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIIN 641 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~ 641 (838)
++|++.|+++.+.. +++..++..+...+...|++++|..+++.+.+ +.|+ ...+..+..+|.+.|++++|.+.++
T Consensus 288 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999852 34567899999999999999999999999973 3454 5678999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 642 RMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 642 ~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
++ ++++|+++.+|..++.+|...|+
T Consensus 364 ~a------------------~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EA------------------IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HH------------------HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HH------------------HhhCCCCHHHHHhHHHHHHHccC
Confidence 88 78899999999999999988764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=4e-22 Score=217.86 Aligned_cols=352 Identities=13% Similarity=0.152 Sum_probs=302.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChH
Q 046257 287 IKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAID 364 (838)
Q Consensus 287 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~ 364 (838)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|+.++|...++.... +.+...|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999998875 44566778888999999999999999988754 456678999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC--C
Q 046257 365 LAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE--K 442 (838)
Q Consensus 365 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~ 442 (838)
+|++.|+++... .|+... .+..+...|.+.|++++|.+.|+++.+ |
T Consensus 85 ~A~~~~~~al~~--~p~~~~------------------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFID------------------------------GYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHH------------------------------HHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHc--CcchHH------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999874 354332 235688889999999999999998764 3
Q ss_pred -CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC-HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHH
Q 046257 443 -DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSA 520 (838)
Q Consensus 443 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (838)
+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+... +..+.+...+..+++.. +.+...+..
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4457888889999999999999999999874 454 56777777788888 99999999999998865 345778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC
Q 046257 521 LVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL 596 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 596 (838)
+...|...|++++|...|++.. +.+..+|+.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999998765 45688999999999999999999999999999 5665 5688999999999999
Q ss_pred HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
+++|.++|+.+.+.. +++...+..+..++.+.|++++|.+.++++ +++.|+++.++..++
T Consensus 287 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~l~ 346 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKA------------------LEVFPEFAAAHSNLA 346 (388)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH------------------TTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhcCCCcHHHHHHHH
Confidence 999999999998542 346678999999999999999999999988 688999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHhh
Q 046257 677 NMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 677 ~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+|...|++++|.+.++++.+
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999975
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-20 Score=213.76 Aligned_cols=433 Identities=10% Similarity=-0.002 Sum_probs=230.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc
Q 046257 147 WTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK 226 (838)
Q Consensus 147 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~ 226 (838)
|......+.+.|++++|+..|+++.+.. ||..+|..+..++...|++++|...+..+++.+ +.+..++..+..+|.+
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445555556666666666666665543 455566666666666666666666666666554 3344555555555666
Q ss_pred CCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 046257 227 SKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLH 303 (838)
Q Consensus 227 ~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 303 (838)
.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-...............+.
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 6666666555554432 1222223333333222222222222222221111111111111000000000000000000
Q ss_pred HHHHHhCC---------CCChhHHHHHHHHHHc---CCChHHHHHHHHhccc----------------CCCeeehHHHHH
Q 046257 304 SQVLKNGI---------DFDHNIRTGLMVAYSK---CGKMEDASKIFSMMRE----------------MKDVVSWTAMIS 355 (838)
Q Consensus 304 ~~~~~~g~---------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~~~~~~~~~li~ 355 (838)
..+..... +.+...+..+...+.. .|++++|...|+++.. ..+...|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 00000000 1112222233333332 5666666666655542 112334555666
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHH
Q 046257 356 GHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKV 435 (838)
Q Consensus 356 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~ 435 (838)
.+...|++++|+..|+++.... |+.. ++..+...|...|++++|...
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~-------------------------------~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVN-------------------------------SYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHH-------------------------------HHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHH-------------------------------HHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666666665532 2211 113455556666666666666
Q ss_pred HHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCC
Q 046257 436 FELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLN 512 (838)
Q Consensus 436 f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~ 512 (838)
|+.+.. .+...|..+...|...|++++|+..|++.... .|+
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---------------------------------- 336 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPE---------------------------------- 336 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSS----------------------------------
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Chh----------------------------------
Confidence 665443 24455666666666667777777666666542 121
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-------h
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-------I 582 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~ 582 (838)
+...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .|+. .
T Consensus 337 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 413 (514)
T 2gw1_A 337 -NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYVGIA 413 (514)
T ss_dssp -CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSSCSH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHHHHH
Confidence 23344455566777788888888877654 345677888888888888888888888888773 3332 2
Q ss_pred HHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 046257 583 TFIGVITACTH---AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAA 658 (838)
Q Consensus 583 t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~ 658 (838)
++..+..++.. .|++++|..+|+.+... .| +...+..+..+|.+.|++++|.+.++++
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------------- 475 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKL---DPRSEQAKIGLAQMKLQQEDIDEAITLFEES--------------- 475 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------
Confidence 67777788888 88888888888887743 34 3456777888888888888888888876
Q ss_pred HHHhccCCCCchhHHHH
Q 046257 659 CRLISLQPHDSAIYVLL 675 (838)
Q Consensus 659 c~~~~l~P~~~~~y~~l 675 (838)
++++|+++..+..+
T Consensus 476 ---~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 476 ---ADLARTMEEKLQAI 489 (514)
T ss_dssp ---HHHCSSHHHHHHHH
T ss_pred ---HHhccccHHHHHHH
Confidence 66777766665554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-20 Score=211.13 Aligned_cols=418 Identities=11% Similarity=0.058 Sum_probs=298.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYS 326 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 326 (838)
.|......+.+.|++++|++.|+++.... |+..++..+..++.+.|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45555667777788888888888777654 677777777777888888888888888877765 345667777888888
Q ss_pred cCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcc-------------------cH
Q 046257 327 KCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGF-------------------TY 385 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------------------t~ 385 (838)
+.|++++|...|+++.. +.+......++..+........+.+.+..+...+..|+.. ..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 88888888888877653 2233334444444444333333333333332222222221 11
Q ss_pred HHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH---cCCHHHHHHHHHhcCC----------------C-Ccc
Q 046257 386 SIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK---KGILDEAAKVFELIDE----------------K-DIV 445 (838)
Q Consensus 386 ~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~ 445 (838)
...+..+........ ...+.+...+..+...+.. .|++++|...|+.+.+ + +..
T Consensus 165 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 165 ASFFGIFKPELTFAN------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp HHHHTTSCCCCCCSS------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHH------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 111111111100000 0000112222333333443 8999999999987654 1 345
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.|..+...|...|++++|+..|+++.... |+...+..+...+... +.++.+...+..+.+.. +.+..++..+...|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR-NDSTEYYNYFDKALKLD-SNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHH
Confidence 78889999999999999999999998753 4466777777778887 89999999998888764 34567888999999
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|++++|...|++.. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999864 456789999999999999999999999999984 454 567888999999999999999
Q ss_pred HHHHHHHhcCCccCC----CchHHHHHHHHHh---cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 602 QYFDIMVNEHHIYPT----MEHYSCMVDLYSR---AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~----~~~y~~lv~~l~r---~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
.+++.+.+...-.|+ ...+..+...+.+ .|++++|.+.++++ ++++|+++.++..
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a------------------~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA------------------SKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH------------------HHHCTTCHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH------------------HHhCcccHHHHHH
Confidence 999998754222222 2278899999999 99999999999987 7789999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 046257 675 LSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 675 l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++.+|...|++++|...+++..+
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.3e-19 Score=202.08 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=200.8
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhh
Q 046257 314 DHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTA 391 (838)
Q Consensus 314 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 391 (838)
+...+..+...|.+.|++++|..+|+++.. +.+...|..+...|.+.|++++|+..|+++.+.+ |+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~-------- 94 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFT-------- 94 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH--------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcH--------
Confidence 344555555555555555555555555432 2344555555555666666666666665555432 2211
Q ss_pred CCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCC---c---chHHHHH------------HH
Q 046257 392 QPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKD---I---VAWSAML------------AG 453 (838)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~---~~~~~li------------~~ 453 (838)
.++..+...|.+.|++++|.+.|+.+.+.+ . ..|..++ ..
T Consensus 95 ----------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 95 ----------------------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp ----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345555556666666666665554322 1 3344332 23
Q ss_pred HHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 046257 454 YAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIES 533 (838)
Q Consensus 454 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 533 (838)
|.+.|++++|++.|+++.+.. +.+...+..+...+... +..+.+...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 556666666666666665431 22334444444455544 55555555555555443 3356677778888888888888
Q ss_pred HHHHHHhcC---CCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHhc
Q 046257 534 ASEVFKRQR---KRDLVSWNSM------------ICGYAQHGHTKKALEVFKEMRRQDLEFDG-----ITFIGVITACTH 593 (838)
Q Consensus 534 A~~~f~~~~---~~~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~ 593 (838)
|.+.|+++. +.+...|..+ ...|...|++++|++.|+++.+ +.|+. ..+..+..++.+
T Consensus 230 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHH
Confidence 888888765 3345555555 7888888999999999999888 45663 367777888888
Q ss_pred cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
.|++++|..+++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ++++|+++.++
T Consensus 308 ~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~ 366 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETA------------------QEHNENDQQIR 366 (450)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTSSSCHHHH
T ss_pred CCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------HHhCcchHHHH
Confidence 99999999999888743 34 4577888888999999999999999887 78899999999
Q ss_pred HHHH------------HHHHhcC
Q 046257 673 VLLS------------NMYAATG 683 (838)
Q Consensus 673 ~~l~------------~~y~~~g 683 (838)
..++ +.|...|
T Consensus 367 ~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 367 EGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHhhcccchhHHHHhC
Confidence 9998 6677777
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=8.6e-19 Score=200.20 Aligned_cols=420 Identities=11% Similarity=0.067 Sum_probs=276.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 247 TWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYS 326 (838)
Q Consensus 247 ~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 326 (838)
.|..+...+.+.|++++|++.|+++.... +.+..++..+..++.+.|++++|.+.++.+++.. +.+..++..+...|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 34444555555555555555555555432 1233445555555555556666666655555554 234555555666666
Q ss_pred cCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhc------CCCCCcccHHHHHhhCCCCChhHH
Q 046257 327 KCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTRE------GVRPNGFTYSIILTAQPAVSPFQV 400 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~~ 400 (838)
+.|++++|.+.|+.+. .+....+..+..+...+...+|+..++++... ...|+.......+..+....
T Consensus 105 ~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 178 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS--LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL---- 178 (537)
T ss_dssp HHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH----
T ss_pred HcCCHHHHHHHHHHHh--cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH----
Confidence 6666666666665332 11222222333444445555666666665442 12222222222222111000
Q ss_pred HHHHHHhhccCCcc---hhhHHHHHH--------HHcCCHHHHHHHHHhcCCCCc----------chHHHHHHHHHhcCC
Q 046257 401 HAHIIKTNYEKSFS---VGTALLNAY--------VKKGILDEAAKVFELIDEKDI----------VAWSAMLAGYAQIGD 459 (838)
Q Consensus 401 ~~~~~~~~~~~~~~---~~~~Li~~y--------~~~g~~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~ 459 (838)
...........+.. ....+...+ ...|++++|..+|+.+.+.+. .+|..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 00000000011111 122222222 223588999999998865332 246677788889999
Q ss_pred chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 046257 460 TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFK 539 (838)
Q Consensus 460 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 539 (838)
+++|++.|+++... .|+...+..+-..+... +..+.+...+..+.+.. +.+..++..+...|.+.|++++|.+.|+
T Consensus 259 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINL--HPTPNSYIFLALTLADK-ENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh-cCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999874 57777777788888888 99999999999988865 3467788999999999999999999999
Q ss_pred hcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC
Q 046257 540 RQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP 615 (838)
Q Consensus 540 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 615 (838)
+.. +.+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.++|+.+.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 875 456789999999999999999999999999984 455 56788889999999999999999999875431112
Q ss_pred CC----chHHHHHHHHHhc----------CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 616 TM----EHYSCMVDLYSRA----------GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 616 ~~----~~y~~lv~~l~r~----------G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
.. ..+..+..+|.+. |++++|.+.++++ ++++|+++.++..++.+|..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA------------------CELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHH
Confidence 11 1134456778888 9999999999987 78899999999999999999
Q ss_pred cCCchHHHHHHHHHhhC
Q 046257 682 TGHWQERARVRKLMNDR 698 (838)
Q Consensus 682 ~g~~~~a~~~~~~m~~~ 698 (838)
.|++++|.+.+++..+.
T Consensus 475 ~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 475 MEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 99999999999998763
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=1.3e-18 Score=193.92 Aligned_cols=294 Identities=12% Similarity=0.134 Sum_probs=247.9
Q ss_pred CCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHH
Q 046257 345 KDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYV 424 (838)
Q Consensus 345 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~ 424 (838)
.+...|..+...|.+.|++++|+.+|+++.+. .|+. ..++..+...|.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~------------------------------~~~~~~l~~~~~ 71 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDN------------------------------YIAYYRRATVFL 71 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcc------------------------------HHHHHHHHHHHH
Confidence 45677899999999999999999999999874 2322 223356888899
Q ss_pred HcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHh----hHHHHHH----------
Q 046257 425 KKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEF----TFSSVIN---------- 487 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~---------- 487 (838)
+.|++++|...|+.+.+ .+...|..+...|.+.|++++|++.|+++.+. .|+.. .+..+..
T Consensus 72 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 72 AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998764 35678999999999999999999999999874 56543 3333322
Q ss_pred --HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCh
Q 046257 488 --ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHT 562 (838)
Q Consensus 488 --a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 562 (838)
.+... +.++.+...+..+.+.. +.+..++..+..+|.++|++++|.+.|+++. +.+..+|+.++..|...|++
T Consensus 150 a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 150 ALNAFGS-GDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 24444 88999999999888764 4577889999999999999999999999876 56789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhH-HHHH------------HHHHhccCCHHHHHHHHHHHHhcCCccCC-----CchHHHHH
Q 046257 563 KKALEVFKEMRRQDLEFDGIT-FIGV------------ITACTHAGLVDEGQQYFDIMVNEHHIYPT-----MEHYSCMV 624 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv 624 (838)
++|++.|+++.+ ..|+... +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|.+++
T Consensus 228 ~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 228 ELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERIC 302 (450)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHH
Confidence 999999999998 5676544 3333 78899999999999999999853 455 34789999
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.++.+.|++++|.+.++++ ++++|+++.+|..++.+|...|++++|...++++.+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEV------------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999987 678999999999999999999999999999999976
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=7.7e-18 Score=192.25 Aligned_cols=413 Identities=10% Similarity=0.062 Sum_probs=252.0
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 046257 145 VSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMY 224 (838)
Q Consensus 145 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y 224 (838)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.+..+++.+ +.+..++..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456677777788888888888888877654 2356677777777788888888888888887775 45667777788888
Q ss_pred HcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhC------CCCCChhhHHHHHHHHhccCcHHH
Q 046257 225 LKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLA------GAELTRSTFVSVIKLCATTKELRL 298 (838)
Q Consensus 225 ~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 298 (838)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+ ...+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHHH
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChHH
Confidence 88888888888886432 22223333344555556667777777777543 1233333332222 2222222
Q ss_pred HHHHHHHHHHhCCCCChh---HHHHHHHHHHcC--------CChHHHHHHHHhccc-CCC-e-------eehHHHHHHHH
Q 046257 299 ARQLHSQVLKNGIDFDHN---IRTGLMVAYSKC--------GKMEDASKIFSMMRE-MKD-V-------VSWTAMISGHL 358 (838)
Q Consensus 299 a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~~--------g~~~~A~~~f~~~~~-~~~-~-------~~~~~li~~~~ 358 (838)
+...+.. ....+.. ....+...+... |++++|..+|+++.+ .|+ . ..|..+...+.
T Consensus 179 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence 2211111 1111111 233333333222 355666666666542 121 1 12444445555
Q ss_pred HcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 359 QNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 359 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
..|++++|+..|++.... .|+...+ ..+...|...|++++|.+.|+.
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~-------------------------------~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSY-------------------------------IFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHH-------------------------------HHHHHHTCCSSCCHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHH-------------------------------HHHHHHHHHhcCHHHHHHHHHH
Confidence 666666666666666553 2221111 2344445555666666666554
Q ss_pred cCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCch
Q 046257 439 IDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNAL 515 (838)
Q Consensus 439 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (838)
..+ .+...|..+...|...|++++|++.|++... .. +.+.
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------------------------~~-~~~~ 344 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS------------------------------------LN-PENV 344 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------HC-TTCS
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------------------------hC-CCCH
Confidence 432 2344555555556666666666665555543 22 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-------hHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-------ITFI 585 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~ 585 (838)
..+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.. |+. ..+.
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLI 422 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHH
Confidence 556667788899999999999998775 4567789999999999999999999999988743 321 1234
Q ss_pred HHHHHHhcc----------CCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 586 GVITACTHA----------GLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 586 ~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.....+... |++++|..+|+.+.+. .| +...+..+..+|.+.|++++|.+.++++
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445566666 9999999999998854 34 4567888999999999999999999987
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=2.2e-13 Score=160.19 Aligned_cols=596 Identities=12% Similarity=0.139 Sum_probs=330.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 046257 48 RLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTN 127 (838)
Q Consensus 48 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 127 (838)
-.+..+++.|++++++..-++ .|..|| |..+|+.+.+. +++.|.++-..+.+.. +.....+.+++.+...+
T Consensus 487 Kvi~~l~~~gq~~ki~~Y~~~---~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~--~p~~d~~~ivd~f~~~~ 557 (1630)
T 1xi4_A 487 KVIQCFAETGQVQKIVLYAKK---VGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDE--EPLADITQIVDVFMEYN 557 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHhc---cCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCC--CCccCHHHHHHHHHhcC
Confidence 456677777777777665332 344444 55566666543 3555555444433332 13333455666666666
Q ss_pred ChHHHHHHHccCCC------------------------------C---CcchHHHHHHHHHhCCCchHHHHHHHHHHH--
Q 046257 128 NVEDGRRVFDDMNE------------------------------S---NVVSWTSLLSGYARNKMNDRVLELFHRMQV-- 172 (838)
Q Consensus 128 ~~~~A~~~f~~m~~------------------------------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-- 172 (838)
.+.++..++-+..+ . +..-|..+...|-++|-++.|++.|..+..
T Consensus 558 ~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dik 637 (1630)
T 1xi4_A 558 LIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIK 637 (1630)
T ss_pred cHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhcCccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHH
Confidence 66666655533221 1 122366777788888888888888875521
Q ss_pred CCCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-------------------------------------------
Q 046257 173 EGIK-PNSFTFSTVLGVLADEGIVATAVQVHTMVIKN------------------------------------------- 208 (838)
Q Consensus 173 ~g~~-p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~------------------------------------------- 208 (838)
+-+. .....=..+..-+++ =..+.+.+.+..|++.
T Consensus 638 R~~~~~~~~~~~~l~~~fg~-l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~ 716 (1630)
T 1xi4_A 638 RAVVHTHLLNPEWLVNYFGS-LSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLG 716 (1630)
T ss_pred HHhhccCcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHH
Confidence 1000 001111122222222 2234444444444431
Q ss_pred ---CCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---------------CC----------------cch------H
Q 046257 209 ---GGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---------------RD----------------SIT------W 248 (838)
Q Consensus 209 ---g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---------------~~----------------~~~------~ 248 (838)
.+..|+.+....|.+.++.|++.+.+++..+-.- +| .+. .
T Consensus 717 siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~ 796 (1630)
T 1xi4_A 717 SIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 796 (1630)
T ss_pred hhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCc
Confidence 1244777778889999999999988888766321 11 111 1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhCCCC-----------CChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhH
Q 046257 249 NSMVAGYVTNELHMEAFETFNNMGLAGAE-----------LTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNI 317 (838)
Q Consensus 249 n~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 317 (838)
...|..|++.-++..+-.+.-.+.+.... .+......++..+.+.+++..-..+++.-+..| ..++.+
T Consensus 797 ~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~ 875 (1630)
T 1xi4_A 797 QKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPAT 875 (1630)
T ss_pred hhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHH
Confidence 22455555544333333222222221111 111113334444455555555555666666666 457778
Q ss_pred HHHHHHHHHcCCChHHHH-H-------------------------------------------HHHhc----ccCCCeee
Q 046257 318 RTGLMVAYSKCGKMEDAS-K-------------------------------------------IFSMM----REMKDVVS 349 (838)
Q Consensus 318 ~~~Li~~y~~~g~~~~A~-~-------------------------------------------~f~~~----~~~~~~~~ 349 (838)
+|+|...|...++-.+.. + +|+.. .+..|...
T Consensus 876 hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~l 955 (1630)
T 1xi4_A 876 HNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPEL 955 (1630)
T ss_pred HHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHH
Confidence 888887777554322220 0 00000 00111112
Q ss_pred h--------------------------------HHHHHHHHHcCChHHHHHHHHHhhhcCCC--CCcccHHHHHhhCCCC
Q 046257 350 W--------------------------------TAMISGHLQNGAIDLAVNFFCQMTREGVR--PNGFTYSIILTAQPAV 395 (838)
Q Consensus 350 ~--------------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~ 395 (838)
| ...+.+|...|.+.+|++++++....+-. -+...-+.++.+..+.
T Consensus 956 W~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka 1035 (1630)
T 1xi4_A 956 WGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA 1035 (1630)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 2 33455677778888888888877743110 0011111111111111
Q ss_pred ChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCC
Q 046257 396 SPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV 475 (838)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 475 (838)
..-.....+.+.. ......+...+...|.+++|..+|++... .....+.++ -..|++++|.++..+..
T Consensus 1036 D~~Rv~eyI~kLd----~~d~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn---- 1103 (1630)
T 1xi4_A 1036 DRTRVMEYINRLD----NYDAPDIANIAISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN---- 1103 (1630)
T ss_pred ChhhHHHHHHHhh----hccHHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC----
Confidence 1111111111111 11123355566667777777777777531 111112222 25666777777766442
Q ss_pred CCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHH
Q 046257 476 KPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMI 553 (838)
Q Consensus 476 ~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li 553 (838)
+..+|..+-.++... +.+++|...+... .|...|..++..|.+.|++++|.+.+.... .++....+.++
T Consensus 1104 --~p~vWsqLAKAql~~-G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1104 --EPAVWSQLAKAQLQK-GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred --CHHHHHHHHHHHHhC-CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 245566666666666 7777776666332 455566667777777777777777776544 22322333477
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCH
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGML 633 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~ 633 (838)
.+|++.++.++ ++-| +. .|+...|..+...|...|++++|..+|... ..|..++..|.+.|++
T Consensus 1175 faYAKl~rlee-le~f---I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAE-LEEF---IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHhhcCHHH-HHHH---Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCH
Confidence 77777777664 3333 21 445566777888899999999999999875 3799999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHH-----------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACR-----------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~-----------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
++|.+.+++. .+..+|.-+-.+|. .+.+ ..++..+..+++.|.+.|.|++|.++++.-.
T Consensus 1238 q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~I-iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1238 QAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHI-VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999987 46689998888873 2232 2377788899999999999999999986543
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=6.6e-14 Score=164.57 Aligned_cols=507 Identities=13% Similarity=0.098 Sum_probs=310.5
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC-ChhhHHHHHHHHHHhCCCCChhHHHHH
Q 046257 41 RNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF-DHVFGRQVHCECVKSGFARDVNVSTSL 119 (838)
Q Consensus 41 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~l 119 (838)
++..+-+-|+...-+.++..-.+..++.-...| ..++.++|+|.+.|...+ +++.-+ +. |.+-=+.+
T Consensus 837 ~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL-------~~----n~~yd~~~ 904 (1630)
T 1xi4_A 837 RGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFL-------RE----NPYYDSRV 904 (1630)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHh-------hc----cCcccHHH
Confidence 455556677777767777666667777777777 567788888888887554 333211 10 11111122
Q ss_pred HHHHHhCCChHHHHHHHccC------------------------CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 046257 120 VDLYMRTNNVEDGRRVFDDM------------------------NESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGI 175 (838)
Q Consensus 120 i~~y~~~g~~~~A~~~f~~m------------------------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 175 (838)
+.-||...+...|.-.+++= .+.|...|+.++.- . -+.=.++.++-....+
T Consensus 905 vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~---~--n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 905 VGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE---S--NPYRRPLIDQVVQTAL 979 (1630)
T ss_pred HHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC---C--cHHHHHHHHHHHHhhc
Confidence 23333333333333333221 11455556655521 1 1111122222211111
Q ss_pred --CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHH
Q 046257 176 --KPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNG--GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSM 251 (838)
Q Consensus 176 --~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~l 251 (838)
.-|+.-.....+++...|...++.++++.++-.+ +..+....+.|+....+. +..+..+..+....-+ ...+
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eI 1055 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDI 1055 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHH
Confidence 1233444667888889999999999999998442 124556777788777776 5566666666655322 4557
Q ss_pred HHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCCh
Q 046257 252 VAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKM 331 (838)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 331 (838)
...+...|.+++|..+|++.. -.......++. ..+++++|.++.+++ .+..+|..+..++.+.|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 788889999999999999852 11112233322 668899998888765 4578899999999999999
Q ss_pred HHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccC
Q 046257 332 EDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEK 411 (838)
Q Consensus 332 ~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 411 (838)
++|...|.+. .|...|..++..+.+.|++++|++.|...++.. ++....
T Consensus 1122 kEAIdsYiKA---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Id-------------------------- 1170 (1630)
T 1xi4_A 1122 KEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE-------------------------- 1170 (1630)
T ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccccc--------------------------
Confidence 9999999764 577888899999999999999999998876643 222222
Q ss_pred CcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 412 SFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 412 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
+.++..|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+...+.+
T Consensus 1171 -----t~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1171 -----TELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred -----HHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence 22444555555555332221 2333444445555555555555555555543 244455555555
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
. +.++.|.+..... .+..+|..+..++...|++..|...... ..-+...+..++..|...|.+++|+.+++.
T Consensus 1234 L-ge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1234 L-GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred h-CCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 5555555554433 2345555555556666777777766554 223444566778888888888888888877
Q ss_pred HHHcCCCCCh-hHH--HHHHHHHhccCCHHHHHHHHHHHHhcCCccC------CCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 572 MRRQDLEFDG-ITF--IGVITACTHAGLVDEGQQYFDIMVNEHHIYP------TMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 572 m~~~g~~pd~-~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
.+. +.|.+ ..| ...+.+-.+-+++.|+.++|..-. .++| +..+|.-++-+|.+.|+++.|...+-+
T Consensus 1306 aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1306 ALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred Hhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 765 44543 233 455555556667777777776433 3333 345688888899999999988865544
Q ss_pred C
Q 046257 643 M 643 (838)
Q Consensus 643 m 643 (838)
-
T Consensus 1381 h 1381 (1630)
T 1xi4_A 1381 H 1381 (1630)
T ss_pred c
Confidence 3
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=6.8e-16 Score=165.68 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=237.9
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC
Q 046257 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG 427 (838)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g 427 (838)
..|..+...+.+.|++++|+..|+++... .|+.. .++..+...|...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~------------------------------~~~~~~a~~~~~~~ 51 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNY------------------------------IAYYRRATVFLAMG 51 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------------------------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccH------------------------------HHHHHHHHHHHHcc
Confidence 34556667777788888888888877763 23221 12245677788888
Q ss_pred CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC---CHh-hHHHH------------HHH
Q 046257 428 ILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP---NEF-TFSSV------------INA 488 (838)
Q Consensus 428 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~-t~~~l------------l~a 488 (838)
++++|...|+...+ .+...|..+...|.+.|++++|+..|+++.+. .| +.. .+..+ ...
T Consensus 52 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 52 KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887653 35567888888888888888888888888764 45 332 22222 234
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKA 565 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 565 (838)
+... +..+.+...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|
T Consensus 130 ~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 130 AFDG-ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4455 88888888888887764 3467788889999999999999999998875 45788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-HHH------------HHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----chHHHHHHHH
Q 046257 566 LEVFKEMRRQDLEFDGI-TFI------------GVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EHYSCMVDLY 627 (838)
Q Consensus 566 ~~l~~~m~~~g~~pd~~-t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l 627 (838)
++.|++..+ ..|+.. ++. .+...+...|++++|..+++.+.+.. |+. ..+..+...+
T Consensus 208 ~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 208 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHH
Confidence 999999998 456543 222 23566889999999999999988543 443 2355678899
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcee
Q 046257 628 SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYS 707 (838)
Q Consensus 628 ~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s 707 (838)
.+.|++++|.+.+++. ++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 283 ~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------- 335 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEV------------------LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------- 335 (359)
T ss_dssp HHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------
T ss_pred HHccCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------
Confidence 9999999999999987 7789999999999999999999999999999998763
Q ss_pred EEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 708 WIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 708 ~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
.|....+...+.++...+++
T Consensus 336 -----------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 336 -----------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCChHHHHHHHHHHHHHHH
Confidence 35556666677766665543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=2.5e-15 Score=161.18 Aligned_cols=324 Identities=10% Similarity=0.024 Sum_probs=211.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 046257 245 SITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVA 324 (838)
Q Consensus 245 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 324 (838)
+..|..+...+...|++++|++.|++..+.. +.+..++..+...+...|+++.|...++.+++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------------- 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------
Confidence 3445566666666777777777766665432 1223344444445555555555555555554442
Q ss_pred HHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCC---CcccHHHHHhhCCCCChhHHH
Q 046257 325 YSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRP---NGFTYSIILTAQPAVSPFQVH 401 (838)
Q Consensus 325 y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~~~~~ 401 (838)
+.+...|..+...|...|++++|...|++..+. .| +.......+..
T Consensus 68 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~---------- 116 (359)
T 3ieg_A 68 -------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK---------- 116 (359)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH----------
T ss_pred -------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH----------
Confidence 223344555555555555555555555555442 22 11111000000
Q ss_pred HHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCC
Q 046257 402 AHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPN 478 (838)
Q Consensus 402 ~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 478 (838)
+ ........+...+...|++++|.+.|+.+.+ .+...|..+...|...|++++|++.|+++... .|+
T Consensus 117 --~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~ 186 (359)
T 3ieg_A 117 --A------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSD 186 (359)
T ss_dssp --H------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSC
T ss_pred --H------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 0 0000112345677888888888888887653 35567888888888888888888888887753 232
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHH-----
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWN----- 550 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~----- 550 (838)
+...+..+...|.+.|++++|.+.|++.. +.+...|.
T Consensus 187 -----------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 187 -----------------------------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 23344456667888888999888888765 33444443
Q ss_pred -------HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CC
Q 046257 551 -------SMICGYAQHGHTKKALEVFKEMRRQDLEFDGI-----TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TM 617 (838)
Q Consensus 551 -------~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~ 617 (838)
.+...+...|++++|++.|+++.+. .|+.. .+..+..++.+.|++++|..+++...+. .| +.
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 306 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---EPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CcccH
Confidence 2366789999999999999999984 46542 2445677889999999999999999854 35 56
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
..+..+..+|.+.|++++|.+.++++ ++++|+++.++..|..++...
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a------------------~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAA------------------QEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHH
Confidence 78889999999999999999999987 788998988888887776543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=6.4e-15 Score=156.13 Aligned_cols=285 Identities=14% Similarity=0.058 Sum_probs=212.7
Q ss_pred CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHH
Q 046257 312 DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIIL 389 (838)
Q Consensus 312 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 389 (838)
+.+..++..+...+...|++++|.++|+++.. +.+...+..++..+.+.|++++|..+++++.+. .|+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~------- 89 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSN------- 89 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTS-------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCC-------
Confidence 44556666667777777777777777777643 334455666677777778888888888777663 2221
Q ss_pred hhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC-CHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHH
Q 046257 390 TAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG-ILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVK 465 (838)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 465 (838)
..++..+...|...| ++++|.+.|+...+ .+...|..+...|...|++++|++
T Consensus 90 -----------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 90 -----------------------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp -----------------------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 112245666677777 77888887776643 245678888888888888888888
Q ss_pred HHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 046257 466 IYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--- 542 (838)
Q Consensus 466 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 542 (838)
.|+++.+. .|+ +...+..+...|...|++++|.+.|++..
T Consensus 147 ~~~~a~~~--~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 147 AYFTAAQL--MKG-----------------------------------CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp HHHHHHHH--TTT-----------------------------------CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHh--ccc-----------------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88877653 222 22333446667889999999999998765
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--------CCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL--------EFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY 614 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 614 (838)
+.+...|..+...|...|++++|++.|++..+..- ..+..++..+..++...|++++|..+++...+.. +
T Consensus 190 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~ 267 (330)
T 3hym_B 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--P 267 (330)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--c
Confidence 45678999999999999999999999999987421 2234688899999999999999999999988542 2
Q ss_pred CCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH-HhcCCc
Q 046257 615 PTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY-AATGHW 685 (838)
Q Consensus 615 p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y-~~~g~~ 685 (838)
.+...+..+..+|.+.|++++|.+.++++ ++++|+++..+..++.+| ...|+.
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTA------------------LGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTT------------------TTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHH------------------HccCCCchHHHHHHHHHHHHHhCch
Confidence 35678889999999999999999999998 788999999999999988 455553
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.4e-14 Score=153.56 Aligned_cols=278 Identities=14% Similarity=0.103 Sum_probs=114.9
Q ss_pred chhhHHhhccCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh
Q 046257 28 SKKDQSLFDRSPQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS 107 (838)
Q Consensus 28 ~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 107 (838)
.++|...|++++.|. .|..|..++...|++.+|++.|.+ .+|..+|..++.+|...|++++|...+...++.
T Consensus 19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 678999999997764 899999999999999999999976 367789999999999999999999988877774
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 108 GFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 108 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
.+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|..+|..+ ..|..+..
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 45678899999999999999999988864 77789999999999999999999999976 47888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 046257 188 VLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFET 267 (838)
Q Consensus 188 ~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l 267 (838)
++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888776 367788888888888888888877666544 3333344577777777777777777
Q ss_pred HHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcC--CChHHHHHHHHhccc--
Q 046257 268 FNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKC--GKMEDASKIFSMMRE-- 343 (838)
Q Consensus 268 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~~~-- 343 (838)
++...... ......|+-+ .-.|++- +++.+..++|..-.+
T Consensus 230 Le~aL~le-~ah~~~ftel-----------------------------------~il~~ky~p~k~~ehl~~~~~~ini~ 273 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTEL-----------------------------------AILYSKFKPQKMREHLELFWSRVNIP 273 (449)
T ss_dssp HHHHTTST-TCCHHHHHHH-----------------------------------HHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred HHHHhCCc-HHHHHHHHHH-----------------------------------HHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence 77665322 1112222222 2222222 333344444433221
Q ss_pred -----CCCeeehHHHHHHHHHcCChHHHHHHH
Q 046257 344 -----MKDVVSWTAMISGHLQNGAIDLAVNFF 370 (838)
Q Consensus 344 -----~~~~~~~~~li~~~~~~g~~~~A~~l~ 370 (838)
..+...|..+.-.|.+.++++.|....
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 124557888888888888888887643
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=2.1e-15 Score=159.91 Aligned_cols=304 Identities=13% Similarity=0.110 Sum_probs=136.7
Q ss_pred HhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 046257 124 MRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHT 203 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~ 203 (838)
-+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996664 8999999999999999999999652 677899999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhH
Q 046257 204 MVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTF 283 (838)
Q Consensus 204 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 283 (838)
..++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45678889999999999999998888853 67789999999999999999999999977 378
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCCh
Q 046257 284 VSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAI 363 (838)
Q Consensus 284 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~ 363 (838)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+......++..|.+.|++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999998887 378899999999999999999977766654 2223344688899999999
Q ss_pred HHHHHHHHHhhhcCCCCCc-ccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHH--HcCCHHHHHHHHHhcC
Q 046257 364 DLAVNFFCQMTREGVRPNG-FTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYV--KKGILDEAAKVFELID 440 (838)
Q Consensus 364 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~--~~g~~~~A~~~f~~~~ 440 (838)
++|..+++..... .+.. ..| +-|.-.|+ +-+++.+..+.|..-.
T Consensus 224 eEai~lLe~aL~l--e~ah~~~f-------------------------------tel~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 224 EELITMLEAALGL--ERAHMGMF-------------------------------TELAILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp HHHHHHHHHHTTS--TTCCHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHhCC--cHHHHHHH-------------------------------HHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 9999999887643 2211 111 22333333 3455666666665332
Q ss_pred C--------CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 441 E--------KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 441 ~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
. .+...|..+.-.|.+.++++.|....- ......-+...|--++.--+..
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~--~h~~~a~~~~~f~~~~~kv~n~ 328 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM--NHPTDAWKEGQFKDIITKVANV 328 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH--HSTTTTCCHHHHHHHHHHCSST
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH--hCChhhhhhHHHHHHHhchhHH
Confidence 2 256789999999999999999887542 2222334455555555444333
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.68 E-value=6.9e-15 Score=152.76 Aligned_cols=220 Identities=14% Similarity=0.104 Sum_probs=169.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHH
Q 046257 419 LLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 498 (838)
+..+|...|++++|...++....++..++..+...|...|+.++|++.++++...+..|+...
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~----------------- 102 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT----------------- 102 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH-----------------
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH-----------------
Confidence 455666667776666666554334445566666666666666677776666665544454433
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 578 (838)
.+..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+. .
T Consensus 103 ------------------~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 103 ------------------FLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp ------------------HHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred ------------------HHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 333445668899999999999998 668889999999999999999999999999994 5
Q ss_pred CChhHH---HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 046257 579 FDGITF---IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 579 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
|+.... .+.+..+...|++++|..+|+.+.+.. +.+...++.+..++.+.|++++|++.+++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~a------------ 226 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEA------------ 226 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------
Confidence 775322 123344455699999999999998653 346678999999999999999999999987
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchH-HHHHHHHHhh
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQE-RARVRKLMND 697 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~-a~~~~~~m~~ 697 (838)
++++|+++.++..++.++...|++++ +.++++++.+
T Consensus 227 ------l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 227 ------LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp ------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999999999987 5688888765
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=2e-14 Score=152.33 Aligned_cols=264 Identities=9% Similarity=0.078 Sum_probs=221.9
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCC-CHhhHHHH
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKP-NEFTFSSV 485 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 485 (838)
+.+..+...+...+...|++++|.++|+.+.+ .+...+..++..+.+.|++++|+.+++++.+. .| +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHH
Confidence 34455566788889999999999999998764 35567788889999999999999999999874 34 34556666
Q ss_pred HHHhcCChh-hHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC
Q 046257 486 INACTAPSA-AVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGH 561 (838)
Q Consensus 486 l~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 561 (838)
-..+... + ..+.+...+..+.+.. +.+...+..+...|...|++++|.+.|++.. +.+...|..+...|...|+
T Consensus 97 ~~~~~~~-~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMV-GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHS-CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 6666666 7 8999999999988765 3457788899999999999999999999876 4456788889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-------ccCCCchHHHHHHHHHhcCCH
Q 046257 562 TKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHH-------IYPTMEHYSCMVDLYSRAGML 633 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~lv~~l~r~G~~ 633 (838)
+++|++.|++..+ ..|+ ..++..+...+...|++++|..+++.+.+... .......+..+..+|.+.|++
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998 4555 57788899999999999999999998875321 123356889999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++|.+.+++. ++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQA------------------LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHH------------------HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH------------------HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999987 788999999999999999999999999999997754
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=5e-17 Score=185.09 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=115.7
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 046257 510 KLNNALCVSSALVTMYSKKGNIESASEVFKRQR-------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI 582 (838)
Q Consensus 510 ~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 582 (838)
....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344456789999999999999999999997753 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHH
Q 046257 583 TFIGVITACTHAGL-VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDI 639 (838)
Q Consensus 583 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~ 639 (838)
||+++|.++++.|. .++|.++|+.|. +.|+.||..+|+|++....|.+-++...++
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999999997 578999999998 569999999999999988887655555444
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=2.9e-13 Score=152.33 Aligned_cols=364 Identities=13% Similarity=0.073 Sum_probs=230.3
Q ss_pred hhHHHHHHHHhHc----CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHhhhCCCCCChhhHH
Q 046257 214 TSVCNALISMYLK----SKMVRDARAVFDGMED-RDSITWNSMVAGYVT----NELHMEAFETFNNMGLAGAELTRSTFV 284 (838)
Q Consensus 214 ~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 284 (838)
......|...|.. .+++++|...|+...+ .+...+..+...|.. .+++++|++.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3333444444444 4555555555543322 234444455555555 555666666666555443 333344
Q ss_pred HHHHHHhc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHHHHHHHhcccCCCeeehHHHHHH
Q 046257 285 SVIKLCAT----TKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDASKIFSMMREMKDVVSWTAMISG 356 (838)
Q Consensus 285 ~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~li~~ 356 (838)
.+-..+.. .++.++|...++...+.| +...+..|..+|.. .++.++|.+.|++..+..+...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 456666666666666554 34455556666665 56677777777766545556666666666
Q ss_pred HHH----cCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH----cCC
Q 046257 357 HLQ----NGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK----KGI 428 (838)
Q Consensus 357 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~----~g~ 428 (838)
|.. .++.++|++.|++..+.|. ... ...|..+|.. .++
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a-------------------------------~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSGD---ELG-------------------------------QLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC---HHH-------------------------------HHHHHHHHHHTSSSCCC
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCCC---HHH-------------------------------HHHHHHHHHcCCCCCCC
Confidence 666 6777777777777665431 111 1234455554 566
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHH
Q 046257 429 LDEAAKVFELIDE-KDIVAWSAMLAGYAQ----IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFH 503 (838)
Q Consensus 429 ~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 503 (838)
+++|.+.|+...+ .+...+..+...|.. .++.++|++.|++..+.|
T Consensus 239 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------------------- 289 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-----------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-----------------------------
Confidence 7777777765543 344555556666665 667777777777665432
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH
Q 046257 504 ACSIKAKLNNALCVSSALVTMYSKK-----GNIESASEVFKRQR-KRDLVSWNSMICGYAQHG---HTKKALEVFKEMRR 574 (838)
Q Consensus 504 ~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~ 574 (838)
+......|..+|... ++.++|...|++.. ..+...+..+...|...| +.++|++.|++..+
T Consensus 290 ----------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 290 ----------NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp ----------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 112223344455555 88999999988765 456778888888888766 78899999999998
Q ss_pred cCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cCCHHHHHHHHhhCCCC
Q 046257 575 QDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AGMLEKAMDIINRMPFA 646 (838)
Q Consensus 575 ~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G~~~~A~~~~~~m~~~ 646 (838)
.| +...+..+...+.. .++.++|.++|+...+. + +...+..|..+|.+ .|++++|.+.+++.
T Consensus 360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A--- 429 (490)
T 2xm6_A 360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA--- 429 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---
Confidence 64 56677778888877 78999999999998743 2 45677888899988 89999999999986
Q ss_pred CCHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHh
Q 046257 647 ASATVWRTVLAACRLISLQP---HDSAIYVLLSNMYAA 681 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P---~~~~~y~~l~~~y~~ 681 (838)
++.+| .++.....|+.++..
T Consensus 430 ---------------~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 430 ---------------STNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp ---------------HHHHCCHHHHHHHHHHHTTSCHH
T ss_pred ---------------HHCCCCCcCCHHHHHHHHhcCHh
Confidence 45553 366666677666654
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.62 E-value=1.7e-14 Score=155.72 Aligned_cols=293 Identities=12% Similarity=0.045 Sum_probs=215.0
Q ss_pred HHHcCCChHHHHH-HHHhccc--C--C--CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 324 AYSKCGKMEDASK-IFSMMRE--M--K--DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 324 ~y~~~g~~~~A~~-~f~~~~~--~--~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
.|.-.|++++|.. .|++... . | +...|..+...+.+.|++++|+..|+++.+. .|+..
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~------------- 98 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHM------------- 98 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCH-------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH-------------
Confidence 4556688999998 8886543 1 1 3567888999999999999999999999875 23322
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
.++..+...|.+.|++++|.+.|+.+.+ .+..+|..+...|...|++++|++.|+++...
T Consensus 99 -----------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 99 -----------------EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp -----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2235678889999999999999997653 46778999999999999999999999999874
Q ss_pred CCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC---CHHH
Q 046257 474 GVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR---DLVS 548 (838)
Q Consensus 474 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~---~~~~ 548 (838)
.|+.......+.... +. ..+ ......+...+ +.|++++|...|+++. .| +..+
T Consensus 162 --~~~~~~~~~~~~~~~---~~---------------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 162 --TPAYAHLVTPAEEGA---GG---------------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp --STTTGGGCC----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred --CcCcHHHHHHHHHHh---hh---------------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 344332211110000 00 000 00111222334 8899999999998875 33 5788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDL 626 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 626 (838)
|..+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .| +...+..+..+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~ 294 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGIS 294 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHH
Confidence 999999999999999999999999984 555 578889999999999999999999998853 34 45678899999
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHHhcCCchHHHHHHH
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD-----------SAIYVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~-----------~~~y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
|.+.|++++|.+.++++ +++.|++ +.+|..++.+|...|++++|..+++
T Consensus 295 ~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 295 CINLGAHREAVEHFLEA------------------LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHTCHHHHHHHHHHH------------------HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHCCCHHHHHHHHHHH------------------HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 99999999999999987 4555555 7899999999999999999998876
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=6.2e-13 Score=151.25 Aligned_cols=178 Identities=11% Similarity=0.106 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 046257 498 QGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR-DL-VSWNSMICGYAQHGHTKKALEVFKEMR 573 (838)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 573 (838)
.+..++...++.-.+.+..++..++..+.+.|++++|.++|+++. .| +. ..|..++..+.+.|+.++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555555555542233456777888888999999999999999875 34 43 589999999999999999999999998
Q ss_pred HcCCCCC-hhHHHHHHHH-HhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 046257 574 RQDLEFD-GITFIGVITA-CTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 574 ~~g~~pd-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~ 650 (838)
+. .|+ ...|...... +...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..++++.
T Consensus 384 ~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a------- 451 (530)
T 2ooe_A 384 ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV------- 451 (530)
T ss_dssp TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH-------
T ss_pred hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH-------
Confidence 84 444 2333333322 23589999999999988854 35 4577889999999999999999999986
Q ss_pred HHHHHHHHHHHhccCCCCch----hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 651 VWRTVLAACRLISLQPHDSA----IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 651 ~w~~ll~~c~~~~l~P~~~~----~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++..|.++. .+..........|+.+++.++.+.+.+.
T Consensus 452 -----------l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 452 -----------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -----------HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -----------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444454443 6666677788899999999999888753
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=6.3e-14 Score=156.97 Aligned_cols=361 Identities=12% Similarity=0.059 Sum_probs=230.5
Q ss_pred ChhHHHHHHHHHHcCCChHHHHHHHHhccc-----------CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcC---CC
Q 046257 314 DHNIRTGLMVAYSKCGKMEDASKIFSMMRE-----------MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREG---VR 379 (838)
Q Consensus 314 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~ 379 (838)
....||.|...|...|+.++|.+.|++..+ ....++|+.+...|...|++++|...|++..... ..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 345677777777777777777777765421 2345678889999999999999999998876421 01
Q ss_pred CCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHc--CCHHHHHHHHHhcCC--C-CcchHHHHHHH-
Q 046257 380 PNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKK--GILDEAAKVFELIDE--K-DIVAWSAMLAG- 453 (838)
Q Consensus 380 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~~~--~-~~~~~~~li~~- 453 (838)
|.... ...++..+..++.+. +++++|...|++..+ | +...+..+...
T Consensus 130 ~~~~~---------------------------~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 130 PYRIE---------------------------SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp SSCCC---------------------------CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ccchh---------------------------hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 10000 001122233334443 568999999997753 3 44455555544
Q ss_pred --HHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHh---cCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 046257 454 --YAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINAC---TAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSK 527 (838)
Q Consensus 454 --~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k 527 (838)
+...++.++|++.|++..+. .|+. ..+..+...+ ....+..+.+...+....... +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 34567889999999988763 4543 3333332222 222267778888888877765 4466778889999999
Q ss_pred cCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHHcCCCCC-hhHH
Q 046257 528 KGNIESASEVFKRQR---KRDLVSWNSMICGYAQH-------------------GHTKKALEVFKEMRRQDLEFD-GITF 584 (838)
Q Consensus 528 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~pd-~~t~ 584 (838)
.|++++|...|++.. +.+..+|..+...|... +..++|+..|++..+ ..|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhh
Confidence 999999999998875 44667788777766432 336788888998888 4555 4678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc----hHHHHHH-HHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHH
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME----HYSCMVD-LYSRAGMLEKAMDIINRM-PFAASATVWRTVLAA 658 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~lv~-~l~r~G~~~~A~~~~~~m-~~~~~~~~w~~ll~~ 658 (838)
..+...+...|++++|..+|+...+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+...+..
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~ 414 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 88999999999999999999998743 33322 2333333 345789999999999865 467777666655554
Q ss_pred HH-----HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEE
Q 046257 659 CR-----LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWI 709 (838)
Q Consensus 659 c~-----~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i 709 (838)
.. .++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 33 6788999999999999999999999999999999988776655556665
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=5.5e-14 Score=151.63 Aligned_cols=297 Identities=12% Similarity=0.092 Sum_probs=211.4
Q ss_pred HHhccCcHHHHHH-HHHHHHHhCC---CCChhHHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCC
Q 046257 289 LCATTKELRLARQ-LHSQVLKNGI---DFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGA 362 (838)
Q Consensus 289 ~~~~~~~~~~a~~-~~~~~~~~g~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~ 362 (838)
++...++++.|.. .+....+... ..+...+..+...|.+.|++++|...|+++.+ +.+...|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5556788888887 7776554432 11356688899999999999999999999875 3456778999999999999
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCC
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEK 442 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 442 (838)
+++|+..|+++.+.. | .+..++..+...|...|++++|.+.|+.+...
T Consensus 114 ~~~A~~~~~~al~~~--~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 114 ELLAISALRRCLELK--P------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHHHHHHHC--T------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC--C------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999987642 2 23457888999999999999999999987643
Q ss_pred C---cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCC-chhHH
Q 046257 443 D---IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNN-ALCVS 518 (838)
Q Consensus 443 ~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 518 (838)
+ ...+..+... ... ..+... +. .+..+... +..+.+...+..+++..... +..++
T Consensus 162 ~~~~~~~~~~~~~~-------~~~-----------~~~~~~-~~-~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 162 TPAYAHLVTPAEEG-------AGG-----------AGLGPS-KR-ILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp STTTGGGCC----------------------------------C-TTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred CcCcHHHHHHHHHH-------hhh-----------hcccHH-HH-HHHHHhhc-ccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 2 2222111000 000 000000 00 01111122 66666666666666554332 56777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHA 594 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 594 (838)
..+...|.+.|++++|...|+++. +.+..+|+.+...|...|++++|++.|+++.+. .|+ ..++..+..++...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 888899999999999999998875 456889999999999999999999999999984 565 56888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCccCC------------CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 595 GLVDEGQQYFDIMVNEHHIYPT------------MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p~------------~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|++++|..+|+.+.+. .|+ ...|..+..+|.+.|+.++|..+.++.
T Consensus 299 g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 299 GAHREAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TCHHHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999998743 333 367899999999999999999998754
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=4.2e-14 Score=152.52 Aligned_cols=258 Identities=12% Similarity=0.085 Sum_probs=208.0
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH
Q 046257 346 DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK 425 (838)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~ 425 (838)
+...|..+...+.+.|++++|+..|+++.... |+. ..++..+...|.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~------------------------------~~~~~~lg~~~~~ 111 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGD------------------------------AEAWQFLGITQAE 111 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC------------------------------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCC------------------------------HHHHHHHHHHHHH
Confidence 45568888899999999999999999988742 322 2233578888999
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhh-----------HHHHHHHhcC
Q 046257 426 KGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT-----------FSSVINACTA 491 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-----------~~~ll~a~~~ 491 (838)
.|++++|...|++..+ .+..+|..+...|.+.|++++|++.|+++.+. .|+... +..+...+..
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVD 189 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------C
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhh
Confidence 9999999999987753 45678999999999999999999999998773 333221 2223456666
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNN-ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
. +.++.+...+..+++..... +..++..+...|.+.|++++|.+.|++.. +.+..+|+.+...|...|++++|++
T Consensus 190 ~-g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 190 S-SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268 (365)
T ss_dssp C-HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7 99999999999998876442 67889999999999999999999999875 5578899999999999999999999
Q ss_pred HHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-------------CchHHHHHHHHHhcCCH
Q 046257 568 VFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-------------MEHYSCMVDLYSRAGML 633 (838)
Q Consensus 568 l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~y~~lv~~l~r~G~~ 633 (838)
.|+++.+ ..|+ ..++..+..++...|++++|..+|+.+.+. .|+ ...|..+...+...|+.
T Consensus 269 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 269 AYTRALE--IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL---QRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999 4565 678889999999999999999999998743 232 56789999999999999
Q ss_pred HHHHHHHhhC
Q 046257 634 EKAMDIINRM 643 (838)
Q Consensus 634 ~~A~~~~~~m 643 (838)
+.|.+..++-
T Consensus 344 ~~a~~~~~~~ 353 (365)
T 4eqf_A 344 ELFQAANLGD 353 (365)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
Confidence 9999998864
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=4.8e-16 Score=177.16 Aligned_cols=151 Identities=9% Similarity=0.132 Sum_probs=127.8
Q ss_pred CCCChhHHHHHHHHHHhCCChHHHHHHHccCC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhh
Q 046257 109 FARDVNVSTSLVDLYMRTNNVEDGRRVFDDMN-------ESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFT 181 (838)
Q Consensus 109 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 181 (838)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33445689999999999999999999997763 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCC-----CcchHHHHHHHH
Q 046257 182 FSTVLGVLADEGIV-ATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDR-----DSITWNSMVAGY 255 (838)
Q Consensus 182 ~~~ll~~~~~~g~~-~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~n~li~~~ 255 (838)
|+++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++..++++..+..+ .+.+.+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999974 789999999999999999999999998888876666666665555431 133344455666
Q ss_pred HhCC
Q 046257 256 VTNE 259 (838)
Q Consensus 256 ~~~g 259 (838)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6554
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=5.6e-14 Score=145.87 Aligned_cols=248 Identities=12% Similarity=0.084 Sum_probs=185.1
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 317 IRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 317 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
....+..+|...|+++.|...++... .++..++..+...+...|+.++|++.++++...+..|+..++.
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~-~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~---------- 104 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL---------- 104 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTS-CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccC-ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH----------
Confidence 33456678888888888887776644 5666778888888899999999999999998877777765543
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCC
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVK 476 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 476 (838)
..+...|...|++++|.+.|+. ..+...+..++..|.+.|++++|.+.|+++.+. .
T Consensus 105 --------------------~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 105 --------------------LMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp --------------------HHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred --------------------HHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 3466788899999999999998 457778999999999999999999999999874 3
Q ss_pred CCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 477 PNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 477 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
|+.... .+. .+++..+...|++++|..+|+++. +.+...|+.+.
T Consensus 161 p~~~~~-~l~--------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 161 EDATLT-QLA--------------------------------TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp TTCHHH-HHH--------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCcHHH-HHH--------------------------------HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 554211 111 122333445678888888888775 45778888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH-HHHHHHHHHhcCCccCCCchHHHHHHHHHhcC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE-GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG 631 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G 631 (838)
.+|.+.|++++|++.|++.++ ..|+ ..++..++..+...|+.++ +.++++++.+. .|+-. .+.+...+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~---~P~~~---~~~d~~~~~~ 279 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA---HRSHP---FIKEYRAKEN 279 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCH---HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---CCCCh---HHHHHHHHHH
Confidence 888888999999999988888 4565 5677788888888888765 56788877633 45433 2446677777
Q ss_pred CHHHHHHHH
Q 046257 632 MLEKAMDII 640 (838)
Q Consensus 632 ~~~~A~~~~ 640 (838)
.+++|..-|
T Consensus 280 ~fd~~~~~~ 288 (291)
T 3mkr_A 280 DFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777766544
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=5.9e-12 Score=141.58 Aligned_cols=332 Identities=13% Similarity=0.049 Sum_probs=200.6
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHc----CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChH
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLK----SKMVRDARAVFDGMED-RDSITWNSMVAGYVT----NELHM 262 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~----~g~~~ 262 (838)
.+++++|...+....+.| +...+..|...|.. .++.++|...|++..+ .+...+..+...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555543 33444455555555 5556666666554432 244455555555555 56677
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHH
Q 046257 263 EAFETFNNMGLAGAELTRSTFVSVIKLCAT----TKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDA 334 (838)
Q Consensus 263 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A 334 (838)
+|++.|++..+.| +...+..+-..+.. .++.+.|.+.+....+.| +...+..|..+|.. .++.++|
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 7777777666554 33444445555544 567777777777777664 46666777777776 7788888
Q ss_pred HHHHHhcccCCCeeehHHHHHHHHH----cCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhcc
Q 046257 335 SKIFSMMREMKDVVSWTAMISGHLQ----NGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYE 410 (838)
Q Consensus 335 ~~~f~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 410 (838)
.+.|++..+..+...+..+...|.. .+++++|..+|++..+.|.. ..
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a-------------------------- 257 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS---IA-------------------------- 257 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH---HH--------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH---HH--------------------------
Confidence 8888877655666677777777776 77888888888887765321 11
Q ss_pred CCcchhhHHHHHHHH----cCCHHHHHHHHHhcCC-CCcchHHHHHHHHHhc-----CCchHHHHHHHHhhcCCCCCCHh
Q 046257 411 KSFSVGTALLNAYVK----KGILDEAAKVFELIDE-KDIVAWSAMLAGYAQI-----GDTEGAVKIYRQLTSEGVKPNEF 480 (838)
Q Consensus 411 ~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ 480 (838)
...|..+|.. .++.++|.+.|+...+ .+...+..+...|... +++++|+..|++..+.|. ..
T Consensus 258 -----~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~ 329 (490)
T 2xm6_A 258 -----QFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---AT 329 (490)
T ss_dssp -----HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HH
T ss_pred -----HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HH
Confidence 1235555666 7888888888887654 3556777777888776 788889988888876542 11
Q ss_pred hHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 046257 481 TFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKG---NIESASEVFKRQR-KRDLVSWNSMICGY 556 (838)
Q Consensus 481 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~-~~~~~~~~~li~~~ 556 (838)
.+. .|..+|.+.| +.++|.+.|++.. ..+...|..|...|
T Consensus 330 a~~------------------------------------~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y 373 (490)
T 2xm6_A 330 AQA------------------------------------NLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNAL 373 (490)
T ss_dssp HHH------------------------------------HHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHH------------------------------------HHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 221 1222233323 4555555555443 23455555555555
Q ss_pred HH----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 046257 557 AQ----HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMV 608 (838)
Q Consensus 557 ~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 608 (838)
.. .++.++|++.|++..+.| +...+..+...+.+ .++.++|..+|+...
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 55 556666666666665543 33444445555544 556666666666555
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=3.4e-12 Score=145.13 Aligned_cols=302 Identities=11% Similarity=0.091 Sum_probs=163.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 046257 143 NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALIS 222 (838)
Q Consensus 143 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~ 222 (838)
|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+.+.|+.+|+.+++.. |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5567888887 467888888888888887642 2345567777777778888888888888887764 46666666664
Q ss_pred H-hHcCCChhHHHH----HHhcCC------CCCcchHHHHHHHHHh---------CCChHHHHHHHHHhhhCCCCCCh--
Q 046257 223 M-YLKSKMVRDARA----VFDGME------DRDSITWNSMVAGYVT---------NELHMEAFETFNNMGLAGAELTR-- 280 (838)
Q Consensus 223 ~-y~~~g~~~~A~~----~f~~m~------~~~~~~~n~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~-- 280 (838)
. ....|+.+.|++ +|+... ..+...|...+....+ .|++++|..+|++.... |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 2 234566666554 554321 1244566666655443 45666677777666652 221
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhc-------cc-----CCC-
Q 046257 281 -STFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMM-------RE-----MKD- 346 (838)
Q Consensus 281 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~-------~~-----~~~- 346 (838)
..|..........+. ..+ ..++. .+.++++.|..++... .. .|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 111111110000000 000 01110 1223455555554431 10 111
Q ss_pred -------eeehHHHHHHHHHc----CCh----HHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccC
Q 046257 347 -------VVSWTAMISGHLQN----GAI----DLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEK 411 (838)
Q Consensus 347 -------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 411 (838)
...|...+.....+ ++. +.+..+|++.... .| .
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p------------------------------~ 270 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LG------------------------------H 270 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HT------------------------------T
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CC------------------------------C
Confidence 12344433222221 111 2455555555442 12 2
Q ss_pred CcchhhHHHHHHHH-------cCCHH-------HHHHHHHhcCC---C-CcchHHHHHHHHHhcCCchHHHHHHHHhhcC
Q 046257 412 SFSVGTALLNAYVK-------KGILD-------EAAKVFELIDE---K-DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSE 473 (838)
Q Consensus 412 ~~~~~~~Li~~y~~-------~g~~~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 473 (838)
+..+|..+...+.+ .|+++ +|..+|++..+ | +...|..++..+.+.|++++|.++|+++.+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~- 349 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA- 349 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-
Confidence 23344455555554 68876 88999987764 2 466888899999999999999999998887
Q ss_pred CCCCCH--hhHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 046257 474 GVKPNE--FTFSSVINACTAPSAAVEQGKQFHACSIK 508 (838)
Q Consensus 474 g~~p~~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 508 (838)
+.|+. ..|.......... +.++.++.++...++
T Consensus 350 -~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 350 -IEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKKARE 384 (530)
T ss_dssp -SSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHT
T ss_pred -ccccCchHHHHHHHHHHHHh-cCHHHHHHHHHHHHh
Confidence 34542 2343333333223 444444444444443
No 33
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=6.8e-14 Score=150.87 Aligned_cols=255 Identities=11% Similarity=0.022 Sum_probs=204.7
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
.+..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 345678889999999999999998764 467789999999999999999999999998742 2346777777788888
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC---------chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CC--CHHHHHHHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNN---------ALCVSSALVTMYSKKGNIESASEVFKRQR---KR--DLVSWNSMICGYA 557 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~--~~~~~~~li~~~~ 557 (838)
. +.++.+...+..+++..... ...++..+...|.+.|++++|.+.|+++. +. +..+|..+...|.
T Consensus 146 ~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 T-SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp T-TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 8 99999999999988754221 12233446888999999999999999876 33 6889999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHH
Q 046257 558 QHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 558 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~ 635 (838)
..|++++|++.|+++.+. .|+ ..++..+..++...|++++|..+|+.+.+. .|+ ...+..+..+|.+.|++++
T Consensus 225 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999984 554 678999999999999999999999999854 454 6678899999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC------------CchhHHHHHHHHHhcCCchHHHHHHHH
Q 046257 636 AMDIINRMPFAASATVWRTVLAACRLISLQPH------------DSAIYVLLSNMYAATGHWQERARVRKL 694 (838)
Q Consensus 636 A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~------------~~~~y~~l~~~y~~~g~~~~a~~~~~~ 694 (838)
|.+.++++ +++.|+ +...+..|+.+|...|+.+.+.++.+.
T Consensus 300 A~~~~~~a------------------l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTA------------------LSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHH------------------HHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHH------------------HHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999987 444443 477899999999999999998876553
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.53 E-value=1.2e-12 Score=138.17 Aligned_cols=257 Identities=12% Similarity=0.070 Sum_probs=206.3
Q ss_pred CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH
Q 046257 346 DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK 425 (838)
Q Consensus 346 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~ 425 (838)
+...|..+...+...|++++|+.+|+++.+.. |+.. .++..+...|.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~------------------------------~~~~~l~~~~~~ 67 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PERE------------------------------EAWRSLGLTQAE 67 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH------------------------------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCH------------------------------HHHHHHHHHHHH
Confidence 44556777888889999999999999887742 3221 223457778899
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHH--------------HH
Q 046257 426 KGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVI--------------NA 488 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--------------~a 488 (838)
.|++++|.+.|+.+.+ .+...|..+...|...|++++|++.|+++... .|+.......+ ..
T Consensus 68 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------
T ss_pred cCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999999999987754 35678889999999999999999999998874 34433332222 33
Q ss_pred --hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChH
Q 046257 489 --CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTK 563 (838)
Q Consensus 489 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 563 (838)
+... +..+.+...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|+++
T Consensus 146 ~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 146 FFFAAP-NEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CCTTSH-HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHc-ccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 4445 89999999999988765 3467888999999999999999999999775 456889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-------------CchHHHHHHHHHh
Q 046257 564 KALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-------------MEHYSCMVDLYSR 629 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------~~~y~~lv~~l~r 629 (838)
+|++.|+++.+. .|+ ..++..+..++...|++++|.++|+.+.+. .|+ ...|..+..+|.+
T Consensus 224 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 224 EALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHh
Confidence 999999999984 454 678888999999999999999999998743 344 5678889999999
Q ss_pred cCCHHHHHHHHhhC
Q 046257 630 AGMLEKAMDIINRM 643 (838)
Q Consensus 630 ~G~~~~A~~~~~~m 643 (838)
.|+.++|.+++++.
T Consensus 299 ~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 299 MNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999876
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.53 E-value=3.4e-13 Score=142.54 Aligned_cols=255 Identities=11% Similarity=0.023 Sum_probs=208.8
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcC
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTA 491 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 491 (838)
.+..+...+...|++++|...|+++.+ .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 334677888999999999999998753 366788999999999999999999999998752 2355667777777777
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSAL--------------VT-MYSKKGNIESASEVFKRQR---KRDLVSWNSMI 553 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 553 (838)
. +..+.+...+..+.+.... +...+..+ .. .|...|++++|.+.++++. +.+...|..+.
T Consensus 102 ~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 102 E-HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp T-TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 7 9999999999998876433 22333333 22 3788899999999998875 45788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcC
Q 046257 554 CGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAG 631 (838)
Q Consensus 554 ~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G 631 (838)
..|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .| +...+..+..+|.+.|
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999984 454 678889999999999999999999998754 34 4567888999999999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC------------CchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH------------DSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~------------~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++++|.+.++++ +++.|+ ++..+..++.+|...|++++|..+++..
T Consensus 255 ~~~~A~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRA------------------IYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHH------------------HHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHH------------------HHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999987 566777 6889999999999999999999887643
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=9.2e-12 Score=139.25 Aligned_cols=202 Identities=15% Similarity=0.060 Sum_probs=111.4
Q ss_pred cCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHH-HhcC----------
Q 046257 426 KGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVIN-ACTA---------- 491 (838)
Q Consensus 426 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~---------- 491 (838)
.|++++|.+.+++... .+...|..+...|.+.|++++|++.|++..+. .|+......-+. .+..
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455566666654432 24445666666666666666666666666542 344322211111 1100
Q ss_pred --------ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHH----HHHHHHH-HH
Q 046257 492 --------PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLV----SWNSMIC-GY 556 (838)
Q Consensus 492 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~----~~~~li~-~~ 556 (838)
.....+.+...+..+.... +.+...+..+...|.+.|++++|.+.|++.. .++.. .+..+.. .+
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 0023445555555555543 3345667778888999999999999998764 33322 2233332 23
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A 636 (838)
.+.|+.++|++.|++.++ +.|+.......+ +.+.++++...+.. +.+...|..+..+|...|++++|
T Consensus 383 ~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~---------~~l~~~~~~~l~~~--p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVK--INQKSREKEKMK---------DKLQKIAKMRLSKN--GADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HTSSCHHHHHHHHHHHHH--SCCCCHHHHHHH---------HHHHHHHHHHHHHC--C-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHCCCHHHHHHHHHHHHh--cCcccHHHHHHH---------HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 467889999999999888 677754333222 33445555554332 23567899999999999999999
Q ss_pred HHHHhhC
Q 046257 637 MDIINRM 643 (838)
Q Consensus 637 ~~~~~~m 643 (838)
.+.+++.
T Consensus 450 ~~~y~kA 456 (472)
T 4g1t_A 450 DEDSERG 456 (472)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9999987
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1.6e-12 Score=128.60 Aligned_cols=194 Identities=19% Similarity=0.181 Sum_probs=149.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
+...|..+...+.+.|++++|+..|++..+. .|+. ...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~-----------------------------------~~a~~~lg 46 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQD-----------------------------------PEALYWLA 46 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSC-----------------------------------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-----------------------------------HHHHHHHH
Confidence 4556777788888888888888888887753 3433 23334455
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQH-----------GHTKKALEVFKEMRRQDLEFD-GITFIGV 587 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd-~~t~~~l 587 (838)
..|.+.|++++|...|++.. +.+...|..+...|... |++++|++.|++..+ +.|+ ...+..+
T Consensus 47 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~l 124 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQR 124 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 56778899999999888765 45678889999999999 999999999999999 5676 5678888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
..++...|++++|...|+...+.. .+...+..+..+|...|++++|.+.+++. ++++|+
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------l~~~P~ 183 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKA------------------LEQAPK 183 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHSTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCC
Confidence 889999999999999999998543 66778889999999999999999999987 788999
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
++..+..++.+|...|++++|...+++..
T Consensus 184 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 184 DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHTC---------------
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999998887653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.8e-12 Score=128.47 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=169.2
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCC--CCCCHhhHHHHHHHhc
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDE--KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEG--VKPNEFTFSSVINACT 490 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~ 490 (838)
.+..+...|...|++++|...|+...+ .+...|..+...|...|++++|++.|++..+.. ..|+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK---------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH----------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH----------
Confidence 445566667777777777777765432 455566777777777777777777776655421 000100
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHH
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEV 568 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 568 (838)
....++..+...|.+.|++++|.+.|++.. .++. ..+...|++++|++.
T Consensus 77 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 ----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHH
Confidence 013556667788999999999999998876 4442 456677889999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046257 569 FKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAA 647 (838)
Q Consensus 569 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~ 647 (838)
++++.. ..|+ ...+..+...+...|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|.+.++++
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---- 199 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKA---- 199 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH----
Confidence 999998 5565 4567888889999999999999999988543 224567888999999999999999999987
Q ss_pred CHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 648 SATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..|..++.+|...|++++|...+++..+
T Consensus 200 --------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 200 --------------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp --------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788999999999999999999999999999998865
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=8.3e-12 Score=128.08 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=192.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH--hhHHHHHHHhcC
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE--FTFSSVINACTA 491 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 491 (838)
......+.+.|++++|...|+...+ .+...|..+...|.+.|++++|++.|++....+-.|+. ..+..+-..+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3566778899999999999998754 35568999999999999999999999999884322222 236666666777
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEV 568 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 568 (838)
. +..+.+...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.. +.+...|..+...+...+++++|++.
T Consensus 87 ~-~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 K-GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp T-TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 99999999999998865 3456788999999999999999999999887 34677888888344445699999999
Q ss_pred HHHHHHcCCCCC-hhHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccCCC------chHHHHHHHHHhcCCHHHHHH
Q 046257 569 FKEMRRQDLEFD-GITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYPTM------EHYSCMVDLYSRAGMLEKAMD 638 (838)
Q Consensus 569 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~------~~y~~lv~~l~r~G~~~~A~~ 638 (838)
|+++.+ ..|+ ...+..+..++...|. .++|...++...+...-.|+. ..|..+...|.+.|++++|.+
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999 5666 4667777788888888 888999998887554333543 467888999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 639 IINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
.++++ ++++|+|+.+...+..+....+.
T Consensus 243 ~~~~a------------------l~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 243 AWKNI------------------LALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHH------------------HHHCTTCHHHHHHHC--------
T ss_pred HHHHH------------------HhcCccHHHHHHHhhhhhccccc
Confidence 99987 78999999888888777665544
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.7e-11 Score=124.28 Aligned_cols=212 Identities=12% Similarity=0.086 Sum_probs=150.1
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCC
Q 046257 349 SWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGI 428 (838)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~ 428 (838)
.|..+...+...|++++|+..|++..+.. .+...+ ..+...|...|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~-------------------------------~~~~~~~~~~~~ 53 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYL-------------------------------NNRAAAEYEKGE 53 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHH-------------------------------HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHH-------------------------------HHHHHHHHHccc
Confidence 34555566666677777777776666543 222222 345666777777
Q ss_pred HHHHHHHHHhcCCC---C-------cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHH
Q 046257 429 LDEAAKVFELIDEK---D-------IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQ 498 (838)
Q Consensus 429 ~~~A~~~f~~~~~~---~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 498 (838)
+++|.+.|+...+. + ...|..+...|.+.|++++|++.|++.... .|+.
T Consensus 54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------- 112 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------- 112 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------------------
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------------------
Confidence 77777777665431 1 467888899999999999999999988763 3332
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 499 GKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
+.+.+.|++++|.+.++++. +.+...|..+...|...|++++|++.|++..+.
T Consensus 113 ------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 113 ------------------------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 12445566677777776654 224566778888888888888888888888874
Q ss_pred CCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 576 DLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 576 g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.| +..++..+..++...|++++|..+|+...+. .| +...|..+...|.+.|++++|.+.+++.
T Consensus 169 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 169 --APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34 4567778888888888888888888888743 34 3566778888888999999999888876
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=5.9e-11 Score=120.15 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=160.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 046257 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVT 523 (838)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 523 (838)
...|..+...|...|++++|++.|+++.+. .|+ +...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------------------------------~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS-----------------------------------SADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC-----------------------------------hHHHHHHHHH
Confidence 456788888999999999999999988763 222 2234445666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
.|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+..++...|++++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 7888899999999988765 44778888899999999999999999999887445565 4567778888899999999
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
|.++|+.+.+.. +.+...+..++.+|.+.|++++|.+.++++ ++..|++...+..++.+|
T Consensus 160 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 160 AKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLF------------------AQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCcCcHHHHHHHHHHH
Confidence 999999887442 124567888889999999999999999887 677888889999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 046257 680 AATGHWQERARVRKLMNDR 698 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~ 698 (838)
...|++++|.+.++.+.+.
T Consensus 220 ~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.32 E-value=8.1e-10 Score=122.27 Aligned_cols=219 Identities=12% Similarity=0.152 Sum_probs=146.5
Q ss_pred hhHHHHHHHHcC----CHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 416 GTALLNAYVKKG----ILDEAAKVFELIDEKDIVAWSAMLAGYAQIG---DTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 416 ~~~Li~~y~~~g----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
...|...|...+ ..+++..++......+...+..|...|.+.| +.++|++.|++..+.|. ++..
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~-------- 214 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQ-------- 214 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHH--------
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHH--------
Confidence 344555666655 3444555555555556667777777777777 67777777777666542 2222
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCCHHHHHHHHHH-H--HHcCC
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK----GNIESASEVFKRQRKRDLVSWNSMICG-Y--AQHGH 561 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~ 561 (838)
.+..|..+|... +++++|.+.|++..+.+...+..|... | ...|+
T Consensus 215 ----------------------------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 215 ----------------------------RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp ----------------------------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCC
T ss_pred ----------------------------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Confidence 112233334332 688888888887764466777777776 4 45788
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC-----CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cCC
Q 046257 562 TKKALEVFKEMRRQDLEFDGITFIGVITACTHAG-----LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AGM 632 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G~ 632 (838)
.++|++.|++..+.| +......|...|. .| +.++|.++|+... .-++..+..|..+|.. ..+
T Consensus 267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcC
Confidence 999999999988876 5556666666665 45 8899999988664 2345566667777766 338
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA----TGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 700 (838)
+++|.+.+++. .++.++.++..|+.+|.. ..+.++|..++++..+.|.
T Consensus 338 ~~~A~~~~~~A--------------------a~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 338 PQKALDHLLTA--------------------ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHH--------------------HTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHH--------------------HhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88999998865 235577788888888874 4578888888888877664
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=1.3e-10 Score=114.94 Aligned_cols=197 Identities=12% Similarity=0.019 Sum_probs=155.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
+...|..+...|...|++++|++.|+++.+. .|+ +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------------------~~~~~~~l~ 49 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK-----------------------------------NELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------------------------------CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc-----------------------------------chHHHHHHH
Confidence 3456777888888888899998888887653 222 122344556
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQH-GHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
..|...|++++|.+.|++.. +.+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+..++...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 66788888889888888765 45677888888999999 999999999999888434454 45677888888899999
Q ss_pred HHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC-CCchhHHHH
Q 046257 598 DEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQP-HDSAIYVLL 675 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P-~~~~~y~~l 675 (838)
++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ++..| +++..+..+
T Consensus 130 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~ 188 (225)
T 2vq2_A 130 GLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKY------------------QSRVEVLQADDLLLG 188 (225)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCCHHHHHHH
Confidence 9999999888743 34 3567788888999999999999999876 67778 888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHhh
Q 046257 676 SNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 676 ~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.+|...|+.++|..+++.+.+
T Consensus 189 ~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 189 WKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999998888865
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.30 E-value=5e-11 Score=122.32 Aligned_cols=239 Identities=9% Similarity=-0.072 Sum_probs=180.5
Q ss_pred HcCCHHHHHHHHHhcCCC-------CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHH
Q 046257 425 KKGILDEAAKVFELIDEK-------DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVE 497 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 497 (838)
..|++++|...|+.+.+. +...|..+...|...|++++|++.|+++.+.. +.+..++..+...+... +.++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQA-GNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHc-cCHH
Confidence 457788888888877652 34578888888889999999999998887742 22456666676777777 8888
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 046257 498 QGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ 575 (838)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 575 (838)
.+...+..+++.. +.+...+..+...|.+.|++++|.+.|+++. .|+...+...+..+...|++++|+..|++....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888888888764 3357788889999999999999999999876 444444444555557779999999999988885
Q ss_pred CCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHH
Q 046257 576 DLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASAT 650 (838)
Q Consensus 576 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~ 650 (838)
. .++...+ .++..+...+..++|...++...+ ..|+ ...+..+...|.+.|++++|.+.++++
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------- 241 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA------- 241 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH-------
Confidence 2 3344444 477777888889999999988762 2332 467888999999999999999999987
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 046257 651 VWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVR 692 (838)
Q Consensus 651 ~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~ 692 (838)
++++|++...+ +.++...|++++|.+.+
T Consensus 242 -----------l~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 -----------VANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp -----------HTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred -----------HhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 67788776554 56788889999887754
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=6.6e-11 Score=118.85 Aligned_cols=211 Identities=14% Similarity=0.140 Sum_probs=144.0
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhc
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACT 490 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 490 (838)
..+..+...+...|++++|...|+++.+ .+...|..+...|.+.|++++|++.|+++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------------------ 85 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE------------------ 85 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 3344455555666666666666665532 2344555556666666666666666655543
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHH
Q 046257 491 APSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALE 567 (838)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 567 (838)
.. +.+...+..+...|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++
T Consensus 86 ------------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 86 ------------------LD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp ------------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ------------------cC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 21 2234556667778899999999999998765 5578889999999999999999999
Q ss_pred HHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 568 VFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 568 l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
.|+++.+. .| +...+..+...+...|++++|..+|+.+.+.. +.+...+..+..+|.+.|++++|.+.++++
T Consensus 147 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~--- 219 (243)
T 2q7f_A 147 YLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKA--- 219 (243)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH---
T ss_pred HHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHH---
Confidence 99999984 44 46678888889999999999999999987542 234567888999999999999999999987
Q ss_pred CCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 647 ASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 647 ~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
++++|+++..+..++.+....|
T Consensus 220 ---------------~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 ---------------IDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp ---------------HHHCTTCHHHHHHHTC------
T ss_pred ---------------HccCcchHHHHHHHHHHHhhcc
Confidence 7888988888887776655544
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=1.6e-10 Score=110.70 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=143.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
+..+|..|...|.+.|++++|.+.|++.. +.+..+|..+...|.+.|++++|++.+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788889999999999999999999875 557889999999999999999999999999884 555 456777778
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
.+...++++++...+....+. .| +...+..+..+|.+.|++++|++.+++. ++++|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~------------------l~~~p~~ 140 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKT------------------ISIKPGF 140 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHH------------------HHhcchh
Confidence 889999999999999998743 34 4567888999999999999999999987 7899999
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+.+|..++.+|...|++++|.+.+++..+.
T Consensus 141 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 141 IRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999988653
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.26 E-value=6.3e-10 Score=123.17 Aligned_cols=336 Identities=13% Similarity=0.063 Sum_probs=191.6
Q ss_pred cCCChhhHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh---HHHHHHHccCCCCCcchHHHHHHHHHhCC-----Cch
Q 046257 90 CLFDHVFGRQVHCECVKSGFARDVNVSTSLVDLYMRTNNV---EDGRRVFDDMNESNVVSWTSLLSGYARNK-----MND 161 (838)
Q Consensus 90 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~ 161 (838)
+.|++++|.+++....+.| ++..+..|-.+|...|+. ++|...|+...+.++..+..|...+...| +++
T Consensus 15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 3445555555555544443 122233333444445555 66666666655555555666655444444 556
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCC----hhHHH
Q 046257 162 RVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIV---ATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKM----VRDAR 234 (838)
Q Consensus 162 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~----~~~A~ 234 (838)
+|+..|++..+.|.. ..+..|...+...+.. ..+.+.+....+.| +......|...|...+. .+.|.
T Consensus 92 ~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 777777777665532 2444455554433322 23444444444444 24455666677776663 44455
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhcc----CcHHHHHHHHHHHH
Q 046257 235 AVFDGMEDRDSITWNSMVAGYVTNE---LHMEAFETFNNMGLAGAELTRSTFVSVIKLCATT----KELRLARQLHSQVL 307 (838)
Q Consensus 235 ~~f~~m~~~~~~~~n~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~ 307 (838)
.++......+...+..+...|...| +.++|++.|++..+.| .++...+..+-..+... ++.++|...++...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 5666666667778888888888888 8888888888887776 33344334444555443 68888888888876
Q ss_pred HhCCCCChhHHHHHHHH-H--HcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcC-----ChHHHHHHHHHhhhcCCC
Q 046257 308 KNGIDFDHNIRTGLMVA-Y--SKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNG-----AIDLAVNFFCQMTREGVR 379 (838)
Q Consensus 308 ~~g~~~~~~~~~~Li~~-y--~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~ 379 (838)
+-+...+..|..+ | ...++.++|.+.|++..+..+...+..|...|. .| ++++|+..|++.. .|
T Consensus 245 ----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-- 316 (452)
T 3e4b_A 245 ----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-- 316 (452)
T ss_dssp ----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT--
T ss_pred ----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC--
Confidence 3355666666666 4 467888888888888765566777777777776 55 7888888888776 22
Q ss_pred CCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHH----cCCHHHHHHHHHhcCCC-CcchHHHHHHHH
Q 046257 380 PNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVK----KGILDEAAKVFELIDEK-DIVAWSAMLAGY 454 (838)
Q Consensus 380 pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~ 454 (838)
+... ...|..+|.. ..++++|.+.|....+. +......|...|
T Consensus 317 -~~~A-------------------------------~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 317 -EVAA-------------------------------DYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp -CHHH-------------------------------HHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred -CHHH-------------------------------HHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 1111 1234445544 33788888888766543 556666666666
Q ss_pred Hh----cCCchHHHHHHHHhhcCCC
Q 046257 455 AQ----IGDTEGAVKIYRQLTSEGV 475 (838)
Q Consensus 455 ~~----~g~~~~A~~l~~~m~~~g~ 475 (838)
.. ..+.++|..+|+...+.|.
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 3477888888888877663
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=1.2e-09 Score=112.18 Aligned_cols=221 Identities=14% Similarity=0.035 Sum_probs=166.3
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhcCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELIDEK-DIVAWSAMLAGYAQ----IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
..+..+...|...|++++|.+.|+...++ +...+..+...|.. .+++++|++.|++..+.+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------------- 72 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------------- 72 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------------
Confidence 34455666666667777777766655443 34456666666666 666666666666655432
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----c
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSK----KGNIESASEVFKRQR-KRDLVSWNSMICGYAQ----H 559 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~ 559 (838)
+...+..+..+|.. .|++++|.+.|++.. ..+...+..+...|.. .
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSC
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcc
Confidence 33344455666777 899999999998775 4477889999999999 9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cC
Q 046257 560 GHTKKALEVFKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AG 631 (838)
Q Consensus 560 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G 631 (838)
|++++|++.|++..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.+ .|
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999865 55667777777777 89999999999998743 245667788899999 99
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA----TGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 700 (838)
++++|.+.+++. ++.+| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a------------------~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKA------------------CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHH------------------HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHH------------------HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 999999999876 44444 7788899999999 9999999999998877653
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.23 E-value=1.6e-10 Score=114.16 Aligned_cols=195 Identities=13% Similarity=-0.040 Sum_probs=144.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHH
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVD 121 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 121 (838)
+...|..+...+.+.|++++|+..|++..+.. |.+...+..+...+.+.|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 55677888888999999999999999988754 4566778888888889999999999999988876 346677888888
Q ss_pred HHHhC-----------CChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHH
Q 046257 122 LYMRT-----------NNVEDGRRVFDDMNE--S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLG 187 (838)
Q Consensus 122 ~y~~~-----------g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 187 (838)
.|.+. |++++|...|+...+ | +...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 88888 888888888877653 3 45678888888888888888888888887766 67777888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCC
Q 046257 188 VLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGME 241 (838)
Q Consensus 188 ~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 241 (838)
++...|++++|...++.+++.. +.+..++..+...+.+.|+.++|...|++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888775 4566777777778888888888877776543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.23 E-value=2.1e-10 Score=115.18 Aligned_cols=198 Identities=14% Similarity=0.117 Sum_probs=149.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
....|..+...+.+.|++++|+..|+++.+. .|+ +...+..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~-----------------------------------~~~~~~~la 64 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE-----------------------------------DAIPYINFA 64 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT-----------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc-----------------------------------cHHHHHHHH
Confidence 4567788888888899999999999888763 232 223444566
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDE 599 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 599 (838)
..|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 65 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 65 NLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 67889999999999998765 4578899999999999999999999999999853 2346678888899999999999
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
|..+++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ++..|+++..+..++.+|
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAV------------------TEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHH
Confidence 999999988542 234567888999999999999999999987 678899999999999999
Q ss_pred HhcCCchHHHHHHHHHhhC
Q 046257 680 AATGHWQERARVRKLMNDR 698 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~ 698 (838)
...|++++|.+.++++.+.
T Consensus 204 ~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 204 AYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTTCTTHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHcc
Confidence 9999999999999998763
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=2.2e-10 Score=117.41 Aligned_cols=222 Identities=11% Similarity=-0.009 Sum_probs=174.5
Q ss_pred hcCCchHHHHHHHHhhcCCCC--C-CHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 046257 456 QIGDTEGAVKIYRQLTSEGVK--P-NEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIE 532 (838)
Q Consensus 456 ~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 532 (838)
..|++++|++.|+++.+.... | +..++..+...+... +..+.+...+..+++.. +.+...+..+...|.+.|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 457899999999999876321 2 345566666677777 99999999999988875 346788899999999999999
Q ss_pred HHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 533 SASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 533 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
+|.+.|++.. +.+...|..+...|...|++++|++.|+++.+ ..|+.......+..+...|++++|..+++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999999876 45788999999999999999999999999998 567766555566666778999999999988774
Q ss_pred cCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 610 EHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 610 ~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
.. +++... ..++..+...++.++|.+.+++.- ..+ .+..|.++..+..++.+|...|++++|.
T Consensus 173 ~~--~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~-~~~-------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 173 KS--DKEQWG-WNIVEFYLGNISEQTLMERLKADA-TDN-------------TSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HS--CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHC-CSH-------------HHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cC--CcchHH-HHHHHHHHHhcCHHHHHHHHHHHh-ccc-------------ccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 42 233344 447778888889999999998762 111 0112234678899999999999999999
Q ss_pred HHHHHHhhC
Q 046257 690 RVRKLMNDR 698 (838)
Q Consensus 690 ~~~~~m~~~ 698 (838)
..+++..+.
T Consensus 236 ~~~~~al~~ 244 (275)
T 1xnf_A 236 ALFKLAVAN 244 (275)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 999999764
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.22 E-value=2.9e-10 Score=114.94 Aligned_cols=204 Identities=11% Similarity=0.028 Sum_probs=122.1
Q ss_pred HhhccCCCCC--cccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCC
Q 046257 33 SLFDRSPQRN--FVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFA 110 (838)
Q Consensus 33 ~~f~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 110 (838)
..|..-..|+ ...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+++...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~- 102 (252)
T 2ho1_A 25 NPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS- 102 (252)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred CccccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-
Confidence 3344444443 5678888888999999999999999988764 34555666677777777777777777777766542
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHccCCC----C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHH
Q 046257 111 RDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE----S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTV 185 (838)
Q Consensus 111 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 185 (838)
.+..++..+...|...|++++|.+.|+.+.. | +...|..+...|.+.|++++|...|++..+
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------------- 169 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR------------- 169 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------
Confidence 3455566666666666666666666655443 1 223455555555555555555555555544
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChH
Q 046257 186 LGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHM 262 (838)
Q Consensus 186 l~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~ 262 (838)
.. +.+..++..+...|.+.|++++|...|+...+ .+...|..+...+...|+++
T Consensus 170 ----------------------~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (252)
T 2ho1_A 170 ----------------------LN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRD 226 (252)
T ss_dssp ----------------------HC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------cC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHH
Confidence 32 22344445555555555555555555554332 23445566666666777777
Q ss_pred HHHHHHHHhhhC
Q 046257 263 EAFETFNNMGLA 274 (838)
Q Consensus 263 ~A~~l~~~m~~~ 274 (838)
+|.+.++++.+.
T Consensus 227 ~A~~~~~~~~~~ 238 (252)
T 2ho1_A 227 TAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=1.9e-10 Score=125.45 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=116.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~ 581 (838)
.++..+...|...|++++|.+.|++.. .++ ..+|..+...|...|++++|+..|++..+.... ++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 355667788999999999999988765 222 247888999999999999999999998763111 11 3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
.++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++.- .
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------~ 335 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL------------E 335 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------H
Confidence 56778888999999999999999987643211112 3467788999999999999999998751 0
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
-+.-....|....++..++.+|...|+...
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 336 ISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 000111123345677888888888887643
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.21 E-value=3.2e-10 Score=116.09 Aligned_cols=231 Identities=9% Similarity=-0.003 Sum_probs=178.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCc--hhHHHHH
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNA--LCVSSAL 521 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 521 (838)
..+......+.+.|++++|+..|++..+. .|+. ..+..+...+... +..+.+...+..+++....++ ...+..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556778889999999999999999874 4444 3666666677777 999999999999988442222 2337889
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLV 597 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~ 597 (838)
...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+. .++..+...+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999775 45678999999999999999999999999988 46664 4566666355556799
Q ss_pred HHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC-----
Q 046257 598 DEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD----- 668 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~----- 668 (838)
++|.+.|+.+.+. .|+ ...+..+..++...|+ +++|...++++- .+.+-.|+.
T Consensus 159 ~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~---------------~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 159 VKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI---------------EVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH---------------HHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH---------------HHHhcccccchHHH
Confidence 9999999999854 454 4567778888888888 777888877651 011112321
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
...|..++.+|...|++++|.+.+++..+.
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 257888999999999999999999998763
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.19 E-value=6.6e-10 Score=119.22 Aligned_cols=242 Identities=8% Similarity=0.097 Sum_probs=167.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcCChhh-HHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNE-FTFSSVINACTAPSAA-VEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 447 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
|+.+...+.+.|++++|++.|++... +.|+. ..|..+-..+... +. ++.+...+..+++.. +.+...+..+..+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~-g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSL-QKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 33444444444444444444444443 22322 2222222223333 32 444444444444433 2245566667777
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc-cCCHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH-AGLVDE 599 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~-~g~~~~ 599 (838)
|.+.|++++|...|+++. +.+...|..+...+...|++++|++.|+++++ +.|+ ...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 889999999999999876 56889999999999999999999999999999 5675 5678888888888 666577
Q ss_pred H-----HHHHHHHHhcCCccCC-CchHHHHHHHHHhcC--CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 600 G-----QQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAG--MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 600 a-----~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G--~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
| ..+|+..++ +.|+ ...|..+..+|.+.| ++++|.++++++ +.+|+++.+
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-------------------~~~p~~~~a 311 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-------------------QPSHSSPYL 311 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-------------------TTTCCCHHH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-------------------ccCCCCHHH
Confidence 7 588888774 4564 457888888898888 688998888764 457889999
Q ss_pred HHHHHHHHHhcC---------CchHHHHHHHHH-hhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHH
Q 046257 672 YVLLSNMYAATG---------HWQERARVRKLM-NDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTR 741 (838)
Q Consensus 672 y~~l~~~y~~~g---------~~~~a~~~~~~m-~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~ 741 (838)
+..|+.+|...| ..++|.++++++ .+ ..|...+.|..+......
T Consensus 312 l~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--------------------------~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 312 IAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--------------------------KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--------------------------TCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--------------------------hCchhHHHHHHHHHHHHH
Confidence 999999999985 258999999998 44 246667777766665554
Q ss_pred H
Q 046257 742 L 742 (838)
Q Consensus 742 ~ 742 (838)
+
T Consensus 366 ~ 366 (382)
T 2h6f_A 366 K 366 (382)
T ss_dssp H
T ss_pred H
Confidence 4
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=1.6e-10 Score=134.04 Aligned_cols=161 Identities=16% Similarity=0.234 Sum_probs=145.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
+...++.|...|.+.|++++|++.|++.. +.+...|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678889999999999999999999875 45688999999999999999999999999999 6787 568999999
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
++...|++++|.+.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++. ++++|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~A------------------l~l~P~~ 144 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTA------------------LKLKPDF 144 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCSCC
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCC
Confidence 99999999999999999884 3564 568899999999999999999999987 8999999
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 669 SAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+.+|..|+.+|...|+|++|.+.+++..+
T Consensus 145 ~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 145 PDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999998887653
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.18 E-value=6.7e-11 Score=129.51 Aligned_cols=267 Identities=13% Similarity=0.078 Sum_probs=196.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--C-Cc----chHHHHHHHHHhcCCchHHHHHHHHhhcC----CCCCC-HhhHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE--K-DI----VAWSAMLAGYAQIGDTEGAVKIYRQLTSE----GVKPN-EFTFSSV 485 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 485 (838)
.+...+...|++++|...|++..+ + +. ..|..+...|...|++++|++.|++.... +-.|. ...+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 466778899999999999987754 2 22 46888999999999999999999987652 11222 2344555
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHHhcCC
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAK-----LNNALCVSSALVTMYSKKGN-----------------IESASEVFKRQRK 543 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~li~~y~k~g~-----------------~~~A~~~f~~~~~ 543 (838)
-..+... +.++.+...+..+++.. .......+..+...|...|+ +++|.+.+++...
T Consensus 133 ~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 133 GNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 5556666 88999988888776542 12235577888899999999 9999988876531
Q ss_pred -----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 544 -----R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----GITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 544 -----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
. ...+|..+...|...|++++|++.|++..+.... ++ ..++..+...+...|++++|..+++....
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 2357888999999999999999999998873111 12 13678888899999999999999998764
Q ss_pred cCCccC----CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCc
Q 046257 610 EHHIYP----TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHW 685 (838)
Q Consensus 610 ~~~~~p----~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~ 685 (838)
...-.. ....+..+..+|.+.|++++|.+.+++.- ..+.-....+.....|..++.+|...|++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 359 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL------------AIAQELGDRIGEARACWSLGNAHSAIGGH 359 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHHHHCCChHHHHHHHHHHHHHHHHhccH
Confidence 321111 13567788999999999999999998761 00000111122345788999999999999
Q ss_pred hHHHHHHHHHhh
Q 046257 686 QERARVRKLMND 697 (838)
Q Consensus 686 ~~a~~~~~~m~~ 697 (838)
++|...+++..+
T Consensus 360 ~~A~~~~~~al~ 371 (411)
T 4a1s_A 360 ERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=3e-09 Score=109.07 Aligned_cols=220 Identities=13% Similarity=0.031 Sum_probs=130.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046257 146 SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD----EGIVATAVQVHTMVIKNGGEVVTSVCNALI 221 (838)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~l~~~~~~~g~~~~~~~~~~li 221 (838)
++..+...|.+.|++++|+..|++..+. -+..++..+...+.. .+++++|...+....+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 3444444444455555555555544441 123344444444444 555555555555555543 344444555
Q ss_pred HHhHc----CCChhHHHHHHhcCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc
Q 046257 222 SMYLK----SKMVRDARAVFDGMED-RDSITWNSMVAGYVT----NELHMEAFETFNNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 222 ~~y~~----~g~~~~A~~~f~~m~~-~~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
..|.. .+++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+-..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 55555 5555555555554332 244455555556666 666677777776666554 34445555555555
Q ss_pred ----cCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHc----CCChHHHHHHHHhcccCCCeeehHHHHHHHHH----c
Q 046257 293 ----TKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSK----CGKMEDASKIFSMMREMKDVVSWTAMISGHLQ----N 360 (838)
Q Consensus 293 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~----~ 360 (838)
.++.++|...++...+.+ +...+..+..+|.. .++.++|...|++..+..+...+..+...|.+ .
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc
Confidence 677777777777777654 34566667777777 78888888888776544455667777777777 7
Q ss_pred CChHHHHHHHHHhhhcC
Q 046257 361 GAIDLAVNFFCQMTREG 377 (838)
Q Consensus 361 g~~~~A~~l~~~m~~~g 377 (838)
+++++|++.|++..+.|
T Consensus 236 ~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCSTTHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 88888888888877764
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.18 E-value=5.6e-10 Score=119.76 Aligned_cols=241 Identities=10% Similarity=0.050 Sum_probs=176.4
Q ss_pred ehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCC
Q 046257 349 SWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGI 428 (838)
Q Consensus 349 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~ 428 (838)
.|+.+...+.+.|++++|++.|++.... .|+..+ +++.+...|.+.|+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~------------------------------a~~~~g~~l~~~g~ 146 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYT------------------------------VWHFRRVLLKSLQK 146 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHH------------------------------HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHH------------------------------HHHHHHHHHHHccc
Confidence 4566666677777777777777777653 343322 23456666777775
Q ss_pred -HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHH
Q 046257 429 -LDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHA 504 (838)
Q Consensus 429 -~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 504 (838)
+++|...|++..+ .+...|+.+...|.+.|++++|+..|+++.+. .|+
T Consensus 147 d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~-------------------------- 198 (382)
T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAK-------------------------- 198 (382)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT--------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--Ccc--------------------------
Confidence 7777777776653 35677888888899999999999999888762 333
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHc
Q 046257 505 CSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQ-HGHTKKA-----LEVFKEMRRQ 575 (838)
Q Consensus 505 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~-~g~~~~A-----~~l~~~m~~~ 575 (838)
+...+..+..+|.+.|++++|...|+++. ..+...|+.+...|.. .|..++| ++.|++.++
T Consensus 199 ---------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~- 268 (382)
T 2h6f_A 199 ---------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK- 268 (382)
T ss_dssp ---------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-
T ss_pred ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-
Confidence 23344455566788899999999998876 4578899999999999 6666777 589999998
Q ss_pred CCCCC-hhHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcC---------CHHHHHHHHhh
Q 046257 576 DLEFD-GITFIGVITACTHAG--LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAG---------MLEKAMDIINR 642 (838)
Q Consensus 576 g~~pd-~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G---------~~~~A~~~~~~ 642 (838)
+.|+ ...|..+...+...| ++++|.+.+..+ ...| +...+..++++|.+.| .+++|.+++++
T Consensus 269 -l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~----~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 269 -LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL----QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp -HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH----TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh----ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 6776 457888888888888 589999988876 2344 4456888999998875 35889999987
Q ss_pred CCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 643 MPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 643 m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
+. .+++|.....|..++..+..
T Consensus 344 l~-----------------~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 344 LA-----------------KEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HH-----------------HTTCGGGHHHHHHHHHHHHH
T ss_pred HH-----------------HHhCchhHHHHHHHHHHHHH
Confidence 52 47788788877777666554
No 60
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.17 E-value=4e-08 Score=112.59 Aligned_cols=145 Identities=10% Similarity=0.085 Sum_probs=101.1
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHccCCC--C-CcchHHHHHHHHHhCCC---chHHHHHHHHH
Q 046257 97 GRQVHCECVKSGFARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE--S-NVVSWTSLLSGYARNKM---NDRVLELFHRM 170 (838)
Q Consensus 97 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~l~~~m 170 (838)
....++..+... +.|...|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.|+ .+.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 344555556665 46899999999999999999999999998875 3 44578888888888888 99999999998
Q ss_pred HHCC-CCCChhhHHHHHHHHhcCCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHhHc---------CCC
Q 046257 171 QVEG-IKPNSFTFSTVLGVLADEGIV--------ATAVQVHTMVIKN-GG-EVV-TSVCNALISMYLK---------SKM 229 (838)
Q Consensus 171 ~~~g-~~p~~~t~~~ll~~~~~~g~~--------~~a~~l~~~~~~~-g~-~~~-~~~~~~li~~y~~---------~g~ 229 (838)
.... ..|+...|..-+....+.++. +..+++|+.++.. |. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8754 247777777766655444432 3455788877664 65 443 4677777765443 234
Q ss_pred hhHHHHHHhcCCC
Q 046257 230 VRDARAVFDGMED 242 (838)
Q Consensus 230 ~~~A~~~f~~m~~ 242 (838)
++.++++|+....
T Consensus 210 ~~~~R~iy~raL~ 222 (679)
T 4e6h_A 210 VQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6677777776553
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.15 E-value=2.5e-09 Score=105.59 Aligned_cols=206 Identities=11% Similarity=-0.030 Sum_probs=119.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046257 144 VVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISM 223 (838)
Q Consensus 144 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 223 (838)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+++.. +.+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~------- 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEI------- 78 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHH-------
Confidence 4456667777777777777777777766543 1234556666666666666666666666665543 223334
Q ss_pred hHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhC-CChHHHHHHHHHhhhCCCCCC-hhhHHHHHHHHhccCcHHHHHH
Q 046257 224 YLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTN-ELHMEAFETFNNMGLAGAELT-RSTFVSVIKLCATTKELRLARQ 301 (838)
Q Consensus 224 y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 301 (838)
|..+...+... |++++|++.|+++.+.+..|+ ...+..+...+...|++++|..
T Consensus 79 ------------------------~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 79 ------------------------NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp ------------------------HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444455555 555555555555544222232 2344445555555566666666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc--C-CCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCC
Q 046257 302 LHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE--M-KDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGV 378 (838)
Q Consensus 302 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 378 (838)
.+..+++.. +.+...+..+...|.+.|++++|...|+.... + .+...|..+...+...|+.++|..+++.+...
T Consensus 135 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 211 (225)
T 2vq2_A 135 YLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN-- 211 (225)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--
Confidence 665555543 23455566666667777777777777666543 3 44555666666677777777777777776643
Q ss_pred CCCcccH
Q 046257 379 RPNGFTY 385 (838)
Q Consensus 379 ~pd~~t~ 385 (838)
.|+...+
T Consensus 212 ~p~~~~~ 218 (225)
T 2vq2_A 212 FPYSEEL 218 (225)
T ss_dssp CTTCHHH
T ss_pred CCCCHHH
Confidence 3444433
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.15 E-value=2.3e-10 Score=127.54 Aligned_cols=207 Identities=12% Similarity=0.043 Sum_probs=166.1
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc-hHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHH
Q 046257 429 LDEAAKVFELIDE---KDIVAWSAMLAGYAQIGDT-EGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHA 504 (838)
Q Consensus 429 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 504 (838)
++++...++.... .+...|..+...|...|++ ++|++.|++..+. .|
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p--------------------------- 134 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EP--------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CT---------------------------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CC---------------------------
Confidence 5555555554432 2445666666666677777 7777777666542 22
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHH
Q 046257 505 CSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQH---------GHTKKALEVFKEMR 573 (838)
Q Consensus 505 ~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~ 573 (838)
.+...+..+...|.+.|++++|.+.|++.. .|+...|..+...|... |++++|++.|++..
T Consensus 135 --------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 135 --------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp --------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 234556667788999999999999999875 67778899999999999 99999999999999
Q ss_pred HcCCCCC-hhHHHHHHHHHhcc--------CCHHHHHHHHHHHHhcCCccC----CCchHHHHHHHHHhcCCHHHHHHHH
Q 046257 574 RQDLEFD-GITFIGVITACTHA--------GLVDEGQQYFDIMVNEHHIYP----TMEHYSCMVDLYSRAGMLEKAMDII 640 (838)
Q Consensus 574 ~~g~~pd-~~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~G~~~~A~~~~ 640 (838)
+ +.|+ ...+..+..++... |++++|.+.|+...+. .| +...|..+..+|.+.|++++|.+.+
T Consensus 207 ~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 207 Q--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9 5665 56788888888888 9999999999999843 45 5678899999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 641 NRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 641 ~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++. ++++|+++.++..++.+|...|++++|.+.+.++
T Consensus 282 ~~a------------------l~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 282 SQA------------------AALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHH------------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 987 7899999999999999999999999999865544
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=2.1e-09 Score=102.31 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITAC 591 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~ 591 (838)
..+..+...|...|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 345567778899999999999999887 346788999999999999999999999999985 45 466788888899
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI 671 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~ 671 (838)
...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ++..|+++..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~ 146 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIA------------------LGLRPNEGKV 146 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH------------------HhcCccchHH
Confidence 99999999999999988542 235567888899999999999999999987 6778999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+..++.+|...|++++|.+.++...+.
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999988653
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=3.3e-09 Score=110.96 Aligned_cols=242 Identities=13% Similarity=0.107 Sum_probs=174.3
Q ss_pred HHHHHHHHhcCC---CCcchHHHHHHHHHh-------cCCc-------hHHHHHHHHhhcCCCCCCH-hhHHHHHHHhcC
Q 046257 430 DEAAKVFELIDE---KDIVAWSAMLAGYAQ-------IGDT-------EGAVKIYRQLTSEGVKPNE-FTFSSVINACTA 491 (838)
Q Consensus 430 ~~A~~~f~~~~~---~~~~~~~~li~~~~~-------~g~~-------~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 491 (838)
++|..+|++... .+...|..++..+.+ .|+. ++|..+|++.... +.|+. ..|..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 567777776654 466678888777753 5776 8999999998863 24544 466666666666
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHH-HcCChHHHH
Q 046257 492 PSAAVEQGKQFHACSIKAKLNNALC-VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYA-QHGHTKKAL 566 (838)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~-~~g~~~~A~ 566 (838)
. +..+.+..++..+++.... +.. ++..+...+.+.|++++|.++|++.. +.+...|........ ..|+.++|.
T Consensus 112 ~-~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 R-MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp T-TCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred c-CCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 6 8899999999988874322 333 78889999999999999999999875 234455554433322 369999999
Q ss_pred HHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 567 EVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 567 ~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++|++..+ ..|+ ...+..++..+...|++++|..+|+.......+.|+ ...|..++..+.+.|+.++|..+++++
T Consensus 190 ~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998 4565 567888888899999999999999999854334553 457888899999999999999998875
Q ss_pred ----CCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 644 ----PFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 644 ----~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
|-.++...-..+..-.++++++|+++.....|+
T Consensus 268 ~~~~p~~~~~~~~~~~~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 268 FTAFREEYEGKETALLVDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHHTTTTTSSCHHHHHHTTTCBTTBCSSCHHHHHTTT
T ss_pred HHHcccccccchHHHHHHHHHhcccCCCCHHHHHhcC
Confidence 322222211222222337788888887766553
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=2.9e-10 Score=120.04 Aligned_cols=268 Identities=13% Similarity=0.085 Sum_probs=193.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC--C-C----cchHHHHHHHHHhcCCchHHHHHHHHhhcC----CCCCC-HhhHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE--K-D----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE----GVKPN-EFTFSSV 485 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 485 (838)
.....+...|++++|...|++..+ + + ...|..+...|...|++++|++.+++.... +-.|. ..++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 456678899999999999998753 2 2 356888899999999999999999887542 21222 2344555
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHhcCC-Cc----hhHHHHHHHHHHhcCC--------------------HHHHHHHHHh
Q 046257 486 INACTAPSAAVEQGKQFHACSIKAKLN-NA----LCVSSALVTMYSKKGN--------------------IESASEVFKR 540 (838)
Q Consensus 486 l~a~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~li~~y~k~g~--------------------~~~A~~~f~~ 540 (838)
-..+... +.++.+...+....+.... .+ ..++..+...|...|+ +++|.+.+++
T Consensus 90 ~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 90 GNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 5556666 8899999888877653211 11 3477788899999999 9999988876
Q ss_pred cCC-----C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHhccCCHHHHHHHHHH
Q 046257 541 QRK-----R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL-EFD----GITFIGVITACTHAGLVDEGQQYFDI 606 (838)
Q Consensus 541 ~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~ 606 (838)
... + ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+++.
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 531 1 235788889999999999999999999876311 112 23677888889999999999999998
Q ss_pred HHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Q 046257 607 MVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT 682 (838)
Q Consensus 607 m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~ 682 (838)
..+...-.++ ...+..+..+|.+.|++++|.+.+++.- ....-..-.+.....+..++.+|...
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL------------AIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 7643211111 4467788899999999999999998761 00000000111245788999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 046257 683 GHWQERARVRKLMNDR 698 (838)
Q Consensus 683 g~~~~a~~~~~~m~~~ 698 (838)
|++++|...+++..+.
T Consensus 317 g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999999988753
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.11 E-value=1.4e-09 Score=118.85 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~ 581 (838)
..+..+...|...|++++|.+.|++... .+ ..+|..+...|...|++++|++.|++..+.... .+ .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3556677789999999999999987651 12 237888999999999999999999988763111 11 3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++..+...+...|++++|.++++.......-.++ ...+..+..+|.+.|++++|.+.+++.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56778888999999999999999987643211111 336778899999999999999999976
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.09 E-value=3.8e-10 Score=122.95 Aligned_cols=263 Identities=13% Similarity=0.090 Sum_probs=195.7
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCC--C-C----cchHHHHHHHHHhcCCchHHHHHHHHhhcC----CCCCC-HhhHH
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDE--K-D----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE----GVKPN-EFTFS 483 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 483 (838)
+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++.... +-.|. ..++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34567788899999999999987753 2 2 246888899999999999999999886542 22222 23444
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhcCC-C----chhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 046257 484 SVINACTAPSAAVEQGKQFHACSIKAKLN-N----ALCVSSALVTMYSKKGN--------------------IESASEVF 538 (838)
Q Consensus 484 ~ll~a~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~li~~y~k~g~--------------------~~~A~~~f 538 (838)
.+-..+... +.++.+...+..+.+.... . ...++..+...|...|+ +++|.+.+
T Consensus 92 ~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 92 NLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555556666 8899998888776653211 1 24477788899999999 99999888
Q ss_pred HhcC-----CC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHhccCCHHHHHHHH
Q 046257 539 KRQR-----KR----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL-EFD----GITFIGVITACTHAGLVDEGQQYF 604 (838)
Q Consensus 539 ~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~ 604 (838)
++.. .. ...+|..+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 7653 11 235788899999999999999999999876311 122 237888888999999999999999
Q ss_pred HHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC------CCCchhHHH
Q 046257 605 DIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQ------PHDSAIYVL 674 (838)
Q Consensus 605 ~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~------P~~~~~y~~ 674 (838)
+.......-.++ ...+..+...|.+.|++++|.+.+++. +++. |.....+..
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------------------LAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH------------------HHHHHhcCCcHHHHHHHHH
Confidence 987643211111 446778899999999999999999876 2221 112567889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 046257 675 LSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 675 l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++.+|...|++++|.+.+++..+
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.06 E-value=1.7e-09 Score=113.92 Aligned_cols=267 Identities=13% Similarity=0.038 Sum_probs=166.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHhccc-CC-C----eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 319 TGLMVAYSKCGKMEDASKIFSMMRE-MK-D----VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 319 ~~Li~~y~~~g~~~~A~~~f~~~~~-~~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
......+...|++++|...|++..+ .| + ...|..+...|...|++++|++.+++........+.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 78 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD---------- 78 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc----------
Confidence 3445566677777777777776643 22 2 234566666777777777777777766542100000
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCC----
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGD---- 459 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~---- 459 (838)
......++..+...|...|++++|...|++..+ .+ ..+|..+...|...|+
T Consensus 79 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 79 ----------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred ----------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 000123345556666666666666666655432 11 1245555555555555
Q ss_pred ----------------chHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcC-CCchhHHHHHH
Q 046257 460 ----------------TEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL-NNALCVSSALV 522 (838)
Q Consensus 460 ----------------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li 522 (838)
+++|++.+++.... ..+.+. .....++..+.
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~--------------------------------~~~~~~~~~~~~~~~~l~ 190 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSL--------------------------------VTALGDRAAQGRAFGNLG 190 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHTCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHH--------------------------------HHhcCCHHHHHHHHHHHH
Confidence 44444444333210 000111 11234566778
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----hhHHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----GITFIGVI 588 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll 588 (838)
..|...|++++|.+.|++... ++ ..+|..+...|...|++++|++.|++..+.... ++ ..++..+.
T Consensus 191 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 270 (338)
T 3ro2_A 191 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 270 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 889999999999999987651 12 247888999999999999999999998763111 12 35677788
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..+...|++++|..+++.......-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 271 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 271 NTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8899999999999999987643211111 336778899999999999999999876
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=2.6e-09 Score=106.16 Aligned_cols=149 Identities=14% Similarity=0.046 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---K-RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVI 588 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 588 (838)
|+..+..+...|.+.|++++|.+.|++.. + ++...|..+...|...|++++|++.|++..+ ..|+. .++..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 45666677788999999999999998765 3 7888888899999999999999999999998 67774 5788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC-C-------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT-M-------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
.++...|++++|...++...+. .|+ . ..|..+...+.+.|++++|.+.+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----------------- 143 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA----------------- 143 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH-----------------
Confidence 9999999999999999998854 344 2 45778889999999999999999987
Q ss_pred HhccCCC--CchhHHHHHHHHHhcCCc
Q 046257 661 LISLQPH--DSAIYVLLSNMYAATGHW 685 (838)
Q Consensus 661 ~~~l~P~--~~~~y~~l~~~y~~~g~~ 685 (838)
++++|+ ++.++..++.+|...|+.
T Consensus 144 -l~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 144 -TDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp -TTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 677777 777788888888777776
No 70
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.05 E-value=3.8e-07 Score=104.51 Aligned_cols=204 Identities=10% Similarity=0.012 Sum_probs=96.2
Q ss_pred cchhhHHHHHHHHcCCHHHHH-HHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCC---------CCCH
Q 046257 413 FSVGTALLNAYVKKGILDEAA-KVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV---------KPNE 479 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~-~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~~ 479 (838)
..+|-..+..+...|+.++|. ++|+.... ++...|-..+...-+.|++++|.++|+++..... .|+.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 344445555556667777775 77765543 2344566666777777777777777777664210 0210
Q ss_pred hhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----CHHHHHHHHHH
Q 046257 480 FTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKR----DLVSWNSMICG 555 (838)
Q Consensus 480 ~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~li~~ 555 (838)
. +....+. .....+|...++...+.|.++.|+++|++..+. ....|-..+..
T Consensus 423 ~----------------~~~~~~~--------~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 423 E----------------SAINQLK--------SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp H----------------HHHHHHH--------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred h----------------hhhhhhc--------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 0 0000000 001224444455555555556666665554311 11122111111
Q ss_pred HHHc-CChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhcC
Q 046257 556 YAQH-GHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAG 631 (838)
Q Consensus 556 ~~~~-g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G 631 (838)
-.+. ++.+.|..+|+..++. .|+ ...+...+......|+.+.|+.+|+..+... ..+ ....|...++.-.+.|
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~-~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI-SDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS-SSTTHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHcC
Confidence 1122 3355666666655553 332 2333444444445556666666666554221 000 1234555555555566
Q ss_pred CHHHHHHHHhhC
Q 046257 632 MLEKAMDIINRM 643 (838)
Q Consensus 632 ~~~~A~~~~~~m 643 (838)
..+.+.++.+++
T Consensus 556 ~~~~~~~v~~R~ 567 (679)
T 4e6h_A 556 SLNSVRTLEKRF 567 (679)
T ss_dssp CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666555554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.05 E-value=2.4e-10 Score=119.48 Aligned_cols=238 Identities=9% Similarity=0.084 Sum_probs=144.9
Q ss_pred cchhhHHHHHHHHcCCHHHHHHHHHhcCC--------C---CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhh
Q 046257 413 FSVGTALLNAYVKKGILDEAAKVFELIDE--------K---DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFT 481 (838)
Q Consensus 413 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 481 (838)
..++..+...|...|++++|...|+++.+ . ....|..+...|...|++++|++.|++.....-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 34556677777788888888887776643 1 234566777777777788777777776653200
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------C-CHHHHH
Q 046257 482 FSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK----------R-DLVSWN 550 (838)
Q Consensus 482 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~ 550 (838)
.......+.....+..+...|...|++++|.+.|++... + ....|.
T Consensus 101 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 101 -----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp -----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 000000011233455666778888888888887776541 1 235677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CccCCC
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQ------DLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH------HIYPTM 617 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~ 617 (838)
.+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|.++++.+.+.. ...+..
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 7888888888888888888888774 22333 2467777788888888888888888876421 112222
Q ss_pred c-hHHH------HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHH
Q 046257 618 E-HYSC------MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 618 ~-~y~~------lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
. .+.. +...+...+.+++|...+++. .+..|.++..+..++.+|...|++++|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC------------------KVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------------------------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc------------------CCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 2221 122233334444444444433 34567788889999999999999999999
Q ss_pred HHHHHhh
Q 046257 691 VRKLMND 697 (838)
Q Consensus 691 ~~~~m~~ 697 (838)
.+++..+
T Consensus 300 ~~~~al~ 306 (311)
T 3nf1_A 300 LEEAAMR 306 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=3.4e-09 Score=118.02 Aligned_cols=178 Identities=8% Similarity=0.014 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNI-ESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. +.+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433322 234667778888889999999 99999999875 45688999999999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhc--------CCH
Q 046257 572 MRRQDLEFDGITFIGVITACTHA---------GLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRA--------GML 633 (838)
Q Consensus 572 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~--------G~~ 633 (838)
..+ +.|+...+..+..++... |++++|.+.|+...+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 999 678888888999999999 9999999999999853 454 56788899999998 999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 634 EKAMDIINRMPFAASATVWRTVLAACRLISLQP---HDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 634 ~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P---~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++|.+.+++. ++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 238 ~~A~~~~~~a------------------l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 238 QQALSAYAQA------------------EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHH------------------HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987 78899 9999999999999999999999999999875
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.03 E-value=4.3e-09 Score=100.59 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=125.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHH
Q 046257 443 DIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALV 522 (838)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 522 (838)
+...|..+...|.+.|++++|++.|++..+. .|+. ...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~-----------------------------------~~~~~~la 46 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNN-----------------------------------VETLLKLG 46 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTC-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-----------------------------------HHHHHHHH
Confidence 4456788888888889999999888887652 3332 33444556
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHH
Q 046257 523 TMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVD 598 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 598 (838)
..|.+.|++++|...++... +.+...|..+...+...+++++|.+.+++... ..|+ ...+..+..++...|+++
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~ 124 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHD 124 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCch
Confidence 67888899999988887764 45677888888888999999999999999888 4555 566778888889999999
Q ss_pred HHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 599 EGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+|.+.|+...+. .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 125 ~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 125 KAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999988743 34 4567888889999999999999999876
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.02 E-value=3.4e-09 Score=114.78 Aligned_cols=163 Identities=10% Similarity=0.114 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD-G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~ 581 (838)
.+++.+...|...|++++|.+.|++.. .++ ..+|+.+...|...|++++|++.|++..+. +..|+ .
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 456677888999999999999988765 122 247888999999999999999999998872 33244 4
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
.++..+...+...|++++|..+++...+...-.++ ...+..+..+|...|+ +++|.+++++....
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~--------- 335 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLY--------- 335 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCH---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCH---------
Confidence 67888899999999999999999987643211112 2235667888899999 99999999987422
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
|.....+..|+.+|...|++++|...+++..+
T Consensus 336 ----------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ----------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22455678899999999999999999998754
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=2.5e-08 Score=104.25 Aligned_cols=162 Identities=7% Similarity=-0.029 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCh-h-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 046257 146 SWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNS-F-TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISM 223 (838)
Q Consensus 146 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~ 223 (838)
.|..++..+.+.|++++|..+|++..+. .|+. . .|..+...+.+.|++++|+.+|..+++.. +.+..+|......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4444444444444444444444444431 2221 1 34444444444444444444444444432 1222223222222
Q ss_pred hH-cCCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHhhhCC-CCCC--hhhHHHHHHHHhccCcH
Q 046257 224 YL-KSKMVRDARAVFDGMED---RDSITWNSMVAGYVTNELHMEAFETFNNMGLAG-AELT--RSTFVSVIKLCATTKEL 296 (838)
Q Consensus 224 y~-~~g~~~~A~~~f~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~ 296 (838)
.. ..|+.++|+.+|+...+ .+...|..++..+.+.|++++|..+|++..... +.|+ ...|...+....+.|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 11 13555555555544322 234455555555556666666666666665542 3332 23445555555556666
Q ss_pred HHHHHHHHHHHHhC
Q 046257 297 RLARQLHSQVLKNG 310 (838)
Q Consensus 297 ~~a~~~~~~~~~~g 310 (838)
+.+..++..+.+..
T Consensus 258 ~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 258 ASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666553
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.93 E-value=2.7e-08 Score=107.37 Aligned_cols=228 Identities=11% Similarity=0.094 Sum_probs=165.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHhhcCCC-CCC-HhhHHHHHH
Q 046257 419 LLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGV-KPN-EFTFSSVIN 487 (838)
Q Consensus 419 Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~~ll~ 487 (838)
....+...|++++|...|++..+ ++ ...+..+...|...|++++|+..+.+....-. .++ ..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 179 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------- 179 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-------
Confidence 34456788999999999987653 12 24677888888999999999988887654210 000 00
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHH
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQ 558 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~ 558 (838)
....+++.+...|...|++++|.+.|++... ++ ..+++.+...|..
T Consensus 180 -------------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 234 (378)
T 3q15_A 180 -------------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR 234 (378)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0123455677788999999999998876541 22 3578889999999
Q ss_pred cCChHHHHHHHHHHHHcC---CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC---chHHHHHHHHHhcC
Q 046257 559 HGHTKKALEVFKEMRRQD---LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM---EHYSCMVDLYSRAG 631 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g---~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~y~~lv~~l~r~G 631 (838)
.|++++|++.|++..+.. -.|+ ..++..+...+.+.|++++|..+++...+...-.++. ..+..+..++...|
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999988720 1233 5678888889999999999999999987543332232 23555667777888
Q ss_pred C---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 632 M---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 632 ~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+ +++|.+.+++... .|.....+..++.+|...|++++|...+++..+
T Consensus 315 ~~~~~~~al~~~~~~~~-------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNL-------------------HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHTTC-------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC-------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 8999999998632 122345677899999999999999999887753
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=114.27 Aligned_cols=167 Identities=10% Similarity=0.029 Sum_probs=122.0
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHh------C
Q 046257 42 NFVEYNRLLFEYCRDSLHQEALNLFLGIRRL-------GLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKS------G 108 (838)
Q Consensus 42 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g 108 (838)
+...|..+...+...|++++|+..|+++.+. ..+.....+..+...+...|+++.|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457888899999999999999999998863 22333456777888888899999999988887764 2
Q ss_pred C-CCChhHHHHHHHHHHhCCChHHHHHHHccCCC----------C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHC---
Q 046257 109 F-ARDVNVSTSLVDLYMRTNNVEDGRRVFDDMNE----------S-NVVSWTSLLSGYARNKMNDRVLELFHRMQVE--- 173 (838)
Q Consensus 109 ~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 173 (838)
. +....++..+...|...|++++|...|++..+ + ...+|..+...|...|++++|++.|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22345677788888888888888888876542 1 2345777788888888888888888887653
Q ss_pred ---CCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 046257 174 ---GIKP-NSFTFSTVLGVLADEGIVATAVQVHTMVIKN 208 (838)
Q Consensus 174 ---g~~p-~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~ 208 (838)
+..| ...++..+...+...|++++|...+..+++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 2345667777777888888888888777753
No 78
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=2e-09 Score=99.11 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKR---DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL 596 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~ 596 (838)
|..+|...|++++|...++...+. +...|..+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 455677889999999999887743 345677889999999999999999999999 6776 5678889999999999
Q ss_pred HHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHH-HHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 597 VDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMD-IINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~-~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
+++|...|+...+ +.|+ ...|..+..+|.+.|++++|.+ ++++. ++++|+++.+|.+
T Consensus 81 ~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~a------------------l~l~P~~~~~~~l 139 (150)
T 4ga2_A 81 TDKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERA------------------AKLFPGSPAVYKL 139 (150)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHH------------------HHHSTTCHHHHHH
T ss_pred hHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH------------------HHhCcCCHHHHHH
Confidence 9999999999884 3564 5678889999999999987665 46776 7899999999999
Q ss_pred HHHHHHhcCC
Q 046257 675 LSNMYAATGH 684 (838)
Q Consensus 675 l~~~y~~~g~ 684 (838)
.+.++...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 9999998886
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.89 E-value=2.9e-08 Score=94.29 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=123.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 445 VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 445 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
..|..+...+...|++++|++.|+++... .|+ +...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------------------------------~~~~~~~~~~~ 51 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAF-----------------------------------DVDVALHLGIA 51 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSC-----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--Ccc-----------------------------------ChHHHHHHHHH
Confidence 34667778888899999999999887653 222 12234445566
Q ss_pred HHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHH
Q 046257 525 YSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 525 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 601 (838)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+..++...|++++|.
T Consensus 52 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 52 YVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHH
Confidence 788889999998888765 4567888888999999999999999999988852 334567788888889999999999
Q ss_pred HHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 602 QYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.+++.+.+.. +.+...+..++..+.+.|++++|.+.++++
T Consensus 131 ~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 131 DSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999887542 224567888889999999999999999876
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.87 E-value=1.4e-07 Score=101.96 Aligned_cols=229 Identities=11% Similarity=0.054 Sum_probs=153.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccc----CCC----eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 321 LMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
....+...|++++|...|++... .+| ..+|..+...|...|++++|+..+.+..+.-...+....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI------- 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH-------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH-------
Confidence 55677888999999999988753 122 246888889999999999999999988763111110000
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHH
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGDTEGA 463 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 463 (838)
....+++.+...|...|++++|.+.|++..+ ++ ..+|..+...|...|++++|
T Consensus 182 ------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 182 ------------------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0012345678889999999999998886642 11 13678888889999999999
Q ss_pred HHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046257 464 VKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKL-NNALCVSSALVTMYSKKGNIESASEVFKRQR 542 (838)
Q Consensus 464 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 542 (838)
++.|++..... .+.+. +....++..+...|.+.|++++|.+.|++..
T Consensus 244 ~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 244 IPYFKRAIAVF--------------------------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHH--------------------------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99888776510 00011 1123344456667778888888888777654
Q ss_pred C-----CC---HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 543 K-----RD---LVSWNSMICGYAQHGH---TKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 543 ~-----~~---~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
. .+ ...++.+...|...|+ .++|+.++++. +..|+ ...+..+...+...|++++|..+|+...+
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 292 AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 12 2235667777777787 67777777665 33443 34566777788888888888888887653
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.87 E-value=4e-08 Score=97.50 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=135.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046257 442 KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSAL 521 (838)
Q Consensus 442 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 521 (838)
.|...|......|.+.|++++|++.|++..+....++...+..+-.++... +..+.+...+...++.. +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 355678888899999999999999999988754335666655555555555 77777777777776644 2255666667
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--h-hHHHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDL-------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--G-ITFIGVI 588 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~-~t~~~ll 588 (838)
...|.+.|++++|.+.|++.. +.+. ..|..+...+...|++++|++.|++..+ +.|+ . ..+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 777777777777777777654 2334 3466666777777777777777777776 4565 2 3444555
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
.++. ..+..+++.+.... ..+...|... .....|.+++|.+.+++. ++++|++
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~--~~~~~~~~~~--~~~~~~~~~~A~~~~~~a------------------~~l~p~~ 213 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLA--SSNKEKYASE--KAKADAAFKKAVDYLGEA------------------VTLSPNR 213 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGT--TTCHHHHHHH--HHHHHHHHHHHHHHHHHH------------------HHHCTTC
T ss_pred HHHH-----HHHHHHHHHHHhcc--cCCHHHHHHH--HHHHHHHHHHHHHHHHHH------------------hhcCCCC
Confidence 5553 33444445544211 1122223222 233445568888888876 7899999
Q ss_pred chhHHHHHHHHH
Q 046257 669 SAIYVLLSNMYA 680 (838)
Q Consensus 669 ~~~y~~l~~~y~ 680 (838)
+.+...|..+..
T Consensus 214 ~~~~~~l~~i~~ 225 (228)
T 4i17_A 214 TEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 988888877654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=6.3e-09 Score=106.68 Aligned_cols=184 Identities=13% Similarity=0.196 Sum_probs=134.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------C
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR-----------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ------D 576 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 576 (838)
...++..+...|...|++++|...|++.. .....+|..+...|...|++++|++.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34566677888999999999999887654 113467888999999999999999999998874 1
Q ss_pred CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC-----CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCC-----
Q 046257 577 LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH-----HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMP----- 644 (838)
Q Consensus 577 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~----- 644 (838)
-.|+ ..++..+...+...|++++|..+++.+.+.. +-.| ....+..+..+|.+.|++++|.+.++++-
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1233 4578888889999999999999999887431 1122 24567888999999999999999998752
Q ss_pred -----CCCC-HHHHHHHHHHHH--------------------HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 645 -----FAAS-ATVWRTVLAACR--------------------LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 645 -----~~~~-~~~w~~ll~~c~--------------------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..+. ...|..+-.... +....|..+..+..|+.+|...|++++|..++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1121 123332222111 1123456677899999999999999999999988754
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=7.4e-08 Score=97.83 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR--KR-D---LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD----GIT 583 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t 583 (838)
+...+-.+...+.+.|++++|...|+++. .| + ...|..+...|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 34455556677889999999999999886 23 3 567888999999999999999999999984 453 235
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHHHhcCCccCCC-chH-----------------HHHHHHHHhcCCHHHHH
Q 046257 584 FIGVITACTH--------AGLVDEGQQYFDIMVNEHHIYPTM-EHY-----------------SCMVDLYSRAGMLEKAM 637 (838)
Q Consensus 584 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~y-----------------~~lv~~l~r~G~~~~A~ 637 (838)
+..+..++.. .|++++|...|+..++.+ |+. ... ..+...|.+.|++++|.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6666777777 899999999999998654 432 333 45688899999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHhc----------CCchHHHHHHHHHhhCCCccCC
Q 046257 638 DIINRMPFAASATVWRTVLAACRLISLQPHD---SAIYVLLSNMYAAT----------GHWQERARVRKLMNDRKVKKEA 704 (838)
Q Consensus 638 ~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~---~~~y~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~ 704 (838)
+.++++ ++..|++ +..+..++.+|... |++++|...+++..+..
T Consensus 169 ~~~~~~------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----- 225 (261)
T 3qky_A 169 VTYEAV------------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----- 225 (261)
T ss_dssp HHHHHH------------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHH------------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----
Confidence 999987 6677764 45888999999977 99999999999987532
Q ss_pred ceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 046257 705 GYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKD 744 (838)
Q Consensus 705 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 744 (838)
..+|........+.++...+.+
T Consensus 226 ------------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2456667777777777776665
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=5.3e-07 Score=96.89 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=153.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCC-----CCc----chHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFELIDE-----KDI----VAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINA 488 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 488 (838)
.+...|...|++++|...+++... .+. .+++.+...+...|++++|++.+++......
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~------------- 124 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN------------- 124 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------
Confidence 455566677777777777765532 111 2355677778888999999888887654210
Q ss_pred hcCChhhHHHHHHHHHHHHHhcCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC------CHHHHHHHHHHHH
Q 046257 489 CTAPSAAVEQGKQFHACSIKAKLN--N-ALCVSSALVTMYSKKGNIESASEVFKRQR--KR------DLVSWNSMICGYA 557 (838)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~------~~~~~~~li~~~~ 557 (838)
+.+.. + ....+..+...|...|++++|...+++.. .+ ...+|..+...+.
T Consensus 125 -------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 125 -------------------EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp -------------------HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred -------------------HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 00000 1 12233446667888999999999887653 11 2356788888999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----chHHHHHHH
Q 046257 558 QHGHTKKALEVFKEMRRQDLEFDG-ITFI-----GVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EHYSCMVDL 626 (838)
Q Consensus 558 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~ 626 (838)
..|++++|...+++.....-.++. ..+. ..+..+...|+.++|..+++..... .|.. ..+..+..+
T Consensus 186 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 186 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhHHHHHHHHHH
Confidence 999999999999998864222221 1222 2334467899999999999987632 2221 135677889
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 627 YSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+...|++++|.+.+++.- ....-....+.....+..++.+|...|+.++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELN------------ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH------------HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998751 00000000011123677889999999999999999887754
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.82 E-value=5.7e-08 Score=86.58 Aligned_cols=129 Identities=17% Similarity=0.327 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHH
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLY 627 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 627 (838)
.|..+...|...|++++|+++|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677777788888888888888887742 2235566677777778888888888888776432 22345667778888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 628 SRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 628 ~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.+.|++++|.+.++++ ++..|+++..+..++.+|...|++++|...++.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKA------------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888876 566777788888888888888888888888887754
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.76 E-value=4.6e-08 Score=113.49 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|.+.|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 467899999999999999999999999999 6787 56899999999999999999999999884 4565 568899
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+..+|.+.|++++|++.+++. ++++|+++.+|..|+.+|...|++++|.+.+++..+.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kA------------------l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRA------------------IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987 8999999999999999999999999999999988763
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.75 E-value=2.6e-07 Score=95.58 Aligned_cols=207 Identities=11% Similarity=-0.023 Sum_probs=143.0
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHH
Q 046257 428 ILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSI 507 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~ 507 (838)
++++|...|+.. ...|...|++++|++.|.+....... . ++..
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~---------------~-~~~~---------- 74 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKK---------------A-GNED---------- 74 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHH---------------T-TCHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHH---------------h-CCHH----------
Confidence 478888776654 67788889999998888876541000 0 0000
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCC
Q 046257 508 KAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQH-GHTKKALEVFKEMRRQDL 577 (838)
Q Consensus 508 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~ 577 (838)
....+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|++.|++..+ +
T Consensus 75 -----~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~ 147 (292)
T 1qqe_A 75 -----EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--W 147 (292)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--H
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--H
Confidence 0123455677788888999999888876541 12 35788999999996 999999999999987 3
Q ss_pred CCC-------hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc-----hHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 046257 578 EFD-------GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME-----HYSCMVDLYSRAGMLEKAMDIINRMPF 645 (838)
Q Consensus 578 ~pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~y~~lv~~l~r~G~~~~A~~~~~~m~~ 645 (838)
.|+ ..++..+...+...|++++|..+|+...+...-.+... .|..+..++...|++++|.+.+++.
T Consensus 148 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-- 225 (292)
T 1qqe_A 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG-- 225 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG--
T ss_pred HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--
Confidence 332 24688889999999999999999999884321112211 4677788899999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchh-----HHHHHHHHH--hcCCchHHHHHHHHHh
Q 046257 646 AASATVWRTVLAACRLISLQPHDSAI-----YVLLSNMYA--ATGHWQERARVRKLMN 696 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~~~~-----y~~l~~~y~--~~g~~~~a~~~~~~m~ 696 (838)
++++|+.... +..+...|. ..+++++|.+.++.+.
T Consensus 226 ----------------l~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 226 ----------------QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp ----------------GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred ----------------HhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 5666654432 334555554 4577888888776553
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=3.2e-07 Score=90.72 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=123.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC--CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----HHHHH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR--KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI----TFIGV 587 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~l 587 (838)
+-.+...|.+.|++++|...|+++. .|+ ...+..+..+|.+.|++++|++.|++..+ ..|+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHHHH
Confidence 3344556788899999999998876 232 25678888899999999999999999988 456542 33333
Q ss_pred HHHHh------------------ccCCHHHHHHHHHHHHhcCCccCCCc-hH-----------------HHHHHHHHhcC
Q 046257 588 ITACT------------------HAGLVDEGQQYFDIMVNEHHIYPTME-HY-----------------SCMVDLYSRAG 631 (838)
Q Consensus 588 l~a~~------------------~~g~~~~a~~~~~~m~~~~~~~p~~~-~y-----------------~~lv~~l~r~G 631 (838)
..++. ..|+.++|...|+.+++.+ |+.. .+ ..+...|.+.|
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333 2578999999999988543 5432 22 24567889999
Q ss_pred CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 046257 632 MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDS---AIYVLLSNMYAATGHWQERARVRKLMNDRKVK 701 (838)
Q Consensus 632 ~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~---~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 701 (838)
++++|...++++ ++..|+++ .++..++.+|...|++++|.+.++.+...+.+
T Consensus 162 ~~~~A~~~~~~~------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 162 AWVAVVNRVEGM------------------LRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp CHHHHHHHHHHH------------------HHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred cHHHHHHHHHHH------------------HHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 999999999987 67788765 57899999999999999999999999887654
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=1.5e-06 Score=93.23 Aligned_cols=223 Identities=7% Similarity=-0.130 Sum_probs=128.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCcc----cHHHHHHHhccCCChhhHHHHHHHHHHhCCC-CCh----hHHHHHH
Q 046257 50 LFEYCRDSLHQEALNLFLGIRRLGLPLFGS----TLSSVLKTCGCLFDHVFGRQVHCECVKSGFA-RDV----NVSTSLV 120 (838)
Q Consensus 50 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~----~~~~~li 120 (838)
...+...|++++|+..+++........+.. .+..+...+...|+++.|...+...++.... .+. .+++.+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345567899999999998877654222221 3444555666778888888888776653211 111 2345566
Q ss_pred HHHHhCCChHHHHHHHccCCC-------C----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--C--ChhhHHHH
Q 046257 121 DLYMRTNNVEDGRRVFDDMNE-------S----NVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIK--P--NSFTFSTV 185 (838)
Q Consensus 121 ~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 185 (838)
..|...|++++|...|++... + ...++..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 677777888887777765431 1 1224555666777777888887777776543211 1 12345556
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHhHcCCChhHHHHHHhcCCCCCc-------chHHHHH
Q 046257 186 LGVLADEGIVATAVQVHTMVIKNGGEVVT-SVCN-----ALISMYLKSKMVRDARAVFDGMEDRDS-------ITWNSMV 252 (838)
Q Consensus 186 l~~~~~~g~~~~a~~l~~~~~~~g~~~~~-~~~~-----~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~n~li 252 (838)
...+...|++++|...++...+..-.++. ..+. .++..+...|+.++|...+++....+. ..+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 66666777777777777776654211111 1111 223335566777777666666554221 1234455
Q ss_pred HHHHhCCChHHHHHHHHHhh
Q 046257 253 AGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~ 272 (838)
..+...|++++|.+.+++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55666666666666665543
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=1.7e-08 Score=92.84 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=102.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHh
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSR 629 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 629 (838)
|...+...|+.++|++.+++... ..|+ ...+..+...|...|++++|.+.|+..++. .| +...|..+..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 44556677899999999999876 4555 456778889999999999999999999843 46 45788999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHH-HHHhh
Q 046257 630 AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVR-KLMND 697 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~-~~m~~ 697 (838)
.|++++|.+.+++. ++++|+++.+|..++.+|...|++++|.+.+ ++..+
T Consensus 78 ~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 78 EENTDKAVECYRRS------------------VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999987 8999999999999999999999999887754 65543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=3.1e-07 Score=81.70 Aligned_cols=124 Identities=18% Similarity=0.310 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhc
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTH 593 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 593 (838)
.+..+...|...|++++|.++|+++. +.+...|..+...+...|++++|+..|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 45667788999999999999998765 4577889999999999999999999999999853 2345678888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|++++|.++++.+.+.. +.+...+..++..+.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 999999999999988542 224567888999999999999999999876
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.70 E-value=4.6e-07 Score=105.58 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=126.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVI 588 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 588 (838)
.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ +.|+ ...+..+.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 345566677788999999999999999876 55788999999999999999999999999999 5676 46788899
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
.++...|++++ .+.|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. ++++|+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------l~l~P~ 566 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVRTLDEV------------------PPTSRH 566 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS------------------CTTSTT
T ss_pred HHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHHHHHhh------------------cccCcc
Confidence 99999999999 9999998843 454 467888999999999999999999998 688999
Q ss_pred CchhHHHHHHHHHhcCC
Q 046257 668 DSAIYVLLSNMYAATGH 684 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~ 684 (838)
+..++..++.+|...|+
T Consensus 567 ~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHccCC
Confidence 99999999999988666
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=1.7e-07 Score=88.72 Aligned_cols=156 Identities=10% Similarity=0.023 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-Hhc
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITA-CTH 593 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~ 593 (838)
...+...+.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++... ..|+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHh
Confidence 3445667889999999999999987 45778899999999999999999999999877 45544332222111 122
Q ss_pred cCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC--ch
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD--SA 670 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~--~~ 670 (838)
.+...+|...++...+. .|+ ...+..+..+|.+.|++++|.+.++++ ++.+|+. +.
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~------------------l~~~p~~~~~~ 145 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNI------------------LKVNLGAQDGE 145 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTCTTTTTTH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHhCcccChHH
Confidence 22233578888887743 464 677888999999999999999999987 7788764 66
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 671 IYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 671 ~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+..++.+|...|+.++|...+++..
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 89999999999999999999887653
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.69 E-value=4.4e-07 Score=93.83 Aligned_cols=194 Identities=9% Similarity=0.050 Sum_probs=139.1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcCCC-----C----cchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHH
Q 046257 416 GTALLNAYVKKGILDEAAKVFELIDEK-----D----IVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVI 486 (838)
Q Consensus 416 ~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 486 (838)
+......|...|++++|...|++..+- + ..+|+.+...|.+.|++++|+..|++.... .|
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~--------- 108 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT--------- 108 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH---------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH---------
Confidence 445577899999999999999866431 1 457889999999999999999999887651 10
Q ss_pred HHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HHHHHHHHHHH
Q 046257 487 NACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK-GNIESASEVFKRQRK-----RD----LVSWNSMICGY 556 (838)
Q Consensus 487 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~ 556 (838)
.. ++...+ ..+++.+..+|.+. |++++|...|++... .+ ..+|+.+...|
T Consensus 109 ----~~-g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 109 ----HR-GQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp ----HT-TCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----Hc-CCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 00 111111 23455677788886 999999999987651 12 35688999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCChh------HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc------hHHHHH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEFDGI------TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME------HYSCMV 624 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~pd~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~------~y~~lv 624 (838)
...|++++|++.|++..+........ ++..+..++...|++++|...|+... .+.|+.. .+..++
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~ 245 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLI 245 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHH
Confidence 99999999999999999943222221 46777788889999999999999887 3445432 133345
Q ss_pred HHHH--hcCCHHHHHHHHhhC
Q 046257 625 DLYS--RAGMLEKAMDIINRM 643 (838)
Q Consensus 625 ~~l~--r~G~~~~A~~~~~~m 643 (838)
..+. ..+++++|.+.++++
T Consensus 246 ~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 246 DAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHHHhccC
Confidence 5554 567899999999887
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=1.9e-06 Score=87.58 Aligned_cols=235 Identities=9% Similarity=0.023 Sum_probs=159.9
Q ss_pred HHHcCCHHHHHHHHHhcCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHH
Q 046257 423 YVKKGILDEAAKVFELIDEKDIV-AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQ 501 (838)
Q Consensus 423 y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 501 (838)
..-.|.+..+..-...+...+.. .-.-+.++|...|++... ..-.|....+..+..-. .. + +..
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~-~----a~~ 87 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT-K----NIE 87 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT-T----CCH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc-c----HHH
Confidence 34467777777755555432222 223345778878876632 11233332333222222 22 2 333
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 502 FHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRK-----RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
.+...+..+ .++......+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+
T Consensus 88 ~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-- 164 (310)
T 3mv2_B 88 ELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-- 164 (310)
T ss_dssp HHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 444444443 34445556788899999999999999998742 3556778889999999999999999999988
Q ss_pred CCC-----ChhHHHHHHHH--HhccC--CHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 046257 577 LEF-----DGITFIGVITA--CTHAG--LVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAA 647 (838)
Q Consensus 577 ~~p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~ 647 (838)
..| +..+...+..+ ....| +.++|..+|+++...+ |+......+..++.+.|++++|++.++.+
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l---- 237 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELL---- 237 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHH----
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 677 35566666655 33334 8999999999997543 44223334445899999999999999865
Q ss_pred CHHHHHHHHHHHHHhcc----------CCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 648 SATVWRTVLAACRLISL----------QPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 648 ~~~~w~~ll~~c~~~~l----------~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
+++ +|+|+.++..++.++...|+ +|.++++++++.
T Consensus 238 --------------~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 --------------LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp --------------HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred --------------HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 333 58899999888888888897 899999999874
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=1.7e-07 Score=96.60 Aligned_cols=161 Identities=10% Similarity=-0.012 Sum_probs=131.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH-HH
Q 046257 512 NNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFI-GV 587 (838)
Q Consensus 512 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~l 587 (838)
+.+......+...+...|++++|...|++.. +.+...+..+...|...|++++|++.|++... ..|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 4445556667778889999999999999875 45778899999999999999999999999987 467654332 23
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCC
Q 046257 588 ITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQP 666 (838)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P 666 (838)
...+...|..++|...++..... .| +...+..+..+|...|++++|.+.++++ ++.+|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~------------------l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGH------------------LRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------Hhccc
Confidence 33466777888899999888744 45 4577888999999999999999999987 78889
Q ss_pred CC--chhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 667 HD--SAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 667 ~~--~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
++ ..++..|+.+|...|+.++|...+++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 87 889999999999999999998877654
No 97
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.66 E-value=2e-06 Score=92.59 Aligned_cols=228 Identities=10% Similarity=0.048 Sum_probs=148.2
Q ss_pred HHHHHHcCCChHHHHHHHHhccc----CCC----eeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhC
Q 046257 321 LMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQ 392 (838)
Q Consensus 321 Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 392 (838)
....+...|++++|...|++... .++ ...+..+...|...|++++|+..+.+..+.-...+....
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 179 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------- 179 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-------
Confidence 44556788999999999988753 122 245778888999999999999999887763111000000
Q ss_pred CCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHH
Q 046257 393 PAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE-----KD----IVAWSAMLAGYAQIGDTEGA 463 (838)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 463 (838)
....+++.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|
T Consensus 180 ------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 180 ------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0012335688889999999999998876543 11 24677888889999999999
Q ss_pred HHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 046257 464 VKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR- 542 (838)
Q Consensus 464 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~- 542 (838)
++.|++.....- +.+.+....++..+...|.+.|++++|...+++..
T Consensus 242 ~~~~~~al~~~~--------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 242 VEHFQKAAKVSR--------------------------------EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHH--------------------------------HHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------------------------------hhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999888764100 00111113344456667778888888887777543
Q ss_pred ------CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 543 ------KRD-LVSWNSMICGYAQHGH---TKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 543 ------~~~-~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.+. ...++.+...|...|+ .++|+..+++ .+..|+ ...+..+...+...|+.++|..+|+...
T Consensus 290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111 2345555556666677 6677776665 223333 2345567777888888888888887765
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.58 E-value=4.9e-07 Score=91.70 Aligned_cols=192 Identities=10% Similarity=0.059 Sum_probs=134.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHH
Q 046257 442 KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSAL 521 (838)
Q Consensus 442 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 521 (838)
.+...+-.+...+.+.|++++|+..|+++... .|+.... ...+..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~--------------------------------~~a~~~l 58 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWA--------------------------------ADAQFYL 58 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTH--------------------------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcch--------------------------------HHHHHHH
Confidence 34455666777888889999999999888764 3432111 1222334
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CC----CHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCh-hHH--
Q 046257 522 VTMYSKKGNIESASEVFKRQR--KR----DLVSWNSMICGYAQ--------HGHTKKALEVFKEMRRQDLEFDG-ITF-- 584 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~--~~----~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~-~t~-- 584 (838)
...|.+.|++++|...|++.. .| ....|..+..+|.. .|++++|+..|++..+ ..|+. ...
T Consensus 59 g~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 136 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDA 136 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHH
Confidence 556778888999988888765 22 13467777888888 8999999999999988 45653 233
Q ss_pred ---------------HHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc----------CCHHHHHH
Q 046257 585 ---------------IGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA----------GMLEKAMD 638 (838)
Q Consensus 585 ---------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~----------G~~~~A~~ 638 (838)
..+...+...|++++|...|+.+++.+.-.| ....+..+..+|.+. |++++|.+
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 4557788899999999999999986542212 123566777888766 89999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHhccCCCCch---hHHHHHHHHHhcCCchH
Q 046257 639 IINRMPFAASATVWRTVLAACRLISLQPHDSA---IYVLLSNMYAATGHWQE 687 (838)
Q Consensus 639 ~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~---~y~~l~~~y~~~g~~~~ 687 (838)
.++++ ++..|+++. ++..+..++...|+.++
T Consensus 217 ~~~~~------------------~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 217 LYERL------------------LQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHH------------------HHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH------------------HHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 99987 677887753 44555666555555444
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=4e-07 Score=104.05 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFK 570 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 570 (838)
++++.+...+..+++.. +.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66777887777776653 3356778888889999999999999998765 4467888999999999999999999999
Q ss_pred HHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhc---CCHHHHHHHHhhCCC
Q 046257 571 EMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRA---GMLEKAMDIINRMPF 645 (838)
Q Consensus 571 ~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~---G~~~~A~~~~~~m~~ 645 (838)
+..+ ..|+ ...+..+..++...|++++|.+.++...+. .| +...+..+..++.+. |+.++|.+.+++.
T Consensus 82 ~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a-- 154 (568)
T 2vsy_A 82 QASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA-- 154 (568)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH--
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH--
Confidence 9988 4565 567888888899999999999999988743 34 346778888889888 9999999999887
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 646 AASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 646 ~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
++.+|++...|..++
T Consensus 155 ----------------l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 ----------------VAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----------------HHHTCCCSCHHHHTT
T ss_pred ----------------HhcCCcccChHHHhC
Confidence 788998888887776
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.57 E-value=5.7e-07 Score=91.84 Aligned_cols=196 Identities=12% Similarity=0.148 Sum_probs=119.8
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhcC------CCCCC-HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhc------
Q 046257 444 IVAWSAMLAGYAQIGDTEGAVKIYRQLTSE------GVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSIKAK------ 510 (838)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~------ 510 (838)
..+|..+...|...|++++|+..|++.... +-.|. ..++..+-..+... +.++.+...+..+++..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCC
Confidence 346777777777888888888877776643 11222 23455555555565 77777777666665431
Q ss_pred -CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 046257 511 -LNNALCVSSALVTMYSKKGNIESASEVFKRQRK-------R----DLVSWNSMICGYAQHGHTKKALEVFKEMRRQ--- 575 (838)
Q Consensus 511 -~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 575 (838)
.+.....+..+...|...|++++|...|++... + ...+|..+...|...|++++|++.|++..+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122355667788888888999988888876541 1 2456788888888999999999999888763
Q ss_pred ----CCCCChh-HHHHHHHHHhccCC------HHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 576 ----DLEFDGI-TFIGVITACTHAGL------VDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 576 ----g~~pd~~-t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
...|... .+..+.......+. +.++..+++... ...| ....+..+..+|.+.|++++|.+++++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1233332 33333333333222 223333322211 0112 2346788899999999999999999865
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.54 E-value=8.6e-07 Score=90.10 Aligned_cols=185 Identities=11% Similarity=0.095 Sum_probs=126.5
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 046257 432 AAKVFELIDE---KDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIK 508 (838)
Q Consensus 432 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~ 508 (838)
|...|++..+ ++..++..+..+|...|++++|++++.+....|-.++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~------------------------------ 134 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG------------------------------ 134 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT------------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC------------------------------
Confidence 5666665543 3344455666777777888888887777654332111
Q ss_pred hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-----CHHHHHHHHHH--HHHcC--ChHHHHHHHHHHHHcCC
Q 046257 509 AKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KR-----DLVSWNSMICG--YAQHG--HTKKALEVFKEMRRQDL 577 (838)
Q Consensus 509 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-----~~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~ 577 (838)
+......++..|.+.|+.+.|.+.+++|. .| +-.+...|..+ ....| +..+|..+|+++.+ -
T Consensus 135 -----~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~ 207 (310)
T 3mv2_B 135 -----TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--T 207 (310)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--T
T ss_pred -----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--h
Confidence 22333446778999999999999999887 45 24555556656 33334 89999999999977 4
Q ss_pred CCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCC----c---cC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 578 EFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHH----I---YP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 578 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~---~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
.|+..+-..++.++.+.|++++|.+.++.+.+.+. . .| ++.++..+|.+....|+ +|.++++++
T Consensus 208 ~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL------ 279 (310)
T 3mv2_B 208 FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL------ 279 (310)
T ss_dssp SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH------
T ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH------
Confidence 56644445556688999999999999997764321 0 23 45566566777777887 899999887
Q ss_pred HHHHHHHHHHHHhccCCCCchhHH
Q 046257 650 TVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
.+.+|+++.+..
T Consensus 280 ------------~~~~P~hp~i~d 291 (310)
T 3mv2_B 280 ------------VKLDHEHAFIKH 291 (310)
T ss_dssp ------------HHTTCCCHHHHH
T ss_pred ------------HHhCCCChHHHH
Confidence 678888876543
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.53 E-value=6e-06 Score=85.89 Aligned_cols=131 Identities=6% Similarity=-0.040 Sum_probs=77.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
+|+.+...|.+.|++++|+..|++.... +... ++.... ...++.+...|
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~-g~~~~~---------------a~~~~~lg~~~ 126 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVM---------------YVEN-GTPDTA---------------AMALDRAGKLM 126 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHH---------------HHTT-TCHHHH---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH---------------HHHc-CCHHHH---------------HHHHHHHHHHH
Confidence 4566677788888888888888776531 0001 111100 12334455566
Q ss_pred HhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHH
Q 046257 526 SKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD-GITFIGVITAC 591 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~ 591 (838)
.+ |++++|...|++... .+ ..+|+.+...|...|++++|++.|++..+. +..++ ..++..+..++
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 66 888888777765541 11 346777777777888888888888777662 11111 12444555555
Q ss_pred hccCCHHHHHHHHHHHH
Q 046257 592 THAGLVDEGQQYFDIMV 608 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~ 608 (838)
...|++++|...|+...
T Consensus 206 ~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHh
Confidence 56677777777777664
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=3.9e-06 Score=86.64 Aligned_cols=164 Identities=10% Similarity=0.000 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-Ch----hHHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKR---DL------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DG----ITFIG 586 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~----~t~~~ 586 (838)
.+..+.+.|++++|.+++++.... +. ..+..+...|...|++++|++.|++..+..... |. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 366788999999999999886521 11 133446677777889999999999999843332 22 26888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcC----CccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEH----HIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
+..++...|++++|..+|+.+.+.. +..+. ...|..+...|.+.|++++|.+.+++.- .-+.-
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al------------~~~~~ 228 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI------------EISCR 228 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHH
Confidence 9999999999999999999987422 11122 2367889999999999999999998761 01110
Q ss_pred hccCCCCchhHHHHHHHHHhcCC-chHHHHHHHHHh
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGH-WQERARVRKLMN 696 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~-~~~a~~~~~~m~ 696 (838)
....+.-+..|..++.+|...|+ +++|.+.+++..
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11122236789999999999995 599998887764
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=7.8e-07 Score=78.68 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMV 624 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 624 (838)
..|......|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|++++|...|+..++. .|+ ...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL---DSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---hhhhhHHHHHHH
Confidence 4577788899999999999999999988 4565 567888888999999999999999988743 453 56788899
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
.+|...|++++|.+.+++. ++++|+++.++..|.+++
T Consensus 89 ~~~~~~~~~~~A~~~~~~a------------------l~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDA------------------LQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHH------------------HHHCcCCHHHHHHHHHhc
Confidence 9999999999999999987 889999999888887653
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.48 E-value=1.3e-06 Score=85.32 Aligned_cols=139 Identities=10% Similarity=0.103 Sum_probs=73.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
+...|.+.|++++|.+.|++..+++...|..+...|...|++++|++.|++..+. .|+ ...+..+..++...|++++
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHHH
Confidence 3444555555555555555555445555555555555555555555555555542 232 2334444444444444444
Q ss_pred HHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 600 GQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
|.+.|+...+.. |+..... +.... ....|..+..+..++.+|
T Consensus 90 A~~~~~~al~~~---~~~~~~~------------------~~~~~-----------------~~~~~~~~~~~~~l~~~~ 131 (213)
T 1hh8_A 90 AIKDLKEALIQL---RGNQLID------------------YKILG-----------------LQFKLFACEVLYNIAFMY 131 (213)
T ss_dssp HHHHHHHHHHTT---TTCSEEE------------------CGGGT-----------------BCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCccHHH------------------HHHhc-----------------cccCccchHHHHHHHHHH
Confidence 444444443211 1110000 00000 123344458999999999
Q ss_pred HhcCCchHHHHHHHHHhhCC
Q 046257 680 AATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 680 ~~~g~~~~a~~~~~~m~~~g 699 (838)
...|++++|.+.++...+..
T Consensus 132 ~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 132 AKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHccCHHHHHHHHHHHHHcC
Confidence 99999999999999987643
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.47 E-value=4.2e-07 Score=105.90 Aligned_cols=148 Identities=11% Similarity=0.012 Sum_probs=130.3
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 526 SKKGNIESASEVFKRQR-----------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
...|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 56788999998888764 45678899999999999999999999999999 5675 4678888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
.|++++|.+.|++..+. .| +...|..+..+|.+.|++++ ++.+++. ++++|+++.+|
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a------------------l~~~P~~~~a~ 537 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTV------------------WSTNDGVISAA 537 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHH------------------HHHCTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHH------------------HHhCCchHHHH
Confidence 99999999999998843 46 45678899999999999999 9999987 88999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 673 VLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 673 ~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..++.+|...|++++|.+.+++..+
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 9999999999999999999987654
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.47 E-value=2.1e-06 Score=83.66 Aligned_cols=167 Identities=15% Similarity=0.078 Sum_probs=114.8
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 046257 449 AMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK 528 (838)
Q Consensus 449 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~ 528 (838)
.....+.+.|++++|+..|++.... .|+......... .... ........+.+...|.+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-~~~~------------------~~~~~~~~~~lg~~~~~~ 67 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTN-VDKN------------------SEISSKLATELALAYKKN 67 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHH-SCTT------------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhh-hcch------------------hhhhHHHHHHHHHHHHHC
Confidence 3445667889999999999988763 454432211111 1111 011123344577889999
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCC--HHHHHH
Q 046257 529 GNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGL--VDEGQQ 602 (838)
Q Consensus 529 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~--~~~a~~ 602 (838)
|++++|...|++.. +.+...|..+...|...|++++|++.|++.++ +.|+ ..++..+..++...|. .+++..
T Consensus 68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999875 55788999999999999999999999999999 6776 4567777777765543 344455
Q ss_pred HHHHHHhcCCccCCCch--HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 603 YFDIMVNEHHIYPTMEH--YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 603 ~~~~m~~~~~~~p~~~~--y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++... .|+... +..+...+...|++++|.+.+++.
T Consensus 146 ~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 146 DYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 554443 344332 333456677789999999999987
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.47 E-value=4.6e-06 Score=81.44 Aligned_cols=160 Identities=9% Similarity=-0.031 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQHG----HTKKALEVFKEMRRQDLEFDGITFIGVI 588 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll 588 (838)
++.....|..+|...|++++|.+.|++.. ..+...+..|...|.. | +.++|++.|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 56666777888889999999999999876 4577888889888888 6 8999999999998865 566777788
Q ss_pred HHHhc----cCCHHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 046257 589 TACTH----AGLVDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSR----AGMLEKAMDIINRMPFAASATVWRTVLA 657 (838)
Q Consensus 589 ~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r----~G~~~~A~~~~~~m~~~~~~~~w~~ll~ 657 (838)
..+.. .+++++|.++|+... +. .|. +..+..|..+|.. .+++++|.+.+++.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~-~~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-------------- 155 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAA-RD--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS-------------- 155 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHT-SS--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH--------------
T ss_pred HHHHcCCCCccCHHHHHHHHHHHH-Hc--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--------------
Confidence 88877 889999999999987 32 332 5678888899988 88999999999986
Q ss_pred HHHHhccCCCCchhHHHHHHHHHhc-C-----CchHHHHHHHHHhhCC
Q 046257 658 ACRLISLQPHDSAIYVLLSNMYAAT-G-----HWQERARVRKLMNDRK 699 (838)
Q Consensus 658 ~c~~~~l~P~~~~~y~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g 699 (838)
.++ |.++.++..|+.+|... | ++++|..++++..+.|
T Consensus 156 ----~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 ----SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp ----HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred ----HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 344 56788999999999865 3 8999999999988765
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=4.7e-06 Score=81.18 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=98.8
Q ss_pred HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHH
Q 046257 488 ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKK 564 (838)
Q Consensus 488 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 564 (838)
.+... +.++.+...+..+ ++++...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++
T Consensus 15 ~~~~~-~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 15 LAADK-KDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHT-TCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHh-CCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 34445 8888888887766 35678899999999999999999999998765 5577899999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 565 ALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 565 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|++.|++..+ ..|+..... +...| ....|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 90 A~~~~~~al~--~~~~~~~~~-----~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 90 AIKDLKEALI--QLRGNQLID-----YKILG---------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHH--TTTTCSEEE-----CGGGT---------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCccHHH-----HHHhc---------------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998 445432100 00001 012232 356777889999999999999999987
No 110
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=3.1e-06 Score=73.91 Aligned_cols=116 Identities=16% Similarity=0.306 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
...|..+...|...|++++|++.|+++.+. .| +..++..+...+...|++++|..+|+.+.+.. +.+...+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHH
Confidence 567888888888999999999999998874 34 45677788888888999999999998887432 22456777888
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g 683 (838)
..|.+.|++++|.+.++++ ++++|+++..+..++.++...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKA------------------LELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999887 6778888888888888877654
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.42 E-value=9.7e-05 Score=81.92 Aligned_cols=388 Identities=12% Similarity=0.050 Sum_probs=204.2
Q ss_pred hCC-ChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-hHHHHHHH
Q 046257 125 RTN-NVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI-VATAVQVH 202 (838)
Q Consensus 125 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~l~ 202 (838)
+.| +++.|+.+|+.+. ..+-. |+++.+..+|++.... .|+...|..-++...+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 3677777776643 22221 8899999999988763 4788888777777665553 35567788
Q ss_pred HHHHHh-CC-CCchhHHHHHHHHhHc----CCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCC
Q 046257 203 TMVIKN-GG-EVVTSVCNALISMYLK----SKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGA 276 (838)
Q Consensus 203 ~~~~~~-g~-~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (838)
+.++.. |. ..+..+|...+..+.. .|+++.++++|+....--...+..+-. .|..+...
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~-------------~Y~~fE~~-- 136 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWK-------------DFENFELE-- 136 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHH-------------HHHHHHHH--
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHH-------------HHHHHHHH--
Confidence 887775 43 3356777777776543 356777888887654311111111111 11111111
Q ss_pred CCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHcCC--C-----hHHHHHHHHhccc--CCCe
Q 046257 277 ELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLMVAYSKCG--K-----MEDASKIFSMMRE--MKDV 347 (838)
Q Consensus 277 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g--~-----~~~A~~~f~~~~~--~~~~ 347 (838)
.+..+...++... .+.+..|+.++..+...-...+...|...++.-...+ - .+.+..+|++... ..+.
T Consensus 137 -~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 137 -LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp -HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred -hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 0111111222111 1233444555444432210113335555555433221 1 2345667777653 3456
Q ss_pred eehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcC
Q 046257 348 VSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKG 427 (838)
Q Consensus 348 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g 427 (838)
..|-..+.-+.+.|+.++|..+|++.... |+...+......+.... ++ +..+...+...
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~--~~---------------~~~l~~~~~~~- 272 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE--AV---------------YGDLKRKYSMG- 272 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT--HH---------------HHHHHHHTC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh--HH---------------HHHHHHHHHhh-
Confidence 67888888888899999999999999887 65543321111000000 00 11111111000
Q ss_pred CHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHH--HHHHHhcCChhhHHHHHHHHHH
Q 046257 428 ILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFS--SVINACTAPSAAVEQGKQFHAC 505 (838)
Q Consensus 428 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~~~~~~ 505 (838)
..+.+.. .........|-..+..+.+.+..+.|..+|.+. ... ..+...|. +.+... ..++.+.++.++..
T Consensus 273 ~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~--~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 273 EAESAEK---VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY--ATGSRATPYNIFSS 345 (493)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH--HHCCSHHHHHHHHH
T ss_pred ccchhhh---hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH--HCCChHHHHHHHHH
Confidence 0000000 000011245666666666677788888888888 211 12222232 111111 11246777777777
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 046257 506 SIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRR 574 (838)
Q Consensus 506 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 574 (838)
.++.. +.++..+...++...+.|+.+.|+.+|+++. +....|...+.-=..+|+.+.+.++++++..
T Consensus 346 al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77653 3344556667777778888888888888874 3566777777766777777777777777664
No 112
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=2.2e-06 Score=76.04 Aligned_cols=118 Identities=12% Similarity=0.030 Sum_probs=99.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHH
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYS 621 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~ 621 (838)
.+...|..+...+...|++++|++.|++..+ ..| +...+..+...+...|++++|.++++...+. .| +...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EPTFIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCchHHHH
Confidence 3567788899999999999999999999988 455 4567888888899999999999999998753 34 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGH 684 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~ 684 (838)
.+..+|.+.|++++|.+.+++. ++++|++...+..++.+|...|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~------------------~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKA------------------LDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHH------------------HHhCCCchHHHHHHHHHHHHhcC
Confidence 8899999999999999999987 67889899999999999887764
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.41 E-value=6.5e-07 Score=81.83 Aligned_cols=100 Identities=8% Similarity=0.034 Sum_probs=67.1
Q ss_pred CCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
+.|+. ..+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----------- 81 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG----------- 81 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------
Confidence 34443 34555556666677777777777666532 33 3445666677777777777777777765
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 82 -------l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 82 -------AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777777777777777776654
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=1.7e-06 Score=76.46 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=89.0
Q ss_pred CCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
+.|+. ..+......+.+.|++++|.+.|+..++. .| +...|..+..+|.+.|++++|++.+++.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----------- 73 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTC----------- 73 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH-----------
Confidence 56663 56778889999999999999999998843 45 4678888999999999999999999987
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 74 -------l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 74 -------IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp -------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998875
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=1.3e-06 Score=92.15 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----------------ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+...|..+...|.+.|++++|++.|++.++ +.|+. .++..+..++...|++++|...|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788889999999999999999999998 45654 688889999999999999999999988
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
+. .| +...|..+..+|.+.|++++|.+.+++. ++++|+++.++..++.+|...|++++
T Consensus 224 ~~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------l~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 224 EL---DSNNEKGLSRRGEAHLAVNDFELARADFQKV------------------LQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred Hh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 35 4567888999999999999999999987 88999999999999999999999999
Q ss_pred H-HHHHHHHh
Q 046257 688 R-ARVRKLMN 696 (838)
Q Consensus 688 a-~~~~~~m~ 696 (838)
| ...++.|-
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9 44566553
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.38 E-value=2e-06 Score=78.59 Aligned_cols=101 Identities=10% Similarity=0.062 Sum_probs=86.6
Q ss_pred CCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 046257 577 LEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRT 654 (838)
Q Consensus 577 ~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ 654 (838)
+.|+. ..+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a----------- 96 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVA----------- 96 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHH-----------
Confidence 55654 46777788888999999999999998843 45 4567888999999999999999999987
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 97 -------l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 97 -------FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -------HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999988763
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.37 E-value=9.5e-06 Score=83.40 Aligned_cols=174 Identities=6% Similarity=-0.021 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhc
Q 046257 431 EAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAK 510 (838)
Q Consensus 431 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 510 (838)
.....++.....+...+..+...+.+.|++++|+..|++.... .|+
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~-------------------------------- 149 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ-------------------------------- 149 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS--------------------------------
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc--------------------------------
Confidence 3344444444344455666777778888888888888877652 333
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHH
Q 046257 511 LNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNS-MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIG 586 (838)
Q Consensus 511 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ 586 (838)
+...+..|...|.+.|++++|...++++. .|+...+.. ....+...|+.++|++.|++..+ ..|+ ...+..
T Consensus 150 ---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~ 224 (287)
T 3qou_A 150 ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQ 224 (287)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHH
Confidence 23344456677889999999999999987 455443333 33347778888999999999998 4666 567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..++...|++++|...|..+.+...-..+...+..++.+|...|+.++|...+++.
T Consensus 225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 899999999999999999999854321122557889999999999999999888763
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.37 E-value=4.5e-06 Score=77.37 Aligned_cols=129 Identities=9% Similarity=0.045 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMV 624 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 624 (838)
...|..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|..+++...+.. +.+...+..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHH
Confidence 346777888888999999999999998884 45 45677788888889999999999999887442 22456788888
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH--HHHHHhcCCchHHHHHHHHHh
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL--SNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l--~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.+.|++++|.+.+++. ++++|+++..+..+ +..+...|++++|.+.+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETV------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999987 67888888877444 444888899999999887664
No 119
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.35 E-value=4.7e-06 Score=73.44 Aligned_cols=119 Identities=11% Similarity=0.025 Sum_probs=98.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 622 (838)
+...|..+...+...|++++|++.|++.... .| +...+..+...+...|++++|.++++...+. .| +...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHH
Confidence 3456778888888999999999999998884 45 4567778888888999999999999988743 34 3567788
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCch
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQ 686 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~ 686 (838)
+...+.+.|++++|.+.+++. ++++|+++..+..++.+|...|+++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~------------------~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKA------------------LELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHHH------------------HhcCccchHHHHHHHHHHHHHhcCC
Confidence 889999999999999999987 6788989999999999999888763
No 120
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=4.2e-07 Score=87.80 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=110.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------
Q 046257 521 LVTMYSKKGNIESASEVFKRQRK---RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG---------------- 581 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---------------- 581 (838)
.+......|++++|.+.++.... .....|..+...+...|++++|++.|++..+ +.|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHH
Confidence 34445566777777777654331 2445688888999999999999999999998 34432
Q ss_pred -hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 582 -ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 582 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
..+..+..++...|++++|...++...+. .| +...+..+..+|...|++++|.+.+++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a---------------- 148 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKA---------------- 148 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHH----------------
Confidence 57788888999999999999999998854 34 4567888899999999999999999987
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCCchHHH-HHHHHHh
Q 046257 660 RLISLQPHDSAIYVLLSNMYAATGHWQERA-RVRKLMN 696 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~-~~~~~m~ 696 (838)
++++|+++.++..++.++...|+.+++. ..++.|-
T Consensus 149 --l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 149 --ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp --HHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999998888877 4444443
No 121
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.33 E-value=3.7e-06 Score=95.96 Aligned_cols=148 Identities=8% Similarity=-0.000 Sum_probs=109.0
Q ss_pred cCCchHHHHHHHHhhcCCCCCC-HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPN-EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESAS 535 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 535 (838)
.|++++|++.|++..+. .|+ ...+..+-..+... ++++.+...+...++.. +.+...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 57899999999998764 455 45566666666666 99999999999998865 345778888999999999999999
Q ss_pred HHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc---CCHHHHHHHHHHHH
Q 046257 536 EVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHA---GLVDEGQQYFDIMV 608 (838)
Q Consensus 536 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~---g~~~~a~~~~~~m~ 608 (838)
+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++... |+.++|.+.++...
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999765 45778999999999999999999999999999 4565 56788888899999 99999999999988
Q ss_pred hc
Q 046257 609 NE 610 (838)
Q Consensus 609 ~~ 610 (838)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.33 E-value=5.7e-06 Score=80.45 Aligned_cols=153 Identities=9% Similarity=0.038 Sum_probs=115.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CC-CHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC-h
Q 046257 522 VTMYSKKGNIESASEVFKRQR--KR-DLVSWNS----------------MICGYAQHGHTKKALEVFKEMRRQDLEFD-G 581 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~ 581 (838)
...+.+.|++++|...|++.. .| +...|.. +...|...|++++|+..|++.++ +.|+ .
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 345678899999999998876 33 3456666 88999999999999999999999 5676 5
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCC--HHHHHHHHhhCCCCCCHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGM--LEKAMDIINRMPFAASATVWRTVLAA 658 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~--~~~A~~~~~~m~~~~~~~~w~~ll~~ 658 (838)
..+..+..++...|++++|...|+...+. .|+ ...+..+...|...|+ .+++...+++.. .|+..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------- 156 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKM-------- 156 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCch--------
Confidence 67888899999999999999999999843 464 5678888888876654 445666666652 22221
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 659 CRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 659 c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
...+..++..+...|++++|...+++..+.
T Consensus 157 ----------~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 157 ----------QYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp ----------HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred ----------hHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 123455677788899999999999988753
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.32 E-value=8.9e-06 Score=76.64 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=112.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.+..+...+.+.|++++|+..|++..+. .|+ +...+..+...|
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~-----------------------------------~~~a~~~la~~~ 50 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQS-----------------------------------RGDVKLAKADCL 50 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHT-----------------------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC-----------------------------------cHHHHHHHHHHH
Confidence 3455666777888888888888877642 233 233444556678
Q ss_pred HhcCCHHHHHHHHHhcC--CCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHH
Q 046257 526 SKKGNIESASEVFKRQR--KRDLVSWNSMICG-YAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQ 601 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~ 601 (838)
.+.|++++|...|++.. .|+...+..+... +...+...+|++.|++..+ ..|+ ...+..+..++...|++++|.
T Consensus 51 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 51 LETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp HHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHH
Confidence 88999999999999886 3344433332212 2233344468999999998 5676 567888888999999999999
Q ss_pred HHHHHHHhcCCccCC---CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 602 QYFDIMVNEHHIYPT---MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 602 ~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|+.+.+. .|+ ...+..+..+|...|+.++|...+++.
T Consensus 129 ~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 129 ELLWNILKV---NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 999998833 454 447888999999999999999998864
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=3.2e-06 Score=86.67 Aligned_cols=159 Identities=12% Similarity=0.013 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ +.|+ ...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3344445555555555555555443 22455555555555555666666665555555 3443 2344555555555
Q ss_pred cCCHHHHHHHHHHHHhcC-----------------------------CccCCCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 594 AGLVDEGQQYFDIMVNEH-----------------------------HIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~-----------------------------~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
.|++++|...|+...+.. ...++......+..++ .|+.++|.+.+++
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~-- 160 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQR-- 160 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSG--
T ss_pred cCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHh--
Confidence 556666655555544221 1112222222221111 2344444444433
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHhhC
Q 046257 645 FAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAAT-GHWQERARVRKLMNDR 698 (838)
Q Consensus 645 ~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~ 698 (838)
.++++|++......+..++... +++++|.+++....+.
T Consensus 161 ----------------al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 161 ----------------NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp ----------------GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred ----------------hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3678898888888888888887 7899999999988653
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=1.4e-05 Score=82.46 Aligned_cols=167 Identities=8% Similarity=-0.018 Sum_probs=119.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CC--hhH
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR---KRDL------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLE---FD--GIT 583 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---pd--~~t 583 (838)
+...+..|...|++++|.+.+++.. +... ..+..+...|...|++++|++.|++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 3445677889999999999987543 1121 23444666778889999999999999864222 11 247
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAA 658 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~ 658 (838)
++.+...+...|++++|..+|+...+.....|+. ..|..+...|.+.|++++|.+.+++.- .-
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal------------~~ 225 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI------------EI 225 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH------------HH
Confidence 8888999999999999999999887322222331 478889999999999999999999761 00
Q ss_pred HHHhccCCCCchhHHHHHHHHHhcCCchHH-HHHHHHHh
Q 046257 659 CRLISLQPHDSAIYVLLSNMYAATGHWQER-ARVRKLMN 696 (838)
Q Consensus 659 c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a-~~~~~~m~ 696 (838)
+.-....+.-+..|..++.+|...|++++| ...+++..
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 000111111266789999999999999999 77666553
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.29 E-value=9.2e-05 Score=75.93 Aligned_cols=146 Identities=10% Similarity=0.139 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC------
Q 046257 529 GNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTK--KALEVFKEMRRQDLEF-DGITFIGVITACTHAGL------ 596 (838)
Q Consensus 529 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~------ 596 (838)
++++++.++++++. ++|..+|+.-.-.+.+.|.++ ++++.++++.+. .| |...|+.-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 77889999998876 678899999888888889888 999999999995 44 45566666666666665
Q ss_pred HHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHhccC---CCCchh
Q 046257 597 VDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEK-AMDIINRMPFAASATVWRTVLAACRLISLQ---PHDSAI 671 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~-A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~---P~~~~~ 671 (838)
+++++++++.++.. .| |...|+-+..++.+.|+..+ +.++.++. ++++ |.++.+
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~------------------~~~~~~~~~s~~a 260 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQF------------------VDLEKDQVTSSFA 260 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTT------------------EEGGGTEESCHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHH------------------HhccCCCCCCHHH
Confidence 89999999988844 35 44567777788888887444 56677776 4444 888999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+..|+.+|.+.|+.++|.++++.+.+
T Consensus 261 l~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 261 LETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=2.1e-06 Score=78.50 Aligned_cols=118 Identities=9% Similarity=0.092 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAG 595 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g 595 (838)
+.+.+.+.....+.++++.++ .+.+...|..+...|.+.|++++|++.|++..+ +.|+ ...|..+..++...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 334455555544443333221 122456778888888899999999999999888 5665 567778888888899
Q ss_pred CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 596 LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 596 ~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
++++|...|+...+ +.| ++..|..+..+|.+.|++++|.+.+++.
T Consensus 85 ~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 85 QFQQAADLYAVAFA---LGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp CHHHHHHHHHHHHH---HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999988874 345 4567888888999999999999998876
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.23 E-value=6.4e-06 Score=85.68 Aligned_cols=195 Identities=7% Similarity=-0.013 Sum_probs=139.6
Q ss_pred cCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 046257 457 IGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASE 536 (838)
Q Consensus 457 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 536 (838)
.|++++|.+++++..+.. +.. + +... ++++.+...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~-~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWK-PDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCS-CCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCC-CCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 567788888888776531 111 0 1112 5566666555443 456888999999999
Q ss_pred HHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHhccCCHHHHHH
Q 046257 537 VFKRQR-----KRD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDL---EFD--GITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 537 ~f~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
.|.+.. ..+ ..+|+.+...|...|++++|++.|++..+.-. .|. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 887654 112 35788999999999999999999998876311 122 2467788888888 99999999
Q ss_pred HHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC------chhH
Q 046257 603 YFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD------SAIY 672 (838)
Q Consensus 603 ~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~------~~~y 672 (838)
+|+.....+.-..+ ...+..+..+|.+.|++++|.+.+++. +++.|++ ...+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~~~~~~~~~~~~~~~ 198 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE------------------KSMYKEMENYPTCYKKC 198 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHHHHcCChhHHHHHH
Confidence 99988743211111 346778899999999999999999986 3333322 2367
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHh
Q 046257 673 VLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 673 ~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
..++.+|...|++++|...+++..
T Consensus 199 ~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 199 IAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 778888999999999999999876
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=6e-06 Score=79.59 Aligned_cols=160 Identities=12% Similarity=-0.025 Sum_probs=112.8
Q ss_pred HhcCCHHHHHH---HHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHhccCCH
Q 046257 526 SKKGNIESASE---VFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ----DLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 526 ~k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
...|++++|.+ .+..-+......|+.+...|...|++++|+..|++..+. |..|. ..++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35789999999 665533445678999999999999999999999988762 22222 35677788889999999
Q ss_pred HHHHHHHHHHHhcCCccC-C----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 598 DEGQQYFDIMVNEHHIYP-T----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p-~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
++|..+++.......-.+ + ...+..+...+...|++++|.+.+++.- ..++-..-.+.-...+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------~~~~~~~~~~~~~~~~ 150 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL------------VYAQQADDQVAIACAF 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------HHHHhccchHHHHHHH
Confidence 999999998764422122 1 2347778899999999999999998751 0000000000012346
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 673 VLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 673 ~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..++.+|...|++++|.+.+++..+
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7899999999999999998887754
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.22 E-value=8.5e-06 Score=73.64 Aligned_cols=94 Identities=10% Similarity=0.018 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------ 78 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYG------------------ 78 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------
Confidence 3445555666677777777777766632 34 3445666777777788888888887776
Q ss_pred hccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 662 ISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677788888888888888888888888887777654
No 131
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=5.1e-06 Score=83.27 Aligned_cols=198 Identities=9% Similarity=-0.000 Sum_probs=133.9
Q ss_pred HcCCHHHHHHHHHhcCCC---CcchHHHH-------HHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHH-HHHhcCCh
Q 046257 425 KKGILDEAAKVFELIDEK---DIVAWSAM-------LAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSV-INACTAPS 493 (838)
Q Consensus 425 ~~g~~~~A~~~f~~~~~~---~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~~ 493 (838)
..++.+.|.+.|.+..+- ....|+.+ ...+.+.++..+++..+..-. ++.|+......- ...|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~~~- 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYGDI- 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTCCC-
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccccc-
Confidence 579999999999988753 34578777 455555555555555554433 344544321111 0000000
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--KRDLVSWNSMICGYAQHGHTKKALEVFKE 571 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 571 (838)
+.-+..-..+.-.+..++...|++++|.++|+.+. .|+-.....+...+.+.|++++|+..|++
T Consensus 95 --------------~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 95 --------------TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp --------------EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred --------------ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00011112344456677889999999999999987 44434677777789999999999999986
Q ss_pred HHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 572 MRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 572 m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
... .|+. ..+..+..++...|+.++|+..|++.. .....|. .+.......++.+.|+.++|...|+++
T Consensus 161 a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 161 AGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp GGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544 2332 367778889999999999999999986 3222253 235566788899999999999999987
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=1.1e-05 Score=76.10 Aligned_cols=119 Identities=10% Similarity=0.145 Sum_probs=85.1
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHH-HHhcCCH
Q 046257 557 AQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDL-YSRAGML 633 (838)
Q Consensus 557 ~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~-l~r~G~~ 633 (838)
...|++++|++.|++..+. .| +...+..+...+...|++++|..+|+...+. .| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 3456777777777777763 34 3456677777777778888888887777633 23 34556667777 6678887
Q ss_pred --HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 634 --EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 634 --~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++|.+.++++ ++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 96 ~~~~A~~~~~~a------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 96 MTAQTRAMIDKA------------------LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888876 6778888888888888999999999998888887654
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.20 E-value=5.3e-06 Score=75.66 Aligned_cols=105 Identities=15% Similarity=0.075 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 622 (838)
+...|..+...+...|++++|+..|++... ..|+ ...+..+..++...|++++|...|+..... .| +...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---DIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCchHHHH
Confidence 455677788888899999999999999888 4564 566777888888899999999999888743 34 4567778
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhH
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIY 672 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y 672 (838)
+..+|...|++++|.+.+++. ++++|+++...
T Consensus 95 lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~ 126 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLA------------------QELIANXPEFX 126 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHHTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHHCcCCCcch
Confidence 888999999999999999876 67777666553
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=9.2e-06 Score=71.52 Aligned_cols=93 Identities=11% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLI 662 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~ 662 (838)
+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. +
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------l 65 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA------------------I 65 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH------------------H
Confidence 344444455555555555555555422 22 2345566666666777777777777665 5
Q ss_pred ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 663 SLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 663 ~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++|+++..|..++.+|...|++++|...+++..+
T Consensus 66 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 66 EKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 66777777777777777777777777777766654
No 135
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.8e-05 Score=71.51 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCc
Q 046257 544 RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD----GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TME 618 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 618 (838)
.+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|..+++...+. .| +..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHH
Confidence 4667788888889999999999999999888 5676 466777888888999999999999888743 34 455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
.+..+..+|.+.|++++|.+.+++. ++++|+++..+..+..+...
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRC------------------VSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HHcCCCcHHHHHHHHHHHhh
Confidence 6778888999999999999999876 67788887777776666543
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.14 E-value=4.8e-06 Score=92.32 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=91.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHh
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSR 629 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r 629 (838)
+...|.+.|++++|++.|++..+ ..|+ ..++..+..++...|++++|.+.+++..+. .| +...|..+..+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 34455677888888888888888 4565 567778888888888888888888888743 34 34677888889999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH--HHhcCCchHHHHHHHH
Q 046257 630 AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM--YAATGHWQERARVRKL 694 (838)
Q Consensus 630 ~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~--y~~~g~~~~a~~~~~~ 694 (838)
.|++++|++.+++. ++++|+++..+..++.+ |...|++++|.+.+++
T Consensus 87 ~g~~~eA~~~~~~a------------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 87 LGKFRAALRDYETV------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HTCHHHHHHHHHHH------------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999887 77889898888888888 8888999999988773
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=2.5e-05 Score=67.15 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCM 623 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 623 (838)
...|..+...+...|++++|++.|++.... .| +...+..+...+...|++++|..+++...+. .| +...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 456777888888888999999998888874 45 4566777777888889999999988888743 34 35567778
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMY 679 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y 679 (838)
..++.+.|++++|.+.+++. ++++|+++..+..++.+.
T Consensus 79 a~~~~~~~~~~~A~~~~~~~------------------~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEG------------------LKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------HTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH------------------HHcCCCCHHHHHHHHHhh
Confidence 88899999999999998876 677777777776666553
No 138
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.12 E-value=0.00052 Score=70.28 Aligned_cols=216 Identities=9% Similarity=-0.033 Sum_probs=159.4
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC--ChhhHHHHHHHHHHhCCCCChhHHHHHHHHH----HhC-
Q 046257 54 CRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF--DHVFGRQVHCECVKSGFARDVNVSTSLVDLY----MRT- 126 (838)
Q Consensus 54 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~- 126 (838)
......++|+.+++.++... |-+...|+.--......+ +++++....+.++...+ .+..+|+.--..+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhcc
Confidence 34445578999999998764 333445666656666677 99999999999988763 4555666554444 455
Q ss_pred --CChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCch--HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-----
Q 046257 127 --NNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMND--RVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI----- 194 (838)
Q Consensus 127 --g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~----- 194 (838)
++++++...++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 789999999988764 56778888888888888888 999999999887654 66777776666666665
Q ss_pred -hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhH-HHHHHhcCCC------CCcchHHHHHHHHHhCCChHHHHH
Q 046257 195 -VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRD-ARAVFDGMED------RDSITWNSMVAGYVTNELHMEAFE 266 (838)
Q Consensus 195 -~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~~m~~------~~~~~~n~li~~~~~~g~~~~A~~ 266 (838)
++++.+....+++.. +.|...|+-+-..+.+.|+... +..+++++.+ ++...+..+...|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 788888888888876 6778888888888888877444 4455555432 355667777778888888888888
Q ss_pred HHHHhhh
Q 046257 267 TFNNMGL 273 (838)
Q Consensus 267 l~~~m~~ 273 (838)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888764
No 139
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.12 E-value=6.9e-05 Score=73.72 Aligned_cols=133 Identities=11% Similarity=0.049 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-ch
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-EH 619 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~ 619 (838)
+...+..+...+...|++++|+..|+++.+. .|+. ..+..+..++...|++++|...|+...+.+.-.|.. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3445667788899999999999999999984 4542 467778889999999999999999998654222221 13
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchh----------
Q 046257 620 YSCMVDLYSR------------------AGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAI---------- 671 (838)
Q Consensus 620 y~~lv~~l~r------------------~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~---------- 671 (838)
+..+...+.+ .|++++|.+.+++. ++..|+++..
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~------------------l~~~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL------------------VRGYPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH------------------HTTCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH------------------HHHCcCChhHHHHHHHHHHH
Confidence 3344444443 67899999999876 4444444433
Q ss_pred -------HHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 672 -------YVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 672 -------y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
...++.+|...|++++|...++.+.+
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 175 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR 175 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 35788999999999999999999876
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.11 E-value=2.8e-05 Score=71.86 Aligned_cols=122 Identities=10% Similarity=0.039 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHh
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACT 592 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~ 592 (838)
.+..+...|...|++++|...|++.. +.+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 44556677889999999999998765 457889999999999999999999999999984 454 567888888999
Q ss_pred ccCCHHHHHHHHHHHHhcCCccCCC-chH--HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 593 HAGLVDEGQQYFDIMVNEHHIYPTM-EHY--SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 593 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~y--~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|++++|.++|+...+. .|+. ..+ ..++..+.+.|++++|.+.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999998854 3432 333 33445577889999999998764
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=7e-06 Score=77.35 Aligned_cols=125 Identities=9% Similarity=0.100 Sum_probs=92.7
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH-HhccCCH--H
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA-CTHAGLV--D 598 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a-~~~~g~~--~ 598 (838)
...|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ +.|+ ...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ--LRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 45677888887777654 45778888899999999999999999999888 4454 4566667777 6788888 9
Q ss_pred HHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 599 EGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
+|..+|+.+.+. .|+ ...+..+...|.+.|++++|.+.++++ ++++|+++....
T Consensus 99 ~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~ 153 (177)
T 2e2e_A 99 QTRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKV------------------MDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHTCCTTSCHHH
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HhhCCCCccHHH
Confidence 999999888744 343 456777888899999999999999876 677777665443
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.07 E-value=2e-05 Score=87.32 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=91.3
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHH
Q 046257 524 MYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDE 599 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~ 599 (838)
.|.+.|++++|.+.|++.. +.+..+|..+..+|.+.|++++|++.|++..+ +.|+ ..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4678899999999998765 45688999999999999999999999999999 5676 5678888999999999999
Q ss_pred HHHHHHHHHhcCCccCC-CchHHHHHHH--HHhcCCHHHHHHHHh
Q 046257 600 GQQYFDIMVNEHHIYPT-MEHYSCMVDL--YSRAGMLEKAMDIIN 641 (838)
Q Consensus 600 a~~~~~~m~~~~~~~p~-~~~y~~lv~~--l~r~G~~~~A~~~~~ 641 (838)
|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998854 343 4556666655 888999999999998
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.04 E-value=0.0013 Score=72.75 Aligned_cols=335 Identities=10% Similarity=-0.021 Sum_probs=187.1
Q ss_pred hhhHHhhccCC--CCCcccHHHHHHHHHccCC-hHHHHHHHHHHHHc-CC-CCCcccHHHHHHHhcc----CCChhhHHH
Q 046257 29 KKDQSLFDRSP--QRNFVEYNRLLFEYCRDSL-HQEALNLFLGIRRL-GL-PLFGSTLSSVLKTCGC----LFDHVFGRQ 99 (838)
Q Consensus 29 ~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~-~~~~~~~~~ll~~~~~----~~~~~~a~~ 99 (838)
+.++.+|.+.- .|++-.|..-+.-..+.+. .+....+|+..... |. +.+...|...+..+.. .++.+.++.
T Consensus 31 e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~ 110 (493)
T 2uy1_A 31 RSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRN 110 (493)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 45556666532 2555566665554444442 23445566655543 32 2233445555554432 234556666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHh-------------CCChHHHHHHHccCCC----CCcchHHHHHHHHHhCCC---
Q 046257 100 VHCECVKSGFARDVNVSTSLVDLYMR-------------TNNVEDGRRVFDDMNE----SNVVSWTSLLSGYARNKM--- 159 (838)
Q Consensus 100 ~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~--- 159 (838)
+++.++......-...|......-.. .+.+..|+.+++.+.. .+...|...+.--..++.
T Consensus 111 iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~ 190 (493)
T 2uy1_A 111 GYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG 190 (493)
T ss_dssp HHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCC
T ss_pred HHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCc
Confidence 66666653211111222222111100 0112222333222111 122345554444322211
Q ss_pred ----chHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHH-H
Q 046257 160 ----NDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDA-R 234 (838)
Q Consensus 160 ----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~ 234 (838)
.+.+..+|+++.... +.+...|...+..+...|+.+.|+.+++.+++. +.+...+.. |+...+.++. .
T Consensus 191 ~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~ 263 (493)
T 2uy1_A 191 GRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYG 263 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHH
T ss_pred chhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHH
Confidence 234567888877643 334666777777778889999999999999988 444444332 2222122221 1
Q ss_pred HHHhcCC------------CCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhc-cCcHHHHHH
Q 046257 235 AVFDGME------------DRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCAT-TKELRLARQ 301 (838)
Q Consensus 235 ~~f~~m~------------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~ 301 (838)
.+.+... ......|-..+....+.+..+.|..+|.+. ... ..+...|......-.. .++.+.|+.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ 341 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYN 341 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHH
Confidence 1222110 001245777777777788899999999988 321 1233334321111111 236999999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhh
Q 046257 302 LHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTR 375 (838)
Q Consensus 302 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 375 (838)
+|+..++.. +.+...+...++...+.|+.+.|+.+|+.+. .....|...+..=...|+.+.+..+++++..
T Consensus 342 ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 342 IFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998874 3345566778888889999999999999985 3566788888877888999999998888875
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=2.9e-05 Score=70.09 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCM 623 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 623 (838)
...+..+...+.+.|++++|+..|++... ..|+ ...+..+..++...|++++|...|+..... .| ++..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---DINEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CCCCcHHHHHH
Confidence 34566677778888888888888888887 4554 456777777788888888888888887743 34 44567777
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
..+|...|++++|.+.+++. ++++|+++.......
T Consensus 93 g~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSA------------------RALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------HHHHHTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH------------------HHhCCCCcchHHHHH
Confidence 88888888888888888876 566676666554443
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.04 E-value=3.1e-05 Score=71.86 Aligned_cols=109 Identities=9% Similarity=0.015 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
+...|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|++++|...|+..++. .|+ ...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 456788888899999999999999999988 4564 567888888899999999999999988743 354 567888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLS 676 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~ 676 (838)
+..+|.+.|++++|.+.+++. ++++|+++..+...+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKG------------------IEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------HHHHSSSCCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHH------------------HHhCCCchHHHHHHH
Confidence 899999999999999999987 788898888665544
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.9e-05 Score=68.25 Aligned_cols=93 Identities=10% Similarity=0.034 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHH
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCM 623 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 623 (838)
...|..+...+.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|...|+...+. .|+ ...|..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 78 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHH
Confidence 34577777888888888888888888888 4454 567778888888888888888888888743 343 4567778
Q ss_pred HHHHHhcCCHHHHHHHHhhC
Q 046257 624 VDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m 643 (838)
..+|...|++++|.+.+++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHH
Confidence 88888899999999888876
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.02 E-value=2.9e-05 Score=68.47 Aligned_cols=92 Identities=11% Similarity=0.027 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC--------
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-------- 617 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------- 617 (838)
..|..+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|++++|.+.|+..++. .|+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHH
Confidence 4577788889999999999999999988 5676 466788888899999999999999887732 2321
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..|..+...+...|++++|++.+++.
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24666788889999999999999876
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.01 E-value=0.00018 Score=74.01 Aligned_cols=167 Identities=12% Similarity=0.016 Sum_probs=117.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMY 525 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y 525 (838)
.+...+..+...|++++|++.+.+..+.... +.... ..+ ..+..+...|
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~-~~~-----------------------------~~~~~~~~~~ 125 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQ-QFL-----------------------------QWQYYVAAYV 125 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHH-HHH-----------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHH-HHH-----------------------------HHHHHHHHHH
Confidence 3455677788899999999999887664211 11110 000 0112244567
Q ss_pred HhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-----hhHHHHHHHH
Q 046257 526 SKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ-DLEFD-----GITFIGVITA 590 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd-----~~t~~~ll~a 590 (838)
...|++++|...|++... .+ ..+|+.+...|...|++++|++.|++..+. ...|+ ..++..+..+
T Consensus 126 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 126 LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 888999999999876531 12 358999999999999999999999998731 01233 1578888999
Q ss_pred HhccCCHHHHHHHHHHHHhcC---CccCC-CchHHHHHHHHHhcCCHHHH-HHHHhhC
Q 046257 591 CTHAGLVDEGQQYFDIMVNEH---HIYPT-MEHYSCMVDLYSRAGMLEKA-MDIINRM 643 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~lv~~l~r~G~~~~A-~~~~~~m 643 (838)
|...|++++|..+++...+.. +.... ...|..+...|.+.|++++| ...+++.
T Consensus 206 y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 206 LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999999999999876331 11111 34678889999999999999 7777765
No 149
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.00 E-value=0.00016 Score=70.37 Aligned_cols=172 Identities=14% Similarity=0.037 Sum_probs=133.4
Q ss_pred hhHHhhccC-CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC----ChhhHHHHHHHH
Q 046257 30 KDQSLFDRS-PQRNFVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF----DHVFGRQVHCEC 104 (838)
Q Consensus 30 ~a~~~f~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~~~ 104 (838)
+|.+.|.+. ...+...+..|-..|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+...
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 455556554 23577788888888989999999999999998876 45666667777766 6 899999999988
Q ss_pred HHhCCCCChhHHHHHHHHHHh----CCChHHHHHHHccCCCCC-----cchHHHHHHHHHh----CCCchHHHHHHHHHH
Q 046257 105 VKSGFARDVNVSTSLVDLYMR----TNNVEDGRRVFDDMNESN-----VVSWTSLLSGYAR----NKMNDRVLELFHRMQ 171 (838)
Q Consensus 105 ~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 171 (838)
.+.| ++..+..|-.+|.. .+++++|...|+...+.+ +.++..|-..|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7765 56777788888877 789999999999877643 5788888888888 788999999999987
Q ss_pred HCCCCCChhhHHHHHHHHhc------CCChHHHHHHHHHHHHhCC
Q 046257 172 VEGIKPNSFTFSTVLGVLAD------EGIVATAVQVHTMVIKNGG 210 (838)
Q Consensus 172 ~~g~~p~~~t~~~ll~~~~~------~g~~~~a~~l~~~~~~~g~ 210 (838)
+. ..+...+..|-..+.. ..+.++|...+....+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 76 2344566666666643 2388999999999988873
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.99 E-value=9.8e-05 Score=64.04 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITAC 591 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 591 (838)
...+..+...|.+.|++++|.+.|+++. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4566778888999999999999998875 4567889999999999999999999999999853 23466788889999
Q ss_pred hccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhc
Q 046257 592 THAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRA 630 (838)
Q Consensus 592 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~ 630 (838)
...|++++|..+|+.+.+. .|+ ...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL---DPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhc
Confidence 9999999999999998743 343 34455555555443
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.99 E-value=2.7e-05 Score=85.81 Aligned_cols=129 Identities=11% Similarity=0.039 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG----------------ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
....|..+...|.+.|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|...++..+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345788888899999999999999999988 45553 678888899999999999999999988
Q ss_pred hcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchH
Q 046257 609 NEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 609 ~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~ 687 (838)
+. .| +...|..+..+|.+.|++++|++.|+++ ++++|++..++..++.++...|++++
T Consensus 345 ~~---~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a------------------l~l~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 345 GL---DSANEKGLYRRGEAQLLMNEFESAKGDFEKV------------------LEVNPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HTTC----CHHHHHHHHHHHHHHHHH
T ss_pred hc---CCccHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 43 34 4567888899999999999999999987 89999999999999999999999998
Q ss_pred HHH-HHHHHh
Q 046257 688 RAR-VRKLMN 696 (838)
Q Consensus 688 a~~-~~~~m~ 696 (838)
+.+ .++.|-
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 874 445553
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.96 E-value=4.1e-05 Score=65.11 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=69.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
..+..+...+...|++++|..+|+...+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------ 66 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYV------------------ 66 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHH------------------
Confidence 345556666667777777777777666332 123445667777788888888888888776
Q ss_pred hccCCC--CchhHHHHHHHHHhc-CCchHHHHHHHHHhhC
Q 046257 662 ISLQPH--DSAIYVLLSNMYAAT-GHWQERARVRKLMNDR 698 (838)
Q Consensus 662 ~~l~P~--~~~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~ 698 (838)
++++|+ ++..+..++.+|... |++++|.+.++...+.
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 677777 788888888888888 8888888888877654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.93 E-value=9.6e-05 Score=63.37 Aligned_cols=97 Identities=15% Similarity=0.127 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 581 GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 581 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
...+..+...+...|++++|..+|+..... .| +...+..+...+.+.|++++|.+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------- 64 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT---------------- 64 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHH----------------
Confidence 345677788889999999999999998854 34 5567888899999999999999999987
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 660 RLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++++|+++..+..++.+|...|++++|.+.++...+.
T Consensus 65 --~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 65 --VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 7789999999999999999999999999999988753
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=2.7e-05 Score=68.02 Aligned_cols=93 Identities=12% Similarity=0.001 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLI 662 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~ 662 (838)
+..+...+...|++++|...|+..++. .| +...|..+..++.+.|++++|++.+++. +
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------------------l 78 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHA------------------R 78 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------H
Confidence 444555666777777777777777633 34 3456666777778888888888888776 6
Q ss_pred ccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 663 SLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 663 ~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++|+++.++..|+.+|...|++++|...+++..+
T Consensus 79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888888888888888888888888888777654
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.91 E-value=5.9e-05 Score=67.17 Aligned_cols=96 Identities=10% Similarity=0.039 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 581 GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 581 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
...+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------- 69 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRA---------------- 69 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH----------------
Confidence 445555666666666666666666665532 23 2445666777777788888888777766
Q ss_pred HHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 660 RLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..+..++.+|...|++++|...+++..+
T Consensus 70 --l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 70 --LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp --HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 667777788888888888888888888887777654
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=0.00012 Score=66.08 Aligned_cols=97 Identities=8% Similarity=-0.094 Sum_probs=85.7
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHH
Q 046257 580 DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTV 655 (838)
Q Consensus 580 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~l 655 (838)
+...+..+...+...|++++|.++|+...+ ..|+ ...+..+...|.+.|++++|.+.+++.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------------ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------------ 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH------------
Confidence 345677888899999999999999999873 3566 567888899999999999999999987
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 656 LAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 656 l~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++..+..++.+|...|++++|...+++..+
T Consensus 92 ------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 92 ------IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp ------HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678999999999999999999999999999998865
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.88 E-value=4.9e-05 Score=69.57 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----C
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FDG----ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----M 617 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 617 (838)
.+|..+...|...|++++|++.|++..+..-. ++. .++..+...+...|++++|..+++.......-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34666666777777777777777776653111 111 35666667777778888888877776532111111 3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 618 EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 618 ~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
..+..+...+...|++++|.+.+++.- ..+.-....|.....+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL------------AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 356677788888999999988887651 00000011122345678899999999999999998887653
No 158
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.88 E-value=0.00051 Score=70.51 Aligned_cols=156 Identities=10% Similarity=-0.047 Sum_probs=110.4
Q ss_pred HHHHhHcCCChhHHHHHHhcCCCCC---c-----c-hHHHHHHHHHhCCChHHHHHHHHHhhhCCCC-CCh----hhHHH
Q 046257 220 LISMYLKSKMVRDARAVFDGMEDRD---S-----I-TWNSMVAGYVTNELHMEAFETFNNMGLAGAE-LTR----STFVS 285 (838)
Q Consensus 220 li~~y~~~g~~~~A~~~f~~m~~~~---~-----~-~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ 285 (838)
.+..+...|++++|..++++..+.. . . .+..+...+...|++++|++.|++....... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4666778888888888887754321 1 1 2234556666777889999999888764322 222 25777
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHh-----CCCC-ChhHHHHHHHHHHcCCChHHHHHHHHhccc----CCC----eeehH
Q 046257 286 VIKLCATTKELRLARQLHSQVLKN-----GIDF-DHNIRTGLMVAYSKCGKMEDASKIFSMMRE----MKD----VVSWT 351 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~-----g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~ 351 (838)
+...+...|+++.|...+..+++. +..+ ...++..+...|.+.|++++|...+++..+ ..+ ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888889999999988888742 1111 234777888899999999999998887653 111 34678
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHhhh
Q 046257 352 AMISGHLQNGA-IDLAVNFFCQMTR 375 (838)
Q Consensus 352 ~li~~~~~~g~-~~~A~~l~~~m~~ 375 (838)
.+...|.+.|+ +++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888999995 6999999888765
No 159
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.87 E-value=7.3e-05 Score=71.75 Aligned_cols=130 Identities=16% Similarity=0.053 Sum_probs=95.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCC-C--
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQRK---------RDLVSWNSMICGYAQHGHTKKALEVFKEMRRQD-LEF-D-- 580 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-d-- 580 (838)
...++..+...|...|++++|...|++... ....+|+.+...|...|++++|++.|++..+.- -.+ +
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 344556677778889999999888876542 134578888899999999999999999877630 022 2
Q ss_pred --hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 581 --GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 581 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
...+..+...+...|++++|..+++.......-.++ ...+..+..++.+.|++++|.+.+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 245777788888999999999999887632111112 223577889999999999999998875
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.87 E-value=2e-05 Score=75.79 Aligned_cols=126 Identities=7% Similarity=0.026 Sum_probs=91.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC--------------
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-------------- 616 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------------- 616 (838)
.+.+....|++++|.+.|+.-.+. .+ ....+..+...+...|++++|..+|+...+...-.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp ------------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 344555567777777776543321 22 2345777788889999999999999998854322221
Q ss_pred CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 617 MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 617 ~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
...|..+..+|.+.|++++|.+.+++. ++++|+++.++..++.+|...|++++|.+.+++..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKV------------------LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH------------------HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 157788889999999999999999987 78899999999999999999999999999999886
Q ss_pred h
Q 046257 697 D 697 (838)
Q Consensus 697 ~ 697 (838)
+
T Consensus 150 ~ 150 (198)
T 2fbn_A 150 S 150 (198)
T ss_dssp H
T ss_pred H
Confidence 5
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=2.5e-05 Score=82.31 Aligned_cols=128 Identities=13% Similarity=0.075 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh------------------HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGI------------------TFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------------------t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
.|..+...|.+.|++++|+..|++.++ +.|+.. .|..+..++.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666677777777777777666 345543 677788888899999999999988874
Q ss_pred cCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHH-HHhcCCchH
Q 046257 610 EHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNM-YAATGHWQE 687 (838)
Q Consensus 610 ~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~-y~~~g~~~~ 687 (838)
. .| +...|..+..+|...|++++|++.+++. ++++|+++.++..|..+ ....+..++
T Consensus 259 ~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a------------------l~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 259 E---EEKNPKALFRRGKAKAELGQMDSARDDFRKA------------------QKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp H---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT------------------TC-------------------------
T ss_pred h---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 35 4567888889999999999999999988 78888888888888888 445566777
Q ss_pred HHHHHHHHhhC
Q 046257 688 RARVRKLMNDR 698 (838)
Q Consensus 688 a~~~~~~m~~~ 698 (838)
+.++++.|-..
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=6.2e-05 Score=66.36 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--------hHHH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--------ITFI 585 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--------~t~~ 585 (838)
.+.-|...|.+.|++++|.+.|++.. +.+...|+.+..+|...|++++|++.|++.++ +.|+. .+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHH
Confidence 34457778999999999999999765 55788999999999999999999999999987 33432 3677
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS 621 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 621 (838)
.+..++...|++++|.+.|+..... .|+++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~ 120 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVK 120 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHH
Confidence 7788889999999999999988743 46665543
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.86 E-value=0.00018 Score=62.85 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITA 590 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 590 (838)
...+..+...|...|++++|...|++.. +.+...|..+...|...|++++|++.+++..+. .|+ ...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 4455667778899999999999998765 457888999999999999999999999999984 555 5678888889
Q ss_pred HhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCH
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGML 633 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~ 633 (838)
+...|++++|..+|+...+. .| +...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhcC
Confidence 99999999999999998744 34 445667777788777764
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=7.1e-05 Score=69.14 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCc
Q 046257 546 LVSWNSMICGYAQHGHTKKALEVFKEMRRQD------LEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TME 618 (838)
Q Consensus 546 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 618 (838)
...|......+.+.|++++|++.|++.++.- -.|+...+ ..+ .| +..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~------~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL------DRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH------HHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH------HHHHHH
Confidence 3467777777888888888888887776620 01111100 000 12 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 619 HYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 619 ~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.|..+..+|.+.|++++|...+++. ++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEV------------------LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHH------------------HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6788889999999999999999987 7899999999999999999999999999999988652
Q ss_pred CCccCCceeEEEECCEEEEEeeCCCCCCChH-HHHHHHHHHHHHHHHc
Q 046257 699 KVKKEAGYSWIEVKNKTYSFLAGDISHPQSN-QIYSKLEELSTRLKDA 745 (838)
Q Consensus 699 g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~-~i~~~l~~l~~~~~~~ 745 (838)
.|... .+...+..+...+++.
T Consensus 127 --------------------------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 --------------------------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp --------------------------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 35555 6777777777766543
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.86 E-value=0.00036 Score=71.18 Aligned_cols=146 Identities=4% Similarity=-0.061 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSC 622 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 622 (838)
+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+ +.|+ ...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788899999999999999999999999 4664 66788888899999999999999999873 4454 567888
Q ss_pred HHHHHHhcCCHHHHHHHHhhC----C---CCCCHHHHHHHHHHHH------HhccCCCCchhHHHHHHHHHhcCCchHHH
Q 046257 623 MVDLYSRAGMLEKAMDIINRM----P---FAASATVWRTVLAACR------LISLQPHDSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m----~---~~~~~~~w~~ll~~c~------~~~l~P~~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
+..+|.+.|++++|.+.+++. | ..-+..+|..+..+-. .....|.++.....+..++ .|++++|.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999999875 2 1112345555533311 3345677888877777665 68888888
Q ss_pred HHHHHHhh
Q 046257 690 RVRKLMND 697 (838)
Q Consensus 690 ~~~~~m~~ 697 (838)
+.++...+
T Consensus 156 ~~~~~al~ 163 (281)
T 2c2l_A 156 EECQRNHE 163 (281)
T ss_dssp TTTSGGGT
T ss_pred HHHHhhhc
Confidence 77665543
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.85 E-value=7.6e-05 Score=66.46 Aligned_cols=96 Identities=3% Similarity=-0.098 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchH
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHY 620 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y 620 (838)
..+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .| +...+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~ 80 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL---DGQSVKAH 80 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CchhHHHH
Confidence 345666777777777777777777777777773 444 456666777777777777777777777643 23 34566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
..+..+|...|++++|.+.+++.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 67777777788888887777765
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=8.3e-05 Score=65.22 Aligned_cols=114 Identities=6% Similarity=0.051 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcc-CC----CchH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIY-PT----MEHY 620 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~----~~~y 620 (838)
..|..+...|...|++++|+..|++..+. .| +...+..+...+...|++++|..+++.......-. ++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777888888889999999999888884 34 45667777888888899999999888877432111 11 4567
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh
Q 046257 621 SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA 681 (838)
Q Consensus 621 ~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~ 681 (838)
..+..+|.+.|++++|.+.++++ +++.| ++.....+..++..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~------------------~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKS------------------LAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------HHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH------------------HHhCC-CHHHHHHHHHHHHH
Confidence 78889999999999999999876 55566 55555555554443
No 168
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.84 E-value=0.00017 Score=63.48 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=93.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHH
Q 046257 513 NALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVI 588 (838)
Q Consensus 513 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll 588 (838)
.+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+. .|+ ...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345666777888999999999999999865 447788999999999999999999999999984 454 56788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCC
Q 046257 589 TACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGM 632 (838)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~ 632 (838)
.++...|++++|.++|+...+. .| +...+..+..++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL---DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhcC
Confidence 8999999999999999998743 34 34556666777766553
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.00016 Score=63.41 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHH
Q 046257 551 SMICGYAQHGHTKKALEVFKEMRRQDLEFDGI----TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSC 622 (838)
Q Consensus 551 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 622 (838)
.+...+...|++++|++.|++..+. .|+.. .+..+..++...|++++|...|+...+.. |+ ...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHHHH
Confidence 4455666777777777777777773 34432 56666667777788888888777776432 33 334566
Q ss_pred HHHHHHhcCCHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m 643 (838)
+..+|.+.|++++|.+.++++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677777888888888887766
No 170
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.81 E-value=0.0033 Score=65.07 Aligned_cols=223 Identities=12% Similarity=0.006 Sum_probs=151.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCC-ChhhHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 046257 46 YNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLF-DHVFGRQVHCECVKSGFARDVNVSTSLVDLYM 124 (838)
Q Consensus 46 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 124 (838)
|+.+-......+..++|+.++++++... +-+..+|+.--......+ .++++....+.++... +.+..+|+.---.+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444444556666788999999999864 333444555555555566 5999999999988765 456778887777776
Q ss_pred hC-C-ChHHHHHHHccCCC---CCcchHHHHHHHHHhCCCch--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 046257 125 RT-N-NVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKMND--------RVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 125 ~~-g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
+. + +++++...++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 66 6 88999999998876 45567777665555555566 899999999887643 77788888877777
Q ss_pred CCC-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCCh--------------------hHHHHHHhcCCC--
Q 046257 192 EGI-------VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMV--------------------RDARAVFDGMED-- 242 (838)
Q Consensus 192 ~g~-------~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~--------------------~~A~~~f~~m~~-- 242 (838)
.+. ++++.+....+++.. +.|...|+-+-..+.+.|+. ........++..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 775 678888888888876 66788888877777776654 223333333322
Q ss_pred -------CCcchHHHHHHHHHhCCChHHHHHHHHHhh
Q 046257 243 -------RDSITWNSMVAGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 243 -------~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 272 (838)
++...+..+...|...|+.++|.++++.+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233345556666666666666666666654
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=0.00018 Score=60.89 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---hhHHHHHH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD---GITFIGVI 588 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll 588 (838)
...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHHH
Confidence 3444556666777777777777776654 34566677777777777777777777777776 3444 45566666
Q ss_pred HHHhcc-CCHHHHHHHHHHHHh
Q 046257 589 TACTHA-GLVDEGQQYFDIMVN 609 (838)
Q Consensus 589 ~a~~~~-g~~~~a~~~~~~m~~ 609 (838)
.++... |++++|.++++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 677777 777777777777663
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.78 E-value=7.6e-05 Score=79.51 Aligned_cols=123 Identities=9% Similarity=0.052 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------CCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQ--------------DLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
..|..+...|.+.|++++|++.|++.++. ...|+ ..+|..+..++.+.|++++|.++++...+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 34667777888888888888888877751 12333 45788888899999999999999999883
Q ss_pred CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHH
Q 046257 612 HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 612 ~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
+.| +...|..+..+|.+.|++++|.+.+++. ++++|++..++..++.++...|+.+++.+
T Consensus 302 -~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A------------------l~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 -IDPSNTKALYRRAQGWQGLKEYDQALADLKKA------------------QEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCchhHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 4567888899999999999999999987 78899999999999999999988888765
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.77 E-value=0.00014 Score=76.47 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC-C---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQR--KR-D---------------LVSWNSMICGYAQHGHTKKALEVFKEMRRQD 576 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 576 (838)
...+..+...|.+.|++++|...|++.. .| + ...|..+..+|.+.|++++|++.|++.++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-- 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 3455667778899999999999998765 33 3 58899999999999999999999999999
Q ss_pred CCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHH-HHHhhC
Q 046257 577 LEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAM-DIINRM 643 (838)
Q Consensus 577 ~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~-~~~~~m 643 (838)
+.|+ ...+..+..++...|++++|...|+...+. .| +...+..+..++.+.|+.++|. +.+++|
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 567888999999999999999999998843 45 4567888899999999999994 456655
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.77 E-value=0.00018 Score=66.58 Aligned_cols=95 Identities=7% Similarity=0.022 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Q 046257 514 ALCVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVIT 589 (838)
Q Consensus 514 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 589 (838)
+...+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++.++ +.|+ ...+..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556667788999999999999999875 45788999999999999999999999999999 5666 567888999
Q ss_pred HHhccCCHHHHHHHHHHHHhc
Q 046257 590 ACTHAGLVDEGQQYFDIMVNE 610 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~ 610 (838)
++...|++++|...|+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998844
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.76 E-value=6.7e-05 Score=65.45 Aligned_cols=90 Identities=6% Similarity=-0.090 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHH
Q 046257 549 WNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDL 626 (838)
Q Consensus 549 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 626 (838)
|..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|++..+ +.| +...+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 33444455555666666666665555 3443 33444555555555666666666655542 223 23345555555
Q ss_pred HHhcCCHHHHHHHHhhC
Q 046257 627 YSRAGMLEKAMDIINRM 643 (838)
Q Consensus 627 l~r~G~~~~A~~~~~~m 643 (838)
|.+.|++++|.+.+++.
T Consensus 95 ~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 95 HTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 66666666666666554
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.75 E-value=0.00021 Score=62.72 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=79.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC----chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 584 FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM----EHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
+..+...+...|++++|...|+...+.. |+. ..+..+...+.+.|++++|.+.+++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~---------------- 65 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDL---------------- 65 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH----------------
Confidence 3345667788999999999999988543 443 36777889999999999999999987
Q ss_pred HHhccCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 660 RLISLQPHD---SAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 660 ~~~~l~P~~---~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++..|++ +.++..++.+|...|++++|...++...+
T Consensus 66 --~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 66 --VSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788988 77899999999999999999999998875
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.75 E-value=4.2e-05 Score=69.17 Aligned_cols=108 Identities=10% Similarity=-0.022 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------h-----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD--------G-----ITFIGVITACTHAGLVDEGQQYFDIMVNE---- 610 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---- 610 (838)
.|......+.+.|++++|++.|++.++ +.|+ . ..|..+..++...|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456667778888899999999988888 5565 1 27888888888999999999998888742
Q ss_pred CCccCCC-chH----HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH
Q 046257 611 HHIYPTM-EHY----SCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL 675 (838)
Q Consensus 611 ~~~~p~~-~~y----~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l 675 (838)
..+.|+- ..| .....+|...|++++|++.|++. ++++|+|.+++--+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA------------------lel~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV------------------VEMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH------------------HhcCCCcHHHHHHH
Confidence 1125653 456 77889999999999999999987 88999888765433
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.75 E-value=8.1e-05 Score=68.77 Aligned_cols=111 Identities=8% Similarity=0.012 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhc
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTH 593 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~ 593 (838)
...+......|.+.|++++|...|.+.... +.......+..... +.+ ..|. ...|..+..++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--------~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~nla~~~~~ 75 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--------LDTLILREKPGEPE--WVE-----LDRKNIPLYANMSQCYLN 75 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHHTSCTTSHH--HHH-----HHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHhcccCCCCHHH--HHH-----HHHHHHHHHHHHHHHHHh
Confidence 445667788899999999999998764311 00000000000000 000 1122 2345555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.|++++|...++..++. .| +...|..+..+|...|++++|.+.+++.
T Consensus 76 ~~~~~~A~~~~~~al~~---~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKR---EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 66666666666555522 23 2344555666666666666666666655
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.70 E-value=0.0001 Score=64.65 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----hhHHHH
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDL--EFD----GITFIG 586 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~t~~~ 586 (838)
..+..+...|...|++++|...|++.. +.+...|..+...|...|++++|+..|++..+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345667778899999999999998765 45778899999999999999999999999988421 122 567888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHH
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDL 626 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 626 (838)
+..++...|++++|.+.|+...+. .|+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 888999999999999999998843 4555555444433
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.68 E-value=0.0045 Score=64.12 Aligned_cols=184 Identities=10% Similarity=0.055 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc-C-CHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChH-------
Q 046257 496 VEQGKQFHACSIKAKLNNALCVSSALVTMYSKK-G-NIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTK------- 563 (838)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~-g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~------- 563 (838)
++.+..+...+++.. +.+..+|+--...+.+. + ++++++++++++. .+|...|+--.-.+.+.|..+
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence 445555555444433 22334444444444444 5 7788999998887 457788887766666666666
Q ss_pred -HHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC-------HHHHHHHHHHHHhcCCccCC-CchHHHHHHHHHhcCCH
Q 046257 564 -KALEVFKEMRRQDLEF-DGITFIGVITACTHAGL-------VDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLYSRAGML 633 (838)
Q Consensus 564 -~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~G~~ 633 (838)
++++.++++.+. .| |...|+.......+.+. +++++++++.++.. .|+ ...|.-+-.++.+.|+-
T Consensus 184 ~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 184 GSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCC
Confidence 899999999995 44 45677777777777775 78999999888743 454 34555556666666653
Q ss_pred --------------------HHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 046257 634 --------------------EKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRK 693 (838)
Q Consensus 634 --------------------~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~ 693 (838)
.+..++..++.-..+. .+.++.++-+...|+.+|...|+.++|.++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP------------EDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCC------------SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccc------------cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3334444443211000 12235678888899999999999999999999
Q ss_pred HHhh
Q 046257 694 LMND 697 (838)
Q Consensus 694 ~m~~ 697 (838)
.+.+
T Consensus 327 ~l~~ 330 (349)
T 3q7a_A 327 KLSS 330 (349)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 181
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.65 E-value=0.00015 Score=72.64 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=87.6
Q ss_pred hCCChHHHHHHHccCCC--C-CcchHHHH-------HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 046257 125 RTNNVEDGRRVFDDMNE--S-NVVSWTSL-------LSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGI 194 (838)
Q Consensus 125 ~~g~~~~A~~~f~~m~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 194 (838)
..++.+.|++.|.+..+ | ....|+.+ ...+.+.++..+++..+.+-. ++.|+......-| .|-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~-----~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAI-----GGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEEC-----CTT
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhcc-----CCc
Confidence 46888888888887764 3 34567766 345555555555555444433 2333321110000 000
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHhh
Q 046257 195 VATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED--RDSITWNSMVAGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 195 ~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~n~li~~~~~~g~~~~A~~l~~~m~ 272 (838)
+.. +..-+..-..+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...
T Consensus 91 y~~--------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~ 162 (282)
T 4f3v_A 91 YGD--------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAG 162 (282)
T ss_dssp TCC--------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred ccc--------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 000 0000000011222333444445555555555555443 211133333334555555555555554332
Q ss_pred hCCCCCC--hhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHcCCChHHHHHHHHhcc
Q 046257 273 LAGAELT--RSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFD--HNIRTGLMVAYSKCGKMEDASKIFSMMR 342 (838)
Q Consensus 273 ~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 342 (838)
... .|. ...+..+-.++...|++++|...+++.......|. ......+..++.+.|+.++|..+|+++.
T Consensus 163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 211 010 11344444455555555555555555543221122 2233444445555555555555555554
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.62 E-value=3.9e-05 Score=66.44 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 595 GLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 595 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
|++++|...|+...+...-.| +...+..+..+|.+.|++++|.+.+++. ++++|+++..+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~ 65 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------------------VKQFPNHQALRV 65 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCchHHHH
Confidence 444555555555442100012 2234455555556666666666666554 455566666666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHh
Q 046257 674 LLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 674 ~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.++.+|...|++++|...+++..
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666666555554
No 183
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.61 E-value=0.00013 Score=65.95 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-------------chHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-------------EHYSCMVDLYSRAGMLEKAMDIINRMPFAASA 649 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------------~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~ 649 (838)
.+......+...|++++|...|+..++ +.|+. ..|..+..++.+.|++++|+..+++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA------ 83 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA------ 83 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH------
Confidence 455667778899999999999999883 34551 17888899999999999999999986
Q ss_pred HHHHHHHHHHHHhcc-------CCCCchhH----HHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 650 TVWRTVLAACRLISL-------QPHDSAIY----VLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 650 ~~w~~ll~~c~~~~l-------~P~~~~~y----~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
+++ +|+++..| ..++.+|...|++++|...+++..+
T Consensus 84 ------------L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 ------------LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ------------HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555 99999999 9999999999999999999998864
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.59 E-value=0.00019 Score=65.47 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----h
Q 046257 516 CVSSALVTMYSKKGNIESASEVFKRQRK-----RD----LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE-FD----G 581 (838)
Q Consensus 516 ~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~ 581 (838)
.++..+...|...|++++|.+.|++... .+ ..++..+...|...|++++|++.|++..+..-. ++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3556677788899999999999987651 22 147888999999999999999999998763111 12 3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 582 ITFIGVITACTHAGLVDEGQQYFDIMVNEH---HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 582 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
.++..+...+...|++++|.++++...+.. +..+ ....+..+...+...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 457777888899999999999998876331 1111 1345777889999999999999999865
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00041 Score=75.72 Aligned_cols=192 Identities=9% Similarity=-0.038 Sum_probs=119.3
Q ss_pred HHHHHHcCCHHHHHHHHHhcCCC-----Cc---------------chHHHHHHHHHhcCCchHHHHHHHHhhcCC-CCCC
Q 046257 420 LNAYVKKGILDEAAKVFELIDEK-----DI---------------VAWSAMLAGYAQIGDTEGAVKIYRQLTSEG-VKPN 478 (838)
Q Consensus 420 i~~y~~~g~~~~A~~~f~~~~~~-----~~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 478 (838)
...+.+.|++++|.+.|..+.+. +. .++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567899999999999877531 11 136788999999999999999998876421 1111
Q ss_pred HhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CC-CHHHH
Q 046257 479 EFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR--------KR-DLVSW 549 (838)
Q Consensus 479 ~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~-~~~~~ 549 (838)
..+... +.+.+-..+...|+.+.|.++++... .+ -..++
T Consensus 91 ~~~~~~--------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 91 SKTVKV--------------------------------LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHH--------------------------------HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred hHHHHH--------------------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 111100 11112222334455566555554332 11 13466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC----CC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-----ch
Q 046257 550 NSMICGYAQHGHTKKALEVFKEMRRQDLE----FD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-----EH 619 (838)
Q Consensus 550 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~----pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~ 619 (838)
..+...|...|++++|+.++++....-.. |. ..++..+...|...|++++|..+++.......-.+++ ..
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 77788888888888888888877653111 22 2357777778888888888888887765322111221 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+.++...+...|++++|...+.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677777888888887776544
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.55 E-value=5.4e-05 Score=65.53 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHHHHHcCC-CCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHH
Q 046257 559 HGHTKKALEVFKEMRRQDL-EFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~-~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~ 635 (838)
.|++++|+..|++.++.+. .|+ ...+..+..++...|++++|..+|+...+. .| +...+..+..+|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHcCCHHH
Confidence 4566666666666666321 133 244555666666666666666666666533 23 23455556666666677777
Q ss_pred HHHHHhhC
Q 046257 636 AMDIINRM 643 (838)
Q Consensus 636 A~~~~~~m 643 (838)
|.+.+++.
T Consensus 80 A~~~~~~a 87 (117)
T 3k9i_A 80 GVELLLKI 87 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.53 E-value=0.011 Score=60.84 Aligned_cols=216 Identities=12% Similarity=0.110 Sum_probs=131.1
Q ss_pred hcCCch-HHHHHHHHhhcCCCCCCHhhH-H---HHHHHhcCC------hhhHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 046257 456 QIGDTE-GAVKIYRQLTSEGVKPNEFTF-S---SVINACTAP------SAAVEQGKQFHACSIKAKLNNALCVSSALVTM 524 (838)
Q Consensus 456 ~~g~~~-~A~~l~~~m~~~g~~p~~~t~-~---~ll~a~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 524 (838)
+.|.+. +|++++..+.. +.|+..|. + .+|...... ...++....+...++... +-+..+|+--.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 67777777775 45655443 1 112111100 011455556666666544 3355666665556
Q ss_pred HHhcC--CHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc---
Q 046257 525 YSKKG--NIESASEVFKRQR---KRDLVSWNSMICGYAQHGH-TKKALEVFKEMRRQDLEFD-GITFIGVITACTHA--- 594 (838)
Q Consensus 525 y~k~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~--- 594 (838)
+.+.| .++++..+++++. ++|...|+--.-.+...|. .+++++.+.++.+. .|+ ...|+.......+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 66667 4888888888776 6678888888888888887 58899999999884 454 45565554444433
Q ss_pred -----------CCHHHHHHHHHHHHhcCCccCCC-chHHHHHHHHHhc-----------CCHHHHHHHHhhCCCCCCHHH
Q 046257 595 -----------GLVDEGQQYFDIMVNEHHIYPTM-EHYSCMVDLYSRA-----------GMLEKAMDIINRMPFAASATV 651 (838)
Q Consensus 595 -----------g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~-----------G~~~~A~~~~~~m~~~~~~~~ 651 (838)
+.++++++++...+.. .|+- ..|+-+-.++.+. +.++++++.++++
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el-------- 264 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL-------- 264 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH--------
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH--------
Confidence 4578888888887743 4543 3444344445444 3456666666665
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHH---HhcCCchHHHHHHHHHhh
Q 046257 652 WRTVLAACRLISLQPHDSAIYVLLSNMY---AATGHWQERARVRKLMND 697 (838)
Q Consensus 652 w~~ll~~c~~~~l~P~~~~~y~~l~~~y---~~~g~~~~a~~~~~~m~~ 697 (838)
++++|++.-.+..++-+. ...|..+++...+.++.+
T Consensus 265 ----------le~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 265 ----------QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp ----------HHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ----------HhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 778887754443333222 235677778878877765
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.0018 Score=72.95 Aligned_cols=134 Identities=8% Similarity=0.100 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccC-CHHHHHHH
Q 046257 531 IESASEVFKRQR---KRDLVSWNSMICGYAQHG--HTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAG-LVDEGQQY 603 (838)
Q Consensus 531 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g-~~~~a~~~ 603 (838)
++++.+.++.+. +++..+|+.-...+.+.| +++++++.++++.+. .| |...|+.-..+..+.| .++++.++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHH
Confidence 778888888775 668889999888888999 669999999999994 45 4567777777778888 89999999
Q ss_pred HHHHHhcCCccC-CCchHHHHHHHHHhc--------------CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 604 FDIMVNEHHIYP-TMEHYSCMVDLYSRA--------------GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 604 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------------G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
++.+++. .| +...|.-...++.+. +.+++|.++++++ ++++|+|
T Consensus 167 ~~~~I~~---~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a------------------i~~~P~~ 225 (567)
T 1dce_A 167 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA------------------FFTDPND 225 (567)
T ss_dssp HHTTTTT---TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH------------------HHHCSSC
T ss_pred HHHHHHH---CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH------------------HhhCCCC
Confidence 9988733 34 344555555555542 5578888888876 8899999
Q ss_pred chhHHHHHHHHHhcCCchH
Q 046257 669 SAIYVLLSNMYAATGHWQE 687 (838)
Q Consensus 669 ~~~y~~l~~~y~~~g~~~~ 687 (838)
..+|.-+..++...|+.++
T Consensus 226 ~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 226 QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHhcCCCccc
Confidence 9999999999999998665
No 189
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.43 E-value=0.0011 Score=72.99 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRD---------------LVSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 578 (838)
.+..+...|.+.|++++|...|++.. +.+ ...|+.+..+|.+.|++++|+..|++.++ +.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--LD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cC
Confidence 44556677889999999999998765 233 58899999999999999999999999999 55
Q ss_pred CC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHH-HHhhC
Q 046257 579 FD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMD-IINRM 643 (838)
Q Consensus 579 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~-~~~~m 643 (838)
|+ ...+..+..++...|++++|...|+...+ +.| +...+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 56788899999999999999999999873 455 45788889999999999998874 45666
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.42 E-value=0.00019 Score=78.90 Aligned_cols=134 Identities=10% Similarity=0.043 Sum_probs=86.8
Q ss_pred HHHcCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCc-cCC-CchHHH
Q 046257 556 YAQHGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNE----HHI-YPT-MEHYSC 622 (838)
Q Consensus 556 ~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~y~~ 622 (838)
+...|++++|+.++++.++. -+-|++ .+++.|..+|...|++++|..++++...- +|- -|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556667776666665542 122332 35667777777777777777777665422 221 122 235788
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDS---AIYVLLSNMYAATGHWQERARVRKLMNDRK 699 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~---~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g 699 (838)
|..+|...|++++|+.++++.- .++. ..+.|++| ..+..|...+...|++++|..++..++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al-----~i~~--------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY-----AILL--------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-----HHHH--------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-----HHHH--------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999988761 0111 12344443 445678888999999999999999998765
Q ss_pred Ccc
Q 046257 700 VKK 702 (838)
Q Consensus 700 ~~~ 702 (838)
.+.
T Consensus 466 ~~~ 468 (490)
T 3n71_A 466 LNN 468 (490)
T ss_dssp HTC
T ss_pred hcC
Confidence 443
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.36 E-value=0.00077 Score=71.69 Aligned_cols=97 Identities=5% Similarity=0.034 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcC-------------CccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCC
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEH-------------HIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAAS 648 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~ 648 (838)
.+..+...+...|++++|.+.|+...+.. ...| +...|..+..+|.+.|++++|++.+++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a----- 299 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA----- 299 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH-----
Confidence 35667778889999999999999887410 0223 3467888999999999999999999987
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 649 ATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 649 ~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 300 -------------l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 300 -------------LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -------------HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 889999999999999999999999999999998875
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.35 E-value=0.00034 Score=73.51 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--CCCH------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR--KRDL------------------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLE 578 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~--~~~~------------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 578 (838)
..+...|.+.|++++|...|++.. .|+. ..|+.+..+|.+.|++++|+..|++.++ +.
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~ 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT--EE 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 344556667777888877777654 3322 2788999999999999999999999998 56
Q ss_pred CC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC-CchHHHHHHHH-HhcCCHHHHHHHHhhC
Q 046257 579 FD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT-MEHYSCMVDLY-SRAGMLEKAMDIINRM 643 (838)
Q Consensus 579 pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l-~r~G~~~~A~~~~~~m 643 (838)
|+ ...+..+..++...|++++|...|+... .+.|+ ...+..+..+. ...+..+++.+.+.+|
T Consensus 261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~ 325 (338)
T 2if4_A 261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGI 325 (338)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C---------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 5678889999999999999999999886 34554 44555555553 3456778888888887
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00045 Score=58.52 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.+..+...+...|++++|.+.|+...+. .| +...+..+..+|.+.|++++|.+.+++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------ 64 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG------------------ 64 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------
Confidence 3444445555555555555555555422 22 2344555666666667777776666665
Q ss_pred hccCCCC------chhHHHHHHHHHhcCCchHHHH
Q 046257 662 ISLQPHD------SAIYVLLSNMYAATGHWQERAR 690 (838)
Q Consensus 662 ~~l~P~~------~~~y~~l~~~y~~~g~~~~a~~ 690 (838)
++++|++ ...+..++.++...|++++|..
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSS
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHh
Confidence 5566665 5566666666666666665544
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0024 Score=69.54 Aligned_cols=210 Identities=8% Similarity=-0.010 Sum_probs=138.4
Q ss_pred HHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH
Q 046257 452 AGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNI 531 (838)
Q Consensus 452 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 531 (838)
..+.+.|++++|++.|.++.+.......... .. +......... ......|...|.+.|++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~--------~~-~~~~~~~~~~-----------~~al~~l~~~y~~~~~~ 71 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAA--------GA-SVDDKRRNEQ-----------ETSILELGQLYVTMGAK 71 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSS--------SS-SBCSHHHHHH-----------HHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHH--------HH-HHHHHHhhhH-----------HHHHHHHHHHHHHCCCH
Confidence 4567889999999999998874322211100 00 0000000000 01235578889999999
Q ss_pred HHHHHHHHhcCC-----CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-hhHHHHHHHHHhccCCH
Q 046257 532 ESASEVFKRQRK-----RDL----VSWNSMICGYAQHGHTKKALEVFKEMRR----QDLEFD-GITFIGVITACTHAGLV 597 (838)
Q Consensus 532 ~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~ll~a~~~~g~~ 597 (838)
++|.+.+....+ ++. ...+.+...+...|+.++|++++++... .+..+. ..++..+...+...|++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 72 DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 999999987651 111 2344444555667899999999998765 233333 34677888899999999
Q ss_pred HHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC----c
Q 046257 598 DEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD----S 669 (838)
Q Consensus 598 ~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~----~ 669 (838)
++|..+++.......-..+ .+.|..++.+|...|++++|..++++.- .+ ..-.|.. .
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-----~~----------~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR-----TA----------ANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HH----------HHHSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-----HH----------hhcCCCchHHHH
Confidence 9999999887644222122 3468888999999999999999998751 00 0001111 3
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 670 AIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 670 ~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
..+..++.+|...|+|++|.+.+...-
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778889999999999988776664
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00023 Score=60.41 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC------
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM------ 617 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------ 617 (838)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.++...+ +.|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 345677788888888889999999888888 4554 56677788888888999999998888873 34553
Q ss_pred -chHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 618 -EHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 618 -~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
..+..+..++...|+.++|.+.++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 344555666666777777766666653
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.16 E-value=0.0012 Score=53.39 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 046257 583 TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRL 661 (838)
Q Consensus 583 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~ 661 (838)
.+..+...+...|++++|..+|+...+. .| +...+..+..+|.+.|++++|.+.+++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------ 69 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA------------------ 69 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH------------------
Confidence 4445555555666666666666655532 22 3345566677777777777777777765
Q ss_pred hccCCCCchhHHHHHHHHHhcC
Q 046257 662 ISLQPHDSAIYVLLSNMYAATG 683 (838)
Q Consensus 662 ~~l~P~~~~~y~~l~~~y~~~g 683 (838)
++++|+++..+..++.+|...|
T Consensus 70 ~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 70 LELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCCHHHHHHHHHHHHhcC
Confidence 5667777777777777776544
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.12 E-value=0.00079 Score=56.13 Aligned_cols=64 Identities=8% Similarity=0.099 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 616 TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 616 ~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+...+..+...|.+.|++++|++.+++. ++++|+++.+|..++.+|...|++++|.+.+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEEL------------------VETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788899999999999999999987 7899999999999999999999999999999987
Q ss_pred hh
Q 046257 696 ND 697 (838)
Q Consensus 696 ~~ 697 (838)
.+
T Consensus 68 l~ 69 (100)
T 3ma5_A 68 IE 69 (100)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 198
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.06 E-value=0.0002 Score=75.03 Aligned_cols=433 Identities=10% Similarity=0.088 Sum_probs=245.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 046257 112 DVNVSTSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 112 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
.+.+|..|..++.+.+.+.+|++.|-+. .|+..|..+|....+.|.+++-+..+...++..-.| ..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4456677777777777776666655333 455556677777777777777776665554442222 333456667777
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCC------------------------CCcch
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMED------------------------RDSIT 247 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~ 247 (838)
.+++.+.+++.. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 666554443332 34444445555556666666666666665542 36788
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHH
Q 046257 248 WNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGI-DFDHNIRTGLMVAYS 326 (838)
Q Consensus 248 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~ 326 (838)
|-.+-.+|+..+.+.-|.-.--.+.- .| ..+..++..|-..|-+++-..+++.-+ |. .....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999988766544333331 11 223345566777888887777777655 32 346778899998998
Q ss_pred cCCChHHHHHHHHhccc---CC-------CeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCC
Q 046257 327 KCGKMEDASKIFSMMRE---MK-------DVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVS 396 (838)
Q Consensus 327 ~~g~~~~A~~~f~~~~~---~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 396 (838)
|-. .++-.+-++..-. .| ....|.-++-.|.+..+++.|... |.+. .|+...-..+.....+..
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCS
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcc
Confidence 874 3333333322221 22 344588888888888888876543 2221 112222222233334444
Q ss_pred hhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHH-------------hcCCCCcchH-HHHHHHHHhcCCchH
Q 046257 397 PFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFE-------------LIDEKDIVAW-SAMLAGYAQIGDTEG 462 (838)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~-------------~~~~~~~~~~-~~li~~~~~~g~~~~ 462 (838)
+.++.-..+..-++-.+...+-|+..+...=+...+.++|. .+...|...- .++-..|....+++.
T Consensus 349 N~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp CSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 44555555555555555555555555444444444444444 3334444333 344555666666543
Q ss_pred HHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 046257 463 AVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR 542 (838)
Q Consensus 463 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 542 (838)
-.. -.+.--.-|......-|.- ..+-.-++ .-...|.|.++++++..+.++=.
T Consensus 429 LR~----SId~ydNFD~i~LA~rLEk-----HeL~eFRr------------------IAA~LYkkn~rw~qsi~l~KkDk 481 (624)
T 3lvg_A 429 LRT----SIDAYDNFDNISLAQRLEK-----HELIEFRR------------------IAAYLFKGNNRWKQSVELCKKDS 481 (624)
T ss_dssp HHH----TTSSCCCSCTTHHHHHHHT-----CSSHHHHH------------------HHHHHHHTTCHHHHHSSCSSTTC
T ss_pred HHH----HHHHhccccHHHHHHHHhh-----CchHHHHH------------------HHHHHHHhcccHHHHHHHHHhcc
Confidence 221 1221112232222222211 11111111 12335788899988887654322
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
.|---|..-+..|+.+-|.++++-..+.| +...|.+.|..|-..=+.|-++++
T Consensus 482 -----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 -----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp -----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred -----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 12223455567889999999999998876 567899999999888777777665
No 199
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.04 E-value=0.018 Score=59.20 Aligned_cols=144 Identities=10% Similarity=0.121 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCC-HHHHHHH
Q 046257 531 IESASEVFKRQR---KRDLVSWNSMICGYAQHGH--TKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGL-VDEGQQY 603 (838)
Q Consensus 531 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~-~~~a~~~ 603 (838)
++++...++.+. +++..+|+.-...+...|+ +++++++++++.+. .| |...|+.-.....+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 677888887765 6688999998888888884 89999999999994 45 45667766667777787 6999999
Q ss_pred HHHHHhcCCccC-CCchHHHHHHHHHhc--------------CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 604 FDIMVNEHHIYP-TMEHYSCMVDLYSRA--------------GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 604 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------------G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
++.+++.. | |...|+-...++.+. +.++++++++++. +.++|+|
T Consensus 168 ~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~a------------------i~~~P~d 226 (331)
T 3dss_A 168 TDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA------------------FFTDPND 226 (331)
T ss_dssp HHHHHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHH------------------HHHSTTC
T ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHH------------------HHhCCCC
Confidence 99998543 4 334455555555544 4577888888776 7889999
Q ss_pred chhHHHHHHHHHhc-----------CCchHHHHHHHHHhh
Q 046257 669 SAIYVLLSNMYAAT-----------GHWQERARVRKLMND 697 (838)
Q Consensus 669 ~~~y~~l~~~y~~~-----------g~~~~a~~~~~~m~~ 697 (838)
..++.-+-.++... +..+++.+.++++.+
T Consensus 227 ~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 227 QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 99988776676666 457788888888865
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.03 E-value=0.0014 Score=56.17 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 046257 599 EGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSN 677 (838)
Q Consensus 599 ~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~ 677 (838)
++...|+...+ ..| +...+..+...|.+.|++++|.+.+++. ++++|+++..|..++.
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~~p~~~~~~~~la~ 61 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAA------------------LDFDPTYSVAWKWLGK 61 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH------------------HHHCCCcHHHHHHHHH
Confidence 45566666652 234 3456777888888888888888888876 6778888888888999
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 046257 678 MYAATGHWQERARVRKLMND 697 (838)
Q Consensus 678 ~y~~~g~~~~a~~~~~~m~~ 697 (838)
+|...|++++|...+++..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999888887754
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.0014 Score=53.68 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=59.6
Q ss_pred CCCchHHHHHHHHHhcCC---HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHH
Q 046257 615 PTMEHYSCMVDLYSRAGM---LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARV 691 (838)
Q Consensus 615 p~~~~y~~lv~~l~r~G~---~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~ 691 (838)
++++.+..+..++...++ .++|..++++. ++++|+++.+...+++.+...|++++|...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A------------------L~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~ 65 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQA------------------LQLEPYNEAALSLIANDHFISFRFQEAIDT 65 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------HHHCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 466778888888865555 79999999987 899999999999999999999999999999
Q ss_pred HHHHhhCCC
Q 046257 692 RKLMNDRKV 700 (838)
Q Consensus 692 ~~~m~~~g~ 700 (838)
|+++.+...
T Consensus 66 w~~~l~~~p 74 (93)
T 3bee_A 66 WVLLLDSND 74 (93)
T ss_dssp HHHHHTCCC
T ss_pred HHHHHhhCC
Confidence 999987543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.91 E-value=0.0029 Score=56.39 Aligned_cols=113 Identities=13% Similarity=0.062 Sum_probs=91.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHh----cCCHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSR----AGMLE 634 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~G~~~ 634 (838)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 456889999999999987 44433 666777778899999999988743 355667778888888 88999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHhhCCC
Q 046257 635 KAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAA----TGHWQERARVRKLMNDRKV 700 (838)
Q Consensus 635 ~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 700 (838)
+|.+++++.- + -.++.++..|+.+|.. .++.++|.+++++..+.|.
T Consensus 79 ~A~~~~~~Aa------------------~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKAC------------------G--LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHH------------------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH------------------c--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999761 2 2478889999999999 8999999999999887764
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.89 E-value=0.0025 Score=69.99 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=88.7
Q ss_pred HHhccCCHHHHHHHHHHHHhcCC--ccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhc
Q 046257 590 ACTHAGLVDEGQQYFDIMVNEHH--IYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLIS 663 (838)
Q Consensus 590 a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~ 663 (838)
.+...|++++|..++++...... +-|+ ..+++.|..+|...|++++|+.++++.- .++...+ -.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-----~i~~~~l-----G~ 387 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-----DGYMKLY-----HH 387 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHS-----CT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHHHc-----CC
Confidence 34578999999999887664322 2222 2458889999999999999999998761 1111111 11
Q ss_pred cCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046257 664 LQPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 664 l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 743 (838)
-.|+-...|..|+.+|...|++++|..++++..+--.+ .- ...||.+.++...|.+...+++
T Consensus 388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV-TH-----------------GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-Hh-----------------CCCChHHHHHHHHHHHHHHHHH
Confidence 24445667889999999999999999999887542111 01 1469999999888887776655
Q ss_pred H
Q 046257 744 D 744 (838)
Q Consensus 744 ~ 744 (838)
.
T Consensus 450 ~ 450 (490)
T 3n71_A 450 M 450 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.0028 Score=68.48 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=82.0
Q ss_pred HhccCCHHHHHHHHHHHHhcCC--ccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhcc
Q 046257 591 CTHAGLVDEGQQYFDIMVNEHH--IYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISL 664 (838)
Q Consensus 591 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l 664 (838)
+...|++++|..++++...... +.|+ ..+++.+..+|...|++++|+.+++++- .++...+ -.-
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L-----~i~~~~l-----g~~ 366 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM-----EPYRIFF-----PGS 366 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHHS-----CSS
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----HhHHHHc-----CCC
Confidence 3345566666666665543221 1121 2346777888888899999988888751 1111111 122
Q ss_pred CCCCchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 046257 665 QPHDSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLK 743 (838)
Q Consensus 665 ~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 743 (838)
.|+-...|..|+.+|...|++++|..++++..+--.+ .- ...||.+.+++..|.+...+|+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-~l-----------------G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-TH-----------------GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HT-----------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hc-----------------CCCChHHHHHHHHHHHHHHHHh
Confidence 4545567889999999999999999999887642110 00 1469999999999999888876
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.77 E-value=0.0035 Score=52.04 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 545 DLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 545 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
+...|..+...|...|++++|++.|++..+ ..|+ ...|..+..++...|++++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566677777777777788888888877777 4454 4566677777777777777777777665
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.77 E-value=0.0018 Score=55.34 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 609 (838)
+.+...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|+...+
T Consensus 16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777888888888888887777 3454 45666777777777888888887777663
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.73 E-value=0.051 Score=64.37 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=70.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHH
Q 046257 524 MYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQY 603 (838)
Q Consensus 524 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 603 (838)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3567899999999987763 567899999999999999999999998754 34455555556766665555
Q ss_pred HHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 604 FDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 604 ~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-+.... .| .++.-..+|.+.|++++|.+++.++
T Consensus 730 ~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444332 11 2344455666677777777765544
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.73 E-value=0.00079 Score=60.65 Aligned_cols=48 Identities=10% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcC-----------CchHHHHHHHHHhhC
Q 046257 633 LEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATG-----------HWQERARVRKLMNDR 698 (838)
Q Consensus 633 ~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g-----------~~~~a~~~~~~m~~~ 698 (838)
+++|+..+++. ++++|+++.+|..++++|...| ++++|.+.+++..+.
T Consensus 62 ~~eAi~~le~A------------------L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEA------------------LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHH------------------HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 67899999887 8999999999999999999875 899999999998763
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.71 E-value=0.025 Score=63.60 Aligned_cols=146 Identities=8% Similarity=-0.052 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhcc
Q 046257 529 GNIESASEVFKRQR---KRDLVSWNSMICGYAQHGH----------TKKALEVFKEMRRQDLEFD-GITFIGVITACTHA 594 (838)
Q Consensus 529 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~ 594 (838)
..-++|.+.++.+. +.+...|+.--..+...|+ ++++++.++++.+ ..|. ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888776 4567889988888877777 8999999999999 4565 56788777888888
Q ss_pred C--CHHHHHHHHHHHHhcCCccC-CCchHHHHHHHHHhcC-CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch
Q 046257 595 G--LVDEGQQYFDIMVNEHHIYP-TMEHYSCMVDLYSRAG-MLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA 670 (838)
Q Consensus 595 g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~G-~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~ 670 (838)
| +++++.++++.+.+. .| +...|+--..++.+.| ..++|.++++++ ++.+|.|..
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~------------------I~~~p~n~s 179 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL------------------ITRNFSNYS 179 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT------------------TTTTCCCHH
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHH------------------HHHCCCCcc
Confidence 9 789999999999854 34 3445666677888889 899999999998 788999999
Q ss_pred hHHHHHHHHHhc--------------CCchHHHHHHHHHhh
Q 046257 671 IYVLLSNMYAAT--------------GHWQERARVRKLMND 697 (838)
Q Consensus 671 ~y~~l~~~y~~~--------------g~~~~a~~~~~~m~~ 697 (838)
+|...+.++... ++++++.+.++....
T Consensus 180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 999988888874 556777777766553
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.66 E-value=0.027 Score=58.19 Aligned_cols=135 Identities=16% Similarity=0.034 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHH--HcCC---hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhc---cC-----CHHHHHHHHHHH
Q 046257 542 RKRDLVSWNSMICGYA--QHGH---TKKALEVFKEMRRQDLEFDG-ITFIGVITACTH---AG-----LVDEGQQYFDIM 607 (838)
Q Consensus 542 ~~~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~---~g-----~~~~a~~~~~~m 607 (838)
.+.+...|...+.|.. ..++ ..+|+.+|++.++ ..|+. ..+..+..++.. .+ ......+.+...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 3457777777776543 3333 4789999999999 68874 344444433321 11 111111122221
Q ss_pred HhcCCc-cCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCch
Q 046257 608 VNEHHI-YPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQ 686 (838)
Q Consensus 608 ~~~~~~-~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~ 686 (838)
. .... ..+...|..+.-.+...|++++|...++++ ++++| +...|+.++.++.-.|+++
T Consensus 268 ~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rA------------------l~Ln~-s~~a~~llG~~~~~~G~~~ 327 (372)
T 3ly7_A 268 V-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG------------------IDLEM-SWLNYVLLGKVYEMKGMNR 327 (372)
T ss_dssp H-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHHCC-CHHHHHHHHHHHHHTTCHH
T ss_pred H-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHH------------------HhcCC-CHHHHHHHHHHHHHCCCHH
Confidence 1 1122 334567777766677779999999999988 67887 5778899999999999999
Q ss_pred HHHHHHHHHhhC
Q 046257 687 ERARVRKLMNDR 698 (838)
Q Consensus 687 ~a~~~~~~m~~~ 698 (838)
+|.+.+++....
T Consensus 328 eA~e~~~~AlrL 339 (372)
T 3ly7_A 328 EAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999877653
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.57 E-value=0.0024 Score=57.52 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=61.7
Q ss_pred HhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 046257 526 SKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHT----------KKALEVFKEMRRQDLEFD-GITFIGVITAC 591 (838)
Q Consensus 526 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~ 591 (838)
.+.+.+++|.+.++... +.+...|+.+..++...|++ ++|+..|++.++ +.|+ ..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 34556777777776654 45677777777777776654 588888888888 6676 35677777777
Q ss_pred hccC-----------CHHHHHHHHHHHHhcCCccCCCchH
Q 046257 592 THAG-----------LVDEGQQYFDIMVNEHHIYPTMEHY 620 (838)
Q Consensus 592 ~~~g-----------~~~~a~~~~~~m~~~~~~~p~~~~y 620 (838)
...| ++++|.++|++.+ .+.|+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl---~l~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAV---DEQPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH---HHCTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHH---HhCCCCHHH
Confidence 7654 6777777777776 345665444
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.56 E-value=0.0017 Score=70.02 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHhcC--CccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC
Q 046257 594 AGLVDEGQQYFDIMVNEH--HIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPH 667 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~--~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~ 667 (838)
.|++++|..++++..... -+-|+ ..+++.|..+|...|++++|+.+++++- .++...+ -.-.|+
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-----~i~~~~l-----G~~Hp~ 380 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-----KPYSKHY-----PVYSLN 380 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHS-----CSSCHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-----HHHHHHc-----CCCChH
Confidence 355666666655543221 11222 2457778888888999999999888761 1111111 112454
Q ss_pred CchhHHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHH
Q 046257 668 DSAIYVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLE 736 (838)
Q Consensus 668 ~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~ 736 (838)
-...|..|+.+|...|++++|..++++..+--.+ . -...||.+.+++..|+
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV-A-----------------HGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-H-----------------cCCCChHHHHHHHHHh
Confidence 5567889999999999999999999887642111 0 0146998888777665
No 213
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.30 E-value=0.02 Score=45.89 Aligned_cols=60 Identities=17% Similarity=0.336 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 547 VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFD-GITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 547 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
..|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|++++|..+|+...
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555555555555552 232 3344555555555555666655555554
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.25 E-value=0.0085 Score=49.28 Aligned_cols=58 Identities=19% Similarity=0.386 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCch-hHHHHHHHHHhcCCchHHHHHHHHHhhC
Q 046257 623 MVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSA-IYVLLSNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 623 lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~-~y~~l~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
.+..+.+.|++++|.+.+++. ++++|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~a------------------l~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEF------------------LQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH------------------HHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH------------------HHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567788999999999999987 788999999 9999999999999999999999998753
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.25 E-value=0.072 Score=47.08 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHH----cCChHHHHHH
Q 046257 494 AAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKKGNIESASEVFKRQR-KRDLVSWNSMICGYAQ----HGHTKKALEV 568 (838)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l 568 (838)
.+.+.+...+....+.|... .. |..+|...+.+++|.+.|++.. ..+...++.|...|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF---GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 34444555555554444111 11 4555666666666777776654 4466677777777776 6777778888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 046257 569 FKEMRRQDLEFDGITFIGVITACTH----AGLVDEGQQYFDIMV 608 (838)
Q Consensus 569 ~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 608 (838)
|++..+.| +......|...+.. .++.++|.++|+...
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 77777754 44555566666666 677777777777765
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.82 E-value=0.013 Score=61.82 Aligned_cols=395 Identities=12% Similarity=0.106 Sum_probs=198.1
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCcccHHHHHHHhccCCChhhHHHHHHHHHHhCCCCChhHHHHHHHH
Q 046257 43 FVEYNRLLFEYCRDSLHQEALNLFLGIRRLGLPLFGSTLSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVNVSTSLVDL 122 (838)
Q Consensus 43 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 122 (838)
...|..|..+....+...+|++.|=+ .-|+..|..++.++.+.|..+.-...+....+. ..++.+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 34577777777777777777765522 235666777788877777777776666554443 3445556677777
Q ss_pred HHhCCChHH----------------------------HHHHHccCCC------------------------CCcchHHHH
Q 046257 123 YMRTNNVED----------------------------GRRVFDDMNE------------------------SNVVSWTSL 150 (838)
Q Consensus 123 y~~~g~~~~----------------------------A~~~f~~m~~------------------------~~~~~~~~l 150 (838)
|++.+++.+ |.-+|..++. .++.||-.+
T Consensus 126 yAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 126 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp HHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred HHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 777766543 2222222221 244455555
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCCh
Q 046257 151 LSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMV 230 (838)
Q Consensus 151 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 230 (838)
-.+|...+.++-|.-.--.+. ..+.-...++.-|-..|.+++...+++..+... .....+++-|.-.|+|- +.
T Consensus 206 ~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CH
Confidence 555555555544433222221 111112233444555566666555555544211 34567788888888875 44
Q ss_pred hHHHHHHhcCCC----C-------CcchHHHHHHHHHhCCChHHHHHHHHHhhhC-CCCCChhhHHHHHHHHhccCcHHH
Q 046257 231 RDARAVFDGMED----R-------DSITWNSMVAGYVTNELHMEAFETFNNMGLA-GAELTRSTFVSVIKLCATTKELRL 298 (838)
Q Consensus 231 ~~A~~~f~~m~~----~-------~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~ 298 (838)
++..+-++..-. | ....|.-++-.|.+-..++.|... |.+. ....+...| -....+..+.+.
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~F---kdii~KVaN~Ei 352 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQF---KDIITKVANVEL 352 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGG---TTTGGGCSCSHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHH---HHHHHHcchHHH
Confidence 444444433221 2 445688888888888888766543 2211 001111111 111222333332
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhccc------------CCCeeehH-HHHHHHHHcCChHH
Q 046257 299 ARQLHSQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMRE------------MKDVVSWT-AMISGHLQNGAIDL 365 (838)
Q Consensus 299 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------~~~~~~~~-~li~~~~~~g~~~~ 365 (838)
--+..... +.-.+...+-|+..+...=+...+.++|++... ..|...-| ++-..|....+++.
T Consensus 353 yYKAi~FY----L~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 353 YYRAIQFY----LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHHHHH----TTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHH----HHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 22222222 122333344444444444444444444444321 23333333 34445555555442
Q ss_pred HHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcc
Q 046257 366 AVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIV 445 (838)
Q Consensus 366 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 445 (838)
...-+.++.+...+.+...+.++.+ ......-...|.+.++++++..+..+= .
T Consensus 429 -------------------LR~SId~ydNFD~i~LA~rLEkHeL---~eFRrIAA~LYkkn~rw~qsi~l~KkD-----k 481 (624)
T 3lvg_A 429 -------------------LRTSIDAYDNFDNISLAQRLEKHEL---IEFRRIAAYLFKGNNRWKQSVELCKKD-----S 481 (624)
T ss_dssp -------------------HHHTTSSCCCSCTTHHHHHHHTCSS---HHHHHHHHHHHHTTCHHHHHSSCSSTT-----C
T ss_pred -------------------HHHHHHHhccccHHHHHHHHhhCch---HHHHHHHHHHHHhcccHHHHHHHHHhc-----c
Confidence 1222222333333333333333211 112223344577788888777654321 2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC
Q 046257 446 AWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP 492 (838)
Q Consensus 446 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 492 (838)
.|.-.|..-+..|+.+-|.++++-..+.| +...|...|-.|..+
T Consensus 482 lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdL 525 (624)
T 3lvg_A 482 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDL 525 (624)
T ss_dssp CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSS
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhc
Confidence 23333444556777777887777777644 445677777788776
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.67 E-value=0.037 Score=59.69 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=59.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCc-cCC-Cch
Q 046257 553 ICGYAQHGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNE----HHI-YPT-MEH 619 (838)
Q Consensus 553 i~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~ 619 (838)
+..+.+.|++++|++++++.++. -+.|++ .+++.+..+|...|++++|..++++...- +|- -|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455667777777777777652 123443 35677777777777777777777765422 221 122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
|+.|..+|...|++++|+.+++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777888888888888888888875
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.56 E-value=0.028 Score=60.52 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCh----hHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCc-cCCC-chHHHHHH
Q 046257 559 HGHTKKALEVFKEMRRQ---DLEFDG----ITFIGVITACTHAGLVDEGQQYFDIMVNE----HHI-YPTM-EHYSCMVD 625 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~~-~~y~~lv~ 625 (838)
.|++++|+.++++.++. -+.|++ .+++.|..+|...|++++|..++++...- +|- -|+. ..|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766542 233442 46777777777788888887777765522 221 1322 35888999
Q ss_pred HHHhcCCHHHHHHHHhhC
Q 046257 626 LYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 626 ~l~r~G~~~~A~~~~~~m 643 (838)
+|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 999999999999999876
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.54 E-value=0.047 Score=48.50 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhcCCHHHH
Q 046257 562 TKKALEVFKEMRRQDLEFDGITFIGVITACTHAG---LVDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAGMLEKA 636 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G~~~~A 636 (838)
...+.+-|.+..+.|. ++..+-..+..++.+++ ++++|..+++...+.. .| +.+.+-.+.-++.|.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 4556677777777664 67777777888888888 6779999999888542 24 244445567788999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHH
Q 046257 637 MDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVL 674 (838)
Q Consensus 637 ~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~ 674 (838)
.+.++.. ++++|+|..+..+
T Consensus 91 ~~y~~~l------------------L~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGL------------------LQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHH------------------HHHCTTCHHHHHH
T ss_pred HHHHHHH------------------HhcCCCCHHHHHH
Confidence 9999987 8999977655443
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.37 E-value=0.37 Score=49.75 Aligned_cols=74 Identities=9% Similarity=0.111 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH
Q 046257 543 KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS 621 (838)
Q Consensus 543 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 621 (838)
+.+...|.++...+...|++++|+..++++... .|+...|..+...+...|+.++|.+.|+.... +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 446677777766666677888888888887774 36666666666667777888888877777663 355555543
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.29 E-value=0.064 Score=43.75 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCc-hHHHHHHHHH
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEFD-GI-TFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTME-HYSCMVDLYS 628 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~ 628 (838)
....+...|++++|++.|++..+ ..|+ .. .+..+..++...|++++|.+.|+...+. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~------ 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL---NPDSPALQAR------ 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTSTHHHHH------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHH------
Confidence 34556677777777777777777 3454 34 5666666777777777777777776632 34332 1110
Q ss_pred hcCCHHHHHHHHhhC
Q 046257 629 RAGMLEKAMDIINRM 643 (838)
Q Consensus 629 r~G~~~~A~~~~~~m 643 (838)
+.+++|...+++.
T Consensus 75 --~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 75 --KMVMDILNFYNKD 87 (99)
T ss_dssp --HHHHHHHHHHCCT
T ss_pred --HHHHHHHHHHHHH
Confidence 4566666666655
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.24 E-value=0.41 Score=56.43 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=69.6
Q ss_pred HHcCCChHHHHH-HHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHH
Q 046257 325 YSKCGKMEDASK-IFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAH 403 (838)
Q Consensus 325 y~~~g~~~~A~~-~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~ 403 (838)
....+++++|.+ ++..++ +......++..+.+.|..++|+++.++-.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~---~~~~~~~~~~~l~~~~~~~~a~~~~~~~~----------------------------- 656 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE---GKDSLTKIARFLEGQEYYEEALNISPDQD----------------------------- 656 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC---CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-----------------------------
T ss_pred HHHhCCHHHHHHHHHhcCC---chHHHHHHHHHHHhCCChHHheecCCCcc-----------------------------
Confidence 345677777776 543322 11122666777777888888876653211
Q ss_pred HHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhc
Q 046257 404 IIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 404 ~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
.-......+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++..
T Consensus 657 --------------~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 657 --------------QKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp --------------HHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred --------------hheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 12334567899999999987764 457899999999999999999999998754
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.81 E-value=0.037 Score=54.75 Aligned_cols=112 Identities=12% Similarity=0.093 Sum_probs=81.0
Q ss_pred hcCCHHHHHHHHHhcCCCC--HHHHHHHHHH-HHHc--CC------hHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHh
Q 046257 527 KKGNIESASEVFKRQRKRD--LVSWNSMICG-YAQH--GH------TKKALEVFKEMRRQDLEFD---GITFIGVITACT 592 (838)
Q Consensus 527 k~g~~~~A~~~f~~~~~~~--~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~ 592 (838)
+.|+..+-.+.+.+..+.+ ...|..++.+ ++.. |. ..+|..++++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 3455555555566665444 3567776653 3432 33 4678888888888 7787 457777888888
Q ss_pred c-----cCCHHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhc-CCHHHHHHHHhhC
Q 046257 593 H-----AGLVDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRA-GMLEKAMDIINRM 643 (838)
Q Consensus 593 ~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~-G~~~~A~~~~~~m 643 (838)
. .|+.++|.++|++..+ +.| +..++..+.+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 4999999999999883 467 377888888999884 9999999999876
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.57 E-value=0.12 Score=45.86 Aligned_cols=106 Identities=9% Similarity=0.040 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccC-C-CCchh
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAG---MLEKAMDIINRMPFAASATVWRTVLAACRLISLQ-P-HDSAI 671 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G---~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~-P-~~~~~ 671 (838)
+..+.+.|...... +. ++.++.-.+..+|.+.. +++++..++++. ++.+ | ++...
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~l------------------l~~~~p~~~rd~ 73 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEEL------------------LPKGSKEEQRDY 73 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH------------------HHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------------HhcCCccchHHH
Confidence 45556666655432 33 67777777889999988 677999999876 5556 6 56788
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYK 748 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 748 (838)
++.|+-.|.+.|++++|.+.++...+. .|...+-....+.+.+.+++.|++
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 889999999999999999999998762 344445555555566777787765
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.12 E-value=0.14 Score=42.55 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=49.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCC-----ccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNEHH-----IYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAAC 659 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c 659 (838)
..+...+...|+++.|...|+...+... -.+....+..+...|.+.|++++|...++++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a---------------- 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL---------------- 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH----------------
Confidence 3455555566666666666655543221 1123456788889999999999999999987
Q ss_pred HHhccCCCCchhHHHH
Q 046257 660 RLISLQPHDSAIYVLL 675 (838)
Q Consensus 660 ~~~~l~P~~~~~y~~l 675 (838)
++++|+++.+...+
T Consensus 73 --l~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 73 --LELDPEHQRANGNL 86 (104)
T ss_dssp --HHHCTTCHHHHHHH
T ss_pred --HhcCCCCHHHHhhH
Confidence 78888887764444
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.06 E-value=0.24 Score=42.29 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHH---HHHHHHHHHhcCCccC--CCchHHHHHHHHHhcCCHHH
Q 046257 561 HTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDE---GQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAGMLEK 635 (838)
Q Consensus 561 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G~~~~ 635 (838)
....+.+-|.+....|. |+..|-..+..++.++....+ |..+++...+.. .| ..+..-.|.-++.|.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34556666666666554 676666678888888887655 999998887431 13 22333446678999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHH
Q 046257 636 AMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLL 675 (838)
Q Consensus 636 A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l 675 (838)
|.+.++.+ ++.+|+|..+..+.
T Consensus 93 A~~~~~~l------------------L~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGL------------------LQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHH------------------HHHCTTCHHHHHHH
T ss_pred HHHHHHHH------------------HHhCCCCHHHHHHH
Confidence 99999987 88899777655443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.98 E-value=2 Score=39.00 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQ 602 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 602 (838)
+....+|+++.|.++.+.+ .+...|..|......+|+.+-|.+.|++..+ |..+.-.|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456889999999998877 4678899999999999999999999988755 4455555666777766655
Q ss_pred HHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 046257 603 YFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMP 644 (838)
Q Consensus 603 ~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~ 644 (838)
+-+... ..| -++.-...+.-.|+++++.+++.+..
T Consensus 82 la~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544433 212 24555556667899999999888763
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.57 E-value=2.4 Score=36.22 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHH
Q 046257 594 AGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 594 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
.|++......+-.+- -+.++..--++.+..+|+.|.-.+++... +.-+|-++...+
T Consensus 74 C~NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~------------------l~n~~~~~~~l~ 129 (172)
T 1wy6_A 74 CQNLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREI------------------LKNNEVSASILV 129 (172)
T ss_dssp CSCTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHH------------------C--CCSCHHHHH
T ss_pred hhcHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHH------------------hccCCCChHHHH
Confidence 445555555444331 24556666678888888888888888773 122444889999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCCCcc
Q 046257 674 LLSNMYAATGHWQERARVRKLMNDRKVKK 702 (838)
Q Consensus 674 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~~ 702 (838)
-++++|.+.|...+|.+++++.-++|++.
T Consensus 130 kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 130 AIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999863
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.33 E-value=0.89 Score=36.61 Aligned_cols=63 Identities=6% Similarity=-0.054 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 544 RDLVSWNSMICGYAQHGH---TKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 544 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
.|...|..+..++...++ .++|..+|++.++ ..|+. .....+...+...|++++|..+|+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355556666666654444 5777777777777 56664 344555556677777777777777776
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.27 E-value=0.13 Score=50.92 Aligned_cols=87 Identities=9% Similarity=0.133 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCccCC---CchHHHHHHHHHhc-----CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCC
Q 046257 597 VDEGQQYFDIMVNEHHIYPT---MEHYSCMVDLYSRA-----GMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHD 668 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~-----G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~ 668 (838)
+.+|...+++.+ .+.|+ -..|..+..+|.+. |+.++|++.|++. ++++|+.
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA------------------L~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL------------------TRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH------------------HHHCCTT
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH------------------HHhCCCC
Confidence 456666666655 45676 34688899999995 9999999999988 8999974
Q ss_pred -chhHHHHHHHHHhc-CCchHHHHHHHHHhhCCCccCC
Q 046257 669 -SAIYVLLSNMYAAT-GHWQERARVRKLMNDRKVKKEA 704 (838)
Q Consensus 669 -~~~y~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~~~~ 704 (838)
..+++.++..|+.. |+.+++.+.+++...-..+..|
T Consensus 238 ~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 238 DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999995 9999999999999876655434
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.19 E-value=2.9 Score=37.99 Aligned_cols=128 Identities=15% Similarity=0.095 Sum_probs=82.8
Q ss_pred hHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHH
Q 046257 224 YLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLH 303 (838)
Q Consensus 224 y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 303 (838)
...+|+++.|.++.+.+ .+...|..+.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 44677888887777665 3566788888888888888888888887653 344444455566766666555
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHHcCChHHHHHHHHHhh
Q 046257 304 SQVLKNGIDFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQNGAIDLAVNFFCQMT 374 (838)
Q Consensus 304 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 374 (838)
+.....| -++.-...+.-.|+++++.++|.+.. . |.--+......|..+.|.++.+++-
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~-r-----~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG-S-----LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT-C-----HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC-C-----hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 5554444 23444555667788888888887765 1 2222222234677788888877763
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.47 E-value=21 Score=39.93 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=127.9
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhH
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAV 496 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 496 (838)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++-..|- ........++...... +.+
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~-g~l 152 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRAS-GKQ 152 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHT-TCS
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHC-CCC
Confidence 4455667778888888876665 333444444556667778887778777777766542 2223334444444321 111
Q ss_pred ---HHHHHHHHHHHHh-----------cCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHH---HHHHHHHHHH
Q 046257 497 ---EQGKQFHACSIKA-----------KLNNA-LCVSSALVTMYSKKGNIESASEVFKRQRKRDLVS---WNSMICGYAQ 558 (838)
Q Consensus 497 ---~~~~~~~~~~~~~-----------~~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~ 558 (838)
+.-..+ ..+... .+.++ .....+++..+.+-..+. ...... .++... +..-+.-+++
T Consensus 153 t~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~---~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 153 DPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp CHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHH---HHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 111111 111110 11111 122233333333322221 111111 112111 1111222333
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHH
Q 046257 559 HGHTKKALEVFKEMRRQDLEFDGIT----FIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLE 634 (838)
Q Consensus 559 ~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~ 634 (838)
.+.+.|..+|......+ ..+... ...+.......+...++...+...... .++.....-.+....+.|+++
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 37899999999887643 223322 222333334445355667777665422 123333334444556789999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 635 KAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 635 ~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.|.+.|+.|+-.+ +..+...+=++..+.+.|+-++|..+++..-+
T Consensus 303 ~a~~~~~~l~~~~------------------~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 303 GLNTWLARLPMEA------------------KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHSCTTG------------------GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccc------------------cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999996322 11344455667778888999999888877653
No 233
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.11 E-value=17 Score=36.54 Aligned_cols=131 Identities=10% Similarity=0.111 Sum_probs=77.9
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHH----HHHhhhCCCCCChhhHHHHHHHHhc
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFET----FNNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ .+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34555667788888888877642 23345667777666664 3444556788888777777776655
Q ss_pred cC-----cHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHcCCChHHHHHHHHhcccCCCeeehHHHHHHHHH
Q 046257 293 TK-----ELRLARQLHSQVLKNGI--DFDHNIRTGLMVAYSKCGKMEDASKIFSMMREMKDVVSWTAMISGHLQ 359 (838)
Q Consensus 293 ~~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~ 359 (838)
.. ...-..+....-.+.|- .-++.....+...|.+.|++.+|+.-|-.-. ..|...+-.|+.-+.+
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLC 177 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHH
Confidence 32 11222233333333332 2367788888889999999999888775222 1234444444444333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.04 E-value=2.3 Score=37.23 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCChh----HHHHHH--HH-HhccCCHHHHHHHHHHHH
Q 046257 542 RKRDLVSWNSMICGYAQHGHT------KKALEVFKEMRRQDLEFDGI----TFIGVI--TA-CTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 542 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----t~~~ll--~a-~~~~g~~~~a~~~~~~m~ 608 (838)
.+.|..+|-..+.-.-+.|++ ++.+++|++.... ++|+.. .|.-+. .| +...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366888999999998888999 8899999988875 677531 121111 11 123478999999999997
Q ss_pred hcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 609 NEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 609 ~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+. +-+- ...|-....--.|.|+++.|.+++.+.
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 54 2221 445555566677999999999999876
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.41 E-value=20 Score=36.32 Aligned_cols=167 Identities=10% Similarity=0.027 Sum_probs=99.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCChhhHHHHHHHHhc
Q 046257 116 STSLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELF----HRMQVEGIKPNSFTFSTVLGVLAD 191 (838)
Q Consensus 116 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 191 (838)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...|+..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566778899999999997643 133455667776665554 555677888999888888888876
Q ss_pred CCChH-----HHHHHHHHHHHhC--CCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHH
Q 046257 192 EGIVA-----TAVQVHTMVIKNG--GEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEA 264 (838)
Q Consensus 192 ~g~~~-----~a~~l~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A 264 (838)
...-+ ...+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|-.-..+++..+..|+..+.+.+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 65321 2223333334444 2346777888888999999999998888422222224554444333333322221
Q ss_pred HHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 046257 265 FETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLK 308 (838)
Q Consensus 265 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (838)
|.+.-..+|. |...+++..|..+++...+
T Consensus 187 --------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 2222223333 3345677777776665543
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.14 E-value=1.5 Score=36.11 Aligned_cols=62 Identities=13% Similarity=0.081 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 046257 518 SSALVTMYSKKGNIESASEVFKRQR----------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG 581 (838)
Q Consensus 518 ~~~li~~y~k~g~~~~A~~~f~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 581 (838)
+-.|...+.+.|+++.|...|+... ......+..+..+|.+.|+.++|+..+++..+ +.|+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3345555666666666666665432 01234566666666677777777777766666 55654
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.31 E-value=2.1 Score=38.21 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC-----CCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCChh-HHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQR-----KRDL-------VSWNSMICGYAQHGHTKKALEVFKEMRRQD-LEFDGI-TFIG 586 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~-t~~~ 586 (838)
-+..+...|.++.|+-+.+.+. ++++ .+...+..++...|++.+|...|++.++.. .-|... +..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3555666777877776665433 3332 234455667777788888888887765421 112111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 046257 587 VITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINRMPFA 646 (838)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~ 646 (838)
+.. ...... .....++.+.---+...|.+.|+.++|+.+++.+|.+
T Consensus 106 ~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 100 000000 0011223333334678889999999999999999743
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=85.96 E-value=15 Score=31.40 Aligned_cols=84 Identities=14% Similarity=-0.010 Sum_probs=55.5
Q ss_pred cCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHH
Q 046257 226 KSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQ 305 (838)
Q Consensus 226 ~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 305 (838)
.||.+.....-+-.+.. +..-.+.-+...+..|+-++-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 34444444444433332 333445567777888888888888777543 3567777777888888888888888888888
Q ss_pred HHHhCC
Q 046257 306 VLKNGI 311 (838)
Q Consensus 306 ~~~~g~ 311 (838)
.-+.|+
T Consensus 151 AC~kG~ 156 (172)
T 1wy6_A 151 ACKKGE 156 (172)
T ss_dssp HHHTTC
T ss_pred HHHhhh
Confidence 877774
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.84 E-value=3.6 Score=34.99 Aligned_cols=105 Identities=9% Similarity=0.039 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHH---HHHHHhhCCCCCCHHHHHHHHHHHHHhccC-C-CCchh
Q 046257 597 VDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEK---AMDIINRMPFAASATVWRTVLAACRLISLQ-P-HDSAI 671 (838)
Q Consensus 597 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~---A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~-P-~~~~~ 671 (838)
+....+.+...... +. |+..+--.+..+|.+..+..+ +..++++. +.-+ | ..-..
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l------------------~~~~~p~~~Rd~ 76 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL------------------LPKGSKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH------------------TTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------------HhcCCcchHHHH
Confidence 34455555554422 22 667777778889999887766 88888876 2223 3 34556
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 046257 672 YVLLSNMYAATGHWQERARVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGY 747 (838)
Q Consensus 672 y~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 747 (838)
.+.|+-.|.+.|++++|.+..+.+.+ .+|...+.....+.+..+|.+.|+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~--------------------------~eP~n~QA~~Lk~~i~~~i~kdGl 126 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKKDGL 126 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHHhccC
Confidence 77888899999999999999999875 245555555555556667777663
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.47 E-value=37 Score=34.33 Aligned_cols=112 Identities=12% Similarity=0.094 Sum_probs=71.4
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHH----HHhhhCCCCCChhhHHHHHHHHhc
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETF----NNMGLAGAELTRSTFVSVIKLCAT 292 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 292 (838)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|.++- +-..+.++++|..+..-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455557888888888887632 234456677776666554 444566788888887777777765
Q ss_pred cCcHH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHcCCChHHHHHHHH
Q 046257 293 TKELR-LARQLHSQVL----KNG--IDFDHNIRTGLMVAYSKCGKMEDASKIFS 339 (838)
Q Consensus 293 ~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 339 (838)
...-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|-
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 54311 1123333333 334 23466777788888888888888888774
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.70 E-value=48 Score=35.30 Aligned_cols=313 Identities=12% Similarity=0.147 Sum_probs=156.9
Q ss_pred CChHHHHHHHHHhhhC-----CCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCChh--HHHHHHHHHHcCCC
Q 046257 259 ELHMEAFETFNNMGLA-----GAELTRSTFVSVIKLCATTKELRLARQLHSQVLKN-GIDFDHN--IRTGLMVAYSKCGK 330 (838)
Q Consensus 259 g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~--~~~~Li~~y~~~g~ 330 (838)
|++++|++.+..+.+. ....+......++..|...++++...+.+..+.+. |...... ..+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 3455555555444321 23334445666666777777776665555444332 2211111 11122222222232
Q ss_pred hH--HHHHHHHhcccCCCeee---------hHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhH
Q 046257 331 ME--DASKIFSMMREMKDVVS---------WTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQ 399 (838)
Q Consensus 331 ~~--~A~~~f~~~~~~~~~~~---------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 399 (838)
.+ .-..+.+.+....+-.. ...|...|...|++.+|.+++.++..+-...+....-
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k------------- 176 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK------------- 176 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH-------------
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH-------------
Confidence 22 22233333321111111 2456788889999999999999987642222222111
Q ss_pred HHHHHHHhhccCCcchhhHHHHHHHHcCCHHHHHHHHHhcCC------CC----cchHHHHHHHHHhcCCchHHHHHHHH
Q 046257 400 VHAHIIKTNYEKSFSVGTALLNAYVKKGILDEAAKVFELIDE------KD----IVAWSAMLAGYAQIGDTEGAVKIYRQ 469 (838)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------~~----~~~~~~li~~~~~~g~~~~A~~l~~~ 469 (838)
+.++...+..|...+++..|..++..+.. ++ ...+..++..+...+++.+|-+.|.+
T Consensus 177 -------------ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e 243 (445)
T 4b4t_P 177 -------------IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQE 243 (445)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11223467788899999999988887642 11 13466677788888999999888887
Q ss_pred hhcC-CCCCCHhhHHHHHH-----HhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhc
Q 046257 470 LTSE-GVKPNEFTFSSVIN-----ACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSKK--GNIESASEVFKRQ 541 (838)
Q Consensus 470 m~~~-g~~p~~~t~~~ll~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~--g~~~~A~~~f~~~ 541 (838)
.... ...-|...+..++. ..... ...+....++.. .+...-++...+..|+.+|... .+++.+.+.|...
T Consensus 244 ~~~~~~~~~d~~~~~~~L~~~v~~~iLa~-~~~~~~~ll~~~-~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 244 IYQTDAIKSDEAKWKPVLSHIVYFLVLSP-YGNLQNDLIHKI-QNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHSS-CSSTTHHHHHSH-HHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHH-hhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 7542 11222222221111 11111 111112222221 1222234566777788888764 3567777777655
Q ss_pred CCCCH---------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 542 RKRDL---------VSWNSMICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 542 ~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
..++. ..|+.|......|+ .. .+. +| +.+++..+.....- ..+++..+...|+.+.
T Consensus 322 L~~~~~~~~~~~~~~~~~~L~~~v~ehn-l~-------~i~----k~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g 387 (445)
T 4b4t_P 322 LNEDDLAFGGEANKHHWEDLQKRVIEHN-LR-------VIS----EYYSRITLLRLNELLDL--TESQTETYISDLVNQG 387 (445)
T ss_dssp TTTCCSSCCCSCSSHHHHHHHHHHHHHH-HH-------HHH----HHEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHT
T ss_pred hcccchhhhcchhhHHHHHHHHHHHHHH-HH-------HHH----HHhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCC
Confidence 43322 23444444333222 01 111 12 34455555544432 4678888888888665
Q ss_pred Cc
Q 046257 612 HI 613 (838)
Q Consensus 612 ~~ 613 (838)
.+
T Consensus 388 ~i 389 (445)
T 4b4t_P 388 II 389 (445)
T ss_dssp SS
T ss_pred CE
Confidence 44
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=82.19 E-value=6.1 Score=33.78 Aligned_cols=76 Identities=7% Similarity=-0.053 Sum_probs=52.5
Q ss_pred CCCChhHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccC--CCchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH
Q 046257 577 LEFDGITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYP--TMEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATV 651 (838)
Q Consensus 577 ~~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~ 651 (838)
-.|+..|-..+..++.++.. +.+|..+++...+.. | ..+..--|.-++.|.|++++|.+..+.+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l-------- 104 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTL-------- 104 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHH--------
Confidence 35565555556666666654 567888888877542 3 2333444667899999999999999976
Q ss_pred HHHHHHHHHHhccCCCCchhHH
Q 046257 652 WRTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 652 w~~ll~~c~~~~l~P~~~~~y~ 673 (838)
++.+|+|..+..
T Consensus 105 ----------L~~eP~N~QA~~ 116 (134)
T 3o48_A 105 ----------FEHERNNKQVGA 116 (134)
T ss_dssp ----------HTTCTTCHHHHH
T ss_pred ----------HhhCCCCHHHHH
Confidence 788887665443
No 243
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.17 E-value=11 Score=30.16 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFI 585 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 585 (838)
..+...|++++|..+.+...-||+..|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567899999999999999999999988765 46677788887777777766 45444454
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.00 E-value=7.1 Score=44.62 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 624 VDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 624 v~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
++-|...|+++-|+++-++. .+.-|.+-.++..|+.+|...|+|+.|+-.++.+-
T Consensus 344 a~FLl~K~~~elAL~~Ak~A------------------V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTS------------------TELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHH------------------HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 45566789999999999876 67789899999999999999999999999999883
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.95 E-value=48 Score=33.18 Aligned_cols=162 Identities=9% Similarity=0.077 Sum_probs=83.8
Q ss_pred HHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH----HHHhhcCCCCCCHhhHHHHHHHhcCCh---
Q 046257 421 NAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKI----YRQLTSEGVKPNEFTFSSVINACTAPS--- 493 (838)
Q Consensus 421 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~~--- 493 (838)
.=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+++++..+...++.-+....
T Consensus 41 ~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~ 109 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSE 109 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCC
Confidence 3366666666666664322 2233444554443332 333344566666665555555443321
Q ss_pred -hhHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CChHHHHH
Q 046257 494 -AAVEQGKQFHACSIKAKL--NNALCVSSALVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQH---GHTKKALE 567 (838)
Q Consensus 494 -~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~~~A~~ 567 (838)
....-......+..+.|- .-|+.....+...|.+.|++.+|+.-|-.....|...+..|+.-+... |...++-
T Consensus 110 ~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d- 188 (312)
T 2wpv_A 110 PNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA- 188 (312)
T ss_dssp TTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH-
T ss_pred chHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH-
Confidence 112222333334444432 247788889999999999999999877633322445555554444333 3333221
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHH
Q 046257 568 VFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMV 608 (838)
Q Consensus 568 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 608 (838)
...-.+++. +.-.|++..|...|+...
T Consensus 189 -------------lf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 189 -------------EFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp -------------HHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 111112222 234667777777777654
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.79 E-value=10 Score=30.24 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=46.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHH
Q 046257 523 TMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFI 585 (838)
Q Consensus 523 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 585 (838)
..+...|++++|..+.+...-||+..|-+|-. .+.|..+++..-+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34667899999999999999999999988765 46788888888887888776 55545554
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.02 E-value=29 Score=30.41 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 046257 158 KMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVTSVCNALI 221 (838)
Q Consensus 158 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~~~~~~li 221 (838)
++.++|.++|+.+++.+-+- ...|..-.+.=.+.|++..|++++...+..+..|....-.++-
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56666777777665532221 3333333344457888889999998888877555444433333
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.39 E-value=12 Score=33.37 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=67.6
Q ss_pred cCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCC-------chHHHHHHHHHhcCCHHHHHHHHhhC--
Q 046257 575 QDLEFDG--ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTM-------EHYSCMVDLYSRAGMLEKAMDIINRM-- 643 (838)
Q Consensus 575 ~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~y~~lv~~l~r~G~~~~A~~~~~~m-- 643 (838)
.|+.|.. .++..-+..+...|.++.|.-+.+.+....+..|+. .++..+.+++...|++.+|...+++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543 344555666677888888877766654333333442 24567789999999999999998773
Q ss_pred -----CCCCCHHHHHHHHHH--HH--HhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 046257 644 -----PFAASATVWRTVLAA--CR--LISLQPHDSAIYVLLSNMYAATGHWQERARVRKLM 695 (838)
Q Consensus 644 -----~~~~~~~~w~~ll~~--c~--~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m 695 (838)
+-.++. .+.++. .. -..+ +.+.+..+.++..|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~---~~~~~~~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV---RPSTGNSASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc---cccccccCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 211211 000000 00 0111 334467788999999999999999998865
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.28 E-value=20 Score=37.36 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCChhHHH----
Q 046257 519 SALVTMYSKKGNIESASEVFKRQRK--------RDLVSWNSMICGYAQHG-HTKKALEVFKEMRRQDLEFDGITFI---- 585 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~---- 585 (838)
..|.+.|.+.|+.++..+++....+ +..-.-..||..+.... ..+.-+++..+..+-. +-+..+|.
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3477889999999999999887652 12345667787776643 3444555555555421 11234553
Q ss_pred --HHHHHHhccCCHHHHHHHHHHHHhcCCccCC----CchHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCHHHHHH
Q 046257 586 --GVITACTHAGLVDEGQQYFDIMVNEHHIYPT----MEHYSCMVDLYSRAGMLEKAMDIINRMP-----FAASATVWRT 654 (838)
Q Consensus 586 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~G~~~~A~~~~~~m~-----~~~~~~~w~~ 654 (838)
-++..+...|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+.+.. +.+++.+-
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-- 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-- 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH--
Confidence 5678889999999999999988765322122 2446677889999999999998887651 11222111
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHH-hcCCchHHHHHHHHH
Q 046257 655 VLAACRLISLQPHDSAIYVLLSNMYA-ATGHWQERARVRKLM 695 (838)
Q Consensus 655 ll~~c~~~~l~P~~~~~y~~l~~~y~-~~g~~~~a~~~~~~m 695 (838)
+.....-+-++. ..++|++|...|-+.
T Consensus 180 --------------a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 --------------GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp --------------HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred --------------HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 112223344566 688888887766544
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.30 E-value=1.3e+02 Score=35.14 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=113.6
Q ss_pred HHHcCCChHHHHHHHHhcccC---CCee--ehHHHHHHHHHcCChHHHHHHHHHhhhcCC--CCC---c-cc---HHHHH
Q 046257 324 AYSKCGKMEDASKIFSMMREM---KDVV--SWTAMISGHLQNGAIDLAVNFFCQMTREGV--RPN---G-FT---YSIIL 389 (838)
Q Consensus 324 ~y~~~g~~~~A~~~f~~~~~~---~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd---~-~t---~~~ll 389 (838)
+....|+.+++..+++..... .+.. .-..+.-|....|..+++++++.......- .-+ . .. ...+=
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345567777777777766521 1111 122233455666666677777766554311 000 0 11 11111
Q ss_pred hhCCCCChhHHHHHHHHhhccCCcchh----hHHHHHHHHcCCHHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCchH
Q 046257 390 TAQPAVSPFQVHAHIIKTNYEKSFSVG----TALLNAYVKKGILDEAAKVFELIDE--KD-IVAWSAMLAGYAQIGDTEG 462 (838)
Q Consensus 390 ~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~Li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~ 462 (838)
-++...++-++...+...-...+..+. -+|.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 223333333333333333222222221 1222333444665555555554332 11 1222333344556778777
Q ss_pred HHHHHHHhhcCCCCCCHh-hHHH---HHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH--hcCCHHHHHH
Q 046257 463 AVKIYRQLTSEGVKPNEF-TFSS---VINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYS--KKGNIESASE 536 (838)
Q Consensus 463 A~~l~~~m~~~g~~p~~~-t~~~---ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~--k~g~~~~A~~ 536 (838)
+..+.+.+... .+.. -|.. +--+|+.. |+....+.+...+.... +..+-.+.+-+.+ -.|+.+.+.+
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGT-Gn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGT-GNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 77777776652 2222 2221 22345555 66666665666555421 1122222222233 3555555666
Q ss_pred HHHhcC-CCCHHH--HHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCChhH
Q 046257 537 VFKRQR-KRDLVS--WNSMICGYAQHGHT-KKALEVFKEMRRQDLEFDGIT 583 (838)
Q Consensus 537 ~f~~~~-~~~~~~--~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~t 583 (838)
+++.+. ..|... --++.-|....|.. .+|++++..+.. .+|..+
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 665443 233322 22233344444443 567777777764 445443
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=75.11 E-value=17 Score=31.44 Aligned_cols=75 Identities=7% Similarity=-0.042 Sum_probs=52.8
Q ss_pred CCChhHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCccCC--CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHH
Q 046257 578 EFDGITFIGVITACTHAGL---VDEGQQYFDIMVNEHHIYPT--MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVW 652 (838)
Q Consensus 578 ~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w 652 (838)
.|+..|-..+..++.++.. +.+|..+++...+. .|. .+..--|.-++.|.|++++|+++.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l--------- 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL--------- 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHH---------
Confidence 4666555556667776654 56788898888753 232 223334567899999999999999987
Q ss_pred HHHHHHHHHhccCCCCchhHH
Q 046257 653 RTVLAACRLISLQPHDSAIYV 673 (838)
Q Consensus 653 ~~ll~~c~~~~l~P~~~~~y~ 673 (838)
++.+|+|..+..
T Consensus 104 ---------L~~eP~n~QA~~ 115 (144)
T 1y8m_A 104 ---------FEHERNNKQVGA 115 (144)
T ss_dssp ---------HHTCCCCHHHHH
T ss_pred ---------HhcCCCcHHHHH
Confidence 889997765443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.40 E-value=7.6 Score=40.81 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=36.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHhccCCHHHHHHHHHHHH----hcCCccCCCchH
Q 046257 552 MICGYAQHGHTKKALEVFKEMRRQDLEF-DGITFIGVITACTHAGLVDEGQQYFDIMV----NEHHIYPTMEHY 620 (838)
Q Consensus 552 li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~y 620 (838)
++..+...|++++|+..++.+.. ..| +...+..++.++...|+..+|++.|+... ++.|+.|..++-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44455555555555555555554 233 34455555555556666666655555432 245666666543
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.23 E-value=43 Score=28.99 Aligned_cols=91 Identities=8% Similarity=0.038 Sum_probs=65.0
Q ss_pred cCCCchHHHHHHHHHhcCCHH---HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCCchHHH
Q 046257 614 YPTMEHYSCMVDLYSRAGMLE---KAMDIINRMPFAASATVWRTVLAACRLISLQPH-DSAIYVLLSNMYAATGHWQERA 689 (838)
Q Consensus 614 ~p~~~~y~~lv~~l~r~G~~~---~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~-~~~~y~~l~~~y~~~g~~~~a~ 689 (838)
.|+..+--.+.++|.+..+.+ ++..++++. +.-+|. .-...+.|+-.|.+.|++++|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l------------------~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDI------------------YKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHH------------------HHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH------------------HhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 466666666788898888654 566666655 344563 4556678888999999999999
Q ss_pred HHHHHHhhCCCccCCceeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 046257 690 RVRKLMNDRKVKKEAGYSWIEVKNKTYSFLAGDISHPQSNQIYSKLEELSTRLKDAGYK 748 (838)
Q Consensus 690 ~~~~~m~~~g~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 748 (838)
+..+.+-+. .|...+.....+.+..+|.+.|++
T Consensus 98 ~y~d~lL~~--------------------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 98 RYVDTLFEH--------------------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp HHHHHHHHT--------------------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhc--------------------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 999988762 455555555555567788888865
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.82 E-value=92 Score=33.08 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=64.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhc-CCccCC---CchHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 046257 585 IGVITACTHAGLVDEGQQYFDIMVNE-HHIYPT---MEHYSCMVDLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACR 660 (838)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~---~~~y~~lv~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~ 660 (838)
..|...+...|++.+|..++..+..+ ++..+. .+.|..-+.+|...|++..|..+++++.. +
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~--------------~ 206 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK--------------K 206 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------h
Confidence 34566677788888888888776533 232222 34566778888899999999988887510 0
Q ss_pred HhccCCC---CchhHHHHHHHHHhcCCchHHHHHHHHHh
Q 046257 661 LISLQPH---DSAIYVLLSNMYAATGHWQERARVRKLMN 696 (838)
Q Consensus 661 ~~~l~P~---~~~~y~~l~~~y~~~g~~~~a~~~~~~m~ 696 (838)
.+...|. -...|..++.++...++|.+|.+.|...-
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 0111110 12467788888899999998888777664
No 255
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.05 E-value=21 Score=28.67 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 046257 261 HMEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLM 322 (838)
Q Consensus 261 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 322 (838)
.-+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .....+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 34556666777777789999999999999999999999999998876543 22244555554
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.95 E-value=15 Score=38.49 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCChhH
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEMRR-----QDLEFDGIT 583 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 583 (838)
....+++.+...|+.++|......+. +-+...|-.+|.+|...|+..+|++.|++..+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44567777888888888887776654 34777888888888888888888888887654 488887654
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=71.48 E-value=17 Score=41.50 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 046257 522 VTMYSKKGNIESASEVFKRQR---KRDLVSWNSMICGYAQHGHTKKALEVFKEM 572 (838)
Q Consensus 522 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 572 (838)
.+.+.+.|+++.|+++-++.. +-+-.+|-.|...|...|+++.|+-.++-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344556788888888887765 446788888888888888888888887765
No 258
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.85 E-value=39 Score=27.00 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHh
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 271 (838)
....++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||..+|-++-. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456677777776666553 33333344455677899999999999999999999988865 4778888888888777
Q ss_pred hhCCCCCChhhHH
Q 046257 272 GLAGAELTRSTFV 284 (838)
Q Consensus 272 ~~~g~~p~~~t~~ 284 (838)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 34433443
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.73 E-value=41 Score=26.93 Aligned_cols=88 Identities=14% Similarity=0.042 Sum_probs=60.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHh
Q 046257 192 EGIVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271 (838)
Q Consensus 192 ~g~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 271 (838)
....++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||..+|-++-.. +.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3456677777777666553 333333444556778999999999999999999999988654 567777777777777
Q ss_pred hhCCCCCChhhHH
Q 046257 272 GLAGAELTRSTFV 284 (838)
Q Consensus 272 ~~~g~~p~~~t~~ 284 (838)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6655 34433443
No 260
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.28 E-value=53 Score=32.27 Aligned_cols=118 Identities=10% Similarity=0.041 Sum_probs=60.6
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHcCCChHHHHHHHHhccc--CCCeeehHHHHHHHHHcCC
Q 046257 286 VIKLCATTKELRLARQLHSQVLKNGIDFDHN-IRTGLMVAYSKCGKMEDASKIFSMMRE--MKDVVSWTAMISGHLQNGA 362 (838)
Q Consensus 286 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~ 362 (838)
.+...+..|+.+. .+.+++.|..+... ...+.+...+..|..+-+..+++.-.. ..|..-++..+...++.|+
T Consensus 132 ~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~ 207 (285)
T 3kea_A 132 SFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD 207 (285)
T ss_dssp HHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC
T ss_pred HHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC
Confidence 3334444555443 33344445333221 334445555667777766666654321 3344445543444455566
Q ss_pred hHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCcchh
Q 046257 363 IDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSFSVG 416 (838)
Q Consensus 363 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (838)
. ++.+.+.+.|..|+..... + ...+..++...+++.|.+.+...+
T Consensus 208 ~----~~v~~Ll~~gad~~~~~~~----a-~~~~~~~iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 208 I----EMLQALFKYDINIYSANLE----N-VLLDDAEIAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp H----HHHHHHTTSCBCSTTTTGG----G-GTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred H----HHHHHHHHcCCCCCCCChh----h-hhcCCHHHHHHHHHcCCCCCCccc
Confidence 3 4555566778877766531 1 224455677777777765544333
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.21 E-value=2.1e+02 Score=34.77 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=40.3
Q ss_pred hhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 046257 415 VGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGDTEGAVKIYRQLT 471 (838)
Q Consensus 415 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 471 (838)
....++..+.+.+..+-|.++..-.+. +...--.+...|...|++++|.+.|.+.-
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 344567777788888888877665544 43333456677888999999999998764
No 262
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.76 E-value=53 Score=31.76 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHcCCChHHHHHHHHh
Q 046257 285 SVIKLCATTKELRLARQLHSQVLKNGIDFDHN---IRTGLMVAYSKCGKMEDASKIFSM 340 (838)
Q Consensus 285 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~~g~~~~A~~~f~~ 340 (838)
+.+...++.|+++..+.+ ++.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 344455566776654444 3445443322 122344555566666666666554
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.97 E-value=67 Score=33.42 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC----CCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCChhHHHHH
Q 046257 519 SALVTMYSKKGNIESASEVFKRQR----KRD-----LVSWNSMICGYAQHGHTKKALEVFKEMRRQ--DLEFDGITFIGV 587 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~----~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~l 587 (838)
.-|++.|...|++.+|.+++.++. ..| +..+-.-+..|...|+..++...+...... .+.|++..- +.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~ 181 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GA 181 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HH
Confidence 357788889999999988877665 211 133555667788888888888888776542 232443221 22
Q ss_pred HH-----HHh-ccCCHHHHHHHHHHHHh
Q 046257 588 IT-----ACT-HAGLVDEGQQYFDIMVN 609 (838)
Q Consensus 588 l~-----a~~-~~g~~~~a~~~~~~m~~ 609 (838)
+. .+. ..+++++|...|-...+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22 234 67888888888876643
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=67.56 E-value=29 Score=27.94 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 562 TKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 562 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
.-+..+-++.+...++-|++....+.|.||.+..++.-|.++|+..+.+.+ +....|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 334555566666777889998999999999999999999999988875543 33456776654
No 265
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.83 E-value=1.7e+02 Score=32.82 Aligned_cols=83 Identities=8% Similarity=-0.038 Sum_probs=46.7
Q ss_pred HHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCChhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--
Q 046257 450 MLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAPSAAVEQGKQFHACSIKAKLNNALCVSSALVTMYSK-- 527 (838)
Q Consensus 450 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k-- 527 (838)
....+.-.|++|.|++.+.+. ...+.+.+...|.-+.-+ +. +..+...- .+ .+ ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL-~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLF-KI---DSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCc-cC---CCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 445566689999999987655 356777777777766444 21 11111110 01 11 2235567777765
Q ss_pred -cCCHHHHHHHHHhcCCC
Q 046257 528 -KGNIESASEVFKRQRKR 544 (838)
Q Consensus 528 -~g~~~~A~~~f~~~~~~ 544 (838)
.++..+|.++|--+..+
T Consensus 368 ~~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTTCHHHHHHHHHGGGGS
T ss_pred hcCCHHHHHHHHHHHhcc
Confidence 57888899888766533
No 266
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=64.64 E-value=78 Score=33.25 Aligned_cols=79 Identities=5% Similarity=-0.046 Sum_probs=36.9
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCccc--HHHHHHHhccCCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCCh
Q 046257 54 CRDSLHQEALNLFLGIRRLGLPLFGST--LSSVLKTCGCLFDHVFGRQVHCECVKSGFARDVN--VSTSLVDLYMRTNNV 129 (838)
Q Consensus 54 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~ 129 (838)
+..|+.+- ++.+.+.|..++... ..+.|...+..|+.+.++.+ ++.|...+.. .....+...++.|+.
T Consensus 22 a~~g~~~~----v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~ 93 (437)
T 1n11_A 22 SFMGHLPI----VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHT 93 (437)
T ss_dssp HHHTCHHH----HHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred HHCCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence 34555543 333444555444321 12233444455666544444 4555443321 112234444566777
Q ss_pred HHHHHHHccCC
Q 046257 130 EDGRRVFDDMN 140 (838)
Q Consensus 130 ~~A~~~f~~m~ 140 (838)
+-+.-+++.-.
T Consensus 94 ~~v~~Ll~~ga 104 (437)
T 1n11_A 94 NMVKLLLENNA 104 (437)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHhCCC
Confidence 76666666533
No 267
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=64.30 E-value=1.2e+02 Score=33.90 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=39.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhc-cCCcchhhHHHHHHHH---cCC
Q 046257 353 MISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNY-EKSFSVGTALLNAYVK---KGI 428 (838)
Q Consensus 353 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~Li~~y~~---~g~ 428 (838)
....+.-.|++|.|++++.+. ...|.+.+...|..+.-... ...++.... .+ ..-+..||..|.+ ..+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~-~lN~arLI~~Yt~~F~~td 371 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKKPKR-DIRFANILANYTKSFRYSD 371 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC---------------------CHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCCCcc-cccHHHHHHHHHHHhhcCC
Confidence 344555678888888877654 34566666666665443332 111110000 11 1112456666654 456
Q ss_pred HHHHHHHHHhcC
Q 046257 429 LDEAAKVFELID 440 (838)
Q Consensus 429 ~~~A~~~f~~~~ 440 (838)
..+|...|-.+.
T Consensus 372 ~~~Al~Y~~li~ 383 (661)
T 2qx5_A 372 PRVAVEYLVLIT 383 (661)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh
Confidence 777777666553
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.24 E-value=20 Score=34.80 Aligned_cols=23 Identities=4% Similarity=0.156 Sum_probs=18.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhhC
Q 046257 676 SNMYAATGHWQERARVRKLMNDR 698 (838)
Q Consensus 676 ~~~y~~~g~~~~a~~~~~~m~~~ 698 (838)
++.....|+.++|.+++....+.
T Consensus 107 Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 107 FNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHhc
Confidence 45566789999999999999654
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.14 E-value=11 Score=36.68 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=47.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 046257 625 DLYSRAGMLEKAMDIINRMPFAASATVWRTVLAACRLISLQPHDSAIYVLLSNMYAATGHWQERARVRKLMND 697 (838)
Q Consensus 625 ~~l~r~G~~~~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~~~~~y~~l~~~y~~~g~~~~a~~~~~~m~~ 697 (838)
.-+.+.|.+++|++.+..- +.-+|.|...-..|..+|+-.|+|+.|.+-++...+
T Consensus 5 ~~ll~~g~L~~al~~~~~~------------------VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEA------------------IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHH------------------HHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHH------------------HHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3466889999999888765 677899999999999999999999999998888765
No 270
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=59.76 E-value=49 Score=28.23 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=49.0
Q ss_pred ccCCCchHHHHHHHHHhcCCHH---HHHHHHhhCCCCCCHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHhcCCchHH
Q 046257 613 IYPTMEHYSCMVDLYSRAGMLE---KAMDIINRMPFAASATVWRTVLAACRLISLQPH-DSAIYVLLSNMYAATGHWQER 688 (838)
Q Consensus 613 ~~p~~~~y~~lv~~l~r~G~~~---~A~~~~~~m~~~~~~~~w~~ll~~c~~~~l~P~-~~~~y~~l~~~y~~~g~~~~a 688 (838)
-.|++.+--.+.++|.+....+ ++..++++. +.-+|. .......|+-.|.+.|++++|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l------------------~~~~~~~~Rd~LYyLAvg~yklgdY~~A 97 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDI------------------YKEAESRRRECLYYLTIGCYKLGEYSMA 97 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------------------HHHCGGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHH------------------HhcCcchhHHHHHHHHHHHHHhhhHHHH
Confidence 3466666556778888887654 566666654 444563 456677888899999999999
Q ss_pred HHHHHHHhh
Q 046257 689 ARVRKLMND 697 (838)
Q Consensus 689 ~~~~~~m~~ 697 (838)
.+..+.+-+
T Consensus 98 r~y~d~lL~ 106 (134)
T 3o48_A 98 KRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.99 E-value=95 Score=29.02 Aligned_cols=85 Identities=9% Similarity=-0.084 Sum_probs=37.5
Q ss_pred HHHHhCCChHHHHHHHHHhhhCCCCCChhh--HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHcC
Q 046257 253 AGYVTNELHMEAFETFNNMGLAGAELTRST--FVSVIKLCATTKELRLARQLHSQVLKNGIDFDHN--IRTGLMVAYSKC 328 (838)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~ 328 (838)
...++.|+.+-...+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++.. .....+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 344556666666666665555554444321 112233333445544 333344455443321 111223333445
Q ss_pred CChHHHHHHHHhc
Q 046257 329 GKMEDASKIFSMM 341 (838)
Q Consensus 329 g~~~~A~~~f~~~ 341 (838)
|+.+-...+++..
T Consensus 90 ~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 90 RSPTCLRALLDSA 102 (241)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 5555555555443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=57.06 E-value=52 Score=28.08 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 046257 263 EAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRTGLM 322 (838)
Q Consensus 263 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 322 (838)
+..+-++.+....+.|++......|++|.+.+|+..|.++++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455566667777889999999999999999999999999999887543 23344565554
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=56.93 E-value=1.4e+02 Score=28.60 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFE 437 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~ 437 (838)
+.+...++.|..+-+..+++
T Consensus 221 t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 221 TPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHh
Confidence 34444555666666665555
No 274
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.42 E-value=60 Score=31.89 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 046257 418 ALLNAYVKKGILDEAAKVFE 437 (838)
Q Consensus 418 ~Li~~y~~~g~~~~A~~~f~ 437 (838)
+.+...+..|..+-+..+++
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHcChHHHHHHHHH
Confidence 33444445555555555544
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=53.13 E-value=63 Score=27.59 Aligned_cols=60 Identities=12% Similarity=0.191 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHH
Q 046257 564 KALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVD 625 (838)
Q Consensus 564 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 625 (838)
+..+-++.+...++-|+.....+.|.||.+..++.-|.++|+..+.+. .+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344555666667788999999999999999999999999999887554 344566776654
No 276
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=52.42 E-value=1.8e+02 Score=30.36 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=63.9
Q ss_pred HHHhccCCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHccCCC---CCcchHHHHHHHHHhCCC
Q 046257 85 LKTCGCLFDHVFGRQVHCECVKSGFARDVN--VSTSLVDLYMRTNNVEDGRRVFDDMNE---SNVVSWTSLLSGYARNKM 159 (838)
Q Consensus 85 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 159 (838)
|...+..|+++..+.+ ++.|..++.. .....+...++.|+.+-+..+++.-.. +|...++.|. ..++.|+
T Consensus 18 L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH-CAARIGH 92 (437)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH-HHHHHTC
T ss_pred HHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH-HHHHCCC
Confidence 3334456676655544 5566555432 122334455667888877777765333 2222333333 3334555
Q ss_pred chHHHHHHHHHHHCCCCCChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCch--hHHHHHHHHhHcCCChhHHH
Q 046257 160 NDRVLELFHRMQVEGIKPNSF---TFSTVLGVLADEGIVATAVQVHTMVIKNGGEVVT--SVCNALISMYLKSKMVRDAR 234 (838)
Q Consensus 160 ~~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~ 234 (838)
.+ +.+.+.+.|..|+.. ..+ .+...+..|+.+..+.++ +.+...+. ....+.+...++.|+.+-+.
T Consensus 93 ~~----~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 163 (437)
T 1n11_A 93 TN----MVKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAE 163 (437)
T ss_dssp HH----HHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HH----HHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence 43 333334445444322 122 233333445555444433 33322211 01112333445556666666
Q ss_pred HHHhc
Q 046257 235 AVFDG 239 (838)
Q Consensus 235 ~~f~~ 239 (838)
.+++.
T Consensus 164 ~Ll~~ 168 (437)
T 1n11_A 164 LLLER 168 (437)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 65554
No 277
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.72 E-value=1e+02 Score=37.51 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHhHcCCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHh
Q 046257 219 ALISMYLKSKMVRDARAVFDGMEDRDSITWNSMVAGYVTNELHMEAFETFNNM 271 (838)
Q Consensus 219 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 271 (838)
.++..+.+.+..+.|.++..-.+. +..+--.+...|...|++++|.+.|.+.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455556666777777776555443 4333344556788889999999999764
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.47 E-value=1.4e+02 Score=27.86 Aligned_cols=18 Identities=0% Similarity=0.089 Sum_probs=10.2
Q ss_pred HHHhHcCCChhHHHHHHh
Q 046257 221 ISMYLKSKMVRDARAVFD 238 (838)
Q Consensus 221 i~~y~~~g~~~~A~~~f~ 238 (838)
+...++.|+.+....+++
T Consensus 13 L~~A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344455666666666654
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.27 E-value=53 Score=34.75 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCChhHH--H
Q 046257 517 VSSALVTMYSKKGNIESASEVFKRQR------KRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQ---DLEFDGITF--I 585 (838)
Q Consensus 517 ~~~~li~~y~k~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~--~ 585 (838)
....+.+.|.++|+++.|.+.|.++. ..-+..|-..|..+...+++..+...+++.... +-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45668888999999999999998876 223456777888888899999999888887542 323332211 1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcC
Q 046257 586 GVITACTHAGLVDEGQQYFDIMVNEH 611 (838)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~m~~~~ 611 (838)
.-...+...+++.+|.+.|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11222456788888888887766443
No 280
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.73 E-value=1.8e+02 Score=26.75 Aligned_cols=19 Identities=0% Similarity=-0.088 Sum_probs=8.8
Q ss_pred HHHhHcCCChhHHHHHHhc
Q 046257 221 ISMYLKSKMVRDARAVFDG 239 (838)
Q Consensus 221 i~~y~~~g~~~~A~~~f~~ 239 (838)
+...++.|+.+-+..+++.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3334444555544444443
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.03 E-value=1.8e+02 Score=26.47 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHhccCCHHHH
Q 046257 521 LVTMYSKKGNIESASEVFKRQRKRDLVSWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDGITFIGVITACTHAGLVDEG 600 (838)
Q Consensus 521 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 600 (838)
.+..+++.|+.+....+.+.+..++...-...+.++...|+. +++..+.++.+ .||...-...+.++...|. .++
T Consensus 101 a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 101 AAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhH
Confidence 333344444433233333333344444444444444444442 23333434332 3344444444444444444 334
Q ss_pred HHHHHHHH
Q 046257 601 QQYFDIMV 608 (838)
Q Consensus 601 ~~~~~~m~ 608 (838)
...+..+.
T Consensus 176 ~~~L~~~l 183 (211)
T 3ltm_A 176 RAAMEKLA 183 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.71 E-value=2e+02 Score=26.51 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=49.3
Q ss_pred HHHHHHHhcC--CCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHH
Q 046257 533 SASEVFKRQR--KRDLV---SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDI 606 (838)
Q Consensus 533 ~A~~~f~~~~--~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~ 606 (838)
.+.+.|.... ..|+. .|-..+..+ ..+...++.++|..|...|+--.. .-|......+...|++++|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444454443 33443 344444433 234466788888888888776653 3466666667777888888888877
Q ss_pred HHhcCCccC
Q 046257 607 MVNEHHIYP 615 (838)
Q Consensus 607 m~~~~~~~p 615 (838)
-++ .+-+|
T Consensus 141 GI~-~~A~P 148 (202)
T 3esl_A 141 GAE-NNCRP 148 (202)
T ss_dssp HHH-TTCBS
T ss_pred HHH-cCCcc
Confidence 763 34455
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.60 E-value=47 Score=35.20 Aligned_cols=96 Identities=8% Similarity=-0.023 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHH----
Q 046257 548 SWNSMICGYAQHGHTKKALEVFKEMRRQDLEFDG--ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYS---- 621 (838)
Q Consensus 548 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~---- 621 (838)
++..+..-|.+.|+.++|.+.|.++.+.-..+.. ..+..++..|...+++..+..+.+.......-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677889999999999999999999986555554 4577888999999999999999988764332233333221
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC
Q 046257 622 CMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 622 ~lv~~l~r~G~~~~A~~~~~~m 643 (838)
+-+-.+...+++.+|-+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2223344678899888777654
No 284
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.86 E-value=7.8 Score=24.83 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=10.4
Q ss_pred cccc-CCccccCCCC
Q 046257 824 FHHF-KEGLCSCGDY 837 (838)
Q Consensus 824 ~h~~-~~g~csc~~~ 837 (838)
=|.. .+|.||||-|
T Consensus 15 PHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 15 PHRLNSLGGCRCGKY 29 (42)
T ss_dssp TSCCCTTSSBTTTTB
T ss_pred CceecCCceeccccc
Confidence 3444 5899999976
No 285
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.79 E-value=2e+02 Score=25.84 Aligned_cols=42 Identities=0% Similarity=-0.054 Sum_probs=16.4
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcchHHHHHHHHHhCCC
Q 046257 118 SLVDLYMRTNNVEDGRRVFDDMNESNVVSWTSLLSGYARNKM 159 (838)
Q Consensus 118 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 159 (838)
..+..+.+.|..+....+.+.+..+|...-...+.++.+.|.
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333333433333333333334444433344444444443
No 286
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.15 E-value=2.2e+02 Score=25.55 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=24.6
Q ss_pred cCCcchhhHHHHHHHHcCCHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 046257 410 EKSFSVGTALLNAYVKKGILDEAAKVFELIDEKDIVAWSAMLAGYAQIGD 459 (838)
Q Consensus 410 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 459 (838)
.++..+....+..+.+.|..+....+.+.+..++...-...+.++.+.|.
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 34444445555555666654444445555544544443444444444443
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.84 E-value=2.1e+02 Score=29.12 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhc
Q 046257 447 WSAMLAGYAQIGDTEGAVKIYRQLTS 472 (838)
Q Consensus 447 ~~~li~~~~~~g~~~~A~~l~~~m~~ 472 (838)
.+.++.-|...|+.+||.+.++++..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccC
Confidence 57788899999999999999999864
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=37.47 E-value=4.6e+02 Score=29.00 Aligned_cols=163 Identities=8% Similarity=0.031 Sum_probs=84.5
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCcc-cHHHHHHHhccCCChhhHHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCChHH
Q 046257 54 CRDSLHQEALNLFLGIRRLGLPLFGS-TLSSVLKTCGCLFDHVFGRQVHCECVKSG-FARDVNVSTSLVDLYMRTNNVED 131 (838)
Q Consensus 54 ~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~ 131 (838)
.+.|++..+..+-..|.. .+..++ .|..+..... ..... ++...+.+.. .+.....-+.-+..+.+.+++..
T Consensus 17 ~~~~~~~~~~~l~~~l~~--~pL~~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKD--YPLYPYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHTTCHHHHHHHSGGGTT--STTHHHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHCCCHHHHHHHHHhhcC--CCcHHHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 456777766666554432 122111 2333332221 11222 3433333332 22222344555677788899999
Q ss_pred HHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 046257 132 GRRVFDDMNESNVVSWTSLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEGIVATAVQVHTMVIKNGGE 211 (838)
Q Consensus 132 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~l~~~~~~~g~~ 211 (838)
....+.. +..+...-.....+....|+..+|......+-..|.. .......++..+.+.|.+
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l---------------- 152 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ---------------- 152 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS----------------
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC----------------
Confidence 8887776 4334444455667777889888888877777555532 233344444444433322
Q ss_pred CchhHHHHHHHHhHcCCChhHHHHHHhcCC
Q 046257 212 VVTSVCNALISMYLKSKMVRDARAVFDGME 241 (838)
Q Consensus 212 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 241 (838)
.+..++. -+......|+...|..+...++
T Consensus 153 t~~~~~~-R~~~al~~~~~~~a~~l~~~l~ 181 (618)
T 1qsa_A 153 DPLAYLE-RIRLAMKAGNTGLVTVLAGQMP 181 (618)
T ss_dssp CHHHHHH-HHHHHHHTTCHHHHHHHHHTCC
T ss_pred CHHHHHH-HHHHHHHCCCHHHHHHHHHhCC
Confidence 2222222 2344455667777777766663
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.14 E-value=2.7e+02 Score=28.39 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=43.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCC--chHHHHHHHHhhcCCCCCCHh
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKD---IVAWSAMLAGYAQIGD--TEGAVKIYRQLTSEGVKPNEF 480 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 480 (838)
+.++.-|...|+.++|.+.++++..+. .+...++..++-+.++ .+...+++..+...|+-+...
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 568888999999999999999998763 2334455555554433 345777888887776554443
No 290
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.46 E-value=1.6e+02 Score=29.80 Aligned_cols=16 Identities=0% Similarity=-0.101 Sum_probs=7.7
Q ss_pred HHHcCCHHHHHHHHHh
Q 046257 423 YVKKGILDEAAKVFEL 438 (838)
Q Consensus 423 y~~~g~~~~A~~~f~~ 438 (838)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445555555544443
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=34.11 E-value=2.7e+02 Score=25.25 Aligned_cols=18 Identities=0% Similarity=-0.042 Sum_probs=7.1
Q ss_pred CCCcchHHHHHHHHHhCC
Q 046257 141 ESNVVSWTSLLSGYARNK 158 (838)
Q Consensus 141 ~~~~~~~~~li~~~~~~g 158 (838)
.+|...-...+.++.+.+
T Consensus 61 ~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIG 78 (211)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhC
Confidence 344333333344444443
No 292
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.81 E-value=1.6e+02 Score=28.58 Aligned_cols=17 Identities=6% Similarity=-0.257 Sum_probs=0.0
Q ss_pred HHHHHhHcCCChhHHHH
Q 046257 219 ALISMYLKSKMVRDARA 235 (838)
Q Consensus 219 ~li~~y~~~g~~~~A~~ 235 (838)
+.+...+..|+.++..+
T Consensus 17 ~~lH~Aa~~g~~~~~~~ 33 (285)
T 3d9h_A 17 RGSHMASMDGKQGGMDG 33 (285)
T ss_dssp -----------------
T ss_pred HHHHHHhhcCCCCCccc
Confidence 34444455555544444
No 293
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.44 E-value=1.1e+02 Score=31.02 Aligned_cols=15 Identities=0% Similarity=0.038 Sum_probs=7.0
Q ss_pred HcCCChHHHHHHHHh
Q 046257 326 SKCGKMEDASKIFSM 340 (838)
Q Consensus 326 ~~~g~~~~A~~~f~~ 340 (838)
++.|..+-+..+++.
T Consensus 252 ~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 252 VRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTCCHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHc
Confidence 344555544444443
No 294
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=31.56 E-value=2.2e+02 Score=26.20 Aligned_cols=18 Identities=6% Similarity=-0.080 Sum_probs=9.0
Q ss_pred HHhHcCCChhHHHHHHhc
Q 046257 222 SMYLKSKMVRDARAVFDG 239 (838)
Q Consensus 222 ~~y~~~g~~~~A~~~f~~ 239 (838)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555543
No 295
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=31.44 E-value=16 Score=23.59 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.0
Q ss_pred cccccCcchhhH
Q 046257 794 NLRVCGDCHTVI 805 (838)
Q Consensus 794 n~~~c~~ch~~~ 805 (838)
+-|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999999644
No 296
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=31.42 E-value=14 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.7
Q ss_pred cceEEEecCCcccccCCccccCC
Q 046257 813 RRDIVVRDTNRFHHFKEGLCSCG 835 (838)
Q Consensus 813 ~r~~~~rd~~~~h~~~~g~csc~ 835 (838)
...|=+.|.+..|+|+||+-+-.
T Consensus 7 ~k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEEBTTSCEEEEETTSCEEEE
T ss_pred eeeEecCCCcEEEEEcCCceehh
Confidence 34678899999999999986543
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.35 E-value=1.5e+02 Score=24.93 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCCCC---cchHHHHHHHHHhCCC--hHHHHHHHHHhhhCCCCC
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMEDRD---SITWNSMVAGYVTNEL--HMEAFETFNNMGLAGAEL 278 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 278 (838)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3556777777788888888888776542 2233444444444432 345667777776666433
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.34 E-value=2.2e+02 Score=25.37 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=9.1
Q ss_pred HhCCChHHHHHHHccC
Q 046257 124 MRTNNVEDGRRVFDDM 139 (838)
Q Consensus 124 ~~~g~~~~A~~~f~~m 139 (838)
+..|+.+....++..-
T Consensus 13 ~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHTTCHHHHHHHHTCT
T ss_pred HHhccHHHHHHHHHcC
Confidence 4456666666666543
No 299
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=31.18 E-value=2.5e+02 Score=27.82 Aligned_cols=284 Identities=6% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCCCcchHH---HHHHHHHhCCCchHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 046257 117 TSLVDLYMRTNNVEDGRRVFDDMNESNVVSWT---SLLSGYARNKMNDRVLELFHRMQVEGIKPNSFTFSTVLGVLADEG 193 (838)
Q Consensus 117 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 193 (838)
+.++..-++.|+++-+..+++.=..+|...-. +-+...++.|+ .++.+.+.+.|..|+...............
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR----EDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC----HHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHcCCChhHHHHHHhcCCCCCcchHH------------HHHHHHHhCCCh
Q 046257 194 IVATAVQVHTMVIKNGGEVVTSVCNALISMYLKSKMVRDARAVFDGMEDRDSITWN------------SMVAGYVTNELH 261 (838)
Q Consensus 194 ~~~~a~~l~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~n------------~li~~~~~~g~~ 261 (838)
...........-....+........+.+...+..|..+-+..+++.-...+..... +-+...++.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Q ss_pred HHHHHHHHHhhhCCCCCChhhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHcCCChHHHHHHHH
Q 046257 262 MEAFETFNNMGLAGAELTRSTFVSVIKLCATTKELRLARQLHSQVLKNGIDFDHNIRT--GLMVAYSKCGKMEDASKIFS 339 (838)
Q Consensus 262 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~Li~~y~~~g~~~~A~~~f~ 339 (838)
+-+..++.+....--..|..-.+.+..++.. +.......+.+.+++.|..++..... +-+...+..|..+.+..++.
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Q ss_pred hccc---CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCcccHHHHHhhCCCCChhHHHHHHHHhhccCCc
Q 046257 340 MMRE---MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNGFTYSIILTAQPAVSPFQVHAHIIKTNYEKSF 413 (838)
Q Consensus 340 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 413 (838)
.-.. ..|..-++.|..+..... .++.+.+.+.|..+|..+ .+......+..++...+++.|-.+|.
T Consensus 261 ~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 261 QEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp STTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred hcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHCcCCCCC
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.66 E-value=1.6e+02 Score=31.63 Aligned_cols=119 Identities=16% Similarity=0.190 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCH-H------HHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HH
Q 046257 515 LCVSSALVTMYSKKGNIESASEVFKRQRKRDL-V------SWN-SMICGYAQHGHTKKALEVFKEMRRQDLEFDGI--TF 584 (838)
Q Consensus 515 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~------~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~ 584 (838)
..+.|.++..|...+.++.|.++..+..-|.. . .|. -+...+...+++.+|.+.|.+.... .+++.. -|
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhhhhH
Confidence 46778899999999999999999998875422 2 222 2345567789999999999988763 222221 11
Q ss_pred -------HHHHHHHhccCCHHHHHHHHHHHHhcCCccCCCchHHHHHHHHHhcCCHHHHHHHHhh
Q 046257 585 -------IGVITACTHAGLVDEGQQYFDIMVNEHHIYPTMEHYSCMVDLYSRAGMLEKAMDIINR 642 (838)
Q Consensus 585 -------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~G~~~~A~~~~~~ 642 (838)
..++..+ .|.+.+ ..+|. .++.+....-|..|+.++ |.|++++-.+.+++
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 1111111 344332 12221 122222223477777776 77888776666654
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.89 E-value=2.3e+02 Score=28.12 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhcCCCCCCHhhHHHHHHHhcCC-hhhHHHHHHHHHHHHHhcCCC
Q 046257 447 WSAMLAGYAQIGDTEGAVKIYRQLTSEGVKPNEFTFSSVINACTAP-SAAVEQGKQFHACSIKAKLNN 513 (838)
Q Consensus 447 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-~~~~~~~~~~~~~~~~~~~~~ 513 (838)
.+.++.-|...|+.+||.+.++++......+ .+....+..+.-+. ....+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4678888989999999999999986321111 12333333344332 123444445555555555443
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.34 E-value=4.3e+02 Score=26.16 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=43.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHhhcCCCCCCH
Q 046257 417 TALLNAYVKKGILDEAAKVFELIDEKDI---VAWSAMLAGYAQIGD--TEGAVKIYRQLTSEGVKPNE 479 (838)
Q Consensus 417 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 479 (838)
+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+....++..+...|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 5788899999999999999999987622 334455555555433 34566788888776654443
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.15 E-value=3.2e+02 Score=24.26 Aligned_cols=60 Identities=13% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHcCCChHHHHHHHHhccc---CCCeeehHHHHHHHHHcCChHHHHHHHHHhhhcCCCCCc
Q 046257 323 VAYSKCGKMEDASKIFSMMRE---MKDVVSWTAMISGHLQNGAIDLAVNFFCQMTREGVRPNG 382 (838)
Q Consensus 323 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 382 (838)
...++.|+.+-+..+++.-.. .+|..-++.+..+.........-.++.+.+.+.|..++.
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 334455666666666555411 223333444443332222233334555555555655543
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.70 E-value=1.3e+02 Score=28.01 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHHH
Q 046257 494 AAVEQGKQFHACSI 507 (838)
Q Consensus 494 ~~~~~~~~~~~~~~ 507 (838)
+......++...+.
T Consensus 221 ~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 221 SQVWSALQMSKALQ 234 (237)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555554443
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.02 E-value=2.5e+02 Score=25.70 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=23.3
Q ss_pred ccCCChhhHHHHHHHHHHhCCCCChh--HHHHHHHHHHhCCChHHHHHHHccCC
Q 046257 89 GCLFDHVFGRQVHCECVKSGFARDVN--VSTSLVDLYMRTNNVEDGRRVFDDMN 140 (838)
Q Consensus 89 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~m~ 140 (838)
+..|+++..+.+ ++.|..++.. .....+...++.|+.+-+..+++.-.
T Consensus 17 ~~~g~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 17 TQYGIYERCREL----VEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHcCChHHHHHH----HHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 345565544444 4455443321 12233445556666666666665543
No 306
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=26.40 E-value=8.3e+02 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHH
Q 046257 283 FVSVIKLCATTKELRLARQLHSQVLK 308 (838)
Q Consensus 283 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 308 (838)
|..+++...+.++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66677777788899999999988764
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.46 E-value=2.5e+02 Score=26.63 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=14.9
Q ss_pred HHHHHHhCCChHHHHHHHHHhh
Q 046257 251 MVAGYVTNELHMEAFETFNNMG 272 (838)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~ 272 (838)
-++.+....++++|++++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3566667777777777776654
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.43 E-value=2.9e+02 Score=23.15 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 046257 519 SALVTMYSKKGNIESASEVFKRQRKRD---LVSWNSMICGYAQHGH--TKKALEVFKEMRRQDLEF 579 (838)
Q Consensus 519 ~~li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 579 (838)
+.+++=|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456777888899999999999887553 2344455555555432 345677777777666443
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.41 E-value=1.3e+02 Score=26.23 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHhHcCCChhHHHHHHhcCCCCC---cchHHHHHHHHHhCCC--hHHHHHHHHHhhhCCCCC
Q 046257 217 CNALISMYLKSKMVRDARAVFDGMEDRD---SITWNSMVAGYVTNEL--HMEAFETFNNMGLAGAEL 278 (838)
Q Consensus 217 ~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~n~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 278 (838)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3556777777788888888888776542 2233344444444322 345666777776665433
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=24.63 E-value=3.5e+02 Score=23.56 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccC
Q 046257 563 KKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYP 615 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 615 (838)
+++.++|+.|...|+--.. .-|......+-..|++++|.++|+.-++ .+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ-NQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 3478888888887776653 3456666667777888888888877763 34455
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.10 E-value=4.1e+02 Score=24.85 Aligned_cols=84 Identities=8% Similarity=-0.010 Sum_probs=42.7
Q ss_pred HHHHcCChHHHHHHHHHhhhcCCCCCccc-------HHHHHhhCC--CCChhHHHHHHHHhhccCCc-------------
Q 046257 356 GHLQNGAIDLAVNFFCQMTREGVRPNGFT-------YSIILTAQP--AVSPFQVHAHIIKTNYEKSF------------- 413 (838)
Q Consensus 356 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~~~~~~~~~~~~~~------------- 413 (838)
..++.|+.+....+++.+...|..++... .+.+..|+. ..+..++...++..|..++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34456666666666666555555544222 222332221 34455555555555432111
Q ss_pred chhhHHHHHHHHcCCHHHHHHHHHhc
Q 046257 414 SVGTALLNAYVKKGILDEAAKVFELI 439 (838)
Q Consensus 414 ~~~~~Li~~y~~~g~~~~A~~~f~~~ 439 (838)
....+.+...+..|+.+-+..+++.-
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 12234455556778887777777643
No 312
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.30 E-value=90 Score=17.17 Aligned_cols=17 Identities=35% Similarity=0.847 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 046257 728 SNQIYSKLEELSTRLKD 744 (838)
Q Consensus 728 ~~~i~~~l~~l~~~~~~ 744 (838)
.++.|..|++|.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46788888888777664
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.26 E-value=2.6e+02 Score=26.27 Aligned_cols=25 Identities=12% Similarity=-0.117 Sum_probs=12.2
Q ss_pred HHhCCChHHHHHHHHHhhhCCCCCC
Q 046257 255 YVTNELHMEAFETFNNMGLAGAELT 279 (838)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~p~ 279 (838)
.++.|+.+....+++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3444555555555555444444443
No 314
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.94 E-value=4.6e+02 Score=24.74 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=6.2
Q ss_pred cCCChHHHHHHHHh
Q 046257 327 KCGKMEDASKIFSM 340 (838)
Q Consensus 327 ~~g~~~~A~~~f~~ 340 (838)
..|+.+-+..+++.
T Consensus 110 ~~g~~~~v~~Ll~~ 123 (273)
T 2pnn_A 110 ERRNMTLVTLLVEN 123 (273)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHC
Confidence 34444444444443
No 315
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.91 E-value=2e+02 Score=27.17 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=40.2
Q ss_pred HHHHHcCChHHHHHHHHHhhhcCCCCCc-------ccHHHHHhhCCC--CChhHHHHHHHHhhccCCc------------
Q 046257 355 SGHLQNGAIDLAVNFFCQMTREGVRPNG-------FTYSIILTAQPA--VSPFQVHAHIIKTNYEKSF------------ 413 (838)
Q Consensus 355 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~--~~~~~~~~~~~~~~~~~~~------------ 413 (838)
...++.|+.+....+++.+...|..++. .-.+.+..|+.. .+..++...+++.|..++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 86 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDE 86 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCST
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccc
Confidence 3344556666555555555555544332 222223223221 2444555555555543321
Q ss_pred -chhhHHHHHHHHcCCHHHHHHHHHh
Q 046257 414 -SVGTALLNAYVKKGILDEAAKVFEL 438 (838)
Q Consensus 414 -~~~~~Li~~y~~~g~~~~A~~~f~~ 438 (838)
....+.+...+..|+.+-+..+++.
T Consensus 87 d~~g~t~L~~A~~~g~~~~v~~Ll~~ 112 (256)
T 2etb_A 87 FYQGHSALHIAIEKRSLQCVKLLVEN 112 (256)
T ss_dssp TTTTCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 1133445555667777777666665
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.38 E-value=4.2e+02 Score=24.69 Aligned_cols=22 Identities=9% Similarity=0.015 Sum_probs=10.2
Q ss_pred HhCCChHHHHHHHHHhhhCCCC
Q 046257 256 VTNELHMEAFETFNNMGLAGAE 277 (838)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~ 277 (838)
++.|+.+....+++.+...|..
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHcCCC
Confidence 4445555444444444444433
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.35 E-value=4.3e+02 Score=23.35 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHhccCCHHHHHHHHHHHHhcCCccCC
Q 046257 563 KKALEVFKEMRRQDLEFDG-ITFIGVITACTHAGLVDEGQQYFDIMVNEHHIYPT 616 (838)
Q Consensus 563 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 616 (838)
+++.++|..|...|+--.. .-|......+-..|++.+|.++|+.-+ ..+-+|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi-~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI-QQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcH
Confidence 3467788888888776653 345666666777788888888888776 3345553
No 318
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.06 E-value=60 Score=22.72 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC
Q 046257 620 YSCMVDLYSRAGMLEKAMDIINRM 643 (838)
Q Consensus 620 y~~lv~~l~r~G~~~~A~~~~~~m 643 (838)
-+++.+.+...|..+|+..+|+-+
T Consensus 25 A~tIA~~L~~~~~~eE~v~mIr~~ 48 (61)
T 3ph0_C 25 AASIADWLAQEECMAECVTLIRLS 48 (61)
T ss_dssp HHHHHHHHHTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 356667777777777777777655
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.76 E-value=2.4e+02 Score=26.73 Aligned_cols=23 Identities=13% Similarity=-0.008 Sum_probs=18.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 046257 49 LLFEYCRDSLHQEALNLFLGIRR 71 (838)
Q Consensus 49 li~~~~~~g~~~~a~~~~~~m~~ 71 (838)
-+..+....++++|..+.++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677888999999998887654
No 320
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.69 E-value=3.1e+02 Score=25.23 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=8.0
Q ss_pred HhccCcHHHHHHHHHHHH
Q 046257 290 CATTKELRLARQLHSQVL 307 (838)
Q Consensus 290 ~~~~~~~~~a~~~~~~~~ 307 (838)
....++...+.++.+.+.
T Consensus 217 A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444444443
No 321
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=20.37 E-value=35 Score=29.12 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=27.1
Q ss_pred CCcEEEEe----cccccCcchhhHHHhhhhhcceEEEecCCcccccCCcccc
Q 046257 786 GAPLQIVK----NLRVCGDCHTVIKLISKLERRDIVVRDTNRFHHFKEGLCS 833 (838)
Q Consensus 786 ~~~~~~~~----n~~~c~~ch~~~k~~s~~~~r~~~~rd~~~~h~~~~g~cs 833 (838)
...+||+. +.++|-+| .+...-..-.+.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45677764 56777776 233333445688999999999874
Done!