BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046258
(900 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/864 (50%), Positives = 593/864 (68%), Gaps = 30/864 (3%)
Query: 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQ 60
MN +++T EA+A A LA H HL LL D + + + AG + A
Sbjct: 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKA- 59
Query: 61 SAERVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED 120
+ + + + +LP A ++ L + RA+ + D ++AVD L+L L E
Sbjct: 60 -LKELQERELARLPKVEGAEVGQYLTSRLSGALNRAEGLMEELKDRYVAVDTLVLALAEA 118
Query: 121 SQIGDLFKEAGV-AVARVKSEVEKLRGKEGRKVESASGDTTFQALKTYGRDLVEQA--GK 177
+ G+ + +K +++LRG GR V++ ++T+ AL+ YG DL A GK
Sbjct: 119 T--------PGLPGLEALKGALKELRG--GRTVQTEHAESTYNALEQYGIDLTRLAAEGK 168
Query: 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVR 237
LDPVIGRDEEIRRV++IL RRTKNNPVLIGEPGVGKTA+VEGLAQRIV+GDVP L R
Sbjct: 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKR 228
Query: 238 LIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAA 297
+++L MG+L+AGAKYRGEFEERLKAV++EV +++G+VILFIDE+H V+GAG+ EG++DA
Sbjct: 229 IVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG 288
Query: 298 NLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEK 357
N+ KP LARG+LR IGATTL+EYR+ +EKD A ERRFQ VYV EP+V +T+SILRGLKEK
Sbjct: 289 NMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEK 347
Query: 358 YEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLE 417
YE HHGVRI D A++ AA LS RYIT R LPDKAIDL+DEA A +R+ L+S PEEID LE
Sbjct: 348 YEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALE 407
Query: 418 RKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIRRLK 477
RK++QLEIE AL+KEKD S+ RL + E+ L +++ L +++E+E + ++R +
Sbjct: 408 RKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQ 467
Query: 478 QKREELLFALQXXXXXXXXXXXXXXXXGAIQEVEAAIGQLEGNQSDENLMLTETVGPDQI 537
+ +E+ ++ G + ++EA + L + E D I
Sbjct: 468 HRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEED-I 526
Query: 538 AEVVSRWTGIPVTRLGQNEK-----------ERLIGLAEAVNAVAESVLRSRAGLGRPQQ 586
AE+VSRWTGIPV++L + E+ +R++G EA+ AVA+++ R+RAGL P +
Sbjct: 527 AEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNR 586
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGH 646
P GSFLFLGPTGVGKTELAK LA LFD E ++RIDM+EYME+H+VSRLIGAPPGYVG+
Sbjct: 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGY 646
Query: 647 EEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIM 706
EEGGQLTEAVRRRPYSV+LFDE+EKAH VFN LLQ+LDDGRLTD GRTVDFRNTVII+
Sbjct: 647 EEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706
Query: 707 TSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVA 766
TSNLG+ +L G+ + RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++
Sbjct: 707 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIV 766
Query: 767 RLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVR 826
+Q+ + RLAE+ ++L +T+AA D + YDP++GARP+RR +++++ T L++ ++
Sbjct: 767 EIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 826
Query: 827 EEIDENSTVYIDASPKGDNLVYRV 850
E+ E V +D P G LV+ V
Sbjct: 827 GEVKEGDRVQVDVGPAG--LVFAV 848
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 339/863 (39%), Positives = 486/863 (56%), Gaps = 153/863 (17%)
Query: 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENAAQSA 62
+FT + + +A+A E A GH H+ + L+ + GI A+A+ G E +
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 63 ERVFN--QAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED 120
E + Q M + TP KVI + + G +++ + ++LGL+ +
Sbjct: 65 ESLIGRGQEMSQTIHYTPRAK---------KVIELSMDEARKLGHSYVGTEHILLGLIRE 115
Query: 121 SQ--IGDLFKEAGVAVARVKSEVEKLRGKE--GRKVESASGDTTFQALKTYGRDL--VEQ 174
+ + GV++ + + +V +L G G + + L + RDL + +
Sbjct: 116 GEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAK 175
Query: 175 AGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLA 234
LDPVIGR +EI+RV+ +LSRRTKNNPVLIGEPGVGKTA+ EGLAQ+I+ +VP L
Sbjct: 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235
Query: 235 DVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSM 294
D R++ LDMG KYRGEFE+RLK V+ E+ +A G +ILFID ++
Sbjct: 236 DKRVMTLDMGT-----KYRGEFEDRLKKVMDEIRQA-GNIILFID------------AAI 277
Query: 295 DAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGL 354
DA+N+ KP LARG+L+CIGATTL+EYRKY+EKDAA ERRFQ + V +PSV +++ IL+GL
Sbjct: 278 DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGL 337
Query: 355 KEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVQLDSQPEEID 414
+++YE HH V I D A+ A +LS RYI+ R LPDKAIDL+DEA + VR++ + P +
Sbjct: 338 RDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLK 397
Query: 415 NLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKKEKERIDEIR 474
LE+K L + KEKD A +++ E L D +L +E++++ +
Sbjct: 398 ELEQK-------LDEVRKEKDAAVQSQEFEKAASLRDTEQRL----------REQVEDTK 440
Query: 475 RLKQKREELLFALQXXXXXXXXXXXXXXXXGAIQEVEAAIGQLEGNQSDENLMLTETVGP 534
+ +++ +G ++ E V
Sbjct: 441 KSWKEK-------------------------------------QGQENSE-------VTV 456
Query: 535 DQIAEVVSRWTGIPVTRLGQNEKERLIGLAEAVNAVAESVLRSRA--------------- 579
D IA VVS WTG+PV+++ Q E ++L+ + E++L SR
Sbjct: 457 DDIAMVVSSWTGVPVSKIAQTETDKLLNM--------ENILHSRVIGQDEAVVAVAKAVR 508
Query: 580 ----GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSR 635
GL P++P GSF+FLGPTGVGKTELA+ALAE +F DE ++RIDMSEYME+HS S
Sbjct: 509 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS- 567
Query: 636 LIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGR 695
GGQLTE VRR+PYSVVL D +EKAH VFN LLQVL+DGRLTD +GR
Sbjct: 568 -------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGR 614
Query: 696 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFD 755
TVDFRNT++IMTSN+GA +D+V+ E+++ FRPE +NR+DEI+VF
Sbjct: 615 TVDFRNTILIMTSNVGASE--------------KDKVMGELKRAFRPEFINRIDEIIVFH 660
Query: 756 PLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKK 815
L + L ++ L + RL E+ +++ +TDAA V E D YGARP+RR ++K
Sbjct: 661 SLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKH 720
Query: 816 VVTELSRMLVREEIDENSTVYID 838
V LS L+R I + + +D
Sbjct: 721 VEDRLSEELLRGNIHKGQHIVLD 743
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/399 (55%), Positives = 290/399 (72%), Gaps = 4/399 (1%)
Query: 149 GRKVESASGDTTFQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLI 206
G +++ ++T+ AL+ YG DL A GKLDPVIGRDEEIRRV++IL RRTKNNPVLI
Sbjct: 1 GSHMQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLI 60
Query: 207 GEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKE 266
GEPGVGKTA+VEGLAQRIV+GDVP L R+++L MG+L+AGAKYRGEFEERLKAV++E
Sbjct: 61 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE 120
Query: 267 VEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEK 326
V +++G+VILFIDE+H V+GAG+ EG++DA N+ KP LARG+LR IGATTL+EYR+ +EK
Sbjct: 121 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEK 179
Query: 327 DAAFERRFQQVYVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRH 386
D A ERRFQ VYV EP+V +T+SILRGLKEKYE HHGVRI D A++ AA LS RYIT R
Sbjct: 180 DPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERR 239
Query: 387 LPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVR 446
LPDKAIDL+DEA A +R+ L+S PEEID LERK++QLEIE AL+KEKD S+ RL +
Sbjct: 240 LPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIE 299
Query: 447 KELDDLRDKLQPLMMRYKKEKERIDEIRRLKQKREELLFALQXXXXXXXXXXXXXXXXGA 506
E+ L +++ L +++E+E + ++R + + +E+ ++ G
Sbjct: 300 AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE 359
Query: 507 IQEVEAAIGQLEGNQSDENLMLTETVGPDQIAEVVSRWT 545
+ ++EA + L + E D IAE+VSRWT
Sbjct: 360 LPKLEAEVEALSEKLRGARFVRLEVTEED-IAEIVSRWT 397
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 355 bits (911), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 170/293 (58%), Positives = 226/293 (77%), Gaps = 2/293 (0%)
Query: 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN 617
+R++G EA+ AVA+++ R+RAGL P +P GSFLFLGPTGVGKTELAK LA LFD E
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 73
Query: 618 LLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVF 677
++RIDM+EYME+H+VSRLIGAPPGYVG+EEGGQLTEAVRRRPYSV+LFD +EKAH VF
Sbjct: 74 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF 133
Query: 678 NTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR 737
N LLQ+LDDGRLTD GRTVDFRNTVII+TSNLG+ +L G+ + RD+V + ++
Sbjct: 134 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 193
Query: 738 KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAE 797
+HFRPE LNRLDEIVVF PL+ EQ+R++ +Q+ + RLAE+ ++L +T+AA D +
Sbjct: 194 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER 253
Query: 798 SYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRV 850
YDP++GARP+RR +++++ T L++ ++ E+ E V +D P G LV+ V
Sbjct: 254 GYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAG--LVFAV 304
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 168/293 (57%), Positives = 220/293 (75%), Gaps = 2/293 (0%)
Query: 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEN 617
+R++G EA+ AVA+++ R+RAGL P +P GSFLFLGPTGVGKTELAK LA LFD E
Sbjct: 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 76
Query: 618 LLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVF 677
+RID +EY E+H+VSRLIGAPPGYVG+EEGGQLTEAVRRRPYSV+LFD +EKAH VF
Sbjct: 77 AXIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF 136
Query: 678 NTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR 737
N LLQ LDDGRLTD GRTVDFRNTVII TSNLG+ +L G+ + RD+V + ++
Sbjct: 137 NILLQXLDDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 196
Query: 738 KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAE 797
+HFRPE LNRLDEIVVF PL+ EQ+R++ +Q + RLAE+ ++L +T+AA D +
Sbjct: 197 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQXSYLRARLAEKRISLELTEAAKDFLAER 256
Query: 798 SYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDASPKGDNLVYRV 850
YDP++GARP+RR +++++ T L++ ++ E+ E V +D P G LV+ V
Sbjct: 257 GYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAG--LVFAV 307
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 315 bits (807), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 188/471 (39%), Positives = 274/471 (58%), Gaps = 44/471 (9%)
Query: 5 KFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENAAQSA 62
+FT + + +A+A E A GH H+ + L+ + GI A+A+ G E +
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 63 ERVFN--QAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED 120
E + Q M + TP KVI + + G +++ + ++LGL+ +
Sbjct: 65 ESLIGRGQEMSQTIHYTPRAK---------KVIELSMDEARKLGHSYVGTEHILLGLIRE 115
Query: 121 SQ--IGDLFKEAGVAVARVKSEVEKLRGKE--GRKVESASGDTTFQALKTYGRDL--VEQ 174
+ + GV++ + + +V +L G G + + L + RDL + +
Sbjct: 116 GEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAIAK 175
Query: 175 AGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLA 234
LDPVIGR +EI+RV+ +LSRRTKNNPVLIGEPGVGKTA+ EGLAQ+I+ +VP L
Sbjct: 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235
Query: 235 DVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSM 294
D R++ LDMG KYRGEFE+RLK V+ E+ +A G +ILFID ++
Sbjct: 236 DKRVMTLDMGT-----KYRGEFEDRLKKVMDEIRQA-GNIILFID------------AAI 277
Query: 295 DAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGL 354
DA+N+ KP LARG+L+CIGATTL+EYRKY+EKDAA ERRFQ + V +PSV +++ IL+GL
Sbjct: 278 DASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGL 337
Query: 355 KEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRVQLDSQPEEID 414
+++YE HH V I D A+ A +LS RYI+ R LPDKAIDL+DEA + VR++ + P +
Sbjct: 338 RDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLK 397
Query: 415 NLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMRYKK 465
LE+K L + KEKD A +++ E L D +L+ + KK
Sbjct: 398 ELEQK-------LDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK 441
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 289 bits (740), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 138/194 (71%), Positives = 166/194 (85%), Gaps = 2/194 (1%)
Query: 161 FQALKTYGRDLVEQA--GKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVE 218
QALK Y DL E+A GKLDPVIGRDEEIRR +++L RRTKNNPVLIGEPGVGKTA+VE
Sbjct: 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61
Query: 219 GLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278
GLAQRI+ G+VP L R++ALDMGALVAGAKYRGEFEERLK VL ++ + EG VILFI
Sbjct: 62 GLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI 121
Query: 279 DEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVY 338
DE+H ++GAG+ +G+MDA N+ KP LARG+L C+GATTL+EYR+Y+EKDAA ERRFQ+V+
Sbjct: 122 DELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVF 181
Query: 339 VAEPSVPDTVSILR 352
VAEPSV DT++ILR
Sbjct: 182 VAEPSVEDTIAILR 195
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 278 bits (711), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 239/406 (58%), Gaps = 17/406 (4%)
Query: 13 AIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAERVFNQAMKK 72
++ MA A H T HL +ALLS+PS A + Q E Q
Sbjct: 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPV 68
Query: 73 LPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLL--EDSQIGDLFKEA 130
LP+ D P + + +V++RA ++ G + +++ + ++SQ L ++
Sbjct: 69 LPASEEERDTQP-TLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKH 127
Query: 131 GVAVARVKSEVEKLR-----------GKEGRKVESASGDTTFQALKTYGRDLVEQAGKLD 179
V+ V + + G + E A G+ + T L + G +D
Sbjct: 128 EVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLA-RVGGID 186
Query: 180 PVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLI 239
P+IGR++E+ R +++L RR KNNP+L+GE GVGKTA+ EGLA RIV+GDVP +AD +
Sbjct: 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246
Query: 240 ALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS-MDAAN 298
+LD+G+L+AG KYRG+FE+R KA+LK++E+ + ILFIDEIH ++GAG G +DAAN
Sbjct: 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAAN 305
Query: 299 LFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTVSILRGLKEKY 358
L KP+L+ G++R IG+TT +E+ EKD A RRFQ++ + EPS+ +TV I+ GLK KY
Sbjct: 306 LIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKY 365
Query: 359 EGHHGVRIQDRALVVAAQLSARYITGRHLPDKAIDLVDEACANVRV 404
E HH VR +A+ A +L+ +YI RHLPDKAID++DEA A R+
Sbjct: 366 EAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL 411
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 201/333 (60%), Gaps = 15/333 (4%)
Query: 530 ETVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLAE-----------AVNAVAESVLRSR 578
+TV I VV+R IP + Q++++ L L + A+ A+ E++ +R
Sbjct: 419 KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMAR 478
Query: 579 AGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIG 638
AGLG +P GSFLF GPTGVGKTE+ L++ L + L+R DMSEYME+H+VSRLIG
Sbjct: 479 AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMERHTVSRLIG 535
Query: 639 APPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVD 698
APPGYVG ++GG LT+AV + P++V+L DE+EKAH VFN LLQV+D+G LTD GR D
Sbjct: 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKAD 595
Query: 699 FRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLS 758
FRN V++MT+N G +G + + D ++E++K F PE NRLD I+ FD LS
Sbjct: 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTD-AMEEIKKIFTPEFRNRLDNIIWFDHLS 654
Query: 759 HEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVT 818
+ + +V + ++ ++L ++GV+L V+ A + + + YD GARP+ R ++ +
Sbjct: 655 TDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKK 714
Query: 819 ELSRMLVREEIDENSTVYIDASPKGDNLVYRVQ 851
L+ L+ + + V + + + L Y Q
Sbjct: 715 PLANELLFGSLVDGGQVTVALDKEKNELTYGFQ 747
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 124/186 (66%), Positives = 162/186 (87%), Gaps = 3/186 (1%)
Query: 161 FQALKTYGRDL--VEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVE 218
+QAL+ Y RDL + +AGKLDPVIGRD EIRR ++ILSRRTKNNP+L+G+PGVGKTA+VE
Sbjct: 2 YQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61
Query: 219 GLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFI 278
GLA +IV+GDVP +L +L++LD+ +L+AGAKYRG+FEERLK++LKEV++AEG+V++FI
Sbjct: 62 GLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI 121
Query: 279 DEIHLVLGAGRT-EGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQV 337
DEIH V+GAG EG++DA N+ KPMLARG+LRCIGATT+ EYR+++EKD A ERRFQQ+
Sbjct: 122 DEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQI 181
Query: 338 YVAEPS 343
V +PS
Sbjct: 182 LVEQPS 187
>pdb|1KHY|A Chain A, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
pdb|1KHY|B Chain B, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
pdb|1KHY|C Chain C, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
pdb|1KHY|D Chain D, The Crystal Structure Of Clpb N Terminal Domain,
Implication To The Peptide Binding Function Of Clpb
Length = 148
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 3/146 (2%)
Query: 4 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAAQSAE 63
D+ T+K A+A A LA + PLHL ALL+ G + + +A G NA Q
Sbjct: 4 DRLTNKFQLALADAQSLALGHDNQFIEPLHLXSALLNQEGGSVSPLLTSA-GINAGQLRT 62
Query: 64 RVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLED-SQ 122
+ NQA+ +LP ++ S L++V+ + GD ++ + +L LE
Sbjct: 63 DI-NQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAALESRGT 121
Query: 123 IGDLFKEAGVAVARVKSEVEKLRGKE 148
+ D+ K AG A + +E+ RG E
Sbjct: 122 LADILKAAGATTANITQAIEQXRGGE 147
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 50/209 (23%)
Query: 196 SRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255
+R+ + +L G PG GK+ + + +A A+ ++ LV +K+ GE
Sbjct: 80 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 127
Query: 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML----------A 305
E+ +K + E + +I FID++ + G R EG +A+ K L +
Sbjct: 128 SEKLVKQLFAMARENKPSII-FIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDS 185
Query: 306 RGQLRCIGATTLEEYRKYVEKDAAFERRFQ-QVYVAEP-----------SVPDTVSIL-- 351
+G L +GAT + + D+A RRF+ ++Y+ P +V DT S+L
Sbjct: 186 QGVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTK 239
Query: 352 ---RGLKEKYEGHHGVRIQDRALVVAAQL 377
R L EG+ G D A+VV L
Sbjct: 240 EDYRTLGAMTEGYSG---SDIAVVVKDAL 265
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV 644
++PT L GP G GK+ LAKA+A + + + S+ VS+ +G V
Sbjct: 81 RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSKWMGESEKLV 132
Query: 645 GHEEGGQLTEAVRRRPYSVVLFDEVE 670
QL R S++ D+V+
Sbjct: 133 -----KQLFAMARENKPSIIFIDQVD 153
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 50/209 (23%)
Query: 196 SRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255
+R+ + +L G PG GK+ + + +A A+ ++ LV +K+ GE
Sbjct: 56 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 103
Query: 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML----------A 305
E+ +K + E + +I FIDE+ + G R EG +A+ K L +
Sbjct: 104 SEKLVKQLFAMARENKPSII-FIDEVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDS 161
Query: 306 RGQLRCIGATTLEEYRKYVEKDAAFERRFQ-QVYVAEP-----------SVPDTVSIL-- 351
+G L +GAT + + D+A RRF+ ++Y+ P +V DT +L
Sbjct: 162 QGVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 215
Query: 352 ---RGLKEKYEGHHGVRIQDRALVVAAQL 377
R L EG+ G D A+VV L
Sbjct: 216 EDYRTLGAMTEGYSG---SDIAVVVKDAL 241
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV 644
++PT L GP G GK+ LAKA+A + + + S+ VS+ +G V
Sbjct: 57 RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSKWMGESEKLV 108
Query: 645 GHEEGGQLTEAVRRRPYSVVLFDEVE 670
QL R S++ DEV+
Sbjct: 109 -----KQLFAMARENKPSIIFIDEVD 129
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|B Chain B, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|C Chain C, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|D Chain D, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|E Chain E, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|F Chain F, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|G Chain G, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|H Chain H, Structure Of Meca121 & Clpc N-Domain Complex
Length = 149
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Query: 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENA 58
M +FT + + +A+A E A GH H+ + L+ + GI A+A+ G E
Sbjct: 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKI 60
Query: 59 AQSAERVF--NQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILG 116
+ E + Q M + TP KVI + + G +++ + ++LG
Sbjct: 61 QKEVESLIGRGQEMSQTIHYTPRAK---------KVIELSMDEARKLGHSYVGTEHILLG 111
Query: 117 LLEDSQ--IGDLFKEAGVAVARVKSEVEKLRG 146
L+ + + + GV++ + + +V +L G
Sbjct: 112 LIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQPT------GSFLFLGPTGVGKTELAKALAEQ 611
+ +IG A+A AVA + LR+R + Q+P + L +GPTGVGKTE+A+ LA+
Sbjct: 15 QHIIGQADAKRAVAIA-LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73
Query: 612 LFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEK 671
++++ +++ E V + + + + GG + +AV + +V DE++K
Sbjct: 74 A---NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAI-DAVEQN--GIVFIDEIDK 127
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain
Length = 150
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENA 58
M +FT + + +A+A E A GH H+ + L+ + GI A+A+ G E
Sbjct: 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKI 60
Query: 59 AQSAERVFNQA--MKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILG 116
+ E + +A M + TP KVI + + G +++ + ++LG
Sbjct: 61 QKEVESLIGRAQEMSQTIHYTPRAK---------KVIELSMDEARKLGHSYVGTEHILLG 111
Query: 117 LLEDSQ--IGDLFKEAGVAVARVKSEVEKLRG 146
L+ + + + GV++ + + +V +L G
Sbjct: 112 LIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N-
Domain
Length = 146
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Query: 1 MNPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAIN--NAGGENA 58
M +FT + + +A+A E A GH H+ + L+ + GI A+A+ G E
Sbjct: 2 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKI 61
Query: 59 AQSAERVF--NQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILG 116
+ E + Q M + TP KVI + + G +++ + ++LG
Sbjct: 62 QKEVESLIGRGQEMSQTIHYTPRAK---------KVIELSMDEARKLGHSYVGTEHILLG 112
Query: 117 LLEDSQ--IGDLFKEAGVAVARVKSEVEKLRG 146
L+ + + + GV++ + + +V +L G
Sbjct: 113 LIREGEGVAARVLNNLGVSLNKARQQVLQLLG 144
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 50/209 (23%)
Query: 196 SRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255
+R+ + +L G PG GK+ + + +A A+ ++ LV +K+ GE
Sbjct: 47 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 94
Query: 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML----------A 305
E+ +K + E + +I FID++ + G R EG +A+ K L +
Sbjct: 95 SEKLVKQLFAMARENKPSII-FIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDS 152
Query: 306 RGQLRCIGATTLEEYRKYVEKDAAFERRFQ-QVYVAEP-----------SVPDTVSIL-- 351
+G L +GAT + + D+A RRF+ ++Y+ P +V DT +L
Sbjct: 153 QGVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 206
Query: 352 ---RGLKEKYEGHHGVRIQDRALVVAAQL 377
R L EG+ G D A+VV L
Sbjct: 207 EDYRTLGAMTEGYSG---SDIAVVVKDAL 232
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV 644
++PT L GP G GK+ LAKA+A + + + S+ VS+ +G V
Sbjct: 48 RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSKWMGESEKLV 99
Query: 645 GHEEGGQLTEAVRRRPYSVVLFDEVE 670
QL R S++ D+V+
Sbjct: 100 -----KQLFAMARENKPSIIFIDQVD 120
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 50/209 (23%)
Query: 196 SRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE 255
+R+ + +L G PG GK+ + + +A A+ ++ LV +K+ GE
Sbjct: 65 NRKPTSGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLV--SKWMGE 112
Query: 256 FEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML----------A 305
E+ +K + E + +I FID++ + G R EG +A+ K L +
Sbjct: 113 SEKLVKQLFAMARENKPSII-FIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDS 170
Query: 306 RGQLRCIGATTLEEYRKYVEKDAAFERRFQ-QVYVAEP-----------SVPDTVSIL-- 351
+G L +GAT + + D+A RRF+ ++Y+ P +V DT +L
Sbjct: 171 QGVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTK 224
Query: 352 ---RGLKEKYEGHHGVRIQDRALVVAAQL 377
R L EG+ G D A+VV L
Sbjct: 225 EDYRTLGAMTEGYSG---SDIAVVVKDAL 250
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 585 QQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYV 644
++PT L GP G GK+ LAKA+A + + + S+ VS+ +G V
Sbjct: 66 RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL-----VSKWMGESEKLV 117
Query: 645 GHEEGGQLTEAVRRRPYSVVLFDEVE 670
QL R S++ D+V+
Sbjct: 118 -----KQLFAMARENKPSIIFIDQVD 138
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 30/151 (19%)
Query: 204 VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAV 263
+L G PG GKT + + +A A+ ++ A +KY GE E+ ++A+
Sbjct: 152 LLFGPPGNGKTMLAKAVA------------AESNATFFNISAASLTSKYVGEGEKLVRAL 199
Query: 264 LKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPML--------ARGQLRCI--G 313
E + +I FID++ +L R EG DA+ K + G R + G
Sbjct: 200 FAVARELQPSII-FIDQVDSLL-CERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257
Query: 314 ATTLEEYRKYVEKDAAFERRF-QQVYVAEPS 343
AT + E D A RRF ++VYV+ P+
Sbjct: 258 ATNRPQ-----ELDEAVLRRFIKRVYVSLPN 283
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQP------TGSFLFLGPTGVGKTELAKALAE 610
+ +IG A+A AVA + LR+R + Q+P + L +GPTGVGKTE+A+ LA+
Sbjct: 15 QHIIGQADAKRAVAIA-LRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 558 ERLIGLAEAVNAVAESVLRSRAGLGRPQQP------TGSFLFLGPTGVGKTELAKALAEQ 611
+ +IG A+A AVA LR+R + Q+P + L +GPTGVGKTE+A+ LA+
Sbjct: 15 QHIIGQADAKRAVA-IALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKL 73
Query: 612 LFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHE 647
++++ +++ E GYVG E
Sbjct: 74 A---NAPFIKVEATKFTE-----------VGYVGKE 95
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 29/183 (15%)
Query: 544 WTGIPVTRLGQNEKERLIGLAE-AVNAVAESVLRSRAGLGRPQQPTGSFLFL-GPTGVGK 601
WT +L E RL+ + V E +L A + G L L GP GVGK
Sbjct: 62 WTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGK 121
Query: 602 TELAKALAEQLFDDENLLVRIDMSEYMEQHSV----SRLIGAPPGYV--GHEEGGQLTEA 655
T LAK++A+ L VRI + ++ + +GA PG + G ++ G+L
Sbjct: 122 TSLAKSIAKSL---GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLN-- 176
Query: 656 VRRRPYSVVLFDEVEKAHISVF-----NTLLQVLD---DGRLTDGQ-GRTVDFRNTVIIM 706
V L DE++K S F + +L+VLD + +D T D + I
Sbjct: 177 ------PVFLLDEIDKMS-SDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229
Query: 707 TSN 709
T+N
Sbjct: 230 TAN 232
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 164 LKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLI--GEPGVGKTAVVEGLA 221
LK GR L E+ L+ V R E V ++ ++ P+L G PGVGKT++ + +A
Sbjct: 72 LKEAGRLLDEEHHGLEKVKERILEYLAVQKLT--KSLKGPILCLAGPPGVGKTSLAKSIA 129
Query: 222 QRIVRGDVPSNLADVR 237
+ + R V +L VR
Sbjct: 130 KSLGRKFVRISLGGVR 145
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 24/113 (21%)
Query: 204 VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAV 263
+L G PG GKT + E +A R DV + A+ +G K E ER
Sbjct: 54 ILWGPPGTGKTTLAEVIA-RYANADVER-----------ISAVTSGVKEIREAIER---- 97
Query: 264 LKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATT 316
++ A + ILF+DE+H + DA F P + G + IGATT
Sbjct: 98 ARQNRNAGRRTILFVDEVHRF-----NKSQQDA---FLPHIEDGTITFIGATT 142
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 32 LHLAVALLSDPSGIFAQAIN-NAGGENAAQSAERVFNQAMKKLPSQTPAPDEIPASTTLI 90
LH V +++ P G Q +N +GGE A + +F+ +K P DE+ A+
Sbjct: 308 LHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFS-ILKVRPVPFCVLDEVEAALDEA 366
Query: 91 KVIRRAQAAQKAHGDTHLAVDQLILGLLEDSQI--GDLFKEAGVA-VARVKSEVEK 143
V R AQ +K DT V G +E++ + G +E+GV+ V VK E K
Sbjct: 367 NVFRFAQYLKKYSSDTQFIVITHRKGTMEEADVLYGVTMQESGVSKVISVKLEETK 422
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 4 DKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAGGENAA--QS 61
++FT + I +A E A H H+ + L+ + G+ A+A+ + G A Q
Sbjct: 5 ERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQE 64
Query: 62 AERVFNQAMKKLPSQTPAPDEIPASTTLIKVIRRAQAAQKAHGDTHLAVDQLILGLLEDS 121
E + Q + P IP + KV+ + G ++ + L+LGL+ +
Sbjct: 65 VEEIIGQGSQ------PTTGHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREG 118
Query: 122 Q--IGDLFKEAGVAVARVKSEVEKL 144
+ + + G + RV+ +V +L
Sbjct: 119 EGVAAQVLVKLGADLPRVRQQVIQL 143
>pdb|3FES|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
Length = 145
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 2 NPDKFTHKTNEAIAMAHELATSAGHAQFTPLHLAVALLSDPSGIFAQAINNAG 54
N ++FT + +AI +A E A S GH H+ + LL + GI A+ ++ G
Sbjct: 4 NFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVG 56
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQ 222
LD V+G+DE I+R+ + R+ + + G PG GKTA LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQ 222
LD V+G+DE I+R+ + R+ + + G PG GKTA LA+
Sbjct: 16 LDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 47/202 (23%)
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGH 646
P L GP G GKT A+A+A + + +R+ SE +++ YVG
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQK------------YVG- 285
Query: 647 EEGG----QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNT 702
EG +L E R + ++ FDE++ + R DG G + + T
Sbjct: 286 -EGARMVRELFEMARTKKACIIFFDEID------------AVGGARFDDGAGGDNEVQRT 332
Query: 703 VIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELL--NRLDEIVVFDPLSHE 760
++ + + L + KV R L P LL R+D V F E
Sbjct: 333 MLELITQLDGFDPRGNI--KVMFATNRPNTLD-------PALLRPGRIDRKVEFSLPDLE 383
Query: 761 QLRKVARLQMKDVAIRLAERGV 782
+ R+ K +++ ERG+
Sbjct: 384 GRANIFRIHSKSMSV---ERGI 402
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 204 VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAV 263
+L G PG GKT +A R D I + LV KY GE R+
Sbjct: 247 LLYGPPGTGKTLCARAVANR----------TDATFIRVIGSELV--QKYVGE-GARMVRE 293
Query: 264 LKEVEEAEGKVILFIDEIHLVLGAGRTEGS 293
L E+ + I+F DEI V GA +G+
Sbjct: 294 LFEMARTKKACIIFFDEIDAVGGARFDDGA 323
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQL 612
P+ LF GP G GKT LAKA+A +
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 204 VLIGEPGVGKTAVVEGLAQR--IVRGDVPSNLADV----------RLIALDMGALVAGAK 251
V++G P VGK+++ L ++ V DVP D+ R + +D G L +G K
Sbjct: 5 VIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK 64
Query: 252 YRGEFEERLKAVLKEVEEAEGKVILF 277
+ + +E++ L++ E V+LF
Sbjct: 65 WEKKIQEKVDRALEDAE-----VVLF 85
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQL 612
P+ LF GP G GKT LAKA+A +
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQL 612
P+ LF GP G GKT LAKA+A +
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 26/148 (17%)
Query: 204 VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAV 263
+L G PG GKT + + +A + + ++ +L +K+ GE E+ ++A+
Sbjct: 121 LLFGPPGTGKTLIGKCIASQ----------SGATFFSISASSLT--SKWVGEGEKMVRAL 168
Query: 264 LKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKY 323
V + ++FIDEI +L + R +G +++ K ++ GATT E R
Sbjct: 169 FA-VARCQQPAVIFIDEIDSLL-SQRGDGEHESSRRIKTEFL---VQLDGATTSSEDRIL 223
Query: 324 V--------EKDAAFERRF-QQVYVAEP 342
V E D A RR +++Y+ P
Sbjct: 224 VVGATNRPQEIDEAARRRLVKRLYIPLP 251
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 588 TGS---FLFLGPTGVGKTELAKALAEQLF 613
TGS LF GP GVGKT A ALA +LF
Sbjct: 43 TGSMPHLLFAGPPGVGKTTAALALARELF 71
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 177 KLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADV 236
+LD ++G++ ++R+ + + + + G PGVGKT LA+ + + N ++
Sbjct: 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL 82
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 590 SFLFLGPTGVGKTELAKALAE 610
+ L +GPTGVGKTE+A+ LA+
Sbjct: 52 NILMIGPTGVGKTEIARRLAK 72
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 590 SFLFLGPTGVGKTELAKALAE 610
+ L +GPTGVGKTE+A+ LA+
Sbjct: 51 NILMIGPTGVGKTEIARRLAK 71
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 590 SFLFLGPTGVGKTELAKALAE 610
+ L +GPTGVGKTE+A+ LA+
Sbjct: 58 NILMIGPTGVGKTEIARRLAK 78
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 17/88 (19%)
Query: 199 TKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEE 258
+K+N +LIG G GKT + + LA+ + D+P IA+ + A Y GE E
Sbjct: 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIP--------IAISDATSLTEAGYVGEDVE 119
Query: 259 R-----LKAVLKEVEEAEGKVILFIDEI 281
L+A V++A+ K I+FIDEI
Sbjct: 120 NILTRLLQASDWNVQKAQ-KGIVFIDEI 146
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 589 GSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEE 648
+ L +GPTG GKT +A+ LA+ L ++ + I + + + GYVG +
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHL----DIPIAISDATSLTE----------AGYVGEDV 118
Query: 649 GGQLTEAVRRRPYSV-------VLFDEVEK 671
LT ++ ++V V DE++K
Sbjct: 119 ENILTRLLQASDWNVQKAQKGIVFIDEIDK 148
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 581 LGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMSEYMEQHSVSRL 636
LGR ++LF G GVGKT +A+ LA+ L + + D +EQ L
Sbjct: 41 LGRIHH---AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97
Query: 637 I---GAPPGYVGHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDD 686
I A V E+ L + V+ P + V L DEV FN LL+ L++
Sbjct: 98 IEIDAASRTKV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 152
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 22/96 (22%)
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGH 646
P G L+ GP G GKT L KA+A + +R++ SE++ + Y+G
Sbjct: 206 PRGVLLY-GPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHK------------YLG- 248
Query: 647 EEGGQLTEAV----RRRPYSVVLFDEVEKAHISVFN 678
EG ++ V R S++ DEV+ F+
Sbjct: 249 -EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFD 283
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 580 GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMSEYMEQHSVSR 635
LGR ++LF G GVGKT +A+ LA+ L + + D +EQ
Sbjct: 33 SLGRIHH---AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 89
Query: 636 LI---GAPPGYVGHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDD 686
LI A V E+ L + V+ P + V L DEV FN LL+ L++
Sbjct: 90 LIEIDAASRTKV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 204 VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAV 263
+L G PG GKT + +A D + I + LV KY GE ++ +
Sbjct: 186 ILYGPPGTGKTLLARAVAHH----------TDCKFIRVSGAELV--QKYIGEGSRMVREL 233
Query: 264 LKEVEEAEGKVILFIDEIHLVLGAGRTEGS 293
E I+F+DEI + G+ R EGS
Sbjct: 234 FVMARE-HAPSIIFMDEIDSI-GSTRVEGS 261
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 22/89 (24%)
Query: 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVG 645
QP G L+ GP G GKT LA+A+A + +R+ +E +++ Y+G
Sbjct: 181 QPKGVILY-GPPGTGKTLLARAVAHH---TDCKFIRVSGAELVQK------------YIG 224
Query: 646 HEEGGQLTEAV----RRRPYSVVLFDEVE 670
EG ++ + R S++ DE++
Sbjct: 225 --EGSRMVRELFVMAREHAPSIIFMDEID 251
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE---- 255
K+N +LIG G GKT + E LA+ + DVP +AD + A Y GE
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD--------ATTLTEAGYVGEDVEN 99
Query: 256 -FEERLKAVLKEVEEAEGKVILFIDEI 281
++ L+ +V++A+ + I++ID+I
Sbjct: 100 IIQKLLQKCDYDVQKAQ-RGIVYIDQI 125
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEG 649
+ +GP G GK+ + + LA+QL +M Y + + GA G+V EG
Sbjct: 6 NIFLVGPMGAGKSTIGRQLAQQL----------NMEFYDSDQEIEKRTGADVGWVFDLEG 55
Query: 650 GQLTEAVRRRPYSVV 664
E R R V+
Sbjct: 56 ---EEGFRDREEKVI 67
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 200 KNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGE---- 255
K+N +LIG G GKT + E LA+ + DVP +AD + A Y GE
Sbjct: 51 KSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD--------ATTLTEAGYVGEDVEN 99
Query: 256 -FEERLKAVLKEVEEAEGKVILFIDEI 281
++ L+ +V++A+ + I++ID+I
Sbjct: 100 IIQKLLQKCDYDVQKAQ-RGIVYIDQI 125
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMSEYMEQHSVSRLI---GAPPG 642
++LF G GVGKT +A+ LA+ L + + D +EQ LI A
Sbjct: 43 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT 102
Query: 643 YVGHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDD 686
V E+ L + V+ P + V L DEV FN LL+ L++
Sbjct: 103 KV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 148
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMSEYMEQHSVSRLIGA-PPGYV 644
++LF G GVGKT +A+ LA+ L + + D +EQ LI
Sbjct: 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT 99
Query: 645 GHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDD 686
E+ L + V+ P + V L DEV FN LL+ L++
Sbjct: 100 KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 204 VLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAV 263
+L G PG GKT + + +A +N +R++ ++ K+ GE +K +
Sbjct: 55 LLYGPPGTGKTLLAKAVATE-------TNATFIRVVGSEL-----VKKFIGEGASLVKDI 102
Query: 264 LKEVEEAEGKVILFIDEIHLVLGAGRTE----GSMDAANLFKPML-------ARGQLRCI 312
K +E + I+FIDEI + A RT+ G + +L ARG ++ I
Sbjct: 103 FKLAKE-KAPSIIFIDEID-AIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160
Query: 313 GATT 316
GAT
Sbjct: 161 GATN 164
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 21/89 (23%)
Query: 586 QPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVG 645
+P L GP G GKT LAKA+A + +R+ SE V + IG
Sbjct: 49 EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSEL-----VKKFIG------- 93
Query: 646 HEEGGQLTEAV----RRRPYSVVLFDEVE 670
EG L + + + + S++ DE++
Sbjct: 94 --EGASLVKDIFKLAKEKAPSIIFIDEID 120
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMSEYMEQHSVSRLI---GAPPG 642
++LF G GVGKT +A+ LA+ L + + D +EQ LI A
Sbjct: 62 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT 121
Query: 643 YVGHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDD 686
V E+ L + V+ P + V L DEV FN LL+ L++
Sbjct: 122 KV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 167
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVR----IDMSEYMEQHSVSRLI---GAPPG 642
++LF G GVGKT +A+ LA+ L + + D +EQ LI A
Sbjct: 62 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRT 121
Query: 643 YVGHEEGGQLTEAVRRRP----YSVVLFDEVEKAHISVFNTLLQVLDD 686
V E+ L + V+ P + V L DEV FN LL+ L++
Sbjct: 122 KV--EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 167
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 592 LFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQ 651
L +GP GVGKT LA+A+A + R+ V +G VG
Sbjct: 53 LLVGPPGVGKTHLARAVAGE--------ARVPFITASGSDFVEMFVG-----VGAARVRD 99
Query: 652 LTEAVRRRPYSVVLFDEVE 670
L E +R +V DE++
Sbjct: 100 LFETAKRHAPCIVFIDEID 118
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIV 225
L ++G E I R+ +I + ++ G PG+GKT V LA ++
Sbjct: 20 LSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 36/173 (20%)
Query: 587 PTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGH 646
P G+ L LGP G GKT LAKA+A + + + + +E++E +IG +G
Sbjct: 39 PKGALL-LGPPGCGKTLLAKAVATE---AQVPFLAMAGAEFVE------VIGG----LGA 84
Query: 647 EEGGQLTEAVRRRPYSVVLFDEVE------KAHISVFN------TLLQVLDDGRLTDGQG 694
L + R R +V DE++ +S F+ TL Q+L + DG G
Sbjct: 85 ARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVE---MDGMG 141
Query: 695 RTVDFRNTVIIMTSNLGAEHLLSGMM--GKVTMQVARD-QVLQEVRKHFRPEL 744
T + VI++ S A+ L +M G++ V D LQE R+ F L
Sbjct: 142 TT----DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 592 LFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQ 651
L +GP GVGKT LA+A+A + R+ V +G VG
Sbjct: 77 LLVGPPGVGKTHLARAVAGE--------ARVPFITASGSDFVEMFVG-----VGAARVRD 123
Query: 652 LTEAVRRRPYSVVLFDEVE 670
L E +R +V DE++
Sbjct: 124 LFETAKRHAPCIVFIDEID 142
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 21/131 (16%)
Query: 348 VSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI-------DLVDEACA 400
+ LR K+ E G R+ LVVAA+L+ Y TG PD+ L + A
Sbjct: 192 CAALRLAKDLAENSRGARV----LVVAAELTLMYFTG---PDEGCFRTLLVQGLFGDGAA 244
Query: 401 NVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVRKELDDLRDKLQPLM 460
V V D+ D++ER ++ + E D A R E R LD + + P +
Sbjct: 245 AVIVGADA-----DDVERPLFEIVSAAQTIIPESDHALNMRFTERR--LDGVLGRQVPGL 297
Query: 461 MRYKKEKERID 471
+ E+ +D
Sbjct: 298 IGDNVERCLLD 308
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 23/194 (11%)
Query: 562 GLAEAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD---ENL 618
GL E +A+ +L + +G S LGP G+ K+ +A+ L + E L
Sbjct: 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYL 74
Query: 619 LVRIDM-SEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVF 677
+ R E S+ L G G L EA +V DE+ KA ++
Sbjct: 75 MTRFSTPEEVFGPLSIQAL--KDEGRYERLTSGYLPEA------EIVFLDEIWKAGPAIL 126
Query: 678 NTLLQVLDDGRLTDG-QGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV 736
NTLL +++ + +G + R V A+ L + ++ +++ D+V +
Sbjct: 127 NTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKV--QD 184
Query: 737 RKHFRPELLNRLDE 750
+ +FR L ++ DE
Sbjct: 185 KANFRSMLTSQQDE 198
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 178 LDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNL 233
LD V G++E I V + + + + G PG GKT+ + LA+ I G SN+
Sbjct: 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNM 78
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 592 LFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQ 651
L +GP GVGKT LA+A+A + R+ V +G VG
Sbjct: 68 LLVGPPGVGKTHLARAVAGE--------ARVPFITASGSDFVEMFVG-----VGAARVRD 114
Query: 652 LTEAVRRRPYSVVLFDEVE 670
L E +R +V DE++
Sbjct: 115 LFETAKRHAPCIVFIDEID 133
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 592 LFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQ 651
L +GP GVGKT LA+A+A + R+ V +G VG
Sbjct: 77 LLVGPPGVGKTHLARAVAGE--------ARVPFITASGSDFVEMFVG-----VGAARVRD 123
Query: 652 LTEAVRRRPYSVVLFDEVE 670
L E +R +V DE++
Sbjct: 124 LFETAKRHAPCIVFIDEID 142
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQL 612
EA + E +++S+ GR + L GP G GKT LA A+A++L
Sbjct: 61 EACGVIVE-LIKSKKXAGR------AVLLAGPPGTGKTALALAIAQEL 101
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 19/106 (17%)
Query: 348 VSILRGLKEKYEGHHGVRIQDRALVVAAQLSARYITGRHLPDKAI-------DLVDEACA 400
+ LR K+ E G R+ LVVAA+L+ Y TG PD+ L + A
Sbjct: 162 CAALRLAKDLAENSRGARV----LVVAAELTLMYFTG---PDEGCFRTLLVQGLFGDGAA 214
Query: 401 NVRVQLDSQPEEIDNLERKRMQLEIELHALEKEKDKASKARLVEVR 446
V V D+ D++ER ++ + E D A R E R
Sbjct: 215 AVIVGADA-----DDVERPLFEIVSAAQTIIPESDHALNMRFTERR 255
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 565 EAVNAVAESVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQL 612
EA + E +++S+ GR + L GP G GKT LA A+A++L
Sbjct: 47 EACGVIVE-LIKSKKMAGR------AVLLAGPPGTGKTALALAIAQEL 87
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 27/118 (22%)
Query: 186 EEIRRVVRILSRRTKNNPV---------LIGEPGVGKTAVVEGLAQRIVRGDVP-SNLAD 235
EE++ VV L +K N + L+G PG GKT + +A +VP +++
Sbjct: 26 EELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG---EANVPFFHISG 82
Query: 236 VRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGS 293
+ L +G V A+ R F + +A I+FIDEI V GR G+
Sbjct: 83 SDFVELFVG--VGAARVRDLFAQ---------AKAHAPCIVFIDEIDAV---GRHRGA 126
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 590 SFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEY--MEQHSVS-RLIGAPPGYVGH 646
S LFLG TG GKT ++K + ++ + V+ + EY ++Q V+ R +G P V
Sbjct: 47 SNLFLGLTGTGKTFVSKYIFNEIEE-----VKKEDEEYKDVKQAYVNCREVGGTPQAVLS 101
Query: 647 EEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIM 706
G+LT V K I++ + ++ + R R + + + V +
Sbjct: 102 SLAGKLTGF------------SVPKHGINLGEYIDKIKNGTR----NIRAIIYLDEVDTL 145
Query: 707 TSNLGAEHLLSGMM---GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLR 763
G + +L ++ +++ + + + VR + P +L+ L V+F P EQL+
Sbjct: 146 VKRRGGDIVLYQLLRSDANISVIMISNDI--NVRDYMEPRVLSSLGPSVIFKPYDAEQLK 203
Query: 764 KV 765
+
Sbjct: 204 FI 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,059,080
Number of Sequences: 62578
Number of extensions: 988245
Number of successful extensions: 3944
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3772
Number of HSP's gapped (non-prelim): 187
length of query: 900
length of database: 14,973,337
effective HSP length: 108
effective length of query: 792
effective length of database: 8,214,913
effective search space: 6506211096
effective search space used: 6506211096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)